AlfalfaGEDB | Msa1082300

M. sativa cultivar zhongmu-4 / Msa1082300

KEGG: K09517
GO: GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134
PFAM: PF01556.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082300	AFK35292.1	95.122	123	6	0	20	142	5	127	2.70e-78	238

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082300	sp\|B9FHF3\|DJB6_ORYSJ	75.410	122	30	0	20	141	225	346	1.30e-63	201

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082300	I3S4V0	95.122	123	6	0	20	142	5	127	1.29e-78	238

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003930	Msa1082300	0.842868	1.988390e-58	-8.615850e-47
Msa0045790	Msa1082300	0.807124	5.890841e-50	-8.615850e-47
Msa0046160	Msa1082300	0.804850	1.772462e-49	-8.615850e-47
Msa0057890	Msa1082300	0.869572	2.800600e-66	-8.615850e-47
Msa0102600	Msa1082300	0.849043	4.165735e-60	-8.615850e-47
Msa0147380	Msa1082300	0.845185	4.754417e-59	-8.615850e-47
Msa0215590	Msa1082300	0.808293	3.325608e-50	-8.615850e-47
Msa0231060	Msa1082300	0.800915	1.152062e-48	-8.615850e-47
Msa0408300	Msa1082300	0.808254	3.389289e-50	-8.615850e-47
Msa1041140	Msa1082300	0.821346	4.239780e-53	-8.615850e-47
Msa1082300	Msa1127190	0.836864	7.288738e-57	-8.615850e-47
Msa1082300	Msa1181550	0.800539	1.374194e-48	-8.615850e-47
Msa1082300	Msa1335540	0.812450	4.212960e-51	-8.615850e-47
Msa1082300	Msa1362020	0.823633	1.246856e-53	-8.615850e-47
Msa1082300	Msa1394380	0.820309	7.342525e-53	-8.615850e-47
Msa1082300	Msa1418280	0.814115	1.815287e-51	-8.615850e-47
Msa0239800	Msa1082300	0.802877	4.554976e-49	-8.615850e-47
Msa0243480	Msa1082300	0.821609	3.686028e-53	-8.615850e-47
Msa0321080	Msa1082300	0.800299	1.538086e-48	-8.615850e-47
Msa0333650	Msa1082300	0.811595	6.471002e-51	-8.615850e-47
Msa0541040	Msa1082300	0.800945	1.135596e-48	-8.615850e-47
Msa0596800	Msa1082300	0.803241	3.828758e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082300	MtrunA17_Chr7g0269841	95.935	123	5	0	20	142	222	344	4.75e-82	244
Msa1082300	MtrunA17_Chr1g0194941	67.143	70	23	0	15	84	33	102	4.19e-29	102
Msa1082300	MtrunA17_Chr4g0006391	44.340	106	58	1	37	141	233	338	8.80e-20	83.6
Msa1082300	MtrunA17_Chr3g0138471	37.398	123	76	1	21	142	204	326	2.57e-18	79.3
Msa1082300	MtrunA17_Chr4g0040501	36.885	122	76	1	21	141	222	343	1.83e-17	77.0
Msa1082300	MtrunA17_Chr5g0415751	35.849	106	67	1	38	142	56	161	6.20e-16	70.5
Msa1082300	MtrunA17_Chr2g0282741	34.146	123	80	1	21	142	217	339	1.05e-15	72.4
Msa1082300	MtrunA17_Chr2g0324921	34.959	123	79	1	21	142	213	335	2.15e-15	71.2
Msa1082300	MtrunA17_Chr2g0322181	32.800	125	81	2	20	141	234	358	7.27e-14	67.4
Msa1082300	MtrunA17_Chr3g0124801	38.318	107	65	1	36	141	185	291	1.04e-13	66.2
Msa1082300	MtrunA17_Chr8g0334811	34.921	126	77	3	21	141	237	362	3.20e-13	65.5
Msa1082300	MtrunA17_Chr4g0025401	30.400	125	84	2	20	141	232	356	2.29e-12	63.2
Msa1082300	MtrunA17_Chr3g0093111	30.894	123	84	1	21	142	189	311	7.77e-12	61.2
Msa1082300	MtrunA17_Chr2g0277721	33.645	107	69	2	37	141	153	259	2.77e-11	59.3
Msa1082300	MtrunA17_Chr5g0426951	32.353	102	67	2	34	134	316	416	4.50e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082300	AT3G62600.1	72.951	122	33	0	21	142	225	346	2.65e-62	194
Msa1082300	AT1G10350.1	39.344	122	74	0	21	142	226	347	2.67e-19	82.4
Msa1082300	AT2G20560.1	42.056	107	61	1	37	142	231	337	4.92e-19	81.6
Msa1082300	AT2G20550.1	40.187	107	63	1	37	142	178	284	1.26e-18	80.1
Msa1082300	AT2G20550.2	40.187	107	63	1	37	142	178	284	1.26e-18	80.1
Msa1082300	AT3G08910.1	41.905	105	60	1	38	141	216	320	1.35e-18	80.5
Msa1082300	AT1G59725.1	36.585	123	77	1	21	142	207	329	1.16e-17	77.8
Msa1082300	AT1G44160.1	38.525	122	74	1	21	141	232	353	2.66e-17	77.0
Msa1082300	AT5G01390.2	39.048	105	63	1	38	141	171	275	3.18e-17	76.3
Msa1082300	AT5G01390.1	39.048	105	63	1	38	141	229	333	4.62e-17	76.3
Msa1082300	AT4G28480.2	38.318	107	65	1	37	142	184	290	5.09e-17	75.9
Msa1082300	AT4G28480.1	38.318	107	65	1	37	142	242	348	7.44e-17	75.9
Msa1082300	AT5G25530.2	35.246	122	78	1	21	141	216	337	1.86e-16	74.7
Msa1082300	AT5G25530.1	35.246	122	78	1	21	141	224	345	1.91e-16	74.7
Msa1082300	AT5G22060.1	36.000	125	77	2	20	141	235	359	6.67e-16	73.6
Msa1082300	AT3G44110.1	32.000	125	82	2	20	141	234	358	9.78e-14	67.4
Msa1082300	AT3G47940.1	34.579	107	69	1	37	142	241	347	1.12e-11	61.2
Msa1082300	AT1G11040.1	37.143	105	65	1	38	141	328	432	1.86e-11	60.8

Find 46 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGGAGAATCTGGAGATTTA+AGG	0.175844	7_2:+82368351	Msa1082300:CDS
TCCAGATTCTCCATCAATTA+TGG	0.185165	7_2:-82368342	None:intergenic
TTGAACTTCCTTACTTGCTT+TGG	0.294218	7_2:-82368952	None:intergenic
CCCATAATTGATGGAGAATC+TGG	0.346187	7_2:+82368341	Msa1082300:CDS
CTTTAGGTTCAAGCTCTTGT+TGG	0.355874	7_2:+82368764	Msa1082300:intron
CCAGATTCTCCATCAATTAT+GGG	0.369755	7_2:-82368341	None:intergenic
TGGAGAATCTGGAGATTTAA+GGG	0.381629	7_2:+82368352	Msa1082300:CDS
ATCAAAATAGCACCACAATA+AGG	0.397206	7_2:-82369286	None:intergenic
CATTTCTTTCTTCAATTGCT+AGG	0.406440	7_2:-82369425	None:intergenic
TAAACACCTTGATGAACATT+TGG	0.407639	7_2:+82368802	Msa1082300:CDS
TTCTTGGTTAGAATACATTC+AGG	0.416876	7_2:+82369088	Msa1082300:exon
AGCAAGTAAGGAAGTTCAAA+GGG	0.426789	7_2:+82368956	Msa1082300:CDS
GTCCTCAATGTAACATGATT+AGG	0.428431	7_2:+82369134	Msa1082300:three_prime_UTR
ATGTTCATCAAGGTGTTTAA+CGG	0.438073	7_2:-82368798	None:intergenic
TCACAAATCCAAAGCAAGTA+AGG	0.443028	7_2:+82368944	Msa1082300:CDS
GACGGCGAGCCCATAATTGA+TGG	0.455291	7_2:+82368332	Msa1082300:CDS
TTCTTTGTGCTCATATGCAA+TGG	0.465194	7_2:-82368988	None:intergenic
GCATCTACTGTGATCCTTGT+CGG	0.469809	7_2:+82369253	Msa1082300:three_prime_UTR
ATTTCTTTCTTCAATTGCTA+GGG	0.482619	7_2:-82369424	None:intergenic
TTTAAAATGTAATTTACCAT+AGG	0.484246	7_2:-82369477	None:intergenic
AGTATAAATTGTCAATCCTA+TGG	0.486240	7_2:+82369461	Msa1082300:three_prime_UTR
AGCTTGCTTTGTGTCTGCAA+TGG	0.486629	7_2:+82369354	Msa1082300:three_prime_UTR
TTACAACAAATACACGCCTT+AGG	0.499816	7_2:+82369167	Msa1082300:three_prime_UTR
CTGTTCCTCCGATAGTGAGG+TGG	0.511479	7_2:-82369046	None:intergenic
TGTTCCTCCGATAGTGAGGT+GGG	0.527665	7_2:-82369045	None:intergenic
CATCTTGTGAGCAAGGTGAA+AGG	0.531664	7_2:+82369381	Msa1082300:three_prime_UTR
TCTGTTCCCCACCTCACTAT+CGG	0.540991	7_2:+82369038	Msa1082300:CDS
TTGCATATGAGCACAAAGAA+AGG	0.546751	7_2:+82368991	Msa1082300:CDS
AAGCAAGTAAGGAAGTTCAA+AGG	0.564203	7_2:+82368955	Msa1082300:CDS
TGTCTACCAAATGTTCATCA+AGG	0.574433	7_2:-82368808	None:intergenic
GTAAGGAAGTTCAAAGGGGA+GGG	0.585483	7_2:+82368961	Msa1082300:CDS
ACACCCTTAAAATTGAAGCT+AGG	0.595094	7_2:-82367965	None:intergenic
CACCTAATCATGTTACATTG+AGG	0.596632	7_2:-82369136	None:intergenic
TGATAGTGACAGTCGTGTGT+AGG	0.609921	7_2:-82368517	None:intergenic
AGTAAGGAAGTTCAAAGGGG+AGG	0.612915	7_2:+82368960	Msa1082300:CDS
CTAACTCTATCAAATGGGAA+AGG	0.615401	7_2:+82367911	None:intergenic
GGCACATGAGTGCCTTATTG+TGG	0.615842	7_2:+82369274	Msa1082300:three_prime_UTR
AAGGCACTCATGTGCCGACA+AGG	0.617284	7_2:-82369267	None:intergenic
TTTCTGTTCCTCCGATAGTG+AGG	0.622344	7_2:-82369049	None:intergenic
TTTGAAAAGTTCATGAGGTG+CGG	0.629074	7_2:-82368480	None:intergenic
CACGACTGTCACTATCACGC+TGG	0.651681	7_2:+82368523	Msa1082300:CDS
GTTCCTCCGATAGTGAGGTG+GGG	0.652557	7_2:-82369044	None:intergenic
TTTGGTAGACATAAGCTCGA+AGG	0.653250	7_2:+82368820	Msa1082300:CDS
CTCAATGTAACATGATTAGG+TGG	0.663853	7_2:+82369137	Msa1082300:three_prime_UTR
GTTCCCCACCTCACTATCGG+AGG	0.706891	7_2:+82369041	Msa1082300:CDS
GCAAGTAAGGAAGTTCAAAG+GGG	0.733693	7_2:+82368957	Msa1082300:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATAAAAATAAAGTATCTAT+TGG	-	chr7_2:82369221-82369240	None:intergenic	10.0%
!!!	AATAAAAATAAAGTATCTAT+TGG	-	chr7_2:82369221-82369240	None:intergenic	10.0%
!!!	TTTCCTTTAAAAAAAAAACA+AGG	-	chr7_2:82368045-82368064	None:intergenic	15.0%
!!	ACAAAAATAAAATCAATTCT+TGG	+	chr7_2:82369072-82369091	Msa1082300:CDS	15.0%
!!!	TTTCCTTTAAAAAAAAAACA+AGG	-	chr7_2:82368045-82368064	None:intergenic	15.0%
!!	ACAAAAATAAAATCAATTCT+TGG	+	chr7_2:82369072-82369091	Msa1082300:CDS	15.0%
!!	TAGTTTATGCAAATATTAGA+TGG	+	chr7_2:82368007-82368026	Msa1082300:intron	20.0%
!!!	GATCCTTGTTTTTTTTTTAA+AGG	+	chr7_2:82368039-82368058	Msa1082300:intron	20.0%
!!	TTGGTTAACTAACAAAAAAT+GGG	-	chr7_2:82369202-82369221	None:intergenic	20.0%
!!	ATTGGTTAACTAACAAAAAA+TGG	-	chr7_2:82369203-82369222	None:intergenic	20.0%
!!	TAGTTTATGCAAATATTAGA+TGG	+	chr7_2:82368007-82368026	Msa1082300:intron	20.0%
!!!	GATCCTTGTTTTTTTTTTAA+AGG	+	chr7_2:82368039-82368058	Msa1082300:intron	20.0%
!!	TTGGTTAACTAACAAAAAAT+GGG	-	chr7_2:82369202-82369221	None:intergenic	20.0%
!!	ATTGGTTAACTAACAAAAAA+TGG	-	chr7_2:82369203-82369222	None:intergenic	20.0%
!!	AACTAATTTTCAGCTTAAAC+AGG	-	chr7_2:82367992-82368011	None:intergenic	25.0%
!	TTTATGCAAATATTAGATGG+TGG	+	chr7_2:82368010-82368029	Msa1082300:intron	25.0%
!	TTATGCAAATATTAGATGGT+GGG	+	chr7_2:82368011-82368030	Msa1082300:intron	25.0%
!	CTTGACTAATTGAATGTTTA+TGG	+	chr7_2:82368270-82368289	Msa1082300:intron	25.0%
!!	CATTTGCTAACAAAAATGAA+AGG	-	chr7_2:82368388-82368407	None:intergenic	25.0%
!	AAACTGTTCATATTAGCATA+TGG	-	chr7_2:82368450-82368469	None:intergenic	25.0%
!	TTTAGTTGTATCTTACCTTT+CGG	+	chr7_2:82368567-82368586	Msa1082300:intron	25.0%
!	TTTAATACTTACTACAACAG+TGG	-	chr7_2:82368632-82368651	None:intergenic	25.0%
!	TGGTTAACTAACAAAAAATG+GGG	-	chr7_2:82369201-82369220	None:intergenic	25.0%
!!!	CTAGGGATATTTTGTTTAAT+TGG	-	chr7_2:82369410-82369429	None:intergenic	25.0%
!	ATTTCTTTCTTCAATTGCTA+GGG	-	chr7_2:82369427-82369446	None:intergenic	25.0%
!	AGTATAAATTGTCAATCCTA+TGG	+	chr7_2:82369461-82369480	Msa1082300:three_prime_UTR	25.0%
!!	AACTAATTTTCAGCTTAAAC+AGG	-	chr7_2:82367992-82368011	None:intergenic	25.0%
!	TTTATGCAAATATTAGATGG+TGG	+	chr7_2:82368010-82368029	Msa1082300:intron	25.0%
!	TTATGCAAATATTAGATGGT+GGG	+	chr7_2:82368011-82368030	Msa1082300:intron	25.0%
!	CTTGACTAATTGAATGTTTA+TGG	+	chr7_2:82368270-82368289	Msa1082300:intron	25.0%
!!	CATTTGCTAACAAAAATGAA+AGG	-	chr7_2:82368388-82368407	None:intergenic	25.0%
!	AAACTGTTCATATTAGCATA+TGG	-	chr7_2:82368450-82368469	None:intergenic	25.0%
!	TTTAGTTGTATCTTACCTTT+CGG	+	chr7_2:82368567-82368586	Msa1082300:intron	25.0%
!	TTTAATACTTACTACAACAG+TGG	-	chr7_2:82368632-82368651	None:intergenic	25.0%
!	TGGTTAACTAACAAAAAATG+GGG	-	chr7_2:82369201-82369220	None:intergenic	25.0%
!!!	CTAGGGATATTTTGTTTAAT+TGG	-	chr7_2:82369410-82369429	None:intergenic	25.0%
!	ATTTCTTTCTTCAATTGCTA+GGG	-	chr7_2:82369427-82369446	None:intergenic	25.0%
!	AGTATAAATTGTCAATCCTA+TGG	+	chr7_2:82369461-82369480	Msa1082300:three_prime_UTR	25.0%
	TTTCACTCCTCTATATTACT+TGG	-	chr7_2:82368098-82368117	None:intergenic	30.0%
	AAAGATGGAAAATGGATCAA+GGG	-	chr7_2:82368160-82368179	None:intergenic	30.0%
!	AATAACACTTTGAGAATGGT+TGG	-	chr7_2:82368187-82368206	None:intergenic	30.0%
!	GCAAAATAACACTTTGAGAA+TGG	-	chr7_2:82368191-82368210	None:intergenic	30.0%
!	ACCTCATGAACTTTTCAAAA+GGG	+	chr7_2:82368484-82368503	Msa1082300:CDS	30.0%
	GTATTAAACAGTAACTAGCA+TGG	+	chr7_2:82368644-82368663	Msa1082300:intron	30.0%
!	ATGTTCATCAAGGTGTTTAA+CGG	-	chr7_2:82368801-82368820	None:intergenic	30.0%
	TAAACACCTTGATGAACATT+TGG	+	chr7_2:82368802-82368821	Msa1082300:CDS	30.0%
!	AGGTGTGTTTCAATGTTTTT+GGG	-	chr7_2:82368897-82368916	None:intergenic	30.0%
!	TAGGTGTGTTTCAATGTTTT+TGG	-	chr7_2:82368898-82368917	None:intergenic	30.0%
	AGGGACAAAAGAAATATGTT+AGG	-	chr7_2:82368917-82368936	None:intergenic	30.0%
	TTCTTGGTTAGAATACATTC+AGG	+	chr7_2:82369088-82369107	Msa1082300:exon	30.0%
	GGTTAACTAACAAAAAATGG+GGG	-	chr7_2:82369200-82369219	None:intergenic	30.0%
	ATCAAAATAGCACCACAATA+AGG	-	chr7_2:82369289-82369308	None:intergenic	30.0%
	CATTTCTTTCTTCAATTGCT+AGG	-	chr7_2:82369428-82369447	None:intergenic	30.0%
	TTTCACTCCTCTATATTACT+TGG	-	chr7_2:82368098-82368117	None:intergenic	30.0%
	AAAGATGGAAAATGGATCAA+GGG	-	chr7_2:82368160-82368179	None:intergenic	30.0%
!	AATAACACTTTGAGAATGGT+TGG	-	chr7_2:82368187-82368206	None:intergenic	30.0%
!	GCAAAATAACACTTTGAGAA+TGG	-	chr7_2:82368191-82368210	None:intergenic	30.0%
!	ACCTCATGAACTTTTCAAAA+GGG	+	chr7_2:82368484-82368503	Msa1082300:CDS	30.0%
	GTATTAAACAGTAACTAGCA+TGG	+	chr7_2:82368644-82368663	Msa1082300:intron	30.0%
!	ATGTTCATCAAGGTGTTTAA+CGG	-	chr7_2:82368801-82368820	None:intergenic	30.0%
	TAAACACCTTGATGAACATT+TGG	+	chr7_2:82368802-82368821	Msa1082300:CDS	30.0%
!	AGGTGTGTTTCAATGTTTTT+GGG	-	chr7_2:82368897-82368916	None:intergenic	30.0%
!	TAGGTGTGTTTCAATGTTTT+TGG	-	chr7_2:82368898-82368917	None:intergenic	30.0%
	AGGGACAAAAGAAATATGTT+AGG	-	chr7_2:82368917-82368936	None:intergenic	30.0%
	TTCTTGGTTAGAATACATTC+AGG	+	chr7_2:82369088-82369107	Msa1082300:exon	30.0%
	GGTTAACTAACAAAAAATGG+GGG	-	chr7_2:82369200-82369219	None:intergenic	30.0%
	ATCAAAATAGCACCACAATA+AGG	-	chr7_2:82369289-82369308	None:intergenic	30.0%
	CATTTCTTTCTTCAATTGCT+AGG	-	chr7_2:82369428-82369447	None:intergenic	30.0%
!	ACGACCTAGCTTCAATTTTA+AGG	+	chr7_2:82367961-82367980	Msa1082300:CDS	35.0%
!	CGACCTAGCTTCAATTTTAA+GGG	+	chr7_2:82367962-82367981	Msa1082300:CDS	35.0%
	ACACCCTTAAAATTGAAGCT+AGG	-	chr7_2:82367968-82367987	None:intergenic	35.0%
!	CCTCTATATTACTTGGTAGT+CGG	-	chr7_2:82368091-82368110	None:intergenic	35.0%
!	TGTGGCATATTCAAAGCTTT+TGG	-	chr7_2:82368122-82368141	None:intergenic	35.0%
	GAAAGATGGAAAATGGATCA+AGG	-	chr7_2:82368161-82368180	None:intergenic	35.0%
	TTGGTGAGAAAGATGGAAAA+TGG	-	chr7_2:82368168-82368187	None:intergenic	35.0%
	CAATTAGTCAAGTTTCGACT+TGG	-	chr7_2:82368262-82368281	None:intergenic	35.0%
!!!	GCAATTTTTTGTCCTTTCAC+AGG	+	chr7_2:82368292-82368311	Msa1082300:intron	35.0%
!!!	ATTTTTTGTCCTTTCACAGG+AGG	+	chr7_2:82368295-82368314	Msa1082300:intron	35.0%
	CCAGATTCTCCATCAATTAT+GGG	-	chr7_2:82368344-82368363	None:intergenic	35.0%
	TCCAGATTCTCCATCAATTA+TGG	-	chr7_2:82368345-82368364	None:intergenic	35.0%
	ATGGAGAATCTGGAGATTTA+AGG	+	chr7_2:82368351-82368370	Msa1082300:CDS	35.0%
	TGGAGAATCTGGAGATTTAA+GGG	+	chr7_2:82368352-82368371	Msa1082300:CDS	35.0%
	TTTGAAAAGTTCATGAGGTG+CGG	-	chr7_2:82368483-82368502	None:intergenic	35.0%
!	CACCTCATGAACTTTTCAAA+AGG	+	chr7_2:82368483-82368502	Msa1082300:CDS	35.0%
!!	TCCCTTTTGAAAAGTTCATG+AGG	-	chr7_2:82368488-82368507	None:intergenic	35.0%
!	CATGAACTTTTCAAAAGGGA+AGG	+	chr7_2:82368488-82368507	Msa1082300:CDS	35.0%
!	GTATCTTACCTTTCGGATTT+TGG	+	chr7_2:82368574-82368593	Msa1082300:intron	35.0%
	AGTGTTATCCAAAATCCGAA+AGG	-	chr7_2:82368585-82368604	None:intergenic	35.0%
!	ACACTTGTTGATTGTGCAAA+CGG	+	chr7_2:82368682-82368701	Msa1082300:intron	35.0%
	TGTCTACCAAATGTTCATCA+AGG	-	chr7_2:82368811-82368830	None:intergenic	35.0%
	TCTTCTTTGCTGCTCTTAAT+TGG	+	chr7_2:82368856-82368875	Msa1082300:intron	35.0%
!!!	TGTTTCAATGTTTTTGGGGT+GGG	-	chr7_2:82368892-82368911	None:intergenic	35.0%
!!	GGTGTGTTTCAATGTTTTTG+GGG	-	chr7_2:82368896-82368915	None:intergenic	35.0%
!	ACATATTTCTTTTGTCCCTC+AGG	+	chr7_2:82368918-82368937	Msa1082300:intron	35.0%
!	CATATTTCTTTTGTCCCTCA+GGG	+	chr7_2:82368919-82368938	Msa1082300:intron	35.0%
	TCACAAATCCAAAGCAAGTA+AGG	+	chr7_2:82368944-82368963	Msa1082300:CDS	35.0%
	TTGAACTTCCTTACTTGCTT+TGG	-	chr7_2:82368955-82368974	None:intergenic	35.0%
	AAGCAAGTAAGGAAGTTCAA+AGG	+	chr7_2:82368955-82368974	Msa1082300:CDS	35.0%
	AGCAAGTAAGGAAGTTCAAA+GGG	+	chr7_2:82368956-82368975	Msa1082300:CDS	35.0%
	TTCTTTGTGCTCATATGCAA+TGG	-	chr7_2:82368991-82369010	None:intergenic	35.0%
	TTGCATATGAGCACAAAGAA+AGG	+	chr7_2:82368991-82369010	Msa1082300:CDS	35.0%
!!!	AGATCTTTACGTCACTTTTG+AGG	+	chr7_2:82369014-82369033	Msa1082300:CDS	35.0%
	GTCCTCAATGTAACATGATT+AGG	+	chr7_2:82369134-82369153	Msa1082300:three_prime_UTR	35.0%
	CACCTAATCATGTTACATTG+AGG	-	chr7_2:82369139-82369158	None:intergenic	35.0%
	CTCAATGTAACATGATTAGG+TGG	+	chr7_2:82369137-82369156	Msa1082300:three_prime_UTR	35.0%
	TTACAACAAATACACGCCTT+AGG	+	chr7_2:82369167-82369186	Msa1082300:three_prime_UTR	35.0%
!!!	TGTGGTGCTATTTTGATACA+AGG	+	chr7_2:82369292-82369311	Msa1082300:three_prime_UTR	35.0%
!	ACGACCTAGCTTCAATTTTA+AGG	+	chr7_2:82367961-82367980	Msa1082300:CDS	35.0%
!	CGACCTAGCTTCAATTTTAA+GGG	+	chr7_2:82367962-82367981	Msa1082300:CDS	35.0%
	ACACCCTTAAAATTGAAGCT+AGG	-	chr7_2:82367968-82367987	None:intergenic	35.0%
!	CCTCTATATTACTTGGTAGT+CGG	-	chr7_2:82368091-82368110	None:intergenic	35.0%
!	TGTGGCATATTCAAAGCTTT+TGG	-	chr7_2:82368122-82368141	None:intergenic	35.0%
	GAAAGATGGAAAATGGATCA+AGG	-	chr7_2:82368161-82368180	None:intergenic	35.0%
	TTGGTGAGAAAGATGGAAAA+TGG	-	chr7_2:82368168-82368187	None:intergenic	35.0%
	CAATTAGTCAAGTTTCGACT+TGG	-	chr7_2:82368262-82368281	None:intergenic	35.0%
!!!	GCAATTTTTTGTCCTTTCAC+AGG	+	chr7_2:82368292-82368311	Msa1082300:intron	35.0%
!!!	ATTTTTTGTCCTTTCACAGG+AGG	+	chr7_2:82368295-82368314	Msa1082300:intron	35.0%
	CCAGATTCTCCATCAATTAT+GGG	-	chr7_2:82368344-82368363	None:intergenic	35.0%
	TCCAGATTCTCCATCAATTA+TGG	-	chr7_2:82368345-82368364	None:intergenic	35.0%
	ATGGAGAATCTGGAGATTTA+AGG	+	chr7_2:82368351-82368370	Msa1082300:CDS	35.0%
	TGGAGAATCTGGAGATTTAA+GGG	+	chr7_2:82368352-82368371	Msa1082300:CDS	35.0%
	TTTGAAAAGTTCATGAGGTG+CGG	-	chr7_2:82368483-82368502	None:intergenic	35.0%
!	CACCTCATGAACTTTTCAAA+AGG	+	chr7_2:82368483-82368502	Msa1082300:CDS	35.0%
!!	TCCCTTTTGAAAAGTTCATG+AGG	-	chr7_2:82368488-82368507	None:intergenic	35.0%
!	CATGAACTTTTCAAAAGGGA+AGG	+	chr7_2:82368488-82368507	Msa1082300:CDS	35.0%
!	GTATCTTACCTTTCGGATTT+TGG	+	chr7_2:82368574-82368593	Msa1082300:intron	35.0%
	AGTGTTATCCAAAATCCGAA+AGG	-	chr7_2:82368585-82368604	None:intergenic	35.0%
!	ACACTTGTTGATTGTGCAAA+CGG	+	chr7_2:82368682-82368701	Msa1082300:intron	35.0%
	TGTCTACCAAATGTTCATCA+AGG	-	chr7_2:82368811-82368830	None:intergenic	35.0%
	TCTTCTTTGCTGCTCTTAAT+TGG	+	chr7_2:82368856-82368875	Msa1082300:intron	35.0%
!!!	TGTTTCAATGTTTTTGGGGT+GGG	-	chr7_2:82368892-82368911	None:intergenic	35.0%
!!	GGTGTGTTTCAATGTTTTTG+GGG	-	chr7_2:82368896-82368915	None:intergenic	35.0%
!	ACATATTTCTTTTGTCCCTC+AGG	+	chr7_2:82368918-82368937	Msa1082300:intron	35.0%
!	CATATTTCTTTTGTCCCTCA+GGG	+	chr7_2:82368919-82368938	Msa1082300:intron	35.0%
	TCACAAATCCAAAGCAAGTA+AGG	+	chr7_2:82368944-82368963	Msa1082300:CDS	35.0%
	TTGAACTTCCTTACTTGCTT+TGG	-	chr7_2:82368955-82368974	None:intergenic	35.0%
	AAGCAAGTAAGGAAGTTCAA+AGG	+	chr7_2:82368955-82368974	Msa1082300:CDS	35.0%
	AGCAAGTAAGGAAGTTCAAA+GGG	+	chr7_2:82368956-82368975	Msa1082300:CDS	35.0%
	TTCTTTGTGCTCATATGCAA+TGG	-	chr7_2:82368991-82369010	None:intergenic	35.0%
	TTGCATATGAGCACAAAGAA+AGG	+	chr7_2:82368991-82369010	Msa1082300:CDS	35.0%
!!!	AGATCTTTACGTCACTTTTG+AGG	+	chr7_2:82369014-82369033	Msa1082300:CDS	35.0%
	GTCCTCAATGTAACATGATT+AGG	+	chr7_2:82369134-82369153	Msa1082300:three_prime_UTR	35.0%
	CACCTAATCATGTTACATTG+AGG	-	chr7_2:82369139-82369158	None:intergenic	35.0%
	CTCAATGTAACATGATTAGG+TGG	+	chr7_2:82369137-82369156	Msa1082300:three_prime_UTR	35.0%
	TTACAACAAATACACGCCTT+AGG	+	chr7_2:82369167-82369186	Msa1082300:three_prime_UTR	35.0%
!!!	TGTGGTGCTATTTTGATACA+AGG	+	chr7_2:82369292-82369311	Msa1082300:three_prime_UTR	35.0%
	CCGACTACCAAGTAATATAG+AGG	+	chr7_2:82368088-82368107	Msa1082300:intron	40.0%
	GGGTAAAAAAGAAAGCAGTG+TGG	-	chr7_2:82368140-82368159	None:intergenic	40.0%
!!	AGAATGGTTGGTGAGAAAGA+TGG	-	chr7_2:82368175-82368194	None:intergenic	40.0%
	AAAATAGCACCTCCTGTGAA+AGG	-	chr7_2:82368307-82368326	None:intergenic	40.0%
!!!	ACAGGAGGTGCTATTTTATG+AGG	+	chr7_2:82368310-82368329	Msa1082300:intron	40.0%
!!!	GAGGTGCTATTTTATGAGGA+CGG	+	chr7_2:82368314-82368333	Msa1082300:CDS	40.0%
	CCCATAATTGATGGAGAATC+TGG	+	chr7_2:82368341-82368360	Msa1082300:CDS	40.0%
	CACGCTGGTAAGTATAATCA+TGG	+	chr7_2:82368538-82368557	Msa1082300:intron	40.0%
	AGTAACTAGCATGGAAGAGT+TGG	+	chr7_2:82368653-82368672	Msa1082300:intron	40.0%
	GTGTAACCTTGATCTCCTTT+AGG	+	chr7_2:82368748-82368767	Msa1082300:intron	40.0%
	CTTGAACCTAAAGGAGATCA+AGG	-	chr7_2:82368757-82368776	None:intergenic	40.0%
	CAACAAGAGCTTGAACCTAA+AGG	-	chr7_2:82368766-82368785	None:intergenic	40.0%
!	CTTTAGGTTCAAGCTCTTGT+TGG	+	chr7_2:82368764-82368783	Msa1082300:intron	40.0%
	TTTGGTAGACATAAGCTCGA+AGG	+	chr7_2:82368820-82368839	Msa1082300:CDS	40.0%
!!!	GTGTTTCAATGTTTTTGGGG+TGG	-	chr7_2:82368893-82368912	None:intergenic	40.0%
	TTGGATTTGTGATTCCCTGA+GGG	-	chr7_2:82368936-82368955	None:intergenic	40.0%
	TTTGGATTTGTGATTCCCTG+AGG	-	chr7_2:82368937-82368956	None:intergenic	40.0%
	GCAAGTAAGGAAGTTCAAAG+GGG	+	chr7_2:82368957-82368976	Msa1082300:CDS	40.0%
!	TGGTTTTCATCTTGTGAGCA+AGG	+	chr7_2:82369374-82369393	Msa1082300:three_prime_UTR	40.0%
	CCGACTACCAAGTAATATAG+AGG	+	chr7_2:82368088-82368107	Msa1082300:intron	40.0%
	GGGTAAAAAAGAAAGCAGTG+TGG	-	chr7_2:82368140-82368159	None:intergenic	40.0%
!!	AGAATGGTTGGTGAGAAAGA+TGG	-	chr7_2:82368175-82368194	None:intergenic	40.0%
	AAAATAGCACCTCCTGTGAA+AGG	-	chr7_2:82368307-82368326	None:intergenic	40.0%
!!!	ACAGGAGGTGCTATTTTATG+AGG	+	chr7_2:82368310-82368329	Msa1082300:intron	40.0%
!!!	GAGGTGCTATTTTATGAGGA+CGG	+	chr7_2:82368314-82368333	Msa1082300:CDS	40.0%
	CCCATAATTGATGGAGAATC+TGG	+	chr7_2:82368341-82368360	Msa1082300:CDS	40.0%
	CACGCTGGTAAGTATAATCA+TGG	+	chr7_2:82368538-82368557	Msa1082300:intron	40.0%
	AGTAACTAGCATGGAAGAGT+TGG	+	chr7_2:82368653-82368672	Msa1082300:intron	40.0%
	GTGTAACCTTGATCTCCTTT+AGG	+	chr7_2:82368748-82368767	Msa1082300:intron	40.0%
	CTTGAACCTAAAGGAGATCA+AGG	-	chr7_2:82368757-82368776	None:intergenic	40.0%
	CAACAAGAGCTTGAACCTAA+AGG	-	chr7_2:82368766-82368785	None:intergenic	40.0%
!	CTTTAGGTTCAAGCTCTTGT+TGG	+	chr7_2:82368764-82368783	Msa1082300:intron	40.0%
	TTTGGTAGACATAAGCTCGA+AGG	+	chr7_2:82368820-82368839	Msa1082300:CDS	40.0%
!!!	GTGTTTCAATGTTTTTGGGG+TGG	-	chr7_2:82368893-82368912	None:intergenic	40.0%
	TTGGATTTGTGATTCCCTGA+GGG	-	chr7_2:82368936-82368955	None:intergenic	40.0%
	TTTGGATTTGTGATTCCCTG+AGG	-	chr7_2:82368937-82368956	None:intergenic	40.0%
	GCAAGTAAGGAAGTTCAAAG+GGG	+	chr7_2:82368957-82368976	Msa1082300:CDS	40.0%
!	TGGTTTTCATCTTGTGAGCA+AGG	+	chr7_2:82369374-82369393	Msa1082300:three_prime_UTR	40.0%
	GTCGGAACTGATGTCAAACA+AGG	-	chr7_2:82368073-82368092	None:intergenic	45.0%
!	TGATAGTGACAGTCGTGTGT+AGG	-	chr7_2:82368520-82368539	None:intergenic	45.0%
	AGTAAGGAAGTTCAAAGGGG+AGG	+	chr7_2:82368960-82368979	Msa1082300:CDS	45.0%
	GTAAGGAAGTTCAAAGGGGA+GGG	+	chr7_2:82368961-82368980	Msa1082300:CDS	45.0%
	TTTCTGTTCCTCCGATAGTG+AGG	-	chr7_2:82369052-82369071	None:intergenic	45.0%
	GCATCTACTGTGATCCTTGT+CGG	+	chr7_2:82369253-82369272	Msa1082300:three_prime_UTR	45.0%
!	AGCTTGCTTTGTGTCTGCAA+TGG	+	chr7_2:82369354-82369373	Msa1082300:three_prime_UTR	45.0%
	CATCTTGTGAGCAAGGTGAA+AGG	+	chr7_2:82369381-82369400	Msa1082300:three_prime_UTR	45.0%
	GTCGGAACTGATGTCAAACA+AGG	-	chr7_2:82368073-82368092	None:intergenic	45.0%
!	TGATAGTGACAGTCGTGTGT+AGG	-	chr7_2:82368520-82368539	None:intergenic	45.0%
	AGTAAGGAAGTTCAAAGGGG+AGG	+	chr7_2:82368960-82368979	Msa1082300:CDS	45.0%
	GTAAGGAAGTTCAAAGGGGA+GGG	+	chr7_2:82368961-82368980	Msa1082300:CDS	45.0%
	TTTCTGTTCCTCCGATAGTG+AGG	-	chr7_2:82369052-82369071	None:intergenic	45.0%
	GCATCTACTGTGATCCTTGT+CGG	+	chr7_2:82369253-82369272	Msa1082300:three_prime_UTR	45.0%
!	AGCTTGCTTTGTGTCTGCAA+TGG	+	chr7_2:82369354-82369373	Msa1082300:three_prime_UTR	45.0%
	CATCTTGTGAGCAAGGTGAA+AGG	+	chr7_2:82369381-82369400	Msa1082300:three_prime_UTR	45.0%
	TCTGTTCCCCACCTCACTAT+CGG	+	chr7_2:82369038-82369057	Msa1082300:CDS	50.0%
	TGTTCCTCCGATAGTGAGGT+GGG	-	chr7_2:82369048-82369067	None:intergenic	50.0%
!	GGCACATGAGTGCCTTATTG+TGG	+	chr7_2:82369274-82369293	Msa1082300:three_prime_UTR	50.0%
	TCTGTTCCCCACCTCACTAT+CGG	+	chr7_2:82369038-82369057	Msa1082300:CDS	50.0%
	TGTTCCTCCGATAGTGAGGT+GGG	-	chr7_2:82369048-82369067	None:intergenic	50.0%
!	GGCACATGAGTGCCTTATTG+TGG	+	chr7_2:82369274-82369293	Msa1082300:three_prime_UTR	50.0%
	GACGGCGAGCCCATAATTGA+TGG	+	chr7_2:82368332-82368351	Msa1082300:CDS	55.0%
	CACGACTGTCACTATCACGC+TGG	+	chr7_2:82368523-82368542	Msa1082300:CDS	55.0%
	GTTCCTCCGATAGTGAGGTG+GGG	-	chr7_2:82369047-82369066	None:intergenic	55.0%
	CTGTTCCTCCGATAGTGAGG+TGG	-	chr7_2:82369049-82369068	None:intergenic	55.0%
	AAATGGGGGCGAGAAGCCTA+AGG	-	chr7_2:82369186-82369205	None:intergenic	55.0%
!	AAGGCACTCATGTGCCGACA+AGG	-	chr7_2:82369270-82369289	None:intergenic	55.0%
	GACGGCGAGCCCATAATTGA+TGG	+	chr7_2:82368332-82368351	Msa1082300:CDS	55.0%
	CACGACTGTCACTATCACGC+TGG	+	chr7_2:82368523-82368542	Msa1082300:CDS	55.0%
	GTTCCTCCGATAGTGAGGTG+GGG	-	chr7_2:82369047-82369066	None:intergenic	55.0%
	CTGTTCCTCCGATAGTGAGG+TGG	-	chr7_2:82369049-82369068	None:intergenic	55.0%
	AAATGGGGGCGAGAAGCCTA+AGG	-	chr7_2:82369186-82369205	None:intergenic	55.0%
!	AAGGCACTCATGTGCCGACA+AGG	-	chr7_2:82369270-82369289	None:intergenic	55.0%
	GTTCCCCACCTCACTATCGG+AGG	+	chr7_2:82369041-82369060	Msa1082300:CDS	60.0%
	GTTCCCCACCTCACTATCGG+AGG	+	chr7_2:82369041-82369060	Msa1082300:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	82367924	82369498	82367924	ID=Msa1082300;Name=Msa1082300
chr7_2	mRNA	82367924	82369498	82367924	ID=Msa1082300-mRNA-1;Parent=Msa1082300;Name=Msa1082300-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0\|0.75\|0.8\|0.8\|1\|1\|5\|400\|142
chr7_2	exon	82367924	82367983	82367924	ID=Msa1082300-mRNA-1:exon:21309;Parent=Msa1082300-mRNA-1
chr7_2	exon	82368314	82368373	82368314	ID=Msa1082300-mRNA-1:exon:21310;Parent=Msa1082300-mRNA-1
chr7_2	exon	82368467	82368544	82368467	ID=Msa1082300-mRNA-1:exon:21311;Parent=Msa1082300-mRNA-1
chr7_2	exon	82368770	82368841	82368770	ID=Msa1082300-mRNA-1:exon:21312;Parent=Msa1082300-mRNA-1
chr7_2	exon	82368940	82369498	82368940	ID=Msa1082300-mRNA-1:exon:21313;Parent=Msa1082300-mRNA-1
chr7_2	CDS	82367924	82367983	82367924	ID=Msa1082300-mRNA-1:cds;Parent=Msa1082300-mRNA-1
chr7_2	CDS	82368314	82368373	82368314	ID=Msa1082300-mRNA-1:cds;Parent=Msa1082300-mRNA-1
chr7_2	CDS	82368467	82368544	82368467	ID=Msa1082300-mRNA-1:cds;Parent=Msa1082300-mRNA-1
chr7_2	CDS	82368770	82368841	82368770	ID=Msa1082300-mRNA-1:cds;Parent=Msa1082300-mRNA-1
chr7_2	CDS	82368940	82369098	82368940	ID=Msa1082300-mRNA-1:cds;Parent=Msa1082300-mRNA-1
chr7_2	three_prime_UTR	82369099	82369498	82369099	ID=Msa1082300-mRNA-1:three_prime_utr;Parent=Msa1082300-mRNA-1

Gene Sequence

>Msa1082300

ATGGGAAAGGCATTTATTCTCATTGTTGTAAGACTTGACGACCTAGCTTCAATTTTAAGGGAGGTGCTATTTTATGAGGACGGCGAGCCCATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCAGCACCGCACCTCATGAACTTTTCAAAAGGGAAGGCAATGACCTACACACGACTGTCACTATCACGCTGGTTCAAGCTCTTGTTGGTTTTGAGAAGACCGTTAAACACCTTGATGAACATTTGGTAGACATAAGCTCGAAGGGAATCACAAATCCAAAGCAAGTAAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCACAAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTCTGTTCCCCACCTCACTATCGGAGGAACAGAAAACAAAAATAAAATCAATTCTTGGTTAG

Protein sequence

>Msa1082300

MGKAFILIVVRLDDLASILREVLFYEDGEPIIDGESGDLRFRISTAPHELFKREGNDLHTTVTITLVQALVGFEKTVKHLDEHLVDISSKGITNPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPTSLSEEQKTKIKSILG*