Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003930 | sp|P35016|ENPL_CATRO | 80.929 | 624 | 97 | 2 | 1 | 602 | 1 | 624 | 0.0 | 959 |
| Msa0003930 | sp|P35016|ENPL_CATRO | 65.116 | 86 | 28 | 1 | 603 | 688 | 734 | 817 | 1.82e-17 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003930 | Msa0045790 | 0.800953 | 1.131566e-48 | -8.615850e-47 |
| Msa0003930 | Msa0057890 | 0.899439 | 1.980494e-77 | -8.615850e-47 |
| Msa0003930 | Msa0102600 | 0.870540 | 1.350541e-66 | -8.615850e-47 |
| Msa0003930 | Msa0147380 | 0.866528 | 2.670001e-65 | -8.615850e-47 |
| Msa0003930 | Msa0197660 | 0.823809 | 1.134382e-53 | -8.615850e-47 |
| Msa0003930 | Msa0200850 | 0.805351 | 1.392169e-49 | -8.615850e-47 |
| Msa0003930 | Msa0208310 | 0.808509 | 2.990904e-50 | -8.615850e-47 |
| Msa0003930 | Msa0215590 | 0.830135 | 3.483373e-55 | -8.615850e-47 |
| Msa0003930 | Msa0225670 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
| Msa0003930 | Msa0239800 | 0.836026 | 1.191105e-56 | -8.615850e-47 |
| Msa0003930 | Msa0270170 | -0.820248 | 7.583637e-53 | -8.615850e-47 |
| Msa0003930 | Msa0276920 | 0.811760 | 5.959595e-51 | -8.615850e-47 |
| Msa0003930 | Msa0277820 | 0.801360 | 9.343442e-49 | -8.615850e-47 |
| Msa0003930 | Msa0317510 | 0.831353 | 1.751451e-55 | -8.615850e-47 |
| Msa0003930 | Msa0333650 | 0.829306 | 5.542510e-55 | -8.615850e-47 |
| Msa0003930 | Msa0372420 | 0.890338 | 1.078535e-73 | -8.615850e-47 |
| Msa0003930 | Msa0382400 | 0.823441 | 1.383228e-53 | -8.615850e-47 |
| Msa0003930 | Msa0457470 | 0.805629 | 1.217083e-49 | -8.615850e-47 |
| Msa0003930 | Msa0460930 | 0.813075 | 3.074409e-51 | -8.615850e-47 |
| Msa0003930 | Msa0506860 | 0.802882 | 4.542356e-49 | -8.615850e-47 |
| Msa0003930 | Msa0517090 | 0.802257 | 6.113253e-49 | -8.615850e-47 |
| Msa0003930 | Msa0526890 | 0.802083 | 6.639241e-49 | -8.615850e-47 |
| Msa0003930 | Msa0541040 | 0.826355 | 2.839302e-54 | -8.615850e-47 |
| Msa0003930 | Msa0588870 | 0.816450 | 5.495672e-52 | -8.615850e-47 |
| Msa0003930 | Msa0597000 | 0.816929 | 4.292497e-52 | -8.615850e-47 |
| Msa0003930 | Msa0620620 | 0.804054 | 2.597187e-49 | -8.615850e-47 |
| Msa0003930 | Msa0696450 | 0.800941 | 1.138075e-48 | -8.615850e-47 |
| Msa0003930 | Msa0819540 | 0.811331 | 7.386243e-51 | -8.615850e-47 |
| Msa0003930 | Msa0826760 | 0.801638 | 8.192646e-49 | -8.615850e-47 |
| Msa0003930 | Msa0867160 | 0.846691 | 1.852619e-59 | -8.615850e-47 |
| Msa0003930 | Msa1041140 | 0.886573 | 3.040066e-72 | -8.615850e-47 |
| Msa0003930 | Msa1079190 | 0.811165 | 8.025829e-51 | -8.615850e-47 |
| Msa0003930 | Msa1082290 | 0.868009 | 8.976239e-66 | -8.615850e-47 |
| Msa0003930 | Msa1082300 | 0.842868 | 1.988390e-58 | -8.615850e-47 |
| Msa0003930 | Msa1124070 | 0.815997 | 6.938001e-52 | -8.615850e-47 |
| Msa0003930 | Msa1127190 | 0.874386 | 7.036066e-68 | -8.615850e-47 |
| Msa0003930 | Msa1127830 | 0.806493 | 8.008030e-50 | -8.615850e-47 |
| Msa0003930 | Msa1168990 | 0.813338 | 2.691860e-51 | -8.615850e-47 |
| Msa0003930 | Msa1169080 | 0.824073 | 9.835284e-54 | -8.615850e-47 |
| Msa0003930 | Msa1235380 | 0.841216 | 5.435474e-58 | -8.615850e-47 |
| Msa0003930 | Msa1362020 | 0.896767 | 2.687852e-76 | -8.615850e-47 |
| Msa0003930 | Msa1403530 | -0.803424 | 3.509413e-49 | -8.615850e-47 |
| Msa0003930 | Msa1418280 | 0.831043 | 2.087970e-55 | -8.615850e-47 |
| Msa0003930 | Msa1421460 | 0.896717 | 2.821411e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003930 | MtrunA17_Chr1g0156731 | 95.827 | 623 | 5 | 1 | 1 | 602 | 1 | 623 | 0.0 | 1199 |
| Msa0003930 | MtrunA17_Chr1g0156731 | 100.000 | 86 | 0 | 0 | 603 | 688 | 733 | 818 | 2.44e-33 | 137 |
| Msa0003930 | MtrunA17_Chr6g0469201 | 49.358 | 545 | 223 | 6 | 75 | 600 | 2 | 512 | 4.29e-167 | 496 |
| Msa0003930 | MtrunA17_Chr1g0202601 | 48.440 | 545 | 228 | 7 | 75 | 600 | 7 | 517 | 1.95e-166 | 493 |
| Msa0003930 | MtrunA17_Chr5g0446951 | 48.155 | 542 | 228 | 6 | 78 | 600 | 5 | 512 | 4.49e-159 | 475 |
| Msa0003930 | MtrunA17_Chr5g0446941 | 48.155 | 542 | 228 | 6 | 78 | 600 | 5 | 512 | 4.49e-159 | 475 |
| Msa0003930 | MtrunA17_Chr5g0447581 | 46.642 | 551 | 230 | 11 | 77 | 600 | 89 | 602 | 7.07e-147 | 447 |
| Msa0003930 | MtrunA17_Chr5g0420861 | 44.485 | 553 | 240 | 13 | 76 | 600 | 80 | 593 | 1.47e-138 | 425 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003930 | AT4G24190.1 | 79.808 | 624 | 100 | 4 | 1 | 602 | 1 | 620 | 0.0 | 918 |
| Msa0003930 | AT4G24190.1 | 80.435 | 46 | 9 | 0 | 603 | 648 | 730 | 775 | 6.94e-16 | 82.4 |
| Msa0003930 | AT4G24190.2 | 79.808 | 624 | 100 | 4 | 1 | 602 | 1 | 620 | 0.0 | 918 |
| Msa0003930 | AT4G24190.2 | 80.435 | 46 | 9 | 0 | 603 | 648 | 730 | 775 | 7.00e-16 | 82.4 |
| Msa0003930 | AT5G52640.1 | 49.541 | 545 | 223 | 6 | 75 | 600 | 2 | 513 | 1.29e-166 | 495 |
| Msa0003930 | AT5G56000.1 | 47.339 | 545 | 234 | 6 | 75 | 600 | 2 | 512 | 4.42e-160 | 478 |
| Msa0003930 | AT5G56010.1 | 47.339 | 545 | 234 | 6 | 75 | 600 | 2 | 512 | 6.96e-160 | 478 |
| Msa0003930 | AT5G56030.1 | 47.339 | 545 | 234 | 6 | 75 | 600 | 2 | 512 | 1.72e-159 | 476 |
| Msa0003930 | AT5G56030.2 | 44.948 | 574 | 234 | 7 | 75 | 600 | 2 | 541 | 4.66e-153 | 461 |
| Msa0003930 | AT3G07770.1 | 46.461 | 551 | 231 | 11 | 77 | 600 | 94 | 607 | 1.63e-147 | 449 |
| Msa0003930 | AT3G07770.3 | 46.461 | 551 | 231 | 11 | 77 | 600 | 94 | 607 | 1.63e-147 | 449 |
| Msa0003930 | AT3G07770.2 | 46.461 | 551 | 231 | 11 | 77 | 600 | 94 | 607 | 1.63e-147 | 449 |
| Msa0003930 | AT2G04030.1 | 44.964 | 556 | 231 | 14 | 75 | 600 | 74 | 584 | 4.59e-142 | 434 |
| Msa0003930 | AT2G04030.2 | 44.784 | 556 | 229 | 14 | 75 | 600 | 74 | 581 | 8.10e-141 | 431 |
Find 172 sgRNAs with CRISPR-Local
Find 381 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGATTTGGTAAAGAATT+TGG | 0.100722 | 1_1:+6421431 | Msa0003930:intron |
| AACACAATGTTTATCAAATT+TGG | 0.108599 | 1_1:-6425279 | None:intergenic |
| CCTCACTGATAAAGACATTT+TGG | 0.132107 | 1_1:+6420969 | Msa0003930:CDS |
| CTCAATCTAATTGGGCAATT+TGG | 0.152816 | 1_1:+6421603 | Msa0003930:CDS |
| CTCAATGATACCAAGTTTAA+TGG | 0.159199 | 1_1:-6423763 | None:intergenic |
| ATTACTACTGTCCTCAATTT+TGG | 0.191693 | 1_1:+6425389 | Msa0003930:three_prime_UTR |
| TTAACTTCCCTATCTATATC+TGG | 0.204471 | 1_1:+6422563 | Msa0003930:CDS |
| GCAACGTGGCGTTGATTAAT+TGG | 0.209213 | 1_1:-6419699 | None:intergenic |
| AGCTGAAGTTTCAAGGCTTA+TGG | 0.218402 | 1_1:+6420444 | Msa0003930:CDS |
| AGTGGTGATCTCAATCTAAT+TGG | 0.239122 | 1_1:+6421594 | Msa0003930:CDS |
| TTCATCTTCACTTTCCTCCT+TGG | 0.262279 | 1_1:-6422792 | None:intergenic |
| ATATACTCTCTCTTTGTTAC+TGG | 0.262725 | 1_1:-6419802 | None:intergenic |
| TCATCTTCACTTTCCTCCTT+GGG | 0.274450 | 1_1:-6422791 | None:intergenic |
| TGTCGGTTGCAGTTATTTCT+TGG | 0.277555 | 1_1:+6424978 | Msa0003930:three_prime_UTR |
| TCTTCCTCTGTAACCTCCTT+TGG | 0.284101 | 1_1:-6422926 | None:intergenic |
| GAGGATTTGGTAAAGAATTT+GGG | 0.292920 | 1_1:+6421432 | Msa0003930:CDS |
| CAATTCACTTTACAGTAATA+AGG | 0.298653 | 1_1:+6420477 | Msa0003930:CDS |
| ACCAAGTTCTGGAATGAGTT+TGG | 0.314376 | 1_1:+6423735 | Msa0003930:CDS |
| TTGCTTCCCCAGATATAGAT+AGG | 0.331375 | 1_1:-6422571 | None:intergenic |
| CGCAATACGAAAAGCAATAT+TGG | 0.335037 | 1_1:+6425353 | Msa0003930:three_prime_UTR |
| TGCATCAAGTATTCATCAAC+TGG | 0.336633 | 1_1:-6424202 | None:intergenic |
| ACGGATGGGTCCTTTAACTT+AGG | 0.348209 | 1_1:-6425051 | None:intergenic |
| TTCCTTGCTGGGACGAAGAA+TGG | 0.362934 | 1_1:-6419775 | None:intergenic |
| TGGTATGACAAAGGAGGATT+TGG | 0.366719 | 1_1:+6421419 | Msa0003930:intron |
| ATCTGACTTTCAGGTATGTA+TGG | 0.368320 | 1_1:+6421788 | Msa0003930:intron |
| CTCGTCTAACATACAACTTC+AGG | 0.373088 | 1_1:-6423212 | None:intergenic |
| CTTCTTCTTCTCGCAGATCA+AGG | 0.377003 | 1_1:+6419957 | Msa0003930:CDS |
| TGTAGGCATTGGACAAGATT+AGG | 0.378748 | 1_1:+6420938 | Msa0003930:intron |
| GAGGTCAATACACCAAGTTC+TGG | 0.382290 | 1_1:+6423724 | Msa0003930:CDS |
| TCTTTGTCAGTGGACTCGTC+AGG | 0.385604 | 1_1:-6423521 | None:intergenic |
| TAAATGATGTGAAGGCTATA+TGG | 0.388507 | 1_1:+6422894 | Msa0003930:CDS |
| TCCAAACTCATTCCAGAACT+TGG | 0.392555 | 1_1:-6423736 | None:intergenic |
| TACAAGTCCTGAGGTGCTTT+AGG | 0.402740 | 1_1:-6423159 | None:intergenic |
| GAAGGTTCTAAGAGAACGTT+TGG | 0.404533 | 1_1:-6419863 | None:intergenic |
| AGTTTCAAGCTGAAGTTTCA+AGG | 0.404580 | 1_1:+6420437 | Msa0003930:CDS |
| TTGGGTACCATAGCAAAATC+TGG | 0.405084 | 1_1:+6421450 | Msa0003930:CDS |
| GTGATGACAAACCTTTATCA+TGG | 0.420287 | 1_1:+6423082 | Msa0003930:CDS |
| GGTCCTCTTCGGCAAGCTTA+CGG | 0.422206 | 1_1:-6423499 | None:intergenic |
| ACTCGCTGGCCTCTTCTTTG+AGG | 0.426467 | 1_1:-6421894 | None:intergenic |
| GTAAAGTGGCTCCATGATAA+AGG | 0.427105 | 1_1:-6423093 | None:intergenic |
| GTGCTTTAGGTGGCACATAA+AGG | 0.430754 | 1_1:-6423146 | None:intergenic |
| TGGAACCAGCAAAGAACAAC+TGG | 0.432951 | 1_1:+6424013 | Msa0003930:CDS |
| TCCTTGCTGGGACGAAGAAT+GGG | 0.443401 | 1_1:-6419774 | None:intergenic |
| TCCTCCTCAACTGTTGCATC+AGG | 0.444473 | 1_1:-6424815 | None:intergenic |
| TCTTATCTTCATAATCCATC+AGG | 0.444687 | 1_1:-6424228 | None:intergenic |
| ATAGCAAAATCTGGAACTTC+AGG | 0.446829 | 1_1:+6421459 | Msa0003930:CDS |
| CAACGCCAAGCTTGAAATCC+AGG | 0.454983 | 1_1:+6421002 | Msa0003930:CDS |
| TAAATGTTGGTTACCATTCG+AGG | 0.460254 | 1_1:-6425241 | None:intergenic |
| TAACTTCCCTATCTATATCT+GGG | 0.461417 | 1_1:+6422564 | Msa0003930:CDS |
| ATTTCTCGTGATACATTCAA+TGG | 0.461649 | 1_1:-6423410 | None:intergenic |
| AAAACTGATCATTTATAAAG+TGG | 0.464737 | 1_1:-6425178 | None:intergenic |
| GCGAAGGGATCTCTTCGAAA+TGG | 0.469049 | 1_1:-6420395 | None:intergenic |
| ACAAACCTGGATTTCAAGCT+TGG | 0.470570 | 1_1:-6421007 | None:intergenic |
| GAGAGAAGAAGAAGAGTGGA+AGG | 0.480182 | 1_1:-6419930 | None:intergenic |
| CTAATTGGGCAATTTGGAGT+TGG | 0.481464 | 1_1:+6421609 | Msa0003930:CDS |
| AATTCTAGAAGCAAAATCCT+TGG | 0.482964 | 1_1:-6424759 | None:intergenic |
| TTTGGAAAATCCATTAAACT+TGG | 0.485636 | 1_1:+6423753 | Msa0003930:CDS |
| GAGAAATTCTGCCAAAATTG+AGG | 0.486767 | 1_1:-6425400 | None:intergenic |
| CCTCTTGACAACATCTGAAT+CGG | 0.488306 | 1_1:-6420268 | None:intergenic |
| TTGCAATTTCAGAAGATACA+TGG | 0.492822 | 1_1:+6421833 | Msa0003930:CDS |
| CATCTTCACTTTCCTCCTTG+GGG | 0.498254 | 1_1:-6422790 | None:intergenic |
| CAAGCTTACGGATCATATCA+AGG | 0.500174 | 1_1:-6423487 | None:intergenic |
| GTGGTGATCTCAATCTAATT+GGG | 0.500326 | 1_1:+6421595 | Msa0003930:CDS |
| CTTCAAGAAATTGTTTAGTG+TGG | 0.500579 | 1_1:+6425463 | Msa0003930:three_prime_UTR |
| CTTTGTCAGTGGACTCGTCA+GGG | 0.500986 | 1_1:-6423520 | None:intergenic |
| CTGATCATTTATAAAGTGGA+TGG | 0.504308 | 1_1:-6425174 | None:intergenic |
| TGTCTTTATCAGTGAGGGAT+AGG | 0.504588 | 1_1:-6420963 | None:intergenic |
| TTCTTCAGACGCTCAAGGAA+TGG | 0.506178 | 1_1:-6424044 | None:intergenic |
| AAGAGAGAGAAGAAGAAGAG+TGG | 0.506230 | 1_1:-6419934 | None:intergenic |
| ATTCTAGAAGCAAAATCCTT+GGG | 0.509254 | 1_1:-6424758 | None:intergenic |
| CGACGAGTCTTCTGAGGAAG+AGG | 0.516292 | 1_1:+6422627 | Msa0003930:CDS |
| TGGTGGATCTACTACTTCAT+CGG | 0.517594 | 1_1:-6420202 | None:intergenic |
| TCATCAGCTTCGTTTGAAGC+AGG | 0.518350 | 1_1:-6424884 | None:intergenic |
| GACTCGTCGTCTTCATCAGC+GGG | 0.518353 | 1_1:-6422613 | None:intergenic |
| CTGTCATTGCAATGAGGAAG+TGG | 0.518703 | 1_1:+6419901 | Msa0003930:exon |
| CACTTTCGAAAAGTGCAGTC+TGG | 0.519596 | 1_1:-6424718 | None:intergenic |
| GGACGAAGAATGGGAGCGGT+TGG | 0.520764 | 1_1:-6419765 | None:intergenic |
| TGATAAACGATTTCTGTTGG+TGG | 0.522059 | 1_1:-6423790 | None:intergenic |
| TACATATCTAGAATGAAAGC+TGG | 0.527032 | 1_1:+6423966 | Msa0003930:CDS |
| GGAAGATGAGACTGAAGTTG+AGG | 0.531983 | 1_1:+6424835 | Msa0003930:CDS |
| CATTAAACTTGGTATCATTG+AGG | 0.534100 | 1_1:+6423764 | Msa0003930:CDS |
| TGTGCCACCTAAAGCACCTC+AGG | 0.535240 | 1_1:+6423152 | Msa0003930:CDS |
| TAAGGCAAAATTCCAACGGA+TGG | 0.535919 | 1_1:-6425066 | None:intergenic |
| CATCACCTTCAGCAGTAAAG+TGG | 0.538199 | 1_1:-6423107 | None:intergenic |
| GTATGGGAATCTAAAGCTGA+TGG | 0.541849 | 1_1:+6421805 | Msa0003930:CDS |
| ATACTCTTCCACGTACTCGC+TGG | 0.546272 | 1_1:-6421908 | None:intergenic |
| GGATGAGAGTGTGAAGCAAA+CGG | 0.547097 | 1_1:+6424682 | Msa0003930:intron |
| AAACTCGGTGCTGTTCCTCA+TGG | 0.549531 | 1_1:+6420237 | Msa0003930:CDS |
| GGACTCGTCAGGGTCCTCTT+CGG | 0.550477 | 1_1:-6423510 | None:intergenic |
| AGAAGAGGCCAGCGAGTACG+TGG | 0.552899 | 1_1:+6421900 | Msa0003930:CDS |
| AGCGGTTGGATTTGCCAGCA+TGG | 0.553288 | 1_1:-6419751 | None:intergenic |
| CAAAATGTCTTTATCAGTGA+GGG | 0.554638 | 1_1:-6420968 | None:intergenic |
| GATCCGTAAGCTTGCCGAAG+AGG | 0.555543 | 1_1:+6423496 | Msa0003930:CDS |
| TGCTTCCCCAGATATAGATA+GGG | 0.556945 | 1_1:-6422570 | None:intergenic |
| TTTCTTGTTGAATGATCCCA+AGG | 0.558398 | 1_1:+6424742 | Msa0003930:CDS |
| TGTGTGTGAATGAAGGGAAT+CGG | 0.561471 | 1_1:+6420369 | Msa0003930:intron |
| TAGAATGAAAGCTGGACAGA+AGG | 0.562025 | 1_1:+6423974 | Msa0003930:CDS |
| CACCGTCAGATCATCCATGC+TGG | 0.562122 | 1_1:+6419737 | Msa0003930:five_prime_UTR |
| TCCACTGACAAAGAAAAGAA+AGG | 0.563357 | 1_1:+6423530 | Msa0003930:CDS |
| TGGAGCCACTTTACTGCTGA+AGG | 0.565774 | 1_1:+6423102 | Msa0003930:CDS |
| TAAAATACACCTCAAAGAAG+AGG | 0.565903 | 1_1:+6421885 | Msa0003930:CDS |
| TGTCAATTTACCCTCAGACT+TGG | 0.566708 | 1_1:-6423931 | None:intergenic |
| CAATTTCTTGAAGTCTTATG+CGG | 0.568276 | 1_1:-6425453 | None:intergenic |
| AAGTTAAAGGACCCATCCGT+TGG | 0.569335 | 1_1:+6425054 | Msa0003930:three_prime_UTR |
| TATTTACAGCACCAAGTCTG+AGG | 0.569728 | 1_1:+6423920 | Msa0003930:intron |
| TTGATCTAGTTGCTTCGACG+TGG | 0.572298 | 1_1:-6419675 | None:intergenic |
| TCTAACATACAACTTCAGGT+TGG | 0.576509 | 1_1:-6423208 | None:intergenic |
| ACTTCTCCGCATTACTGCGA+AGG | 0.578324 | 1_1:-6420411 | None:intergenic |
| ATCTCTGTTCCACGTCCTAG+TGG | 0.579957 | 1_1:-6421862 | None:intergenic |
| AATTTCTTGAAGTCTTATGC+GGG | 0.581132 | 1_1:-6425452 | None:intergenic |
| AAGTGTCACTATGTAATGGA+TGG | 0.581282 | 1_1:-6419636 | None:intergenic |
| TGCTTCAAACGAAGCTGATG+AGG | 0.581857 | 1_1:+6424886 | Msa0003930:CDS |
| TAAGACTAATGACTGTGCTA+AGG | 0.581922 | 1_1:-6425084 | None:intergenic |
| AGTAGTAGATCCACCAAAGG+TGG | 0.582933 | 1_1:+6420209 | Msa0003930:CDS |
| GGAACTCTTAAATGATGTGA+AGG | 0.585981 | 1_1:+6422886 | Msa0003930:CDS |
| TCCTGATGCAACAGTTGAGG+AGG | 0.586304 | 1_1:+6424814 | Msa0003930:CDS |
| AGTTAAGTGTCACTATGTAA+TGG | 0.586627 | 1_1:-6419640 | None:intergenic |
| CAGTCCTGATGCAACAGTTG+AGG | 0.589745 | 1_1:+6424811 | Msa0003930:CDS |
| TCTGACTTTCAGGTATGTAT+GGG | 0.590095 | 1_1:+6421789 | Msa0003930:intron |
| GATGATCTGACGGTGAAGGA+TGG | 0.591626 | 1_1:-6419729 | None:intergenic |
| AAGGCAAAATTCCAACGGAT+GGG | 0.594736 | 1_1:-6425065 | None:intergenic |
| CTTCTCCGCATTACTGCGAA+GGG | 0.594891 | 1_1:-6420410 | None:intergenic |
| ATTCTACCACTCTCTTGCCA+AGG | 0.602333 | 1_1:+6422958 | Msa0003930:CDS |
| AAATTTCAAGCGAATGCGGA+AGG | 0.606036 | 1_1:+6420174 | Msa0003930:CDS |
| AGACTCGTCGTCTTCATCAG+CGG | 0.606434 | 1_1:-6422614 | None:intergenic |
| GGGAAGCAAAGAGGTTGATG+TGG | 0.608554 | 1_1:+6422585 | Msa0003930:CDS |
| TGAAGACGACGAGTCTTCTG+AGG | 0.608975 | 1_1:+6422621 | Msa0003930:CDS |
| AAATGACGATGGTGATGTCA+AGG | 0.609943 | 1_1:+6424910 | Msa0003930:CDS |
| AAGCAAAGAGGTTGATGTGG+AGG | 0.610301 | 1_1:+6422588 | Msa0003930:CDS |
| ATACTTGATGCAATACCTGA+TGG | 0.612459 | 1_1:+6424213 | Msa0003930:CDS |
| GCCTAAAACAAAGACAGTGA+AGG | 0.613840 | 1_1:+6422847 | Msa0003930:CDS |
| TCCCATTCTTCGTCCCAGCA+AGG | 0.614137 | 1_1:+6419773 | Msa0003930:five_prime_UTR |
| ATTTACAGCACCAAGTCTGA+GGG | 0.614924 | 1_1:+6423921 | Msa0003930:intron |
| CAGTGTAAACAATTTCGAGA+AGG | 0.616346 | 1_1:-6419881 | None:intergenic |
| GAATCCAAAGGAGGTTACAG+AGG | 0.616769 | 1_1:+6422922 | Msa0003930:CDS |
| GAGATCCCTTCGCAGTAATG+CGG | 0.618086 | 1_1:+6420405 | Msa0003930:CDS |
| AACTTCCCTATCTATATCTG+GGG | 0.620396 | 1_1:+6422565 | Msa0003930:CDS |
| CCGATTCAGATGTTGTCAAG+AGG | 0.623522 | 1_1:+6420268 | Msa0003930:CDS |
| GAAATTCTGAGTCGTCCATG+TGG | 0.626749 | 1_1:+6419611 | Msa0003930:five_prime_UTR |
| AAGCTTACGGATCATATCAA+GGG | 0.627367 | 1_1:-6423486 | None:intergenic |
| TGGAATGAACCACTAGGACG+TGG | 0.627795 | 1_1:+6421853 | Msa0003930:CDS |
| GCTGGGACGAAGAATGGGAG+CGG | 0.628382 | 1_1:-6419769 | None:intergenic |
| TCTCTTCTCATCAACATCAG+AGG | 0.630151 | 1_1:-6423703 | None:intergenic |
| CATGGATGATCTGACGGTGA+AGG | 0.630554 | 1_1:-6419733 | None:intergenic |
| ATGTAATGGATGGACCCACA+TGG | 0.632498 | 1_1:-6419626 | None:intergenic |
| CTATATCTGGGGAAGCAAAG+AGG | 0.633804 | 1_1:+6422576 | Msa0003930:CDS |
| ATGTGAAGGCTATATGGCTG+AGG | 0.634531 | 1_1:+6422900 | Msa0003930:CDS |
| TGCCAGCATGGATGATCTGA+CGG | 0.635605 | 1_1:-6419739 | None:intergenic |
| GTTGAGAAAATGCAGACAAG+TGG | 0.638859 | 1_1:+6421576 | Msa0003930:CDS |
| TTTACACTGTCATTGCAATG+AGG | 0.639349 | 1_1:+6419895 | Msa0003930:exon |
| ATGATCTGACGGTGAAGGAT+GGG | 0.640650 | 1_1:-6419728 | None:intergenic |
| AAGTCCTGAGGTGCTTTAGG+TGG | 0.640658 | 1_1:-6423156 | None:intergenic |
| TCAATCAGCTGAAAGCCCCA+AGG | 0.640725 | 1_1:+6422775 | Msa0003930:intron |
| TCTGATGTTGATGAGAAGAG+AGG | 0.646244 | 1_1:+6423705 | Msa0003930:CDS |
| ATATTACCTTGGCAAGAGAG+TGG | 0.647445 | 1_1:-6422964 | None:intergenic |
| CCAAAATGTCTTTATCAGTG+AGG | 0.650976 | 1_1:-6420969 | None:intergenic |
| GTGCTAAGGCAAAATTCCAA+CGG | 0.652675 | 1_1:-6425070 | None:intergenic |
| AAATTCTGAGTCGTCCATGT+GGG | 0.655828 | 1_1:+6419612 | Msa0003930:five_prime_UTR |
| GCATCAAGTATTCATCAACT+GGG | 0.657313 | 1_1:-6424201 | None:intergenic |
| TGAAGGAAACGACTTACGAG+TGG | 0.661856 | 1_1:+6422864 | Msa0003930:CDS |
| GAAGGAAACGACTTACGAGT+GGG | 0.669364 | 1_1:+6422865 | Msa0003930:CDS |
| GCAAAGTGTCAGAATCAACA+AGG | 0.678755 | 1_1:-6423388 | None:intergenic |
| GATACATGGAATGAACCACT+AGG | 0.687380 | 1_1:+6421847 | Msa0003930:CDS |
| TAACTCTCGTACAAGTCCTG+AGG | 0.691370 | 1_1:-6423168 | None:intergenic |
| TGAAGTAGTAGATCCACCAA+AGG | 0.692806 | 1_1:+6420206 | Msa0003930:CDS |
| ATCAGCTGAAAGCCCCAAGG+AGG | 0.696234 | 1_1:+6422778 | Msa0003930:intron |
| ATGGCTGAGGAATCCAAAGG+AGG | 0.701467 | 1_1:+6422913 | Msa0003930:CDS |
| GAATCGGTTGAAAGTCCATG+AGG | 0.719230 | 1_1:-6420252 | None:intergenic |
| TATATGGCTGAGGAATCCAA+AGG | 0.735087 | 1_1:+6422910 | Msa0003930:CDS |
| GCTGATGAGGTAAATGACGA+TGG | 0.743848 | 1_1:+6424899 | Msa0003930:CDS |
| CATTTGAAATCAGTTCCCTG+AGG | 0.745225 | 1_1:-6420507 | None:intergenic |
| AGGATGGGTTAAGTGCAACG+TGG | 0.803327 | 1_1:-6419713 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTGTTTATCTAAAAA+AGG | + | chr1_1:6421319-6421338 | Msa0003930:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGAG+AGG | + | chr1_1:6425197-6425216 | Msa0003930:three_prime_UTR | 10.0% |
| !!! | TAAATGAAAATTTGTTTGTT+AGG | + | chr1_1:6420147-6420166 | Msa0003930:intron | 15.0% |
| !! | TATAATAAAAGTGATAGTTT+GGG | - | chr1_1:6421949-6421968 | None:intergenic | 15.0% |
| !! | TTATAATAAAAGTGATAGTT+TGG | - | chr1_1:6421950-6421969 | None:intergenic | 15.0% |
| !! | TATAGTATACAATAATAAGT+AGG | + | chr1_1:6422269-6422288 | Msa0003930:intron | 15.0% |
| !! | ATAGTATACAATAATAAGTA+GGG | + | chr1_1:6422270-6422289 | Msa0003930:intron | 15.0% |
| !! | ATACAAGTATGTATAATTTA+AGG | + | chr1_1:6422650-6422669 | Msa0003930:intron | 15.0% |
| !! | CAATAAAAAAGAAACTTATT+AGG | + | chr1_1:6423459-6423478 | Msa0003930:CDS | 15.0% |
| !!! | TTTTTTAAAATATATGCTAC+AGG | + | chr1_1:6424162-6424181 | Msa0003930:intron | 15.0% |
| !!! | ACTATTTTTGACAAAAATTA+AGG | - | chr1_1:6425142-6425161 | None:intergenic | 15.0% |
| !! | TGATTAGGTAAAATTGATTA+TGG | + | chr1_1:6420633-6420652 | Msa0003930:intron | 20.0% |
| !! | ATGTACAAATTATAAATGCA+AGG | - | chr1_1:6420880-6420899 | None:intergenic | 20.0% |
| !! | ACAAATAAGTTCTATATTGT+AGG | + | chr1_1:6420921-6420940 | Msa0003930:intron | 20.0% |
| !! | ATAATTAAAGTATACAAACC+TGG | - | chr1_1:6421023-6421042 | None:intergenic | 20.0% |
| !!! | TGTTTTAATGCTGTTTTAAT+GGG | + | chr1_1:6421117-6421136 | Msa0003930:intron | 20.0% |
| !!! | TGTTTTAATGGGTTTATTTT+TGG | + | chr1_1:6421128-6421147 | Msa0003930:intron | 20.0% |
| !!! | CTTAACTTGTAAAACTATTT+GGG | + | chr1_1:6421178-6421197 | Msa0003930:intron | 20.0% |
| !! | ATAATAAAAGTGATAGTTTG+GGG | - | chr1_1:6421948-6421967 | None:intergenic | 20.0% |
| !! | AAGGTTATAAATCAAATTTG+TGG | + | chr1_1:6422148-6422167 | Msa0003930:intron | 20.0% |
| !! | TAGTATACAATAATAAGTAG+GGG | + | chr1_1:6422271-6422290 | Msa0003930:intron | 20.0% |
| !! | GGTTAAATTAAATTATCACA+GGG | + | chr1_1:6422341-6422360 | Msa0003930:intron | 20.0% |
| !! | TTATCTATCCAATATACAAT+TGG | + | chr1_1:6422471-6422490 | Msa0003930:intron | 20.0% |
| !!! | TTGATAATACTTGTAATGTT+GGG | + | chr1_1:6423036-6423055 | Msa0003930:intron | 20.0% |
| !!! | TTCTTAACAAATGTTCTTTT+TGG | + | chr1_1:6423351-6423370 | Msa0003930:intron | 20.0% |
| !! | GTCAAAATAAATACAATTTC+TGG | - | chr1_1:6424126-6424145 | None:intergenic | 20.0% |
| !! | ATGTTGAAGACATAAAATAA+GGG | - | chr1_1:6424623-6424642 | None:intergenic | 20.0% |
| !! | TATGTTGAAGACATAAAATA+AGG | - | chr1_1:6424624-6424643 | None:intergenic | 20.0% |
| !! | AAAACTGATCATTTATAAAG+TGG | - | chr1_1:6425181-6425200 | None:intergenic | 20.0% |
| !! | AACACAATGTTTATCAAATT+TGG | - | chr1_1:6425282-6425301 | None:intergenic | 20.0% |
| ! | CAATTCACTTTACAGTAATA+AGG | + | chr1_1:6420477-6420496 | Msa0003930:CDS | 25.0% |
| !! | TAATAAGGATATTTTCCTCA+GGG | + | chr1_1:6420492-6420511 | Msa0003930:CDS | 25.0% |
| !!! | CAAGTTAGAATTGATTTTGA+AGG | + | chr1_1:6420744-6420763 | Msa0003930:intron | 25.0% |
| !! | AATTGATTTACATGTATGGT+TGG | - | chr1_1:6420795-6420814 | None:intergenic | 25.0% |
| !! | GTAGAATTGATTTACATGTA+TGG | - | chr1_1:6420799-6420818 | None:intergenic | 25.0% |
| !!! | TACGCTTTTAGAATCAATTT+TGG | + | chr1_1:6420816-6420835 | Msa0003930:intron | 25.0% |
| !!! | CTGTAGGTTTTTTAATGATA+AGG | + | chr1_1:6421079-6421098 | Msa0003930:intron | 25.0% |
| ! | ATTAAAACACCATCATTCTT+TGG | - | chr1_1:6421106-6421125 | None:intergenic | 25.0% |
| !!! | GTGTTTTAATGCTGTTTTAA+TGG | + | chr1_1:6421116-6421135 | Msa0003930:intron | 25.0% |
| ! | GCTTATATGAACTTATCTAT+TGG | + | chr1_1:6421155-6421174 | Msa0003930:intron | 25.0% |
| !!! | GCTTAACTTGTAAAACTATT+TGG | + | chr1_1:6421177-6421196 | Msa0003930:intron | 25.0% |
| !! | TTCAGGTATGTATATAGTTT+TGG | + | chr1_1:6421476-6421495 | Msa0003930:intron | 25.0% |
| !! | TCAGGTATGTATATAGTTTT+GGG | + | chr1_1:6421477-6421496 | Msa0003930:intron | 25.0% |
| ! | AGATCATTTCCAAAATCAAT+AGG | - | chr1_1:6421772-6421791 | None:intergenic | 25.0% |
| !!! | TGATTTTAAAATCAAGCAAC+TGG | - | chr1_1:6421973-6421992 | None:intergenic | 25.0% |
| ! | TTGTTCATGCTTAAGAATAT+AGG | + | chr1_1:6422117-6422136 | Msa0003930:intron | 25.0% |
| ! | AGTATACAATAATAAGTAGG+GGG | + | chr1_1:6422272-6422291 | Msa0003930:intron | 25.0% |
| ! | GGGTTAAATTAAATTATCAC+AGG | + | chr1_1:6422340-6422359 | Msa0003930:intron | 25.0% |
| ! | AAACTTCAAGAAACATAGTT+AGG | - | chr1_1:6422393-6422412 | None:intergenic | 25.0% |
| ! | GTTTCTTGAAGTTTAAAAGA+TGG | + | chr1_1:6422399-6422418 | Msa0003930:intron | 25.0% |
| !!! | TAATAACTTCTGTTTTTCAC+AGG | + | chr1_1:6422513-6422532 | Msa0003930:intron | 25.0% |
| ! | GTATAATTTAAGGATTCAGT+TGG | + | chr1_1:6422660-6422679 | Msa0003930:intron | 25.0% |
| ! | ATATCTTTATATGTTCCGTT+GGG | - | chr1_1:6423012-6423031 | None:intergenic | 25.0% |
| ! | ACATTACAAGTATTATCAAG+TGG | - | chr1_1:6423035-6423054 | None:intergenic | 25.0% |
| !! | CTTGATAATACTTGTAATGT+TGG | + | chr1_1:6423035-6423054 | Msa0003930:intron | 25.0% |
| ! | TGATAATACTTGTAATGTTG+GGG | + | chr1_1:6423037-6423056 | Msa0003930:intron | 25.0% |
| !! | CAAGAATCCTAATTCTTTTA+TGG | + | chr1_1:6423583-6423602 | Msa0003930:intron | 25.0% |
| ! | TGAGAAACCATAAAAGAATT+AGG | - | chr1_1:6423593-6423612 | None:intergenic | 25.0% |
| ! | TTCTGCATCAAAAGTTAAAT+TGG | - | chr1_1:6423676-6423695 | None:intergenic | 25.0% |
| ! | TTTGGAAAATCCATTAAACT+TGG | + | chr1_1:6423753-6423772 | Msa0003930:CDS | 25.0% |
| !! | TTTTGATAAACGATTTCTGT+TGG | - | chr1_1:6423796-6423815 | None:intergenic | 25.0% |
| ! | CCTATAAGAGTTAAATAACA+AGG | - | chr1_1:6423849-6423868 | None:intergenic | 25.0% |
| !!! | CCTTGTTATTTAACTCTTAT+AGG | + | chr1_1:6423846-6423865 | Msa0003930:intron | 25.0% |
| ! | ACATTGTTAACTGATGAAAT+GGG | - | chr1_1:6423883-6423902 | None:intergenic | 25.0% |
| ! | TACATTGTTAACTGATGAAA+TGG | - | chr1_1:6423884-6423903 | None:intergenic | 25.0% |
| !! | AAGGATATCTTTTACATAAC+TGG | + | chr1_1:6423993-6424012 | Msa0003930:CDS | 25.0% |
| !! | TTCAAATTTAGAATGTACCT+CGG | - | chr1_1:6424587-6424606 | None:intergenic | 25.0% |
| !! | TTTTATGTCTTCAACATAGT+TGG | + | chr1_1:6424626-6424645 | Msa0003930:intron | 25.0% |
| ! | TTTATGTCTTCAACATAGTT+GGG | + | chr1_1:6424627-6424646 | Msa0003930:intron | 25.0% |
| !!! | GTTTTAGTTTCCTAAGTTAA+AGG | + | chr1_1:6425041-6425060 | Msa0003930:three_prime_UTR | 25.0% |
| !! | TTGCAATGCATTTTAAATGT+TGG | - | chr1_1:6425257-6425276 | None:intergenic | 25.0% |
| !! | ATGATAGATGTTTTATAGCT+GGG | - | chr1_1:6425311-6425330 | None:intergenic | 25.0% |
| ! | AGTTAAGTGTCACTATGTAA+TGG | - | chr1_1:6419643-6419662 | None:intergenic | 30.0% |
| ATATACTCTCTCTTTGTTAC+TGG | - | chr1_1:6419805-6419824 | None:intergenic | 30.0% | |
| TTACGCACATTTCATTTCAA+TGG | + | chr1_1:6420110-6420129 | Msa0003930:intron | 30.0% | |
| TCAAAAATTTCAAGCGAATG+CGG | + | chr1_1:6420170-6420189 | Msa0003930:CDS | 30.0% | |
| ATTGAAATGTGTGTGAATGA+AGG | + | chr1_1:6420362-6420381 | Msa0003930:intron | 30.0% | |
| TTGAAATGTGTGTGAATGAA+GGG | + | chr1_1:6420363-6420382 | Msa0003930:intron | 30.0% | |
| ! | GTAATAAGGATATTTTCCTC+AGG | + | chr1_1:6420491-6420510 | Msa0003930:CDS | 30.0% |
| GAAGTTAGAATGTAAAGCTT+TGG | - | chr1_1:6420725-6420744 | None:intergenic | 30.0% | |
| ! | TATATGTTTGGTTCCACTTT+GGG | - | chr1_1:6420847-6420866 | None:intergenic | 30.0% |
| ! | GGATTTTCGAAGTATATGTT+TGG | - | chr1_1:6420859-6420878 | None:intergenic | 30.0% |
| AAGTTCTATATTGTAGGCAT+TGG | + | chr1_1:6420927-6420946 | Msa0003930:intron | 30.0% | |
| CAAAATGTCTTTATCAGTGA+GGG | - | chr1_1:6420971-6420990 | None:intergenic | 30.0% | |
| ! | CTCACTGATAAAGACATTTT+GGG | + | chr1_1:6420970-6420989 | Msa0003930:CDS | 30.0% |
| !! | GTTAATTAGTTTGTCTCTGT+AGG | + | chr1_1:6421063-6421082 | Msa0003930:intron | 30.0% |
| !!! | TAATGGGTTTATTTTTGGAC+TGG | + | chr1_1:6421133-6421152 | Msa0003930:intron | 30.0% |
| ACAAGCTGAAAACATATAAG+CGG | - | chr1_1:6421218-6421237 | None:intergenic | 30.0% | |
| AAGCTAACATGGAAAACTTA+TGG | - | chr1_1:6421243-6421262 | None:intergenic | 30.0% | |
| ! | GTTTTCACATAAGCTATAAG+TGG | - | chr1_1:6421273-6421292 | None:intergenic | 30.0% |
| GATGCAGATTAAGTTAGATA+AGG | + | chr1_1:6421362-6421381 | Msa0003930:intron | 30.0% | |
| ! | GAGGATTTGGTAAAGAATTT+GGG | + | chr1_1:6421432-6421451 | Msa0003930:CDS | 30.0% |
| !! | GTTGAAATTGCTTTTCTGAT+TGG | + | chr1_1:6421712-6421731 | Msa0003930:intron | 30.0% |
| TTGCAATTTCAGAAGATACA+TGG | + | chr1_1:6421833-6421852 | Msa0003930:CDS | 30.0% | |
| TAAAATACACCTCAAAGAAG+AGG | + | chr1_1:6421885-6421904 | Msa0003930:CDS | 30.0% | |
| !!! | AGTTCTTATTTTTCACTCCA+TGG | + | chr1_1:6422023-6422042 | Msa0003930:intron | 30.0% |
| !!! | GTTCTTATTTTTCACTCCAT+GGG | + | chr1_1:6422024-6422043 | Msa0003930:intron | 30.0% |
| GTTAAACTAAATGATACCCA+TGG | - | chr1_1:6422043-6422062 | None:intergenic | 30.0% | |
| AGTGAAAATTGTTGACATCT+AGG | - | chr1_1:6422065-6422084 | None:intergenic | 30.0% | |
| AAGAATATAGGTGTTCTTGA+AGG | + | chr1_1:6422129-6422148 | Msa0003930:intron | 30.0% | |
| TTATAGCTTCTTTAACTCTC+TGG | + | chr1_1:6422175-6422194 | Msa0003930:intron | 30.0% | |
| CTTAGAAGGTAAACTCTTAT+GGG | + | chr1_1:6422320-6422339 | Msa0003930:intron | 30.0% | |
| TTAAATTATCACAGGGTGAT+TGG | + | chr1_1:6422348-6422367 | Msa0003930:intron | 30.0% | |
| GCAATAGACCAATTGTATAT+TGG | - | chr1_1:6422482-6422501 | None:intergenic | 30.0% | |
| ! | AATTGGTCTATTGCTAAATC+TGG | + | chr1_1:6422488-6422507 | Msa0003930:intron | 30.0% |
| TTAACTTCCCTATCTATATC+TGG | + | chr1_1:6422563-6422582 | Msa0003930:CDS | 30.0% | |
| TAACTTCCCTATCTATATCT+GGG | + | chr1_1:6422564-6422583 | Msa0003930:CDS | 30.0% | |
| GCTGATTGAAGAGTAAAATA+TGG | - | chr1_1:6422764-6422783 | None:intergenic | 30.0% | |
| TAAATGATGTGAAGGCTATA+TGG | + | chr1_1:6422894-6422913 | Msa0003930:CDS | 30.0% | |
| ACTATTTATGTGATACCCAA+CGG | + | chr1_1:6422994-6423013 | Msa0003930:intron | 30.0% | |
| GATATCTTTATATGTTCCGT+TGG | - | chr1_1:6423013-6423032 | None:intergenic | 30.0% | |
| GTCAAAAAGCTCAAATACTT+GGG | - | chr1_1:6423270-6423289 | None:intergenic | 30.0% | |
| AGTCAAAAAGCTCAAATACT+TGG | - | chr1_1:6423271-6423290 | None:intergenic | 30.0% | |
| !! | ACAAATGTTCTTTTTGGCAT+TGG | + | chr1_1:6423357-6423376 | Msa0003930:intron | 30.0% |
| !! | CAAATGTTCTTTTTGGCATT+GGG | + | chr1_1:6423358-6423377 | Msa0003930:intron | 30.0% |
| ATTTCTCGTGATACATTCAA+TGG | - | chr1_1:6423413-6423432 | None:intergenic | 30.0% | |
| TGACAAAGAAAAGAAAGGTA+TGG | + | chr1_1:6423535-6423554 | Msa0003930:intron | 30.0% | |
| CTCAATGATACCAAGTTTAA+TGG | - | chr1_1:6423766-6423785 | None:intergenic | 30.0% | |
| CATTAAACTTGGTATCATTG+AGG | + | chr1_1:6423764-6423783 | Msa0003930:CDS | 30.0% | |
| CATTGTTAACTGATGAAATG+GGG | - | chr1_1:6423882-6423901 | None:intergenic | 30.0% | |
| ! | TTAACAATGTAGCTGATTCT+TGG | + | chr1_1:6423893-6423912 | Msa0003930:intron | 30.0% |
| ! | TACATATCTAGAATGAAAGC+TGG | + | chr1_1:6423966-6423985 | Msa0003930:CDS | 30.0% |
| TCTGAAGAAGAAAAACTTTG+AGG | + | chr1_1:6424058-6424077 | Msa0003930:CDS | 30.0% | |
| TCTTATCTTCATAATCCATC+AGG | - | chr1_1:6424231-6424250 | None:intergenic | 30.0% | |
| ! | TTCTAAAGACAAGGAACTAA+AGG | + | chr1_1:6424294-6424313 | Msa0003930:intron | 30.0% |
| ! | TCAAATTTAGAATGTACCTC+GGG | - | chr1_1:6424586-6424605 | None:intergenic | 30.0% |
| ! | ATTCTAGAAGCAAAATCCTT+GGG | - | chr1_1:6424761-6424780 | None:intergenic | 30.0% |
| ! | AATTCTAGAAGCAAAATCCT+TGG | - | chr1_1:6424762-6424781 | None:intergenic | 30.0% |
| !!! | TTTTTTACTCATGTTGCTGT+CGG | + | chr1_1:6424961-6424980 | Msa0003930:three_prime_UTR | 30.0% |
| CTGATCATTTATAAAGTGGA+TGG | - | chr1_1:6425177-6425196 | None:intergenic | 30.0% | |
| ! | CATGATAGATGTTTTATAGC+TGG | - | chr1_1:6425312-6425331 | None:intergenic | 30.0% |
| !! | CAATATTGCTTTTCGTATTG+CGG | - | chr1_1:6425355-6425374 | None:intergenic | 30.0% |
| ! | ATTACTACTGTCCTCAATTT+TGG | + | chr1_1:6425389-6425408 | Msa0003930:three_prime_UTR | 30.0% |
| ! | AATTTCTTGAAGTCTTATGC+GGG | - | chr1_1:6425455-6425474 | None:intergenic | 30.0% |
| ! | CAATTTCTTGAAGTCTTATG+CGG | - | chr1_1:6425456-6425475 | None:intergenic | 30.0% |
| CTTCAAGAAATTGTTTAGTG+TGG | + | chr1_1:6425463-6425482 | Msa0003930:three_prime_UTR | 30.0% | |
| ! | AAGTGTCACTATGTAATGGA+TGG | - | chr1_1:6419639-6419658 | None:intergenic | 35.0% |
| ! | TTACTGGAATTTTCCTTGCT+GGG | - | chr1_1:6419789-6419808 | None:intergenic | 35.0% |
| CAGTGTAAACAATTTCGAGA+AGG | - | chr1_1:6419884-6419903 | None:intergenic | 35.0% | |
| TTTACACTGTCATTGCAATG+AGG | + | chr1_1:6419895-6419914 | Msa0003930:exon | 35.0% | |
| AGTTTCAAGCTGAAGTTTCA+AGG | + | chr1_1:6420437-6420456 | Msa0003930:CDS | 35.0% | |
| !!! | GTGCGTTTTGAGTTTTGAAT+CGG | + | chr1_1:6420581-6420600 | Msa0003930:intron | 35.0% |
| TGCGGTGACAAAAATTGATT+AGG | + | chr1_1:6420618-6420637 | Msa0003930:intron | 35.0% | |
| ! | GTATATGTTTGGTTCCACTT+TGG | - | chr1_1:6420848-6420867 | None:intergenic | 35.0% |
| CCAAAATGTCTTTATCAGTG+AGG | - | chr1_1:6420972-6420991 | None:intergenic | 35.0% | |
| ! | CCTCACTGATAAAGACATTT+TGG | + | chr1_1:6420969-6420988 | Msa0003930:CDS | 35.0% |
| !! | GATAAAGACATTTTGGGTGA+AGG | + | chr1_1:6420976-6420995 | Msa0003930:CDS | 35.0% |
| TGATAAGGACCAAAGAATGA+TGG | + | chr1_1:6421094-6421113 | Msa0003930:intron | 35.0% | |
| ! | GTGGTTTTCATAAGCTAACA+TGG | - | chr1_1:6421254-6421273 | None:intergenic | 35.0% |
| ATCCTATCTATTAGAGACAG+AGG | + | chr1_1:6421393-6421412 | Msa0003930:intron | 35.0% | |
| TACCTCTGTCTCTAATAGAT+AGG | - | chr1_1:6421398-6421417 | None:intergenic | 35.0% | |
| ! | TCTATTAGAGACAGAGGTAT+TGG | + | chr1_1:6421399-6421418 | Msa0003930:intron | 35.0% |
| ! | GGAGGATTTGGTAAAGAATT+TGG | + | chr1_1:6421431-6421450 | Msa0003930:intron | 35.0% |
| ! | TGAAGTTCCAGATTTTGCTA+TGG | - | chr1_1:6421460-6421479 | None:intergenic | 35.0% |
| ! | ATAGCAAAATCTGGAACTTC+AGG | + | chr1_1:6421459-6421478 | Msa0003930:CDS | 35.0% |
| !! | CTGGTGTGAAGGATTTTAAT+TGG | + | chr1_1:6421530-6421549 | Msa0003930:intron | 35.0% |
| AGTGGTGATCTCAATCTAAT+TGG | + | chr1_1:6421594-6421613 | Msa0003930:CDS | 35.0% | |
| GTGGTGATCTCAATCTAATT+GGG | + | chr1_1:6421595-6421614 | Msa0003930:CDS | 35.0% | |
| CTCAATCTAATTGGGCAATT+TGG | + | chr1_1:6421603-6421622 | Msa0003930:CDS | 35.0% | |
| ! | CTTTTCTGATTGGTATGTTG+TGG | + | chr1_1:6421722-6421741 | Msa0003930:intron | 35.0% |
| ! | TGGTATGTTGTGGATGTTTT+CGG | + | chr1_1:6421732-6421751 | Msa0003930:intron | 35.0% |
| !!! | TTATGCCAGCCTATTGATTT+TGG | + | chr1_1:6421760-6421779 | Msa0003930:intron | 35.0% |
| CATTTCCAAAATCAATAGGC+TGG | - | chr1_1:6421768-6421787 | None:intergenic | 35.0% | |
| TTGGAAATGATCTGACTTTC+AGG | + | chr1_1:6421779-6421798 | Msa0003930:intron | 35.0% | |
| ! | ATCTGACTTTCAGGTATGTA+TGG | + | chr1_1:6421788-6421807 | Msa0003930:intron | 35.0% |
| ! | TCTGACTTTCAGGTATGTAT+GGG | + | chr1_1:6421789-6421808 | Msa0003930:intron | 35.0% |
| CTTAAGCATGAACAAAGTGT+AGG | - | chr1_1:6422112-6422131 | None:intergenic | 35.0% | |
| CCATAAGAGTTTACCTTCTA+AGG | - | chr1_1:6422322-6422341 | None:intergenic | 35.0% | |
| CCTTAGAAGGTAAACTCTTA+TGG | + | chr1_1:6422319-6422338 | Msa0003930:intron | 35.0% | |
| !! | CTTCTGTTTTTCACAGGAAT+TGG | + | chr1_1:6422519-6422538 | Msa0003930:intron | 35.0% |
| AACTTCCCTATCTATATCTG+GGG | + | chr1_1:6422565-6422584 | Msa0003930:CDS | 35.0% | |
| !!! | TCCTTCACTGTCTTTGTTTT+AGG | - | chr1_1:6422851-6422870 | None:intergenic | 35.0% |
| GGAACTCTTAAATGATGTGA+AGG | + | chr1_1:6422886-6422905 | Msa0003930:CDS | 35.0% | |
| TAGTGATGGCAATATTACCT+TGG | - | chr1_1:6422978-6422997 | None:intergenic | 35.0% | |
| GGGTATCACATAAATAGTGA+TGG | - | chr1_1:6422992-6423011 | None:intergenic | 35.0% | |
| GTGATGACAAACCTTTATCA+TGG | + | chr1_1:6423082-6423101 | Msa0003930:CDS | 35.0% | |
| TCTAACATACAACTTCAGGT+TGG | - | chr1_1:6423211-6423230 | None:intergenic | 35.0% | |
| AAGCTTACGGATCATATCAA+GGG | - | chr1_1:6423489-6423508 | None:intergenic | 35.0% | |
| TCCACTGACAAAGAAAAGAA+AGG | + | chr1_1:6423530-6423549 | Msa0003930:CDS | 35.0% | |
| ! | ACCTTTCTTTTCTTTGTCAG+TGG | - | chr1_1:6423534-6423553 | None:intergenic | 35.0% |
| TGATAAACGATTTCTGTTGG+TGG | - | chr1_1:6423793-6423812 | None:intergenic | 35.0% | |
| ! | ATTTTCCAGTTGTTCTTTGC+TGG | - | chr1_1:6424021-6424040 | None:intergenic | 35.0% |
| GCATCAAGTATTCATCAACT+GGG | - | chr1_1:6424204-6424223 | None:intergenic | 35.0% | |
| TGCATCAAGTATTCATCAAC+TGG | - | chr1_1:6424205-6424224 | None:intergenic | 35.0% | |
| ATACTTGATGCAATACCTGA+TGG | + | chr1_1:6424213-6424232 | Msa0003930:CDS | 35.0% | |
| ! | ATCGACATTGTCATTTGCAA+GGG | - | chr1_1:6424356-6424375 | None:intergenic | 35.0% |
| GTAGTGGTGACATCAAAATT+TGG | + | chr1_1:6424415-6424434 | Msa0003930:intron | 35.0% | |
| TGGTGACATCAAAATTTGGT+TGG | + | chr1_1:6424419-6424438 | Msa0003930:intron | 35.0% | |
| ! | CAAATTTAGAATGTACCTCG+GGG | - | chr1_1:6424585-6424604 | None:intergenic | 35.0% |
| ! | TTCAACATAGTTGGGCTTTT+TGG | + | chr1_1:6424635-6424654 | Msa0003930:intron | 35.0% |
| !!! | GGCTTTTTGGTTTACTCAAT+TGG | + | chr1_1:6424648-6424667 | Msa0003930:intron | 35.0% |
| !! | ACTCAATTGGCTTACTTTTC+AGG | + | chr1_1:6424661-6424680 | Msa0003930:intron | 35.0% |
| TTTCTTGTTGAATGATCCCA+AGG | + | chr1_1:6424742-6424761 | Msa0003930:CDS | 35.0% | |
| CAGCAACATGAGTAAAAAAG+AGG | - | chr1_1:6424960-6424979 | None:intergenic | 35.0% | |
| GGAAACTAAAACTCATGACA+GGG | - | chr1_1:6425033-6425052 | None:intergenic | 35.0% | |
| AGGAAACTAAAACTCATGAC+AGG | - | chr1_1:6425034-6425053 | None:intergenic | 35.0% | |
| TAAGACTAATGACTGTGCTA+AGG | - | chr1_1:6425087-6425106 | None:intergenic | 35.0% | |
| ! | TAAATGTTGGTTACCATTCG+AGG | - | chr1_1:6425244-6425263 | None:intergenic | 35.0% |
| CGCAATACGAAAAGCAATAT+TGG | + | chr1_1:6425353-6425372 | Msa0003930:three_prime_UTR | 35.0% | |
| GAGAAATTCTGCCAAAATTG+AGG | - | chr1_1:6425403-6425422 | None:intergenic | 35.0% | |
| AAATTCTGAGTCGTCCATGT+GGG | + | chr1_1:6419612-6419631 | Msa0003930:five_prime_UTR | 40.0% | |
| ! | GTTACTGGAATTTTCCTTGC+TGG | - | chr1_1:6419790-6419809 | None:intergenic | 40.0% |
| !! | GAAGGTTCTAAGAGAACGTT+TGG | - | chr1_1:6419866-6419885 | None:intergenic | 40.0% |
| AAGAGAGAGAAGAAGAAGAG+TGG | - | chr1_1:6419937-6419956 | None:intergenic | 40.0% | |
| CGCACATTTCATTTCAATGG+TGG | + | chr1_1:6420113-6420132 | Msa0003930:intron | 40.0% | |
| AAATTTCAAGCGAATGCGGA+AGG | + | chr1_1:6420174-6420193 | Msa0003930:CDS | 40.0% | |
| ! | TGGTGGATCTACTACTTCAT+CGG | - | chr1_1:6420205-6420224 | None:intergenic | 40.0% |
| TGAAGTAGTAGATCCACCAA+AGG | + | chr1_1:6420206-6420225 | Msa0003930:CDS | 40.0% | |
| ! | AGTTTTTCTTCCACCTTTGG+TGG | - | chr1_1:6420222-6420241 | None:intergenic | 40.0% |
| CCAAAGGTGGAAGAAAAACT+CGG | + | chr1_1:6420222-6420241 | Msa0003930:CDS | 40.0% | |
| CCTCTTGACAACATCTGAAT+CGG | - | chr1_1:6420271-6420290 | None:intergenic | 40.0% | |
| TGTGTGTGAATGAAGGGAAT+CGG | + | chr1_1:6420369-6420388 | Msa0003930:intron | 40.0% | |
| AGCTGAAGTTTCAAGGCTTA+TGG | + | chr1_1:6420444-6420463 | Msa0003930:CDS | 40.0% | |
| ! | CATTTGAAATCAGTTCCCTG+AGG | - | chr1_1:6420510-6420529 | None:intergenic | 40.0% |
| !! | TGTAGGCATTGGACAAGATT+AGG | + | chr1_1:6420938-6420957 | Msa0003930:intron | 40.0% |
| TGTCTTTATCAGTGAGGGAT+AGG | - | chr1_1:6420966-6420985 | None:intergenic | 40.0% | |
| ACAAACCTGGATTTCAAGCT+TGG | - | chr1_1:6421010-6421029 | None:intergenic | 40.0% | |
| !! | CAGAGGTATTGGTATGACAA+AGG | + | chr1_1:6421410-6421429 | Msa0003930:intron | 40.0% |
| !! | AGGTATTGGTATGACAAAGG+AGG | + | chr1_1:6421413-6421432 | Msa0003930:intron | 40.0% |
| TGGTATGACAAAGGAGGATT+TGG | + | chr1_1:6421419-6421438 | Msa0003930:intron | 40.0% | |
| TTGGGTACCATAGCAAAATC+TGG | + | chr1_1:6421450-6421469 | Msa0003930:CDS | 40.0% | |
| CTCTTAGCTGAAATGTTTGC+TGG | + | chr1_1:6421500-6421519 | Msa0003930:intron | 40.0% | |
| ! | AATGTTTGCTGGTTGTGATC+TGG | + | chr1_1:6421511-6421530 | Msa0003930:intron | 40.0% |
| GTTGAGAAAATGCAGACAAG+TGG | + | chr1_1:6421576-6421595 | Msa0003930:CDS | 40.0% | |
| ! | CTAATTGGGCAATTTGGAGT+TGG | + | chr1_1:6421609-6421628 | Msa0003930:CDS | 40.0% |
| ! | GTATGGGAATCTAAAGCTGA+TGG | + | chr1_1:6421805-6421824 | Msa0003930:CDS | 40.0% |
| GATACATGGAATGAACCACT+AGG | + | chr1_1:6421847-6421866 | Msa0003930:CDS | 40.0% | |
| TGGAGTATGCATACCTTAGA+AGG | + | chr1_1:6422306-6422325 | Msa0003930:intron | 40.0% | |
| TGCTTCCCCAGATATAGATA+GGG | - | chr1_1:6422573-6422592 | None:intergenic | 40.0% | |
| TTGCTTCCCCAGATATAGAT+AGG | - | chr1_1:6422574-6422593 | None:intergenic | 40.0% | |
| TCATCTTCACTTTCCTCCTT+GGG | - | chr1_1:6422794-6422813 | None:intergenic | 40.0% | |
| TTCATCTTCACTTTCCTCCT+TGG | - | chr1_1:6422795-6422814 | None:intergenic | 40.0% | |
| GCCTAAAACAAAGACAGTGA+AGG | + | chr1_1:6422847-6422866 | Msa0003930:CDS | 40.0% | |
| TATATGGCTGAGGAATCCAA+AGG | + | chr1_1:6422910-6422929 | Msa0003930:CDS | 40.0% | |
| ATATTACCTTGGCAAGAGAG+TGG | - | chr1_1:6422967-6422986 | None:intergenic | 40.0% | |
| GTAAAGTGGCTCCATGATAA+AGG | - | chr1_1:6423096-6423115 | None:intergenic | 40.0% | |
| CTCGTCTAACATACAACTTC+AGG | - | chr1_1:6423215-6423234 | None:intergenic | 40.0% | |
| !! | TTCTTTTTGGCATTGGGAAC+AGG | + | chr1_1:6423364-6423383 | Msa0003930:intron | 40.0% |
| !! | TCTTTTTGGCATTGGGAACA+GGG | + | chr1_1:6423365-6423384 | Msa0003930:intron | 40.0% |
| ! | GCAAAGTGTCAGAATCAACA+AGG | - | chr1_1:6423391-6423410 | None:intergenic | 40.0% |
| CAAGCTTACGGATCATATCA+AGG | - | chr1_1:6423490-6423509 | None:intergenic | 40.0% | |
| AGGTATGGTGTAATGACTGT+TGG | + | chr1_1:6423550-6423569 | Msa0003930:intron | 40.0% | |
| GGTATGGTGTAATGACTGTT+GGG | + | chr1_1:6423551-6423570 | Msa0003930:intron | 40.0% | |
| CGCTCGCTTACAATTGAAAA+GGG | - | chr1_1:6423617-6423636 | None:intergenic | 40.0% | |
| ! | CCTTTTCAATTGTAAGCGAG+CGG | + | chr1_1:6423615-6423634 | Msa0003930:intron | 40.0% |
| AAAGTCAGTGAAGGGAATTC+AGG | - | chr1_1:6423644-6423663 | None:intergenic | 40.0% | |
| AGAAGCGAAAAGTCAGTGAA+GGG | - | chr1_1:6423652-6423671 | None:intergenic | 40.0% | |
| TAGAAGCGAAAAGTCAGTGA+AGG | - | chr1_1:6423653-6423672 | None:intergenic | 40.0% | |
| TCTCTTCTCATCAACATCAG+AGG | - | chr1_1:6423706-6423725 | None:intergenic | 40.0% | |
| ! | TCTGATGTTGATGAGAAGAG+AGG | + | chr1_1:6423705-6423724 | Msa0003930:CDS | 40.0% |
| !! | ACCAAGTTCTGGAATGAGTT+TGG | + | chr1_1:6423735-6423754 | Msa0003930:CDS | 40.0% |
| TCCAAACTCATTCCAGAACT+TGG | - | chr1_1:6423739-6423758 | None:intergenic | 40.0% | |
| TATTTACAGCACCAAGTCTG+AGG | + | chr1_1:6423920-6423939 | Msa0003930:intron | 40.0% | |
| ATTTACAGCACCAAGTCTGA+GGG | + | chr1_1:6423921-6423940 | Msa0003930:intron | 40.0% | |
| TGTCAATTTACCCTCAGACT+TGG | - | chr1_1:6423934-6423953 | None:intergenic | 40.0% | |
| TAGAATGAAAGCTGGACAGA+AGG | + | chr1_1:6423974-6423993 | Msa0003930:CDS | 40.0% | |
| ! | TTTTCTTCTTCAGACGCTCA+AGG | - | chr1_1:6424052-6424071 | None:intergenic | 40.0% |
| GAAGTTCCAAAATGTGTCCA+AGG | + | chr1_1:6424249-6424268 | Msa0003930:intron | 40.0% | |
| TTCCAAAATGTGTCCAAGGA+GGG | + | chr1_1:6424253-6424272 | Msa0003930:intron | 40.0% | |
| GGAACTAAAGGAATCCTTCA+AGG | + | chr1_1:6424306-6424325 | Msa0003930:intron | 40.0% | |
| CCACTTAGTTAGATCCTTGA+AGG | - | chr1_1:6424323-6424342 | None:intergenic | 40.0% | |
| CCTTCAAGGATCTAACTAAG+TGG | + | chr1_1:6424320-6424339 | Msa0003930:intron | 40.0% | |
| TCAAGGATCTAACTAAGTGG+TGG | + | chr1_1:6424323-6424342 | Msa0003930:intron | 40.0% | |
| ! | CATCGACATTGTCATTTGCA+AGG | - | chr1_1:6424357-6424376 | None:intergenic | 40.0% |
| TGTGAAGATATCCAACCGAT+TGG | + | chr1_1:6424378-6424397 | Msa0003930:intron | 40.0% | |
| !! | CACAAGGAGTGTTATCCAAT+CGG | - | chr1_1:6424396-6424415 | None:intergenic | 40.0% |
| TTTGATGTCACCACTACACA+AGG | - | chr1_1:6424412-6424431 | None:intergenic | 40.0% | |
| ATTTGGTTGGAGTGCAAACA+TGG | + | chr1_1:6424432-6424451 | Msa0003930:intron | 40.0% | |
| AAAAAGCAAGCATACATGCG+CGG | + | chr1_1:6424490-6424509 | Msa0003930:intron | 40.0% | |
| ! | AAATGACGATGGTGATGTCA+AGG | + | chr1_1:6424910-6424929 | Msa0003930:CDS | 40.0% |
| !! | TGTCGGTTGCAGTTATTTCT+TGG | + | chr1_1:6424978-6424997 | Msa0003930:three_prime_UTR | 40.0% |
| AAGGCAAAATTCCAACGGAT+GGG | - | chr1_1:6425068-6425087 | None:intergenic | 40.0% | |
| TAAGGCAAAATTCCAACGGA+TGG | - | chr1_1:6425069-6425088 | None:intergenic | 40.0% | |
| GTGCTAAGGCAAAATTCCAA+CGG | - | chr1_1:6425073-6425092 | None:intergenic | 40.0% | |
| ! | TCAGCTTTTATTGCCTCGAA+TGG | + | chr1_1:6425228-6425247 | Msa0003930:three_prime_UTR | 40.0% |
| GAAATTCTGAGTCGTCCATG+TGG | + | chr1_1:6419611-6419630 | Msa0003930:five_prime_UTR | 45.0% | |
| !! | ATGTAATGGATGGACCCACA+TGG | - | chr1_1:6419629-6419648 | None:intergenic | 45.0% |
| TTGATCTAGTTGCTTCGACG+TGG | - | chr1_1:6419678-6419697 | None:intergenic | 45.0% | |
| !! | GCAACGTGGCGTTGATTAAT+TGG | - | chr1_1:6419702-6419721 | None:intergenic | 45.0% |
| ATGATCTGACGGTGAAGGAT+GGG | - | chr1_1:6419731-6419750 | None:intergenic | 45.0% | |
| CTGTCATTGCAATGAGGAAG+TGG | + | chr1_1:6419901-6419920 | Msa0003930:exon | 45.0% | |
| GAGAGAAGAAGAAGAGTGGA+AGG | - | chr1_1:6419933-6419952 | None:intergenic | 45.0% | |
| CTTCTTCTTCTCGCAGATCA+AGG | + | chr1_1:6419957-6419976 | Msa0003930:CDS | 45.0% | |
| AGTAGTAGATCCACCAAAGG+TGG | + | chr1_1:6420209-6420228 | Msa0003930:CDS | 45.0% | |
| ! | CCGAGTTTTTCTTCCACCTT+TGG | - | chr1_1:6420225-6420244 | None:intergenic | 45.0% |
| GAATCGGTTGAAAGTCCATG+AGG | - | chr1_1:6420255-6420274 | None:intergenic | 45.0% | |
| CCGATTCAGATGTTGTCAAG+AGG | + | chr1_1:6420268-6420287 | Msa0003930:CDS | 45.0% | |
| !! | TCGGTGTGTGTTTAGTTCTG+CGG | + | chr1_1:6420600-6420619 | Msa0003930:intron | 45.0% |
| !!! | AATTTTGGCTCCTCCCAAAG+TGG | + | chr1_1:6420831-6420850 | Msa0003930:intron | 45.0% |
| ! | ATGTTTGGTTCCACTTTGGG+AGG | - | chr1_1:6420844-6420863 | None:intergenic | 45.0% |
| ! | AGTAGGGGGTAGTGTTTCTA+TGG | + | chr1_1:6422286-6422305 | Msa0003930:intron | 45.0% |
| AAACATAGTTAGGCGAGTGC+TGG | - | chr1_1:6422383-6422402 | None:intergenic | 45.0% | |
| CTATATCTGGGGAAGCAAAG+AGG | + | chr1_1:6422576-6422595 | Msa0003930:CDS | 45.0% | |
| !! | AAGCAAAGAGGTTGATGTGG+AGG | + | chr1_1:6422588-6422607 | Msa0003930:CDS | 45.0% |
| CATCTTCACTTTCCTCCTTG+GGG | - | chr1_1:6422793-6422812 | None:intergenic | 45.0% | |
| TGAAGGAAACGACTTACGAG+TGG | + | chr1_1:6422864-6422883 | Msa0003930:CDS | 45.0% | |
| GAAGGAAACGACTTACGAGT+GGG | + | chr1_1:6422865-6422884 | Msa0003930:CDS | 45.0% | |
| ATGTGAAGGCTATATGGCTG+AGG | + | chr1_1:6422900-6422919 | Msa0003930:CDS | 45.0% | |
| GAATCCAAAGGAGGTTACAG+AGG | + | chr1_1:6422922-6422941 | Msa0003930:CDS | 45.0% | |
| TCTTCCTCTGTAACCTCCTT+TGG | - | chr1_1:6422929-6422948 | None:intergenic | 45.0% | |
| ATTCTACCACTCTCTTGCCA+AGG | + | chr1_1:6422958-6422977 | Msa0003930:CDS | 45.0% | |
| ! | GTTGGGGATTTGTGTTTTGC+AGG | + | chr1_1:6423053-6423072 | Msa0003930:intron | 45.0% |
| CATCACCTTCAGCAGTAAAG+TGG | - | chr1_1:6423110-6423129 | None:intergenic | 45.0% | |
| ! | GTGCTTTAGGTGGCACATAA+AGG | - | chr1_1:6423149-6423168 | None:intergenic | 45.0% |
| ! | TACAAGTCCTGAGGTGCTTT+AGG | - | chr1_1:6423162-6423181 | None:intergenic | 45.0% |
| TAACTCTCGTACAAGTCCTG+AGG | - | chr1_1:6423171-6423190 | None:intergenic | 45.0% | |
| CCGCTCGCTTACAATTGAAA+AGG | - | chr1_1:6423618-6423637 | None:intergenic | 45.0% | |
| GAGGTCAATACACCAAGTTC+TGG | + | chr1_1:6423724-6423743 | Msa0003930:CDS | 45.0% | |
| TGGAACCAGCAAAGAACAAC+TGG | + | chr1_1:6424013-6424032 | Msa0003930:CDS | 45.0% | |
| TTCTTCAGACGCTCAAGGAA+TGG | - | chr1_1:6424047-6424066 | None:intergenic | 45.0% | |
| GTTCCAAAATGTGTCCAAGG+AGG | + | chr1_1:6424252-6424271 | Msa0003930:intron | 45.0% | |
| ! | CGGGAAGGATTCTAAAGACA+AGG | + | chr1_1:6424285-6424304 | Msa0003930:intron | 45.0% |
| !! | AGGAGTGTTATCCAATCGGT+TGG | - | chr1_1:6424392-6424411 | None:intergenic | 45.0% |
| GGATAACACTCCTTGTGTAG+TGG | + | chr1_1:6424399-6424418 | Msa0003930:intron | 45.0% | |
| TCCTAGACACCCTATCATCA+AGG | + | chr1_1:6424534-6424553 | Msa0003930:intron | 45.0% | |
| ! | TCCTTGATGATAGGGTGTCT+AGG | - | chr1_1:6424538-6424557 | None:intergenic | 45.0% |
| ACCCTATCATCAAGGAACTC+CGG | + | chr1_1:6424542-6424561 | Msa0003930:intron | 45.0% | |
| GGTTCTTAACTACTCTCTCC+CGG | - | chr1_1:6424564-6424583 | None:intergenic | 45.0% | |
| ! | GGATGAGAGTGTGAAGCAAA+CGG | + | chr1_1:6424682-6424701 | Msa0003930:intron | 45.0% |
| ! | CACTTTCGAAAAGTGCAGTC+TGG | - | chr1_1:6424721-6424740 | None:intergenic | 45.0% |
| ! | CAGACTGCACTTTTCGAAAG+TGG | + | chr1_1:6424719-6424738 | Msa0003930:CDS | 45.0% |
| GGAAGATGAGACTGAAGTTG+AGG | + | chr1_1:6424835-6424854 | Msa0003930:CDS | 45.0% | |
| ! | TCATCAGCTTCGTTTGAAGC+AGG | - | chr1_1:6424887-6424906 | None:intergenic | 45.0% |
| TGCTTCAAACGAAGCTGATG+AGG | + | chr1_1:6424886-6424905 | Msa0003930:CDS | 45.0% | |
| GCTGATGAGGTAAATGACGA+TGG | + | chr1_1:6424899-6424918 | Msa0003930:CDS | 45.0% | |
| ! | ACGGATGGGTCCTTTAACTT+AGG | - | chr1_1:6425054-6425073 | None:intergenic | 45.0% |
| AAGTTAAAGGACCCATCCGT+TGG | + | chr1_1:6425054-6425073 | Msa0003930:three_prime_UTR | 45.0% | |
| !! | AGGATGGGTTAAGTGCAACG+TGG | - | chr1_1:6419716-6419735 | None:intergenic | 50.0% |
| GATGATCTGACGGTGAAGGA+TGG | - | chr1_1:6419732-6419751 | None:intergenic | 50.0% | |
| CATGGATGATCTGACGGTGA+AGG | - | chr1_1:6419736-6419755 | None:intergenic | 50.0% | |
| TGCCAGCATGGATGATCTGA+CGG | - | chr1_1:6419742-6419761 | None:intergenic | 50.0% | |
| TCCTTGCTGGGACGAAGAAT+GGG | - | chr1_1:6419777-6419796 | None:intergenic | 50.0% | |
| TTCCTTGCTGGGACGAAGAA+TGG | - | chr1_1:6419778-6419797 | None:intergenic | 50.0% | |
| !! | AAACTCGGTGCTGTTCCTCA+TGG | + | chr1_1:6420237-6420256 | Msa0003930:CDS | 50.0% |
| GCGAAGGGATCTCTTCGAAA+TGG | - | chr1_1:6420398-6420417 | None:intergenic | 50.0% | |
| GAGATCCCTTCGCAGTAATG+CGG | + | chr1_1:6420405-6420424 | Msa0003930:CDS | 50.0% | |
| CTTCTCCGCATTACTGCGAA+GGG | - | chr1_1:6420413-6420432 | None:intergenic | 50.0% | |
| ACTTCTCCGCATTACTGCGA+AGG | - | chr1_1:6420414-6420433 | None:intergenic | 50.0% | |
| CAACGCCAAGCTTGAAATCC+AGG | + | chr1_1:6421002-6421021 | Msa0003930:CDS | 50.0% | |
| CTGGTTGTGATCTGGTGTGA+AGG | + | chr1_1:6421519-6421538 | Msa0003930:intron | 50.0% | |
| TGGAATGAACCACTAGGACG+TGG | + | chr1_1:6421853-6421872 | Msa0003930:CDS | 50.0% | |
| ATCTCTGTTCCACGTCCTAG+TGG | - | chr1_1:6421865-6421884 | None:intergenic | 50.0% | |
| ATACTCTTCCACGTACTCGC+TGG | - | chr1_1:6421911-6421930 | None:intergenic | 50.0% | |
| !! | GGGAAGCAAAGAGGTTGATG+TGG | + | chr1_1:6422585-6422604 | Msa0003930:CDS | 50.0% |
| AGACTCGTCGTCTTCATCAG+CGG | - | chr1_1:6422617-6422636 | None:intergenic | 50.0% | |
| TGAAGACGACGAGTCTTCTG+AGG | + | chr1_1:6422621-6422640 | Msa0003930:CDS | 50.0% | |
| TCAATCAGCTGAAAGCCCCA+AGG | + | chr1_1:6422775-6422794 | Msa0003930:intron | 50.0% | |
| ATGGCTGAGGAATCCAAAGG+AGG | + | chr1_1:6422913-6422932 | Msa0003930:CDS | 50.0% | |
| ! | TGGAGCCACTTTACTGCTGA+AGG | + | chr1_1:6423102-6423121 | Msa0003930:CDS | 50.0% |
| ! | AAGTCCTGAGGTGCTTTAGG+TGG | - | chr1_1:6423159-6423178 | None:intergenic | 50.0% |
| ! | CTTTGTCAGTGGACTCGTCA+GGG | - | chr1_1:6423523-6423542 | None:intergenic | 50.0% |
| ! | TCTTTGTCAGTGGACTCGTC+AGG | - | chr1_1:6423524-6423543 | None:intergenic | 50.0% |
| ! | GACCCTCCTTGGACACATTT+TGG | - | chr1_1:6424258-6424277 | None:intergenic | 50.0% |
| ! | TCCAAGGAGGGTCTGAAACT+CGG | + | chr1_1:6424265-6424284 | Msa0003930:intron | 50.0% |
| ! | CCCGGAGTTCCTTGATGATA+GGG | - | chr1_1:6424546-6424565 | None:intergenic | 50.0% |
| CCCTATCATCAAGGAACTCC+GGG | + | chr1_1:6424543-6424562 | Msa0003930:intron | 50.0% | |
| ! | TCCCGGAGTTCCTTGATGAT+AGG | - | chr1_1:6424547-6424566 | None:intergenic | 50.0% |
| GAGAGTAGTTAAGAACCCCG+AGG | + | chr1_1:6424567-6424586 | Msa0003930:intron | 50.0% | |
| CAGTCCTGATGCAACAGTTG+AGG | + | chr1_1:6424811-6424830 | Msa0003930:CDS | 50.0% | |
| TCCTGATGCAACAGTTGAGG+AGG | + | chr1_1:6424814-6424833 | Msa0003930:CDS | 50.0% | |
| TCCTCCTCAACTGTTGCATC+AGG | - | chr1_1:6424818-6424837 | None:intergenic | 50.0% | |
| CACCGTCAGATCATCCATGC+TGG | + | chr1_1:6419737-6419756 | Msa0003930:five_prime_UTR | 55.0% | |
| AGCGGTTGGATTTGCCAGCA+TGG | - | chr1_1:6419754-6419773 | None:intergenic | 55.0% | |
| TCCCATTCTTCGTCCCAGCA+AGG | + | chr1_1:6419773-6419792 | Msa0003930:five_prime_UTR | 55.0% | |
| ! | ACTCGCTGGCCTCTTCTTTG+AGG | - | chr1_1:6421897-6421916 | None:intergenic | 55.0% |
| GACTCGTCGTCTTCATCAGC+GGG | - | chr1_1:6422616-6422635 | None:intergenic | 55.0% | |
| ! | CGACGAGTCTTCTGAGGAAG+AGG | + | chr1_1:6422627-6422646 | Msa0003930:CDS | 55.0% |
| ATCAGCTGAAAGCCCCAAGG+AGG | + | chr1_1:6422778-6422797 | Msa0003930:intron | 55.0% | |
| ! | TGTGCCACCTAAAGCACCTC+AGG | + | chr1_1:6423152-6423171 | Msa0003930:CDS | 55.0% |
| GATCCGTAAGCTTGCCGAAG+AGG | + | chr1_1:6423496-6423515 | Msa0003930:CDS | 55.0% | |
| GGTCCTCTTCGGCAAGCTTA+CGG | - | chr1_1:6423502-6423521 | None:intergenic | 55.0% | |
| ! | CCAAGGAGGGTCTGAAACTC+GGG | + | chr1_1:6424266-6424285 | Msa0003930:intron | 55.0% |
| AAGCATACATGCGCGGCAAG+AGG | + | chr1_1:6424497-6424516 | Msa0003930:intron | 55.0% | |
| AGCATACATGCGCGGCAAGA+GGG | + | chr1_1:6424498-6424517 | Msa0003930:intron | 55.0% | |
| GGACGAAGAATGGGAGCGGT+TGG | - | chr1_1:6419768-6419787 | None:intergenic | 60.0% | |
| GCTGGGACGAAGAATGGGAG+CGG | - | chr1_1:6419772-6419791 | None:intergenic | 60.0% | |
| AGAAGAGGCCAGCGAGTACG+TGG | + | chr1_1:6421900-6421919 | Msa0003930:CDS | 60.0% | |
| CTCTCTGGCGTGCGTGCATA+AGG | + | chr1_1:6422190-6422209 | Msa0003930:intron | 60.0% | |
| GGACTCGTCAGGGTCCTCTT+CGG | - | chr1_1:6423513-6423532 | None:intergenic | 60.0% | |
| CCCGAGTTTCAGACCCTCCT+TGG | - | chr1_1:6424269-6424288 | None:intergenic | 60.0% | |
| ! | GGAGGGTCTGAAACTCGGGA+AGG | + | chr1_1:6424270-6424289 | Msa0003930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6419610 | 6425545 | 6419610 | ID=Msa0003930;Name=Msa0003930 |
| chr1_1 | mRNA | 6419610 | 6425545 | 6419610 | ID=Msa0003930-mRNA-1;Parent=Msa0003930;Name=Msa0003930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=302|0.86|0.87|1|0.86|0.81|16|582|688 |
| chr1_1 | exon | 6419610 | 6419978 | 6419610 | ID=Msa0003930-mRNA-1:exon:2122;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6420169 | 6420289 | 6420169 | ID=Msa0003930-mRNA-1:exon:2123;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6420384 | 6420537 | 6420384 | ID=Msa0003930-mRNA-1:exon:2124;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6420943 | 6421023 | 6420943 | ID=Msa0003930-mRNA-1:exon:2125;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6421432 | 6421480 | 6421432 | ID=Msa0003930-mRNA-1:exon:2126;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6421571 | 6421697 | 6421571 | ID=Msa0003930-mRNA-1:exon:2127;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6421801 | 6421939 | 6421801 | ID=Msa0003930-mRNA-1:exon:2128;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6422535 | 6422655 | 6422535 | ID=Msa0003930-mRNA-1:exon:2129;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6422783 | 6422979 | 6422783 | ID=Msa0003930-mRNA-1:exon:2130;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6423075 | 6423290 | 6423075 | ID=Msa0003930-mRNA-1:exon:2131;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6423386 | 6423551 | 6423386 | ID=Msa0003930-mRNA-1:exon:2132;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6423694 | 6423832 | 6423694 | ID=Msa0003930-mRNA-1:exon:2133;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6423929 | 6424079 | 6423929 | ID=Msa0003930-mRNA-1:exon:2134;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6424184 | 6424261 | 6424184 | ID=Msa0003930-mRNA-1:exon:2135;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6424683 | 6425018 | 6424683 | ID=Msa0003930-mRNA-1:exon:2136;Parent=Msa0003930-mRNA-1 |
| chr1_1 | exon | 6425039 | 6425545 | 6425039 | ID=Msa0003930-mRNA-1:exon:2137;Parent=Msa0003930-mRNA-1 |
| chr1_1 | five_prime_UTR | 6419610 | 6419911 | 6419610 | ID=Msa0003930-mRNA-1:five_prime_utr;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6419912 | 6419978 | 6419912 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6420169 | 6420289 | 6420169 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6420384 | 6420537 | 6420384 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6420943 | 6421023 | 6420943 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6421432 | 6421480 | 6421432 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6421571 | 6421697 | 6421571 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6421801 | 6421939 | 6421801 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6422535 | 6422655 | 6422535 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6422783 | 6422979 | 6422783 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6423075 | 6423290 | 6423075 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6423386 | 6423551 | 6423386 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6423694 | 6423832 | 6423694 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6423929 | 6424079 | 6423929 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6424184 | 6424261 | 6424184 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | CDS | 6424683 | 6424943 | 6424683 | ID=Msa0003930-mRNA-1:cds;Parent=Msa0003930-mRNA-1 |
| chr1_1 | three_prime_UTR | 6424944 | 6425018 | 6424944 | ID=Msa0003930-mRNA-1:three_prime_utr;Parent=Msa0003930-mRNA-1 |
| chr1_1 | three_prime_UTR | 6425039 | 6425545 | 6425039 | ID=Msa0003930-mRNA-1:three_prime_utr;Parent=Msa0003930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
