Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041140 | XP_003625951.1 | 93.023 | 344 | 5 | 1 | 1 | 325 | 1 | 344 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041140 | sp|Q9LZK5|DNJ19_ARATH | 72.911 | 347 | 71 | 3 | 1 | 325 | 1 | 346 | 0.0 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041140 | G7KSR8 | 93.023 | 344 | 5 | 1 | 1 | 325 | 1 | 344 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003930 | Msa1041140 | 0.886573 | 3.040066e-72 | -8.615850e-47 |
| Msa0057890 | Msa1041140 | 0.857592 | 1.469641e-62 | -8.615850e-47 |
| Msa0102600 | Msa1041140 | 0.900096 | 1.030714e-77 | -8.615850e-47 |
| Msa0707100 | Msa1041140 | 0.810683 | 1.020147e-50 | -8.615850e-47 |
| Msa0819540 | Msa1041140 | 0.815894 | 7.316909e-52 | -8.615850e-47 |
| Msa0147380 | Msa1041140 | 0.898742 | 3.936605e-77 | -8.615850e-47 |
| Msa0185350 | Msa1041140 | 0.803000 | 4.296159e-49 | -8.615850e-47 |
| Msa0208310 | Msa1041140 | 0.810984 | 8.784650e-51 | -8.615850e-47 |
| Msa0215590 | Msa1041140 | 0.802466 | 5.537329e-49 | -8.615850e-47 |
| Msa0372420 | Msa1041140 | 0.843317 | 1.509127e-58 | -8.615850e-47 |
| Msa0382400 | Msa1041140 | 0.866252 | 3.266226e-65 | -8.615850e-47 |
| Msa0432130 | Msa1041140 | 0.845753 | 3.336012e-59 | -8.615850e-47 |
| Msa0476640 | Msa1041140 | 0.849612 | 2.891685e-60 | -8.615850e-47 |
| Msa1041140 | Msa1079190 | 0.820359 | 7.152712e-53 | -8.615850e-47 |
| Msa1041140 | Msa1082290 | 0.866598 | 2.535693e-65 | -8.615850e-47 |
| Msa1041140 | Msa1082300 | 0.821346 | 4.239780e-53 | -8.615850e-47 |
| Msa1041140 | Msa1083750 | 0.807307 | 5.388794e-50 | -8.615850e-47 |
| Msa1041140 | Msa1127190 | 0.913500 | 5.723075e-84 | -8.615850e-47 |
| Msa1041140 | Msa1128660 | 0.806338 | 8.633539e-50 | -8.615850e-47 |
| Msa1041140 | Msa1133540 | 0.822330 | 2.510078e-53 | -8.615850e-47 |
| Msa1041140 | Msa1168990 | 0.824137 | 9.499637e-54 | -8.615850e-47 |
| Msa1041140 | Msa1169080 | 0.833409 | 5.422196e-56 | -8.615850e-47 |
| Msa1041140 | Msa1235380 | 0.819264 | 1.272575e-52 | -8.615850e-47 |
| Msa1041140 | Msa1362020 | 0.980155 | 1.433224e-149 | -8.615850e-47 |
| Msa1041140 | Msa1421460 | 0.841353 | 5.004495e-58 | -8.615850e-47 |
| Msa0333650 | Msa1041140 | 0.802823 | 4.672089e-49 | -8.615850e-47 |
| Msa0573090 | Msa1041140 | 0.816588 | 5.118897e-52 | -8.615850e-47 |
| Msa0597000 | Msa1041140 | 0.806702 | 7.235628e-50 | -8.615850e-47 |
| Msa0867160 | Msa1041140 | 0.819378 | 1.198708e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041140 | MtrunA17_Chr7g0269841 | 93.023 | 344 | 5 | 1 | 1 | 325 | 1 | 344 | 0.0 | 656 |
| Msa1041140 | MtrunA17_Chr8g0334811 | 33.621 | 348 | 181 | 10 | 27 | 324 | 15 | 362 | 3.97e-41 | 148 |
| Msa1041140 | MtrunA17_Chr3g0138471 | 30.275 | 327 | 195 | 8 | 27 | 325 | 5 | 326 | 1.70e-38 | 139 |
| Msa1041140 | MtrunA17_Chr4g0006391 | 33.528 | 343 | 174 | 9 | 27 | 324 | 5 | 338 | 2.64e-38 | 139 |
| Msa1041140 | MtrunA17_Chr4g0040501 | 31.686 | 344 | 186 | 8 | 27 | 325 | 5 | 344 | 2.96e-38 | 139 |
| Msa1041140 | MtrunA17_Chr2g0282741 | 30.383 | 339 | 192 | 9 | 27 | 325 | 5 | 339 | 8.57e-35 | 129 |
| Msa1041140 | MtrunA17_Chr2g0324921 | 30.702 | 342 | 183 | 10 | 27 | 325 | 5 | 335 | 7.14e-34 | 127 |
| Msa1041140 | MtrunA17_Chr2g0322181 | 30.058 | 346 | 193 | 8 | 27 | 324 | 14 | 358 | 7.93e-29 | 114 |
| Msa1041140 | MtrunA17_Chr4g0025401 | 31.686 | 344 | 188 | 7 | 27 | 324 | 14 | 356 | 3.22e-28 | 113 |
| Msa1041140 | MtrunA17_Chr1g0194941 | 70.312 | 64 | 19 | 0 | 204 | 267 | 39 | 102 | 8.04e-26 | 99.4 |
| Msa1041140 | MtrunA17_Chr3g0093111 | 26.744 | 344 | 172 | 8 | 27 | 325 | 3 | 311 | 5.74e-25 | 102 |
| Msa1041140 | MtrunA17_Chr4g0010781 | 28.451 | 355 | 187 | 12 | 20 | 320 | 80 | 421 | 9.81e-23 | 98.2 |
| Msa1041140 | MtrunA17_Chr3g0087741 | 25.513 | 341 | 214 | 7 | 20 | 321 | 83 | 422 | 1.10e-20 | 92.0 |
| Msa1041140 | MtrunA17_Chr5g0426951 | 26.667 | 360 | 188 | 10 | 18 | 318 | 75 | 417 | 9.76e-20 | 89.7 |
| Msa1041140 | MtrunA17_Chr3g0123861 | 27.089 | 347 | 199 | 13 | 27 | 323 | 83 | 425 | 3.67e-19 | 87.8 |
| Msa1041140 | MtrunA17_Chr5g0415751 | 33.083 | 133 | 88 | 1 | 193 | 324 | 28 | 160 | 8.93e-17 | 76.6 |
| Msa1041140 | MtrunA17_Chr3g0124801 | 31.351 | 185 | 119 | 5 | 143 | 324 | 112 | 291 | 1.92e-15 | 75.5 |
| Msa1041140 | MtrunA17_Chr6g0478651 | 26.446 | 363 | 192 | 14 | 25 | 323 | 67 | 418 | 3.03e-15 | 76.3 |
| Msa1041140 | MtrunA17_Chr2g0277721 | 28.873 | 142 | 99 | 2 | 185 | 324 | 118 | 259 | 1.38e-11 | 63.9 |
| Msa1041140 | MtrunA17_Chr2g0282761 | 61.702 | 47 | 17 | 1 | 27 | 72 | 5 | 51 | 2.21e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041140 | AT3G62600.1 | 72.911 | 347 | 71 | 3 | 1 | 325 | 1 | 346 | 0.0 | 507 |
| Msa1041140 | AT5G01390.1 | 31.085 | 341 | 180 | 9 | 27 | 324 | 5 | 333 | 5.54e-41 | 146 |
| Msa1041140 | AT2G20560.1 | 31.287 | 342 | 183 | 8 | 27 | 325 | 5 | 337 | 7.08e-41 | 145 |
| Msa1041140 | AT3G08910.1 | 32.635 | 334 | 171 | 9 | 27 | 324 | 5 | 320 | 1.39e-40 | 144 |
| Msa1041140 | AT5G25530.2 | 31.268 | 339 | 188 | 10 | 27 | 325 | 5 | 338 | 7.41e-38 | 138 |
| Msa1041140 | AT5G25530.1 | 30.548 | 347 | 188 | 10 | 27 | 325 | 5 | 346 | 9.64e-37 | 135 |
| Msa1041140 | AT5G22060.1 | 32.759 | 348 | 181 | 11 | 27 | 324 | 15 | 359 | 9.97e-34 | 128 |
| Msa1041140 | AT1G59725.1 | 28.611 | 360 | 161 | 9 | 27 | 325 | 5 | 329 | 1.31e-33 | 126 |
| Msa1041140 | AT5G01390.2 | 29.129 | 333 | 139 | 8 | 27 | 324 | 5 | 275 | 1.18e-28 | 112 |
| Msa1041140 | AT3G44110.1 | 29.143 | 350 | 190 | 9 | 27 | 324 | 15 | 358 | 1.60e-28 | 114 |
| Msa1041140 | AT5G48030.1 | 27.874 | 348 | 198 | 7 | 20 | 317 | 88 | 432 | 9.44e-25 | 104 |
| Msa1041140 | AT1G10350.1 | 37.179 | 156 | 96 | 1 | 170 | 325 | 194 | 347 | 1.63e-23 | 99.4 |
| Msa1041140 | AT2G20550.1 | 32.787 | 183 | 118 | 3 | 144 | 325 | 106 | 284 | 8.38e-23 | 96.3 |
| Msa1041140 | AT2G20550.2 | 32.787 | 183 | 118 | 3 | 144 | 325 | 106 | 284 | 8.38e-23 | 96.3 |
| Msa1041140 | AT3G44110.2 | 29.665 | 209 | 118 | 4 | 113 | 292 | 117 | 325 | 2.80e-21 | 93.2 |
| Msa1041140 | AT2G22360.1 | 29.683 | 347 | 189 | 14 | 27 | 323 | 87 | 428 | 3.72e-20 | 90.9 |
| Msa1041140 | AT4G28480.1 | 31.148 | 183 | 121 | 3 | 144 | 325 | 170 | 348 | 7.13e-20 | 89.4 |
| Msa1041140 | AT1G44160.1 | 29.524 | 210 | 113 | 4 | 128 | 324 | 166 | 353 | 3.17e-19 | 87.4 |
| Msa1041140 | AT4G28480.2 | 35.294 | 136 | 87 | 1 | 191 | 325 | 155 | 290 | 4.68e-19 | 86.3 |
| Msa1041140 | AT4G28480.2 | 59.574 | 47 | 18 | 1 | 27 | 72 | 5 | 51 | 2.42e-11 | 63.9 |
| Msa1041140 | AT4G39960.1 | 26.420 | 352 | 201 | 11 | 27 | 323 | 86 | 434 | 1.95e-16 | 80.1 |
| Msa1041140 | AT4G39960.2 | 26.420 | 352 | 201 | 11 | 27 | 323 | 86 | 434 | 1.95e-16 | 80.1 |
| Msa1041140 | AT3G47940.1 | 32.075 | 159 | 101 | 4 | 170 | 325 | 193 | 347 | 1.79e-14 | 73.6 |
| Msa1041140 | AT1G80030.4 | 26.062 | 353 | 192 | 14 | 27 | 317 | 76 | 421 | 1.97e-14 | 74.3 |
| Msa1041140 | AT1G80030.2 | 26.062 | 353 | 192 | 14 | 27 | 317 | 76 | 421 | 2.11e-14 | 74.3 |
| Msa1041140 | AT1G80030.3 | 26.062 | 353 | 192 | 14 | 27 | 317 | 76 | 421 | 2.11e-14 | 74.3 |
| Msa1041140 | AT1G80030.1 | 26.062 | 353 | 192 | 14 | 27 | 317 | 76 | 421 | 2.11e-14 | 74.3 |
| Msa1041140 | AT5G01390.4 | 28.283 | 198 | 90 | 7 | 27 | 182 | 5 | 192 | 1.16e-12 | 67.0 |
| Msa1041140 | AT1G11040.1 | 33.824 | 136 | 89 | 1 | 190 | 324 | 297 | 432 | 5.09e-12 | 66.6 |
| Msa1041140 | AT5G01390.3 | 36.111 | 108 | 35 | 3 | 27 | 100 | 5 | 112 | 1.39e-11 | 63.9 |
| Msa1041140 | AT5G05750.1 | 38.318 | 107 | 39 | 4 | 25 | 104 | 113 | 219 | 8.54e-11 | 62.4 |
Find 108 sgRNAs with CRISPR-Local
Find 437 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTAGAATTTGGGAATT+AGG | 0.151861 | 7_1:-78663702 | None:intergenic |
| ATGTGATTGGAATTAGAATT+TGG | 0.171341 | 7_1:-78663710 | None:intergenic |
| ATGGAGAATCTGGAGATTTA+AGG | 0.175844 | 7_1:+78668398 | Msa1041140:CDS |
| TCCAGATTCTCCATCAATTA+TGG | 0.185165 | 7_1:-78668389 | None:intergenic |
| AATGTTTCTTTCAGTTTCTT+TGG | 0.228428 | 7_1:+78665041 | Msa1041140:intron |
| CGACGACGTTATTGTTGATT+TGG | 0.287066 | 7_1:+78665106 | Msa1041140:CDS |
| TTGAACTTCCTTACTTGCTT+TGG | 0.294218 | 7_1:-78668999 | None:intergenic |
| AACCCTTGAAGATTTGTATA+TGG | 0.319394 | 7_1:+78665133 | Msa1041140:CDS |
| GAGGTTTATCACAGGCAAAT+TGG | 0.319956 | 7_1:+78665872 | Msa1041140:CDS |
| GAATTAGAATTTGGGAATTA+GGG | 0.327716 | 7_1:-78663701 | None:intergenic |
| GTCATTTGTTGAAACATTCC+AGG | 0.330187 | 7_1:-78665896 | None:intergenic |
| TTATTAGCTTCTTCATTTCC+CGG | 0.331012 | 7_1:-78664035 | None:intergenic |
| TCATTTCCCGGATTCTTATC+AGG | 0.331429 | 7_1:-78664023 | None:intergenic |
| CCCATAATTGATGGAGAATC+TGG | 0.346187 | 7_1:+78668388 | Msa1041140:CDS |
| TGTGATTGGAATTAGAATTT+GGG | 0.350143 | 7_1:-78663709 | None:intergenic |
| AGAATTTGGGAATTAGGGTT+TGG | 0.351219 | 7_1:-78663696 | None:intergenic |
| AGCAAAAGGCTCACTTTGAT+TGG | 0.352124 | 7_1:+78663516 | None:intergenic |
| CTTTAGGTTCAAGCTCTTGT+TGG | 0.355874 | 7_1:+78668811 | Msa1041140:intron |
| TCTCTCCGAAACGCAATCTC+AGG | 0.359226 | 7_1:-78663740 | None:intergenic |
| CCAGATTCTCCATCAATTAT+GGG | 0.369755 | 7_1:-78668388 | None:intergenic |
| CTCAGGGATTTCGATGTGAT+TGG | 0.371305 | 7_1:-78663723 | None:intergenic |
| TGGAGAATCTGGAGATTTAA+GGG | 0.381629 | 7_1:+78668399 | Msa1041140:CDS |
| AGGTTTATCACAGGCAAATT+GGG | 0.390498 | 7_1:+78665873 | Msa1041140:CDS |
| GAATTTGGGAATTAGGGTTT+GGG | 0.392506 | 7_1:-78663695 | None:intergenic |
| ACAGAGAAGGAACAACAATT+TGG | 0.396887 | 7_1:-78663791 | None:intergenic |
| ATCAAAATAGCACCACAATA+AGG | 0.397206 | 7_1:-78669333 | None:intergenic |
| TTGATGCGCCATTGAAGATT+CGG | 0.405772 | 7_1:-78663764 | None:intergenic |
| TTTCCGCGAAGACTTGACTA+TGG | 0.405938 | 7_1:-78663583 | None:intergenic |
| CATTTCTTTCTTCAATTGCT+AGG | 0.406440 | 7_1:-78669472 | None:intergenic |
| TTCTTGGTTAGAATACATTC+AGG | 0.416876 | 7_1:+78669135 | Msa1041140:exon |
| GTCACTGTTGATATTGAGAA+AGG | 0.417431 | 7_1:+78666275 | Msa1041140:CDS |
| AGCAAGTAAGGAAGTTCAAA+GGG | 0.426789 | 7_1:+78669003 | Msa1041140:CDS |
| GTCCTCAATGTAACATGATT+AGG | 0.428431 | 7_1:+78669181 | Msa1041140:three_prime_UTR |
| TGAACACCTTGATGAACATT+TGG | 0.431652 | 7_1:+78668849 | Msa1041140:CDS |
| CATGCCGCTGGTGGAGGAAG+AGG | 0.435113 | 7_1:+78664551 | Msa1041140:CDS |
| TCACAAATCCAAAGCAAGTA+AGG | 0.443028 | 7_1:+78668991 | Msa1041140:CDS |
| GTATCATCCTGATAAGAATC+CGG | 0.445522 | 7_1:+78664016 | Msa1041140:CDS |
| TTTCTTTCAGTTTCTTTGGC+GGG | 0.452768 | 7_1:+78665045 | Msa1041140:intron |
| TAAATGTGACCGCACCTTCA+AGG | 0.454412 | 7_1:-78665162 | None:intergenic |
| GACGGCGAGCCCATAATTGA+TGG | 0.455291 | 7_1:+78668379 | Msa1041140:CDS |
| CACCCATATACAAATCTTCA+AGG | 0.462023 | 7_1:-78665136 | None:intergenic |
| TTCTTTGTGCTCATATGCAA+TGG | 0.465194 | 7_1:-78669035 | None:intergenic |
| GCATCTACTGTGATCCTTGT+CGG | 0.469809 | 7_1:+78669300 | Msa1041140:three_prime_UTR |
| AATGTTGTAAAGCCAGCTCC+TGG | 0.471578 | 7_1:+78665824 | Msa1041140:CDS |
| GTATATGGGTGGTTCCTTGA+AGG | 0.471939 | 7_1:+78665148 | Msa1041140:CDS |
| TTCTTTCAGTTTCTTTGGCG+GGG | 0.473982 | 7_1:+78665046 | Msa1041140:intron |
| ACCCTTGAAGATTTGTATAT+GGG | 0.478838 | 7_1:+78665134 | Msa1041140:CDS |
| ATTTCTTTCTTCAATTGCTA+GGG | 0.482619 | 7_1:-78669471 | None:intergenic |
| TTTAAAATGTAATTTACCAT+AGG | 0.484246 | 7_1:-78669524 | None:intergenic |
| AGTATAAATTGTCAATCCTA+TGG | 0.486240 | 7_1:+78669508 | Msa1041140:three_prime_UTR |
| AGCTTGCTTTGTGTCTGCAA+TGG | 0.486629 | 7_1:+78669401 | Msa1041140:three_prime_UTR |
| GGAGAGATCCGAATCTTCAA+TGG | 0.487027 | 7_1:+78663756 | Msa1041140:exon |
| GAAAGGCATGAAAGATGGCC+AGG | 0.488282 | 7_1:+78666292 | Msa1041140:CDS |
| AAGCAGCATGCCGCTGGTGG+AGG | 0.488986 | 7_1:+78664545 | Msa1041140:CDS |
| GTTTCTTTCAGTTTCTTTGG+CGG | 0.494548 | 7_1:+78665044 | Msa1041140:intron |
| GTGCTAATGTCAAATACGTA+AGG | 0.495722 | 7_1:+78666240 | Msa1041140:CDS |
| TTACAACAAATACACGCCTT+AGG | 0.499816 | 7_1:+78669214 | Msa1041140:three_prime_UTR |
| TATCACAGGCAAATTGGGCC+TGG | 0.501769 | 7_1:+78665878 | Msa1041140:CDS |
| AGAAGCTAATAAGAAATTTG+CGG | 0.505990 | 7_1:+78664046 | Msa1041140:CDS |
| AAATCCCTGAGATTGCGTTT+CGG | 0.510468 | 7_1:+78663735 | Msa1041140:five_prime_UTR |
| CTGTTCCTCCGATAGTGAGG+TGG | 0.511479 | 7_1:-78669093 | None:intergenic |
| TATCATCCTGATAAGAATCC+GGG | 0.516808 | 7_1:+78664017 | Msa1041140:CDS |
| GCCGCTGGTGGAGGAAGAGG+TGG | 0.524267 | 7_1:+78664554 | Msa1041140:CDS |
| GCTGGTGGAGGAAGAGGTGG+TGG | 0.526997 | 7_1:+78664557 | Msa1041140:CDS |
| TGTTCCTCCGATAGTGAGGT+GGG | 0.527665 | 7_1:-78669092 | None:intergenic |
| TTGAAGCAGCATGCCGCTGG+TGG | 0.528180 | 7_1:+78664542 | Msa1041140:CDS |
| CATCTTGTGAGCAAGGTGAA+AGG | 0.531664 | 7_1:+78669428 | Msa1041140:three_prime_UTR |
| GGTTTGAAGCAGCATGCCGC+TGG | 0.535682 | 7_1:+78664539 | Msa1041140:CDS |
| ATTGTAATTATCAGGTTTGG+AGG | 0.539622 | 7_1:+78665795 | Msa1041140:intron |
| TCTGTTCCCCACCTCACTAT+CGG | 0.540991 | 7_1:+78669085 | Msa1041140:CDS |
| TCTTTCAGTTTCTTTGGCGG+GGG | 0.541453 | 7_1:+78665047 | Msa1041140:intron |
| TTGCATATGAGCACAAAGAA+AGG | 0.546751 | 7_1:+78669038 | Msa1041140:CDS |
| ATTGAGAAAGGCATGAAAGA+TGG | 0.548944 | 7_1:+78666287 | Msa1041140:CDS |
| CTTGAAGATTTGTATATGGG+TGG | 0.550525 | 7_1:+78665137 | Msa1041140:CDS |
| ACTCCATAGTCAAGTCTTCG+CGG | 0.553039 | 7_1:+78663580 | Msa1041140:five_prime_UTR |
| TTGTAATTATCAGGTTTGGA+GGG | 0.555966 | 7_1:+78665796 | Msa1041140:intron |
| AAGCAAGTAAGGAAGTTCAA+AGG | 0.564203 | 7_1:+78669002 | Msa1041140:CDS |
| TGTCTACCAAATGTTCATCA+AGG | 0.574433 | 7_1:-78668855 | None:intergenic |
| GTTTCAACAAATGACAGAGC+AGG | 0.577760 | 7_1:+78665904 | Msa1041140:CDS |
| CTCTCCGAAACGCAATCTCA+GGG | 0.582900 | 7_1:-78663739 | None:intergenic |
| GTAAGGAAGTTCAAAGGGGA+GGG | 0.585483 | 7_1:+78669008 | Msa1041140:CDS |
| AATCGCTTCTTCTATTACGA+CGG | 0.588377 | 7_1:-78663637 | None:intergenic |
| CACCTAATCATGTTACATTG+AGG | 0.596632 | 7_1:-78669183 | None:intergenic |
| ACGCTGTAACTGTAGAAATG+AGG | 0.598744 | 7_1:+78665853 | Msa1041140:CDS |
| TGCTAATGTCAAATACGTAA+GGG | 0.599841 | 7_1:+78666241 | Msa1041140:CDS |
| TCAAGTGTCGAAAGGTGCAT+CGG | 0.599920 | 7_1:+78663953 | Msa1041140:CDS |
| AATAGCATAGAGCACAGAGA+AGG | 0.608834 | 7_1:-78663804 | None:intergenic |
| AGTAAGGAAGTTCAAAGGGG+AGG | 0.612915 | 7_1:+78669007 | Msa1041140:CDS |
| ATGTTCATCAAGGTGTTCAA+CGG | 0.613159 | 7_1:-78668845 | None:intergenic |
| ACCACCTCTTCCTCCACCAG+CGG | 0.613282 | 7_1:-78664555 | None:intergenic |
| GGCACATGAGTGCCTTATTG+TGG | 0.615842 | 7_1:+78669321 | Msa1041140:three_prime_UTR |
| AAGGCACTCATGTGCCGACA+AGG | 0.617284 | 7_1:-78669314 | None:intergenic |
| AAATTTGCGGAGATTAGCAA+TGG | 0.617908 | 7_1:+78664059 | Msa1041140:CDS |
| GTAGAAATGAGGTTTATCAC+AGG | 0.618569 | 7_1:+78665864 | Msa1041140:CDS |
| AATGTCAAATACGTAAGGGA+GGG | 0.618582 | 7_1:+78666245 | Msa1041140:CDS |
| AGGTGGTGGAATGAACATGC+AGG | 0.620609 | 7_1:+78664571 | Msa1041140:CDS |
| TTTCTGTTCCTCCGATAGTG+AGG | 0.622344 | 7_1:-78669096 | None:intergenic |
| GAAGAAGAGAAAATTGCGAA+AGG | 0.633709 | 7_1:+78665083 | Msa1041140:CDS |
| TAATGTCAAATACGTAAGGG+AGG | 0.634516 | 7_1:+78666244 | Msa1041140:CDS |
| ACCCATATACAAATCTTCAA+GGG | 0.634761 | 7_1:-78665135 | None:intergenic |
| GATATACTTCAAGTGTCGAA+AGG | 0.635494 | 7_1:+78663945 | Msa1041140:CDS |
| CACGACTGTCACTATCACGC+TGG | 0.651681 | 7_1:+78668570 | Msa1041140:CDS |
| GTTCCTCCGATAGTGAGGTG+GGG | 0.652557 | 7_1:-78669091 | None:intergenic |
| TTTGGTAGACATAAGCTCGA+AGG | 0.653250 | 7_1:+78668867 | Msa1041140:CDS |
| CTCAATGTAACATGATTAGG+TGG | 0.663853 | 7_1:+78669184 | Msa1041140:three_prime_UTR |
| GTTCCCCACCTCACTATCGG+AGG | 0.706891 | 7_1:+78669088 | Msa1041140:CDS |
| GCAAGTAAGGAAGTTCAAAG+GGG | 0.733693 | 7_1:+78669004 | Msa1041140:CDS |
| AAAGTTCATGAGGTGCTGTG+CGG | 0.790333 | 7_1:-78668522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTATAAGCTATATT+AGG | + | chr7_1:78664283-78664302 | Msa1041140:intron | 10.0% |
| !!! | TATTTTTATAAGCTATATTA+GGG | + | chr7_1:78664284-78664303 | Msa1041140:intron | 10.0% |
| !! | AATCAAATAATATATGTTTA+TGG | + | chr7_1:78664738-78664757 | Msa1041140:intron | 10.0% |
| !!! | TTTTATTTATGATTTTCTAT+TGG | - | chr7_1:78665418-78665437 | None:intergenic | 10.0% |
| !! | ATATATAAATTAAACATTTC+TGG | - | chr7_1:78666071-78666090 | None:intergenic | 10.0% |
| !!! | AATAAAAATAAAGTATCTAT+TGG | - | chr7_1:78669268-78669287 | None:intergenic | 10.0% |
| !!! | ATTTTTATAAGCTATATTAG+GGG | + | chr7_1:78664285-78664304 | Msa1041140:intron | 15.0% |
| !! | AGAAATATTTATGATAAGTA+TGG | + | chr7_1:78664509-78664528 | Msa1041140:intron | 15.0% |
| !! | AATGACTATATTAAAATTTG+TGG | - | chr7_1:78664887-78664906 | None:intergenic | 15.0% |
| !! | TGTATTTAATTATTTACCAA+TGG | + | chr7_1:78665221-78665240 | Msa1041140:intron | 15.0% |
| !! | GTATTTAATTATTTACCAAT+GGG | + | chr7_1:78665222-78665241 | Msa1041140:intron | 15.0% |
| !! | ATTATTGTATTGTAATTATC+AGG | + | chr7_1:78665787-78665806 | Msa1041140:intron | 15.0% |
| !! | AAAATATACATCCTAAAAAA+TGG | - | chr7_1:78665983-78666002 | None:intergenic | 15.0% |
| !!! | CATAAATTTTTGCAAATATT+CGG | - | chr7_1:78666179-78666198 | None:intergenic | 15.0% |
| !!! | GATATAAATTAAGTTTGTTT+TGG | - | chr7_1:78667757-78667776 | None:intergenic | 15.0% |
| !! | AAGGATAAACATAAAAAATA+CGG | + | chr7_1:78667803-78667822 | Msa1041140:intron | 15.0% |
| !!! | TTTCCTTTAAAAAAAAAACA+AGG | - | chr7_1:78668092-78668111 | None:intergenic | 15.0% |
| !! | ACAAAAATAAAATCAATTCT+TGG | + | chr7_1:78669119-78669138 | Msa1041140:CDS | 15.0% |
| !! | TTTGCTTATAAATCTATGTT+TGG | + | chr7_1:78663902-78663921 | Msa1041140:intron | 20.0% |
| !! | TACATAAACACTTATATGAT+AGG | - | chr7_1:78664202-78664221 | None:intergenic | 20.0% |
| !! | AGTGAAAATGTTTACTTATA+AGG | + | chr7_1:78664254-78664273 | Msa1041140:intron | 20.0% |
| !!! | TTTTTATAAGCTATATTAGG+GGG | + | chr7_1:78664286-78664305 | Msa1041140:intron | 20.0% |
| !! | ACCATTAATAACCAAAATAA+GGG | - | chr7_1:78664435-78664454 | None:intergenic | 20.0% |
| !! | AACCATTAATAACCAAAATA+AGG | - | chr7_1:78664436-78664455 | None:intergenic | 20.0% |
| !! | ACATTTCAGATATGTATTAT+CGG | + | chr7_1:78664665-78664684 | Msa1041140:intron | 20.0% |
| !!! | TACTTTATTTTTACTTGCAT+TGG | + | chr7_1:78664693-78664712 | Msa1041140:intron | 20.0% |
| !!! | TTGTATGCTAATTTTTAGTA+TGG | + | chr7_1:78664980-78664999 | Msa1041140:intron | 20.0% |
| !!! | TGTATGCTAATTTTTAGTAT+GGG | + | chr7_1:78664981-78665000 | Msa1041140:intron | 20.0% |
| !! | TGAAAGAAACATTCATATTT+CGG | - | chr7_1:78665034-78665053 | None:intergenic | 20.0% |
| !! | TTGAATAATATACTAGTAGA+TGG | + | chr7_1:78665308-78665327 | Msa1041140:intron | 20.0% |
| !! | TGAATAATATACTAGTAGAT+GGG | + | chr7_1:78665309-78665328 | Msa1041140:intron | 20.0% |
| !!! | ATATCTGAGATTTATCAAAA+GGG | - | chr7_1:78665560-78665579 | None:intergenic | 20.0% |
| !!! | AATATCTGAGATTTATCAAA+AGG | - | chr7_1:78665561-78665580 | None:intergenic | 20.0% |
| !!! | TTTATTCTTGTCCATTTTTT+AGG | + | chr7_1:78665969-78665988 | Msa1041140:intron | 20.0% |
| !!! | AACTTTTAAAGTTTGTATGT+AGG | + | chr7_1:78666317-78666336 | Msa1041140:intron | 20.0% |
| !! | TAATATTTATTTACCCTGAT+AGG | + | chr7_1:78666664-78666683 | Msa1041140:intron | 20.0% |
| !! | AATATTTATTTACCCTGATA+GGG | + | chr7_1:78666665-78666684 | Msa1041140:intron | 20.0% |
| !! | TGTCTTAGAAAAACTATATA+TGG | + | chr7_1:78666841-78666860 | Msa1041140:intron | 20.0% |
| !!! | TATTAGAAGAGATTTTTGAA+GGG | + | chr7_1:78667437-78667456 | Msa1041140:intron | 20.0% |
| !!! | CCAAAATAACTTGAATTTTT+TGG | - | chr7_1:78667622-78667641 | None:intergenic | 20.0% |
| !!! | CCAAAAAATTCAAGTTATTT+TGG | + | chr7_1:78667619-78667638 | Msa1041140:intron | 20.0% |
| !!! | TGTTTTGGTCAAAAAAAAAA+TGG | - | chr7_1:78667742-78667761 | None:intergenic | 20.0% |
| !! | GTCATTTAAATCTAAATCTT+AGG | - | chr7_1:78667883-78667902 | None:intergenic | 20.0% |
| !! | TAGTTTATGCAAATATTAGA+TGG | + | chr7_1:78668054-78668073 | Msa1041140:intron | 20.0% |
| !!! | GATCCTTGTTTTTTTTTTAA+AGG | + | chr7_1:78668086-78668105 | Msa1041140:intron | 20.0% |
| !! | TTGGTTAACTAACAAAAAAT+GGG | - | chr7_1:78669249-78669268 | None:intergenic | 20.0% |
| !! | ATTGGTTAACTAACAAAAAA+TGG | - | chr7_1:78669250-78669269 | None:intergenic | 20.0% |
| ! | GAATTAGAATTTGGGAATTA+GGG | - | chr7_1:78663704-78663723 | None:intergenic | 25.0% |
| ! | TGTGATTGGAATTAGAATTT+GGG | - | chr7_1:78663712-78663731 | None:intergenic | 25.0% |
| ! | ATGTGATTGGAATTAGAATT+TGG | - | chr7_1:78663713-78663732 | None:intergenic | 25.0% |
| ! | AGGAAAACAGAAAAATTACA+CGG | - | chr7_1:78663845-78663864 | None:intergenic | 25.0% |
| ! | AGAAGCTAATAAGAAATTTG+CGG | + | chr7_1:78664046-78664065 | Msa1041140:CDS | 25.0% |
| !! | TTTTATAAGCTATATTAGGG+GGG | + | chr7_1:78664287-78664306 | Msa1041140:intron | 25.0% |
| !!! | ATTAAGTTGAAAACAGCTTA+TGG | + | chr7_1:78664318-78664337 | Msa1041140:intron | 25.0% |
| !!! | TCCCTTATTTTGGTTATTAA+TGG | + | chr7_1:78664431-78664450 | Msa1041140:intron | 25.0% |
| !! | ATGTGATAGTGTTAACTTAT+AGG | - | chr7_1:78664649-78664668 | None:intergenic | 25.0% |
| ! | ATTATCACACTAACTGTAAT+CGG | + | chr7_1:78664799-78664818 | Msa1041140:intron | 25.0% |
| ! | GAATCAATAAAACCATATGA+AGG | - | chr7_1:78664827-78664846 | None:intergenic | 25.0% |
| !!! | GTATGCTAATTTTTAGTATG+GGG | + | chr7_1:78664982-78665001 | Msa1041140:intron | 25.0% |
| ! | AATGTTTCTTTCAGTTTCTT+TGG | + | chr7_1:78665041-78665060 | Msa1041140:intron | 25.0% |
| !! | GTATTTTCATTGAGAAAATC+AGG | + | chr7_1:78665610-78665629 | Msa1041140:intron | 25.0% |
| ! | TGTATTGTAATTATCAGGTT+TGG | + | chr7_1:78665792-78665811 | Msa1041140:intron | 25.0% |
| ! | AAAAATGGACAAGAATAAAC+AGG | - | chr7_1:78665968-78665987 | None:intergenic | 25.0% |
| !! | ACAAACTTTAAAAGTTTACC+TGG | - | chr7_1:78666313-78666332 | None:intergenic | 25.0% |
| !!! | ATATAGTTTTTCTAAGACAC+TGG | - | chr7_1:78666840-78666859 | None:intergenic | 25.0% |
| !!! | GAGTGTTTTTTTGTTTTGAA+TGG | + | chr7_1:78667107-78667126 | Msa1041140:intron | 25.0% |
| !!! | TTGTTTTGAATGGAGTATTA+TGG | + | chr7_1:78667117-78667136 | Msa1041140:intron | 25.0% |
| !! | CTATTAGAAGAGATTTTTGA+AGG | + | chr7_1:78667436-78667455 | Msa1041140:intron | 25.0% |
| ! | AAACAATGTTCAATACAAGA+AGG | + | chr7_1:78667784-78667803 | Msa1041140:intron | 25.0% |
| ! | AATCTTAGGTGAAGTTTATT+AGG | - | chr7_1:78667869-78667888 | None:intergenic | 25.0% |
| !! | AACTAATTTTCAGCTTAAAC+AGG | - | chr7_1:78668039-78668058 | None:intergenic | 25.0% |
| ! | TTTATGCAAATATTAGATGG+TGG | + | chr7_1:78668057-78668076 | Msa1041140:intron | 25.0% |
| ! | TTATGCAAATATTAGATGGT+GGG | + | chr7_1:78668058-78668077 | Msa1041140:intron | 25.0% |
| ! | CTTGACTAATTGAATGTTTA+TGG | + | chr7_1:78668317-78668336 | Msa1041140:intron | 25.0% |
| !! | CATTTGCTAACAAAAATGAA+AGG | - | chr7_1:78668435-78668454 | None:intergenic | 25.0% |
| ! | AAACTGTTCATATTAGCATA+TGG | - | chr7_1:78668497-78668516 | None:intergenic | 25.0% |
| ! | TTTAATACTTACTACAACAG+TGG | - | chr7_1:78668679-78668698 | None:intergenic | 25.0% |
| ! | TGGTTAACTAACAAAAAATG+GGG | - | chr7_1:78669248-78669267 | None:intergenic | 25.0% |
| !!! | CTAGGGATATTTTGTTTAAT+TGG | - | chr7_1:78669457-78669476 | None:intergenic | 25.0% |
| ! | ATTTCTTTCTTCAATTGCTA+GGG | - | chr7_1:78669474-78669493 | None:intergenic | 25.0% |
| ! | AGTATAAATTGTCAATCCTA+TGG | + | chr7_1:78669508-78669527 | Msa1041140:three_prime_UTR | 25.0% |
| GGAATTAGAATTTGGGAATT+AGG | - | chr7_1:78663705-78663724 | None:intergenic | 30.0% | |
| TTTCGAGAAACGGTAATAAA+AGG | - | chr7_1:78663865-78663884 | None:intergenic | 30.0% | |
| !! | TCAACAACATTTTCGAGAAA+CGG | - | chr7_1:78663875-78663894 | None:intergenic | 30.0% |
| ! | TTATTAGCTTCTTCATTTCC+CGG | - | chr7_1:78664038-78664057 | None:intergenic | 30.0% |
| TTTATAAGCTATATTAGGGG+GGG | + | chr7_1:78664288-78664307 | Msa1041140:intron | 30.0% | |
| ACTTATTCGAAATTATCGAG+TGG | - | chr7_1:78664399-78664418 | None:intergenic | 30.0% | |
| !! | ATACAAACAGTCCCTTATTT+TGG | + | chr7_1:78664421-78664440 | Msa1041140:intron | 30.0% |
| TTATGATAAGTATGGTGAAG+AGG | + | chr7_1:78664517-78664536 | Msa1041140:intron | 30.0% | |
| TATGATAAGTATGGTGAAGA+GGG | + | chr7_1:78664518-78664537 | Msa1041140:intron | 30.0% | |
| GTTAAGAACTAATCAAGCAA+AGG | - | chr7_1:78664627-78664646 | None:intergenic | 30.0% | |
| CTAAGAAAAGCAGTTATAGA+AGG | + | chr7_1:78664761-78664780 | Msa1041140:intron | 30.0% | |
| TAAAAATTGATGCAGACATG+AGG | - | chr7_1:78664859-78664878 | None:intergenic | 30.0% | |
| ATTATGTTGTCATGTGTAAG+TGG | + | chr7_1:78664922-78664941 | Msa1041140:intron | 30.0% | |
| !!! | TAATTTTTAGTATGGGGTTC+TGG | + | chr7_1:78664988-78665007 | Msa1041140:intron | 30.0% |
| AACCCTTGAAGATTTGTATA+TGG | + | chr7_1:78665133-78665152 | Msa1041140:CDS | 30.0% | |
| ACCCTTGAAGATTTGTATAT+GGG | + | chr7_1:78665134-78665153 | Msa1041140:CDS | 30.0% | |
| ACCCATATACAAATCTTCAA+GGG | - | chr7_1:78665138-78665157 | None:intergenic | 30.0% | |
| AATATACTAGTAGATGGGTA+TGG | + | chr7_1:78665314-78665333 | Msa1041140:intron | 30.0% | |
| ATATACTAGTAGATGGGTAT+GGG | + | chr7_1:78665315-78665334 | Msa1041140:intron | 30.0% | |
| AACTAAGAAGAACTGCTTTA+GGG | + | chr7_1:78665473-78665492 | Msa1041140:intron | 30.0% | |
| CCATGATAATACATGAATAG+TGG | - | chr7_1:78665647-78665666 | None:intergenic | 30.0% | |
| CCACTATTCATGTATTATCA+TGG | + | chr7_1:78665644-78665663 | Msa1041140:intron | 30.0% | |
| ATTGTAATTATCAGGTTTGG+AGG | + | chr7_1:78665795-78665814 | Msa1041140:intron | 30.0% | |
| TTGTAATTATCAGGTTTGGA+GGG | + | chr7_1:78665796-78665815 | Msa1041140:intron | 30.0% | |
| GACATTTCATTGTATGATTG+TGG | + | chr7_1:78666042-78666061 | Msa1041140:intron | 30.0% | |
| !!! | TTTTTTCCTTATGTGCTTGA+GGG | + | chr7_1:78666119-78666138 | Msa1041140:intron | 30.0% |
| TGCTAATGTCAAATACGTAA+GGG | + | chr7_1:78666241-78666260 | Msa1041140:CDS | 30.0% | |
| TAGACATGCTTATAAGTGTA+GGG | - | chr7_1:78666402-78666421 | None:intergenic | 30.0% | |
| TTAGACATGCTTATAAGTGT+AGG | - | chr7_1:78666403-78666422 | None:intergenic | 30.0% | |
| TTAAAAGCTAGCTATCAAAG+GGG | - | chr7_1:78666758-78666777 | None:intergenic | 30.0% | |
| CTTAAAAGCTAGCTATCAAA+GGG | - | chr7_1:78666759-78666778 | None:intergenic | 30.0% | |
| !!! | CTTTGATAGCTAGCTTTTAA+GGG | + | chr7_1:78666758-78666777 | Msa1041140:intron | 30.0% |
| !! | TTAAGAGAAGTGCTATGATA+GGG | + | chr7_1:78666925-78666944 | Msa1041140:intron | 30.0% |
| AATACAAAATCCCCCTAATT+TGG | + | chr7_1:78667400-78667419 | Msa1041140:intron | 30.0% | |
| ATACAAAATCCCCCTAATTT+GGG | + | chr7_1:78667401-78667420 | Msa1041140:intron | 30.0% | |
| !!! | TTTTGAGTTTCCCCAAATTA+GGG | - | chr7_1:78667415-78667434 | None:intergenic | 30.0% |
| !!! | ATTTTGAGTTTCCCCAAATT+AGG | - | chr7_1:78667416-78667435 | None:intergenic | 30.0% |
| !!! | AATTTTTTGGCTCAAGCTAA+AGG | - | chr7_1:78667609-78667628 | None:intergenic | 30.0% |
| TGTGAATCAAGTCAAATGAT+AGG | - | chr7_1:78667905-78667924 | None:intergenic | 30.0% | |
| TTTCACTCCTCTATATTACT+TGG | - | chr7_1:78668145-78668164 | None:intergenic | 30.0% | |
| AAAGATGGAAAATGGATCAA+GGG | - | chr7_1:78668207-78668226 | None:intergenic | 30.0% | |
| ! | AATAACACTTTGAGAATGGT+TGG | - | chr7_1:78668234-78668253 | None:intergenic | 30.0% |
| ! | GCAAAATAACACTTTGAGAA+TGG | - | chr7_1:78668238-78668257 | None:intergenic | 30.0% |
| ! | ACCTCATGAACTTTTCAAAA+GGG | + | chr7_1:78668531-78668550 | Msa1041140:CDS | 30.0% |
| TTTAGTTGTACCTTACCTTT+CGG | + | chr7_1:78668614-78668633 | Msa1041140:intron | 30.0% | |
| GTATTAAACAGTAACTAGCA+TGG | + | chr7_1:78668691-78668710 | Msa1041140:intron | 30.0% | |
| ! | AGGTGTGTTTCAATGTTTTT+GGG | - | chr7_1:78668944-78668963 | None:intergenic | 30.0% |
| ! | TAGGTGTGTTTCAATGTTTT+TGG | - | chr7_1:78668945-78668964 | None:intergenic | 30.0% |
| AGGGACAAAAGAAATATGTT+AGG | - | chr7_1:78668964-78668983 | None:intergenic | 30.0% | |
| TTCTTGGTTAGAATACATTC+AGG | + | chr7_1:78669135-78669154 | Msa1041140:exon | 30.0% | |
| GGTTAACTAACAAAAAATGG+GGG | - | chr7_1:78669247-78669266 | None:intergenic | 30.0% | |
| ATCAAAATAGCACCACAATA+AGG | - | chr7_1:78669336-78669355 | None:intergenic | 30.0% | |
| CATTTCTTTCTTCAATTGCT+AGG | - | chr7_1:78669475-78669494 | None:intergenic | 30.0% | |
| AATCGCTTCTTCTATTACGA+CGG | - | chr7_1:78663640-78663659 | None:intergenic | 35.0% | |
| GAATTTGGGAATTAGGGTTT+GGG | - | chr7_1:78663698-78663717 | None:intergenic | 35.0% | |
| AGAATTTGGGAATTAGGGTT+TGG | - | chr7_1:78663699-78663718 | None:intergenic | 35.0% | |
| ACAGAGAAGGAACAACAATT+TGG | - | chr7_1:78663794-78663813 | None:intergenic | 35.0% | |
| ACAGAAAAATTACACGGCAA+TGG | - | chr7_1:78663839-78663858 | None:intergenic | 35.0% | |
| !! | GATATACTTCAAGTGTCGAA+AGG | + | chr7_1:78663945-78663964 | Msa1041140:CDS | 35.0% |
| GTATCATCCTGATAAGAATC+CGG | + | chr7_1:78664016-78664035 | Msa1041140:CDS | 35.0% | |
| TATCATCCTGATAAGAATCC+GGG | + | chr7_1:78664017-78664036 | Msa1041140:CDS | 35.0% | |
| AAATTTGCGGAGATTAGCAA+TGG | + | chr7_1:78664059-78664078 | Msa1041140:CDS | 35.0% | |
| AACTAATCAAGCAAAGGCTA+AGG | - | chr7_1:78664621-78664640 | None:intergenic | 35.0% | |
| AGCAGTTATAGAAGGCTATT+AGG | + | chr7_1:78664769-78664788 | Msa1041140:intron | 35.0% | |
| GCAGTTATAGAAGGCTATTA+GGG | + | chr7_1:78664770-78664789 | Msa1041140:intron | 35.0% | |
| TGCTATGTTCTTGATGTGTA+TGG | + | chr7_1:78664947-78664966 | Msa1041140:intron | 35.0% | |
| GCTATGTTCTTGATGTGTAT+GGG | + | chr7_1:78664948-78664967 | Msa1041140:intron | 35.0% | |
| CTATGTTCTTGATGTGTATG+GGG | + | chr7_1:78664949-78664968 | Msa1041140:intron | 35.0% | |
| GTTTCTTTCAGTTTCTTTGG+CGG | + | chr7_1:78665044-78665063 | Msa1041140:intron | 35.0% | |
| TTTCTTTCAGTTTCTTTGGC+GGG | + | chr7_1:78665045-78665064 | Msa1041140:intron | 35.0% | |
| GAAGAAGAGAAAATTGCGAA+AGG | + | chr7_1:78665083-78665102 | Msa1041140:CDS | 35.0% | |
| CACCCATATACAAATCTTCA+AGG | - | chr7_1:78665139-78665158 | None:intergenic | 35.0% | |
| CTTGAAGATTTGTATATGGG+TGG | + | chr7_1:78665137-78665156 | Msa1041140:CDS | 35.0% | |
| GACACATATATGTTACCCAT+TGG | - | chr7_1:78665240-78665259 | None:intergenic | 35.0% | |
| TAGATTCGAGACTATCATAC+TGG | + | chr7_1:78665339-78665358 | Msa1041140:intron | 35.0% | |
| CAACTAAGAAGAACTGCTTT+AGG | + | chr7_1:78665472-78665491 | Msa1041140:intron | 35.0% | |
| ACTAAGAAGAACTGCTTTAG+GGG | + | chr7_1:78665474-78665493 | Msa1041140:intron | 35.0% | |
| GGAAATAAAGAATAGCCTCT+GGG | - | chr7_1:78665539-78665558 | None:intergenic | 35.0% | |
| TGGTGTAGTTGTAAACTAAG+TGG | + | chr7_1:78665664-78665683 | Msa1041140:intron | 35.0% | |
| ACTTGCGAATTCTACACTTT+GGG | - | chr7_1:78665744-78665763 | None:intergenic | 35.0% | |
| GTAGAAATGAGGTTTATCAC+AGG | + | chr7_1:78665864-78665883 | Msa1041140:CDS | 35.0% | |
| AGGTTTATCACAGGCAAATT+GGG | + | chr7_1:78665873-78665892 | Msa1041140:CDS | 35.0% | |
| ! | GTCATTTGTTGAAACATTCC+AGG | - | chr7_1:78665899-78665918 | None:intergenic | 35.0% |
| GCACATAAGGAAAAAAGACA+AGG | - | chr7_1:78666115-78666134 | None:intergenic | 35.0% | |
| !!! | CTTTTTTCCTTATGTGCTTG+AGG | + | chr7_1:78666118-78666137 | Msa1041140:intron | 35.0% |
| ! | TTTTTCCTTATGTGCTTGAG+GGG | + | chr7_1:78666120-78666139 | Msa1041140:intron | 35.0% |
| GTGCTAATGTCAAATACGTA+AGG | + | chr7_1:78666240-78666259 | Msa1041140:CDS | 35.0% | |
| TAATGTCAAATACGTAAGGG+AGG | + | chr7_1:78666244-78666263 | Msa1041140:CDS | 35.0% | |
| AATGTCAAATACGTAAGGGA+GGG | + | chr7_1:78666245-78666264 | Msa1041140:CDS | 35.0% | |
| GTCACTGTTGATATTGAGAA+AGG | + | chr7_1:78666275-78666294 | Msa1041140:CDS | 35.0% | |
| ! | ATTGAGAAAGGCATGAAAGA+TGG | + | chr7_1:78666287-78666306 | Msa1041140:CDS | 35.0% |
| GTGTAGGGCTTATAAGAAAA+TGG | - | chr7_1:78666387-78666406 | None:intergenic | 35.0% | |
| CCTTAAAAGCTAGCTATCAA+AGG | - | chr7_1:78666760-78666779 | None:intergenic | 35.0% | |
| !!! | CCTTTGATAGCTAGCTTTTA+AGG | + | chr7_1:78666757-78666776 | Msa1041140:intron | 35.0% |
| !! | CTTAAGAGAAGTGCTATGAT+AGG | + | chr7_1:78666924-78666943 | Msa1041140:intron | 35.0% |
| ATGATAGGGACTTGCATATT+AGG | + | chr7_1:78666939-78666958 | Msa1041140:intron | 35.0% | |
| TGATAGGGACTTGCATATTA+GGG | + | chr7_1:78666940-78666959 | Msa1041140:intron | 35.0% | |
| CGTACAATAAACCAAATGGT+GGG | - | chr7_1:78667014-78667033 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAAGAGGGTA+AGG | - | chr7_1:78667040-78667059 | None:intergenic | 35.0% | |
| ! | TTACCCTCTTTTTACACAAG+AGG | + | chr7_1:78667039-78667058 | Msa1041140:intron | 35.0% |
| TTTCCAGGACTTGCATATTA+TGG | + | chr7_1:78667085-78667104 | Msa1041140:intron | 35.0% | |
| !!! | TGCTTGTTTTAGTCCTTAAG+TGG | + | chr7_1:78667172-78667191 | Msa1041140:intron | 35.0% |
| AGCTATGCATATGGTCATTT+GGG | - | chr7_1:78667262-78667281 | None:intergenic | 35.0% | |
| TCAGTGGTTCTTACTACTTT+AGG | + | chr7_1:78667281-78667300 | Msa1041140:intron | 35.0% | |
| CAGTGGTTCTTACTACTTTA+GGG | + | chr7_1:78667282-78667301 | Msa1041140:intron | 35.0% | |
| !! | TTACTACTTTAGGGTCTGTT+TGG | + | chr7_1:78667291-78667310 | Msa1041140:intron | 35.0% |
| !! | TACTACTTTAGGGTCTGTTT+GGG | + | chr7_1:78667292-78667311 | Msa1041140:intron | 35.0% |
| TACAAAATCCCCCTAATTTG+GGG | + | chr7_1:78667402-78667421 | Msa1041140:intron | 35.0% | |
| ! | TTTGAGTTTCCCCAAATTAG+GGG | - | chr7_1:78667414-78667433 | None:intergenic | 35.0% |
| AAAGGCTCTATTTGGGAATT+TGG | - | chr7_1:78667591-78667610 | None:intergenic | 35.0% | |
| TCAAGCTAAAGGCTCTATTT+GGG | - | chr7_1:78667598-78667617 | None:intergenic | 35.0% | |
| ! | AAATTTTCTCAGCTGATCAG+TGG | + | chr7_1:78667703-78667722 | Msa1041140:intron | 35.0% |
| TGAAGTTTATTAGGCGACAA+GGG | - | chr7_1:78667860-78667879 | None:intergenic | 35.0% | |
| TTGCAGCTAACTCTATCAAA+TGG | + | chr7_1:78667952-78667971 | Msa1041140:intron | 35.0% | |
| TGCAGCTAACTCTATCAAAT+GGG | + | chr7_1:78667953-78667972 | Msa1041140:intron | 35.0% | |
| CTAACTCTATCAAATGGGAA+AGG | + | chr7_1:78667958-78667977 | Msa1041140:intron | 35.0% | |
| ! | ACGACCTAGCTTCAATTTTA+AGG | + | chr7_1:78668008-78668027 | Msa1041140:intron | 35.0% |
| ! | CGACCTAGCTTCAATTTTAA+GGG | + | chr7_1:78668009-78668028 | Msa1041140:intron | 35.0% |
| ACACCCTTAAAATTGAAGCT+AGG | - | chr7_1:78668015-78668034 | None:intergenic | 35.0% | |
| ! | CCTCTATATTACTTGGTAGT+CGG | - | chr7_1:78668138-78668157 | None:intergenic | 35.0% |
| ! | TGTGGCATATTCAAAGCTTT+TGG | - | chr7_1:78668169-78668188 | None:intergenic | 35.0% |
| GGGTAAAAAAGAAAGTAGTG+TGG | - | chr7_1:78668187-78668206 | None:intergenic | 35.0% | |
| GAAAGATGGAAAATGGATCA+AGG | - | chr7_1:78668208-78668227 | None:intergenic | 35.0% | |
| TTGGTGAGAAAGATGGAAAA+TGG | - | chr7_1:78668215-78668234 | None:intergenic | 35.0% | |
| CAATTAGTCAAGTTTCGACT+TGG | - | chr7_1:78668309-78668328 | None:intergenic | 35.0% | |
| !!! | GCAATTTTTTGTCCTTTCAC+AGG | + | chr7_1:78668339-78668358 | Msa1041140:intron | 35.0% |
| !!! | ATTTTTTGTCCTTTCACAGG+AGG | + | chr7_1:78668342-78668361 | Msa1041140:intron | 35.0% |
| CCAGATTCTCCATCAATTAT+GGG | - | chr7_1:78668391-78668410 | None:intergenic | 35.0% | |
| TCCAGATTCTCCATCAATTA+TGG | - | chr7_1:78668392-78668411 | None:intergenic | 35.0% | |
| ATGGAGAATCTGGAGATTTA+AGG | + | chr7_1:78668398-78668417 | Msa1041140:CDS | 35.0% | |
| TGGAGAATCTGGAGATTTAA+GGG | + | chr7_1:78668399-78668418 | Msa1041140:CDS | 35.0% | |
| ! | CACCTCATGAACTTTTCAAA+AGG | + | chr7_1:78668530-78668549 | Msa1041140:CDS | 35.0% |
| !! | TCCCTTTTGAAAAGTTCATG+AGG | - | chr7_1:78668535-78668554 | None:intergenic | 35.0% |
| ! | CATGAACTTTTCAAAAGGGA+AGG | + | chr7_1:78668535-78668554 | Msa1041140:CDS | 35.0% |
| TATCCAAAATCCGAAAGGTA+AGG | - | chr7_1:78668627-78668646 | None:intergenic | 35.0% | |
| AGTGTTATCCAAAATCCGAA+AGG | - | chr7_1:78668632-78668651 | None:intergenic | 35.0% | |
| ! | ACACTTGTTGATTGTGCAAA+CGG | + | chr7_1:78668729-78668748 | Msa1041140:intron | 35.0% |
| ! | ATGTTCATCAAGGTGTTCAA+CGG | - | chr7_1:78668848-78668867 | None:intergenic | 35.0% |
| TGAACACCTTGATGAACATT+TGG | + | chr7_1:78668849-78668868 | Msa1041140:CDS | 35.0% | |
| TGTCTACCAAATGTTCATCA+AGG | - | chr7_1:78668858-78668877 | None:intergenic | 35.0% | |
| TCTTCTTTGCTGCTCTTAAT+TGG | + | chr7_1:78668903-78668922 | Msa1041140:intron | 35.0% | |
| !!! | TGTTTCAATGTTTTTGGGGT+GGG | - | chr7_1:78668939-78668958 | None:intergenic | 35.0% |
| !! | GGTGTGTTTCAATGTTTTTG+GGG | - | chr7_1:78668943-78668962 | None:intergenic | 35.0% |
| ! | ACATATTTCTTTTGTCCCTC+AGG | + | chr7_1:78668965-78668984 | Msa1041140:intron | 35.0% |
| ! | CATATTTCTTTTGTCCCTCA+GGG | + | chr7_1:78668966-78668985 | Msa1041140:intron | 35.0% |
| TCACAAATCCAAAGCAAGTA+AGG | + | chr7_1:78668991-78669010 | Msa1041140:CDS | 35.0% | |
| TTGAACTTCCTTACTTGCTT+TGG | - | chr7_1:78669002-78669021 | None:intergenic | 35.0% | |
| AAGCAAGTAAGGAAGTTCAA+AGG | + | chr7_1:78669002-78669021 | Msa1041140:CDS | 35.0% | |
| AGCAAGTAAGGAAGTTCAAA+GGG | + | chr7_1:78669003-78669022 | Msa1041140:CDS | 35.0% | |
| TTCTTTGTGCTCATATGCAA+TGG | - | chr7_1:78669038-78669057 | None:intergenic | 35.0% | |
| TTGCATATGAGCACAAAGAA+AGG | + | chr7_1:78669038-78669057 | Msa1041140:CDS | 35.0% | |
| !!! | AGATCTTTACGTCACTTTTG+AGG | + | chr7_1:78669061-78669080 | Msa1041140:CDS | 35.0% |
| GTCCTCAATGTAACATGATT+AGG | + | chr7_1:78669181-78669200 | Msa1041140:three_prime_UTR | 35.0% | |
| CACCTAATCATGTTACATTG+AGG | - | chr7_1:78669186-78669205 | None:intergenic | 35.0% | |
| CTCAATGTAACATGATTAGG+TGG | + | chr7_1:78669184-78669203 | Msa1041140:three_prime_UTR | 35.0% | |
| TTACAACAAATACACGCCTT+AGG | + | chr7_1:78669214-78669233 | Msa1041140:three_prime_UTR | 35.0% | |
| !!! | TGTGGTGCTATTTTGATACA+AGG | + | chr7_1:78669339-78669358 | Msa1041140:three_prime_UTR | 35.0% |
| AAATCCCTGAGATTGCGTTT+CGG | + | chr7_1:78663735-78663754 | Msa1041140:five_prime_UTR | 40.0% | |
| TTGATGCGCCATTGAAGATT+CGG | - | chr7_1:78663767-78663786 | None:intergenic | 40.0% | |
| AATAGCATAGAGCACAGAGA+AGG | - | chr7_1:78663807-78663826 | None:intergenic | 40.0% | |
| TCATTTCCCGGATTCTTATC+AGG | - | chr7_1:78664026-78664045 | None:intergenic | 40.0% | |
| AGACTGCTTGAAAGAGCTTA+TGG | - | chr7_1:78664362-78664381 | None:intergenic | 40.0% | |
| !! | GTCAGCATATGAGGTATTGT+CGG | + | chr7_1:78664475-78664494 | Msa1041140:intron | 40.0% |
| CTGTAATCGGAACCTTCATA+TGG | + | chr7_1:78664812-78664831 | Msa1041140:intron | 40.0% | |
| TTCTTTCAGTTTCTTTGGCG+GGG | + | chr7_1:78665046-78665065 | Msa1041140:intron | 40.0% | |
| ! | CGACGACGTTATTGTTGATT+TGG | + | chr7_1:78665106-78665125 | Msa1041140:CDS | 40.0% |
| GGGAAATAAAGAATAGCCTC+TGG | - | chr7_1:78665540-78665559 | None:intergenic | 40.0% | |
| GACTTGCGAATTCTACACTT+TGG | - | chr7_1:78665745-78665764 | None:intergenic | 40.0% | |
| ACGCTGTAACTGTAGAAATG+AGG | + | chr7_1:78665853-78665872 | Msa1041140:CDS | 40.0% | |
| GAGGTTTATCACAGGCAAAT+TGG | + | chr7_1:78665872-78665891 | Msa1041140:CDS | 40.0% | |
| GTTTCAACAAATGACAGAGC+AGG | + | chr7_1:78665904-78665923 | Msa1041140:CDS | 40.0% | |
| GCAGGTAAATATCATCTTCG+AGG | + | chr7_1:78665922-78665941 | Msa1041140:intron | 40.0% | |
| ! | ATTTTGCCCTGCAAATACAC+TGG | + | chr7_1:78665998-78666017 | Msa1041140:intron | 40.0% |
| TAGAAGCCAGTGTATTTGCA+GGG | - | chr7_1:78666007-78666026 | None:intergenic | 40.0% | |
| TATTTACCCTGATAGGGACT+TGG | + | chr7_1:78666671-78666690 | Msa1041140:intron | 40.0% | |
| TAATAGCCAAGTCCCTATCA+GGG | - | chr7_1:78666680-78666699 | None:intergenic | 40.0% | |
| ATGCGATGCTCTAATTAGCT+TGG | + | chr7_1:78666728-78666747 | Msa1041140:intron | 40.0% | |
| TCATAAGCACTCAAGCACTT+GGG | - | chr7_1:78666797-78666816 | None:intergenic | 40.0% | |
| TTCATAAGCACTCAAGCACT+TGG | - | chr7_1:78666798-78666817 | None:intergenic | 40.0% | |
| GTGCTTGAGTGCTTATGAAA+TGG | + | chr7_1:78666799-78666818 | Msa1041140:intron | 40.0% | |
| AGTGCTTATGAAATGGTACC+TGG | + | chr7_1:78666806-78666825 | Msa1041140:intron | 40.0% | |
| GTGCTTATGAAATGGTACCT+GGG | + | chr7_1:78666807-78666826 | Msa1041140:intron | 40.0% | |
| ATATGGAAGAGACACCAGAA+AGG | + | chr7_1:78666858-78666877 | Msa1041140:intron | 40.0% | |
| TTAAGTGCCAAACGACTCAA+TGG | - | chr7_1:78666909-78666928 | None:intergenic | 40.0% | |
| GCGTACAATAAACCAAATGG+TGG | - | chr7_1:78667015-78667034 | None:intergenic | 40.0% | |
| GCTGCGTACAATAAACCAAA+TGG | - | chr7_1:78667018-78667037 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAAGA+GGG | - | chr7_1:78667045-78667064 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAG+AGG | - | chr7_1:78667046-78667065 | None:intergenic | 40.0% | |
| ATATGCAAGTCCTGGAAACA+GGG | - | chr7_1:78667083-78667102 | None:intergenic | 40.0% | |
| AATATGCAAGTCCTGGAAAC+AGG | - | chr7_1:78667084-78667103 | None:intergenic | 40.0% | |
| ACTCCATAATATGCAAGTCC+TGG | - | chr7_1:78667091-78667110 | None:intergenic | 40.0% | |
| !! | GTTTTAGTCCTTAAGTGGCT+TGG | + | chr7_1:78667177-78667196 | Msa1041140:intron | 40.0% |
| GAGCTATGCATATGGTCATT+TGG | - | chr7_1:78667263-78667282 | None:intergenic | 40.0% | |
| !! | ACTACTTTAGGGTCTGTTTG+GGG | + | chr7_1:78667293-78667312 | Msa1041140:intron | 40.0% |
| TTGAGTTTCCCCAAATTAGG+GGG | - | chr7_1:78667413-78667432 | None:intergenic | 40.0% | |
| ATTTGGGAATTTGGAGGGAA+GGG | - | chr7_1:78667582-78667601 | None:intergenic | 40.0% | |
| TATTTGGGAATTTGGAGGGA+AGG | - | chr7_1:78667583-78667602 | None:intergenic | 40.0% | |
| GCTCTATTTGGGAATTTGGA+GGG | - | chr7_1:78667587-78667606 | None:intergenic | 40.0% | |
| CTCAAGCTAAAGGCTCTATT+TGG | - | chr7_1:78667599-78667618 | None:intergenic | 40.0% | |
| GTGAAGTTTATTAGGCGACA+AGG | - | chr7_1:78667861-78667880 | None:intergenic | 40.0% | |
| CCGACTACCAAGTAATATAG+AGG | + | chr7_1:78668135-78668154 | Msa1041140:intron | 40.0% | |
| !! | AGAATGGTTGGTGAGAAAGA+TGG | - | chr7_1:78668222-78668241 | None:intergenic | 40.0% |
| AAAATAGCACCTCCTGTGAA+AGG | - | chr7_1:78668354-78668373 | None:intergenic | 40.0% | |
| !!! | ACAGGAGGTGCTATTTTATG+AGG | + | chr7_1:78668357-78668376 | Msa1041140:intron | 40.0% |
| !!! | GAGGTGCTATTTTATGAGGA+CGG | + | chr7_1:78668361-78668380 | Msa1041140:CDS | 40.0% |
| CCCATAATTGATGGAGAATC+TGG | + | chr7_1:78668388-78668407 | Msa1041140:CDS | 40.0% | |
| CACGCTGGTAAGTATAATCA+TGG | + | chr7_1:78668585-78668604 | Msa1041140:intron | 40.0% | |
| ! | GTACCTTACCTTTCGGATTT+TGG | + | chr7_1:78668621-78668640 | Msa1041140:intron | 40.0% |
| AGTAACTAGCATGGAAGAGT+TGG | + | chr7_1:78668700-78668719 | Msa1041140:intron | 40.0% | |
| GTGTAACCTTGATCTCCTTT+AGG | + | chr7_1:78668795-78668814 | Msa1041140:intron | 40.0% | |
| CTTGAACCTAAAGGAGATCA+AGG | - | chr7_1:78668804-78668823 | None:intergenic | 40.0% | |
| CAACAAGAGCTTGAACCTAA+AGG | - | chr7_1:78668813-78668832 | None:intergenic | 40.0% | |
| ! | CTTTAGGTTCAAGCTCTTGT+TGG | + | chr7_1:78668811-78668830 | Msa1041140:intron | 40.0% |
| TTTGGTAGACATAAGCTCGA+AGG | + | chr7_1:78668867-78668886 | Msa1041140:CDS | 40.0% | |
| !!! | GTGTTTCAATGTTTTTGGGG+TGG | - | chr7_1:78668940-78668959 | None:intergenic | 40.0% |
| TTGGATTTGTGATTCCCTGA+GGG | - | chr7_1:78668983-78669002 | None:intergenic | 40.0% | |
| TTTGGATTTGTGATTCCCTG+AGG | - | chr7_1:78668984-78669003 | None:intergenic | 40.0% | |
| GCAAGTAAGGAAGTTCAAAG+GGG | + | chr7_1:78669004-78669023 | Msa1041140:CDS | 40.0% | |
| ! | TGGTTTTCATCTTGTGAGCA+AGG | + | chr7_1:78669421-78669440 | Msa1041140:three_prime_UTR | 40.0% |
| ACTCCATAGTCAAGTCTTCG+CGG | + | chr7_1:78663580-78663599 | Msa1041140:five_prime_UTR | 45.0% | |
| TTTCCGCGAAGACTTGACTA+TGG | - | chr7_1:78663586-78663605 | None:intergenic | 45.0% | |
| ! | ACGGAAGCTTTTACAGTGAC+AGG | - | chr7_1:78663621-78663640 | None:intergenic | 45.0% |
| CTCAGGGATTTCGATGTGAT+TGG | - | chr7_1:78663726-78663745 | None:intergenic | 45.0% | |
| GGAGAGATCCGAATCTTCAA+TGG | + | chr7_1:78663756-78663775 | Msa1041140:exon | 45.0% | |
| !! | TCAAGTGTCGAAAGGTGCAT+CGG | + | chr7_1:78663953-78663972 | Msa1041140:CDS | 45.0% |
| AGCTATATTAGGGGGGGTTA+TGG | + | chr7_1:78664294-78664313 | Msa1041140:intron | 45.0% | |
| !!! | GGGTTCTGGACTTGCTTTTA+TGG | + | chr7_1:78665002-78665021 | Msa1041140:intron | 45.0% |
| TCTTTCAGTTTCTTTGGCGG+GGG | + | chr7_1:78665047-78665066 | Msa1041140:intron | 45.0% | |
| GTATATGGGTGGTTCCTTGA+AGG | + | chr7_1:78665148-78665167 | Msa1041140:CDS | 45.0% | |
| TAAATGTGACCGCACCTTCA+AGG | - | chr7_1:78665165-78665184 | None:intergenic | 45.0% | |
| CTGACATCATGTATTCCCAG+AGG | + | chr7_1:78665521-78665540 | Msa1041140:intron | 45.0% | |
| AATGTTGTAAAGCCAGCTCC+TGG | + | chr7_1:78665824-78665843 | Msa1041140:CDS | 45.0% | |
| ! | CAGTTACAGCGTCTTTTTCC+AGG | - | chr7_1:78665845-78665864 | None:intergenic | 45.0% |
| CTAGAAGCCAGTGTATTTGC+AGG | - | chr7_1:78666008-78666027 | None:intergenic | 45.0% | |
| TGTGTGATATCTACCTGTCC+AGG | + | chr7_1:78666205-78666224 | Msa1041140:intron | 45.0% | |
| TAGCACATTGATCACAGACC+TGG | - | chr7_1:78666226-78666245 | None:intergenic | 45.0% | |
| GTAATAGCCAAGTCCCTATC+AGG | - | chr7_1:78666681-78666700 | None:intergenic | 45.0% | |
| GATAGGGACTTGGCTATTAC+TGG | + | chr7_1:78666681-78666700 | Msa1041140:intron | 45.0% | |
| AAAGCTAGCTATCAAAGGGG+AGG | - | chr7_1:78666755-78666774 | None:intergenic | 45.0% | |
| TTATGAAATGGTACCTGGGC+AGG | + | chr7_1:78666811-78666830 | Msa1041140:intron | 45.0% | |
| AGTGCATCCATTGAGTCGTT+TGG | + | chr7_1:78666899-78666918 | Msa1041140:intron | 45.0% | |
| ACTTGCATATTAGGGCAACC+CGG | + | chr7_1:78666948-78666967 | Msa1041140:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr7_1:78667050-78667069 | Msa1041140:intron | 45.0% |
| GGGAAAAACCAAGCCACTTA+AGG | - | chr7_1:78667188-78667207 | None:intergenic | 45.0% | |
| !!! | AAGTGGCTTGGTTTTTCCCA+TGG | + | chr7_1:78667189-78667208 | Msa1041140:intron | 45.0% |
| !!! | TCCCATGGCAGCTAGTTTTA+CGG | + | chr7_1:78667204-78667223 | Msa1041140:intron | 45.0% |
| TGACCATATGCATAGCTCAG+TGG | + | chr7_1:78667265-78667284 | Msa1041140:intron | 45.0% | |
| GAACCACTGAGCTATGCATA+TGG | - | chr7_1:78667271-78667290 | None:intergenic | 45.0% | |
| !! | CTACTTTAGGGTCTGTTTGG+GGG | + | chr7_1:78667294-78667313 | Msa1041140:intron | 45.0% |
| ! | TCTGTTTGGGGGTTTAGGAT+TGG | + | chr7_1:78667305-78667324 | Msa1041140:intron | 45.0% |
| ! | TTTGGGGGTTTAGGATTGGA+GGG | + | chr7_1:78667309-78667328 | Msa1041140:intron | 45.0% |
| !!! | AAGGAATGGAGGGTTTTAGG+AGG | + | chr7_1:78667347-78667366 | Msa1041140:intron | 45.0% |
| !!! | AATGGAGGGTTTTAGGAGGA+AGG | + | chr7_1:78667351-78667370 | Msa1041140:intron | 45.0% |
| !!! | ATGGAGGGTTTTAGGAGGAA+GGG | + | chr7_1:78667352-78667371 | Msa1041140:intron | 45.0% |
| !!! | GTTTTAGGAGGAAGGGCTTT+GGG | + | chr7_1:78667359-78667378 | Msa1041140:intron | 45.0% |
| !! | TTTTAGGAGGAAGGGCTTTG+GGG | + | chr7_1:78667360-78667379 | Msa1041140:intron | 45.0% |
| TTTGGGAATTTGGAGGGAAG+GGG | - | chr7_1:78667581-78667600 | None:intergenic | 45.0% | |
| GGCTCTATTTGGGAATTTGG+AGG | - | chr7_1:78667588-78667607 | None:intergenic | 45.0% | |
| ACACGGTTGCTCATGTTCTT+GGG | - | chr7_1:78667836-78667855 | None:intergenic | 45.0% | |
| AACACGGTTGCTCATGTTCT+TGG | - | chr7_1:78667837-78667856 | None:intergenic | 45.0% | |
| TATTAGGCGACAAGGGAACA+CGG | - | chr7_1:78667853-78667872 | None:intergenic | 45.0% | |
| GTCGGAACTGATGTCAAACA+AGG | - | chr7_1:78668120-78668139 | None:intergenic | 45.0% | |
| !! | AAAGTTCATGAGGTGCTGTG+CGG | - | chr7_1:78668525-78668544 | None:intergenic | 45.0% |
| AGTAAGGAAGTTCAAAGGGG+AGG | + | chr7_1:78669007-78669026 | Msa1041140:CDS | 45.0% | |
| GTAAGGAAGTTCAAAGGGGA+GGG | + | chr7_1:78669008-78669027 | Msa1041140:CDS | 45.0% | |
| TTTCTGTTCCTCCGATAGTG+AGG | - | chr7_1:78669099-78669118 | None:intergenic | 45.0% | |
| GCATCTACTGTGATCCTTGT+CGG | + | chr7_1:78669300-78669319 | Msa1041140:three_prime_UTR | 45.0% | |
| ! | AGCTTGCTTTGTGTCTGCAA+TGG | + | chr7_1:78669401-78669420 | Msa1041140:three_prime_UTR | 45.0% |
| CATCTTGTGAGCAAGGTGAA+AGG | + | chr7_1:78669428-78669447 | Msa1041140:three_prime_UTR | 45.0% | |
| !! | AAATAAATATTATAATTGTT+GGG | - | chr7_1:78666656-78666675 | None:intergenic | 5.0% |
| !! | TAAATAAATATTATAATTGT+TGG | - | chr7_1:78666657-78666676 | None:intergenic | 5.0% |
| !! | AATTTAATAATATCAATAAA+AGG | - | chr7_1:78667688-78667707 | None:intergenic | 5.0% |
| TATGGAGTCGACACTACGCT+AGG | - | chr7_1:78663568-78663587 | None:intergenic | 50.0% | |
| ! | AGCTTTTACAGTGACAGGCG+TGG | - | chr7_1:78663616-78663635 | None:intergenic | 50.0% |
| CTCTCCGAAACGCAATCTCA+GGG | - | chr7_1:78663742-78663761 | None:intergenic | 50.0% | |
| TCTCTCCGAAACGCAATCTC+AGG | - | chr7_1:78663743-78663762 | None:intergenic | 50.0% | |
| GTTGCTGCTGTCAGCATATG+AGG | + | chr7_1:78664466-78664485 | Msa1041140:intron | 50.0% | |
| !! | AGGTGGTGGAATGAACATGC+AGG | + | chr7_1:78664571-78664590 | Msa1041140:CDS | 50.0% |
| TCTTGATGTGTATGGGGCTC+TGG | + | chr7_1:78664955-78664974 | Msa1041140:intron | 50.0% | |
| TTTCTTTGGCGGGGGATCAA+TGG | + | chr7_1:78665055-78665074 | Msa1041140:CDS | 50.0% | |
| !!! | ACTGGTTTTCACGTGACACG+CGG | + | chr7_1:78665357-78665376 | Msa1041140:intron | 50.0% |
| TATCACAGGCAAATTGGGCC+TGG | + | chr7_1:78665878-78665897 | Msa1041140:CDS | 50.0% | |
| CTTATGTGCTTGAGGGGACT+GGG | + | chr7_1:78666126-78666145 | Msa1041140:intron | 50.0% | |
| TTATGTGCTTGAGGGGACTG+GGG | + | chr7_1:78666127-78666146 | Msa1041140:intron | 50.0% | |
| CATTGATCACAGACCTGGAC+AGG | - | chr7_1:78666221-78666240 | None:intergenic | 50.0% | |
| ! | GAAAGGCATGAAAGATGGCC+AGG | + | chr7_1:78666292-78666311 | Msa1041140:CDS | 50.0% |
| CACTCAAGCACTTGGGAGTT+GGG | - | chr7_1:78666790-78666809 | None:intergenic | 50.0% | |
| ATTGAAGCTCCCGCATATGC+AGG | + | chr7_1:78666974-78666993 | Msa1041140:intron | 50.0% | |
| TTGAAGCTCCCGCATATGCA+GGG | + | chr7_1:78666975-78666994 | Msa1041140:intron | 50.0% | |
| TGGAAACAGGGTTCAAGTCC+TGG | - | chr7_1:78667071-78667090 | None:intergenic | 50.0% | |
| AGGACTTGAACCCTGTTTCC+AGG | + | chr7_1:78667070-78667089 | Msa1041140:intron | 50.0% | |
| CCCGTAAAACTAGCTGCCAT+GGG | - | chr7_1:78667208-78667227 | None:intergenic | 50.0% | |
| !!! | CCCATGGCAGCTAGTTTTAC+GGG | + | chr7_1:78667205-78667224 | Msa1041140:intron | 50.0% |
| TCCCGTAAAACTAGCTGCCA+TGG | - | chr7_1:78667209-78667228 | None:intergenic | 50.0% | |
| !!! | ATGGCAGCTAGTTTTACGGG+AGG | + | chr7_1:78667208-78667227 | Msa1041140:intron | 50.0% |
| !!! | TGGCAGCTAGTTTTACGGGA+GGG | + | chr7_1:78667209-78667228 | Msa1041140:intron | 50.0% |
| ATTCAGCACCCCAAGCATGT+GGG | - | chr7_1:78667237-78667256 | None:intergenic | 50.0% | |
| AATTCAGCACCCCAAGCATG+TGG | - | chr7_1:78667238-78667257 | None:intergenic | 50.0% | |
| TAGGGTCTGTTTGGGGGTTT+AGG | + | chr7_1:78667300-78667319 | Msa1041140:intron | 50.0% | |
| ! | GTTTGGGGGTTTAGGATTGG+AGG | + | chr7_1:78667308-78667327 | Msa1041140:intron | 50.0% |
| ! | TTGGGGGTTTAGGATTGGAG+GGG | + | chr7_1:78667310-78667329 | Msa1041140:intron | 50.0% |
| AGGACGTTAAGCGGAAGGAA+TGG | + | chr7_1:78667333-78667352 | Msa1041140:intron | 50.0% | |
| ACGTTAAGCGGAAGGAATGG+AGG | + | chr7_1:78667336-78667355 | Msa1041140:intron | 50.0% | |
| CGTTAAGCGGAAGGAATGGA+GGG | + | chr7_1:78667337-78667356 | Msa1041140:intron | 50.0% | |
| ! | CGGAAGGAATGGAGGGTTTT+AGG | + | chr7_1:78667344-78667363 | Msa1041140:intron | 50.0% |
| !!! | GGTTTTAGGAGGAAGGGCTT+TGG | + | chr7_1:78667358-78667377 | Msa1041140:intron | 50.0% |
| TCTGTTCCCCACCTCACTAT+CGG | + | chr7_1:78669085-78669104 | Msa1041140:CDS | 50.0% | |
| TGTTCCTCCGATAGTGAGGT+GGG | - | chr7_1:78669095-78669114 | None:intergenic | 50.0% | |
| ! | GGCACATGAGTGCCTTATTG+TGG | + | chr7_1:78669321-78669340 | Msa1041140:three_prime_UTR | 50.0% |
| TGGGTGGTTCCTTGAAGGTG+CGG | + | chr7_1:78665153-78665172 | Msa1041140:intron | 55.0% | |
| ! | CAGCGTCTTTTTCCAGGAGC+TGG | - | chr7_1:78665839-78665858 | None:intergenic | 55.0% |
| CCAGTCCCCTCAAGCACATA+AGG | - | chr7_1:78666128-78666147 | None:intergenic | 55.0% | |
| CCTTATGTGCTTGAGGGGAC+TGG | + | chr7_1:78666125-78666144 | Msa1041140:intron | 55.0% | |
| GCACTCAAGCACTTGGGAGT+TGG | - | chr7_1:78666791-78666810 | None:intergenic | 55.0% | |
| AAGACACTGGAAACCTGCCC+AGG | - | chr7_1:78666827-78666846 | None:intergenic | 55.0% | |
| AACGCTCGACTCAGCCTTTC+TGG | - | chr7_1:78666875-78666894 | None:intergenic | 55.0% | |
| ATGCGGGAGCTTCAATGCAC+CGG | - | chr7_1:78666970-78666989 | None:intergenic | 55.0% | |
| TTGGAGGGGAGGACGTTAAG+CGG | + | chr7_1:78667324-78667343 | Msa1041140:intron | 55.0% | |
| GGAATTTGGAGGGAAGGGGA+GGG | - | chr7_1:78667577-78667596 | None:intergenic | 55.0% | |
| GACGGCGAGCCCATAATTGA+TGG | + | chr7_1:78668379-78668398 | Msa1041140:CDS | 55.0% | |
| CACGACTGTCACTATCACGC+TGG | + | chr7_1:78668570-78668589 | Msa1041140:CDS | 55.0% | |
| GTTCCTCCGATAGTGAGGTG+GGG | - | chr7_1:78669094-78669113 | None:intergenic | 55.0% | |
| CTGTTCCTCCGATAGTGAGG+TGG | - | chr7_1:78669096-78669115 | None:intergenic | 55.0% | |
| AAATGGGGGCGAGAAGCCTA+AGG | - | chr7_1:78669233-78669252 | None:intergenic | 55.0% | |
| ! | AAGGCACTCATGTGCCGACA+AGG | - | chr7_1:78669317-78669336 | None:intergenic | 55.0% |
| ! | GGTTTGAAGCAGCATGCCGC+TGG | + | chr7_1:78664539-78664558 | Msa1041140:CDS | 60.0% |
| TTGAAGCAGCATGCCGCTGG+TGG | + | chr7_1:78664542-78664561 | Msa1041140:CDS | 60.0% | |
| ACCACCTCTTCCTCCACCAG+CGG | - | chr7_1:78664558-78664577 | None:intergenic | 60.0% | |
| CTTTGGCGGGGGATCAATGG+AGG | + | chr7_1:78665058-78665077 | Msa1041140:CDS | 60.0% | |
| TTGAGGGGACTGGGGTGTGA+AGG | + | chr7_1:78666135-78666154 | Msa1041140:intron | 60.0% | |
| TGCGGGAGCTTCAATGCACC+GGG | - | chr7_1:78666969-78666988 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr7_1:78666986-78667005 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr7_1:78666987-78667006 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr7_1:78666986-78667005 | Msa1041140:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr7_1:78666987-78667006 | Msa1041140:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr7_1:78667002-78667021 | None:intergenic | 60.0% |
| GGGAGGGTTCCCACATGCTT+GGG | + | chr7_1:78667225-78667244 | Msa1041140:intron | 60.0% | |
| GGAGGGTTCCCACATGCTTG+GGG | + | chr7_1:78667226-78667245 | Msa1041140:intron | 60.0% | |
| ! | GGGGTTTAGGATTGGAGGGG+AGG | + | chr7_1:78667313-78667332 | Msa1041140:intron | 60.0% |
| AGGGGAGGACGTTAAGCGGA+AGG | + | chr7_1:78667328-78667347 | Msa1041140:intron | 60.0% | |
| GGGAATTTGGAGGGAAGGGG+AGG | - | chr7_1:78667578-78667597 | None:intergenic | 60.0% | |
| GTTCCCCACCTCACTATCGG+AGG | + | chr7_1:78669088-78669107 | Msa1041140:CDS | 60.0% | |
| AAGCAGCATGCCGCTGGTGG+AGG | + | chr7_1:78664545-78664564 | Msa1041140:CDS | 65.0% | |
| CATGCCGCTGGTGGAGGAAG+AGG | + | chr7_1:78664551-78664570 | Msa1041140:CDS | 65.0% | |
| GCTGGTGGAGGAAGAGGTGG+TGG | + | chr7_1:78664557-78664576 | Msa1041140:CDS | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr7_1:78666980-78666999 | Msa1041140:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr7_1:78666981-78667000 | Msa1041140:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr7_1:78666985-78667004 | Msa1041140:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr7_1:78667000-78667019 | Msa1041140:intron | 65.0% | |
| CGGGAGGGTTCCCACATGCT+TGG | + | chr7_1:78667224-78667243 | Msa1041140:intron | 65.0% | |
| !! | AGGGGAGGGCTTTGGGGGAT+TGG | - | chr7_1:78667563-78667582 | None:intergenic | 65.0% |
| ! | AGGGAAGGGGAGGGCTTTGG+GGG | - | chr7_1:78667568-78667587 | None:intergenic | 65.0% |
| GAGGGAAGGGGAGGGCTTTG+GGG | - | chr7_1:78667569-78667588 | None:intergenic | 65.0% | |
| GGAGGGAAGGGGAGGGCTTT+GGG | - | chr7_1:78667570-78667589 | None:intergenic | 65.0% | |
| TGGAGGGAAGGGGAGGGCTT+TGG | - | chr7_1:78667571-78667590 | None:intergenic | 65.0% | |
| GCCGCTGGTGGAGGAAGAGG+TGG | + | chr7_1:78664554-78664573 | Msa1041140:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 78663519 | 78669545 | 78663519 | ID=Msa1041140;Name=Msa1041140 |
| chr7_1 | mRNA | 78663519 | 78669545 | 78663519 | ID=Msa1041140-mRNA-1;Parent=Msa1041140;Name=Msa1041140-mRNA-1;_AED=0.14;_eAED=0.14;_QI=256|0.88|0.9|1|1|1|10|400|325 |
| chr7_1 | exon | 78663519 | 78663845 | 78663519 | ID=Msa1041140-mRNA-1:exon:21041;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78663932 | 78664080 | 78663932 | ID=Msa1041140-mRNA-1:exon:21042;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78664537 | 78664606 | 78664537 | ID=Msa1041140-mRNA-1:exon:21043;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78665055 | 78665169 | 78665055 | ID=Msa1041140-mRNA-1:exon:21044;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78665809 | 78665925 | 78665809 | ID=Msa1041140-mRNA-1:exon:21045;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78666227 | 78666313 | 78666227 | ID=Msa1041140-mRNA-1:exon:21046;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78668361 | 78668420 | 78668361 | ID=Msa1041140-mRNA-1:exon:21047;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78668514 | 78668591 | 78668514 | ID=Msa1041140-mRNA-1:exon:21048;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78668817 | 78668888 | 78668817 | ID=Msa1041140-mRNA-1:exon:21049;Parent=Msa1041140-mRNA-1 |
| chr7_1 | exon | 78668987 | 78669545 | 78668987 | ID=Msa1041140-mRNA-1:exon:21050;Parent=Msa1041140-mRNA-1 |
| chr7_1 | five_prime_UTR | 78663519 | 78663774 | 78663519 | ID=Msa1041140-mRNA-1:five_prime_utr;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78663775 | 78663845 | 78663775 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78663932 | 78664080 | 78663932 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78664537 | 78664606 | 78664537 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78665055 | 78665169 | 78665055 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78665809 | 78665925 | 78665809 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78666227 | 78666313 | 78666227 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78668361 | 78668420 | 78668361 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78668514 | 78668591 | 78668514 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78668817 | 78668888 | 78668817 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | CDS | 78668987 | 78669145 | 78668987 | ID=Msa1041140-mRNA-1:cds;Parent=Msa1041140-mRNA-1 |
| chr7_1 | three_prime_UTR | 78669146 | 78669545 | 78669146 | ID=Msa1041140-mRNA-1:three_prime_utr;Parent=Msa1041140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
