Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867160 | XP_003625951.1 | 90.991 | 222 | 1 | 1 | 1 | 203 | 1 | 222 | 3.09e-143 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867160 | sp|Q9LZK5|DNJ19_ARATH | 72.889 | 225 | 38 | 3 | 1 | 203 | 1 | 224 | 3.26e-107 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867160 | G7KSR8 | 90.991 | 222 | 1 | 1 | 1 | 203 | 1 | 222 | 1.47e-143 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003930 | Msa0867160 | 0.846691 | 1.852619e-59 | -8.615850e-47 |
| Msa0057890 | Msa0867160 | 0.868468 | 6.387178e-66 | -8.615850e-47 |
| Msa0102600 | Msa0867160 | 0.853426 | 2.408725e-61 | -8.615850e-47 |
| Msa0615220 | Msa0867160 | 0.821118 | 4.786304e-53 | -8.615850e-47 |
| Msa0626280 | Msa0867160 | 0.803147 | 4.004552e-49 | -8.615850e-47 |
| Msa0713510 | Msa0867160 | 0.804577 | 2.021072e-49 | -8.615850e-47 |
| Msa0828240 | Msa0867160 | 0.805864 | 1.086590e-49 | -8.615850e-47 |
| Msa0828660 | Msa0867160 | 0.807541 | 4.805654e-50 | -8.615850e-47 |
| Msa0147380 | Msa0867160 | 0.863440 | 2.486054e-64 | -8.615850e-47 |
| Msa0200850 | Msa0867160 | 0.807995 | 3.849403e-50 | -8.615850e-47 |
| Msa0215590 | Msa0867160 | 0.829506 | 4.954526e-55 | -8.615850e-47 |
| Msa0225670 | Msa0867160 | 0.807863 | 4.106999e-50 | -8.615850e-47 |
| Msa0227340 | Msa0867160 | 0.809755 | 1.617657e-50 | -8.615850e-47 |
| Msa0372420 | Msa0867160 | 0.836002 | 1.207717e-56 | -8.615850e-47 |
| Msa0391400 | Msa0867160 | 0.800836 | 1.195709e-48 | -8.615850e-47 |
| Msa0408300 | Msa0867160 | 0.811608 | 6.430067e-51 | -8.615850e-47 |
| Msa0432130 | Msa0867160 | 0.812196 | 4.787181e-51 | -8.615850e-47 |
| Msa0476640 | Msa0867160 | 0.811614 | 6.411294e-51 | -8.615850e-47 |
| Msa0255850 | Msa0867160 | 0.815911 | 7.252317e-52 | -8.615850e-47 |
| Msa0264830 | Msa0867160 | 0.808345 | 3.241955e-50 | -8.615850e-47 |
| Msa0271550 | Msa0867160 | 0.817617 | 3.005050e-52 | -8.615850e-47 |
| Msa0302870 | Msa0867160 | 0.807653 | 4.550236e-50 | -8.615850e-47 |
| Msa0304100 | Msa0867160 | 0.856792 | 2.531954e-62 | -8.615850e-47 |
| Msa0317740 | Msa0867160 | 0.823658 | 1.230287e-53 | -8.615850e-47 |
| Msa0319290 | Msa0867160 | 0.803762 | 2.985646e-49 | -8.615850e-47 |
| Msa0321080 | Msa0867160 | 0.803937 | 2.745818e-49 | -8.615850e-47 |
| Msa0333650 | Msa0867160 | 0.830967 | 2.178752e-55 | -8.615850e-47 |
| Msa0340340 | Msa0867160 | 0.811563 | 6.575021e-51 | -8.615850e-47 |
| Msa0506860 | Msa0867160 | 0.813931 | 1.993134e-51 | -8.615850e-47 |
| Msa0541040 | Msa0867160 | 0.801920 | 7.171162e-49 | -8.615850e-47 |
| Msa0588870 | Msa0867160 | 0.810066 | 1.386315e-50 | -8.615850e-47 |
| Msa0597000 | Msa0867160 | 0.802106 | 6.564822e-49 | -8.615850e-47 |
| Msa0867160 | Msa1041140 | 0.819378 | 1.198708e-52 | -8.615850e-47 |
| Msa0867160 | Msa1082290 | 0.903216 | 4.361726e-79 | -8.615850e-47 |
| Msa0867160 | Msa1168990 | 0.810982 | 8.793225e-51 | -8.615850e-47 |
| Msa0867160 | Msa1235380 | 0.847265 | 1.289856e-59 | -8.615850e-47 |
| Msa0867160 | Msa1276530 | 0.832088 | 1.153813e-55 | -8.615850e-47 |
| Msa0867160 | Msa1315440 | 0.817870 | 2.634699e-52 | -8.615850e-47 |
| Msa0867160 | Msa1356020 | 0.841517 | 4.529078e-58 | -8.615850e-47 |
| Msa0867160 | Msa1362020 | 0.837631 | 4.637932e-57 | -8.615850e-47 |
| Msa0867160 | Msa1418280 | 0.828011 | 1.139614e-54 | -8.615850e-47 |
| Msa0867160 | Msa1421460 | 0.844245 | 8.518374e-59 | -8.615850e-47 |
| Msa0867160 | Msa1422430 | 0.842541 | 2.428058e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867160 | MtrunA17_Chr7g0269841 | 90.991 | 222 | 1 | 1 | 1 | 203 | 1 | 222 | 2.84e-147 | 413 |
| Msa0867160 | MtrunA17_Chr8g0334811 | 32.883 | 222 | 104 | 7 | 27 | 203 | 15 | 236 | 1.26e-18 | 83.2 |
| Msa0867160 | MtrunA17_Chr4g0040501 | 39.655 | 116 | 31 | 4 | 27 | 103 | 5 | 120 | 3.29e-13 | 67.4 |
| Msa0867160 | MtrunA17_Chr3g0138471 | 36.275 | 102 | 41 | 3 | 27 | 104 | 5 | 106 | 8.40e-13 | 65.9 |
| Msa0867160 | MtrunA17_Chr2g0282761 | 61.702 | 47 | 17 | 1 | 27 | 72 | 5 | 51 | 3.99e-12 | 63.9 |
| Msa0867160 | MtrunA17_Chr2g0324921 | 61.702 | 47 | 17 | 1 | 27 | 72 | 5 | 51 | 6.97e-12 | 63.5 |
| Msa0867160 | MtrunA17_Chr2g0282741 | 38.739 | 111 | 34 | 4 | 27 | 103 | 5 | 115 | 8.17e-12 | 63.2 |
| Msa0867160 | MtrunA17_Chr1g0209551 | 62.222 | 45 | 17 | 0 | 28 | 72 | 18 | 62 | 2.18e-11 | 62.0 |
| Msa0867160 | MtrunA17_Chr4g0006391 | 57.447 | 47 | 19 | 1 | 27 | 72 | 5 | 51 | 2.24e-11 | 62.0 |
| Msa0867160 | MtrunA17_Chr6g0478651 | 34.307 | 137 | 57 | 4 | 25 | 131 | 67 | 200 | 8.38e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867160 | AT3G62600.1 | 72.889 | 225 | 38 | 3 | 1 | 203 | 1 | 224 | 3.31e-108 | 314 |
| Msa0867160 | AT5G01390.1 | 28.440 | 218 | 102 | 8 | 27 | 202 | 5 | 210 | 3.56e-15 | 73.2 |
| Msa0867160 | AT5G25530.2 | 41.176 | 102 | 32 | 4 | 27 | 100 | 5 | 106 | 3.98e-14 | 70.1 |
| Msa0867160 | AT3G08910.1 | 29.384 | 211 | 96 | 8 | 27 | 202 | 5 | 197 | 1.12e-13 | 68.9 |
| Msa0867160 | AT5G01390.4 | 28.283 | 198 | 90 | 7 | 27 | 182 | 5 | 192 | 2.29e-13 | 67.0 |
| Msa0867160 | AT5G25530.1 | 38.182 | 110 | 32 | 4 | 27 | 100 | 5 | 114 | 5.00e-13 | 67.0 |
| Msa0867160 | AT2G20560.1 | 27.064 | 218 | 108 | 7 | 27 | 202 | 5 | 213 | 9.00e-13 | 66.2 |
| Msa0867160 | AT5G01390.3 | 36.111 | 108 | 35 | 3 | 27 | 100 | 5 | 112 | 4.25e-12 | 63.5 |
| Msa0867160 | AT5G01390.2 | 36.111 | 108 | 35 | 3 | 27 | 100 | 5 | 112 | 6.75e-12 | 63.5 |
| Msa0867160 | AT4G28480.2 | 59.574 | 47 | 18 | 1 | 27 | 72 | 5 | 51 | 8.40e-12 | 63.2 |
| Msa0867160 | AT4G28480.1 | 59.574 | 47 | 18 | 1 | 27 | 72 | 5 | 51 | 1.04e-11 | 63.2 |
| Msa0867160 | AT5G05750.1 | 38.318 | 107 | 39 | 4 | 25 | 104 | 113 | 219 | 3.36e-11 | 61.6 |
| Msa0867160 | AT5G48030.1 | 28.821 | 229 | 112 | 5 | 20 | 199 | 88 | 314 | 6.40e-11 | 61.2 |
Find 70 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTAGAATTTGGGAATT+AGG | 0.151861 | 5_4:-69865465 | None:intergenic |
| ATGTGATTGGAATTAGAATT+TGG | 0.171341 | 5_4:-69865473 | None:intergenic |
| AATGTTTCTTTCAGTTTCTT+TGG | 0.228428 | 5_4:+69866803 | Msa0867160:intron |
| AACCCTTGAAGATTTGTATA+TGG | 0.272959 | 5_4:+69866895 | Msa0867160:CDS |
| CGACGACGTTATTGTTGATT+TGG | 0.287066 | 5_4:+69866868 | Msa0867160:CDS |
| GTGTAGGGCTTATAAGAAAA+TGG | 0.313675 | 5_4:-69868146 | None:intergenic |
| GAATTAGAATTTGGGAATTA+GGG | 0.327716 | 5_4:-69865464 | None:intergenic |
| GTCATTTGTTGAAACATTCC+AGG | 0.330187 | 5_4:-69867658 | None:intergenic |
| TTATTAGCTTCTTCATTTCC+CGG | 0.331012 | 5_4:-69865798 | None:intergenic |
| TCATTTCCCGGATTCTTATC+AGG | 0.331429 | 5_4:-69865786 | None:intergenic |
| TGTGATTGGAATTAGAATTT+GGG | 0.350143 | 5_4:-69865472 | None:intergenic |
| AGAATTTGGGAATTAGGGTT+TGG | 0.351219 | 5_4:-69865459 | None:intergenic |
| AGCAAAAGGCTCACTTTGAT+TGG | 0.352124 | 5_4:+69865279 | None:intergenic |
| TCTCTCCGAAACGCAATCTC+AGG | 0.359226 | 5_4:-69865503 | None:intergenic |
| CTCAGGGATTTCGATGTGAT+TGG | 0.371305 | 5_4:-69865486 | None:intergenic |
| GAATTTGGGAATTAGGGTTT+GGG | 0.392506 | 5_4:-69865458 | None:intergenic |
| ACAGAGAAGGAACAACAATT+TGG | 0.396887 | 5_4:-69865554 | None:intergenic |
| TTGATGCGCCATTGAAGATT+CGG | 0.405772 | 5_4:-69865527 | None:intergenic |
| TTTCCGCGAAGACTTGACTA+TGG | 0.405938 | 5_4:-69865346 | None:intergenic |
| ACCCTTGAAGATTTGTATAT+GGG | 0.411975 | 5_4:+69866896 | Msa0867160:CDS |
| GAGGTTTATCACAGGCAAAT+CGG | 0.416921 | 5_4:+69867634 | Msa0867160:CDS |
| GTCACTGTTGATATTGAGAA+AGG | 0.417431 | 5_4:+69868037 | Msa0867160:CDS |
| CATGCCGCTGGTGGAGGAAG+AGG | 0.435113 | 5_4:+69866313 | Msa0867160:CDS |
| AGGTTTATCACAGGCAAATC+GGG | 0.442881 | 5_4:+69867635 | Msa0867160:CDS |
| GTATCATCCTGATAAGAATC+CGG | 0.445522 | 5_4:+69865779 | Msa0867160:CDS |
| CGCCCATATACAAATCTTCA+AGG | 0.445585 | 5_4:-69866898 | None:intergenic |
| GTATATGGGCGGTTCCTTGA+AGG | 0.452344 | 5_4:+69866910 | Msa0867160:CDS |
| TTTCTTTCAGTTTCTTTGGC+GGG | 0.452768 | 5_4:+69866807 | Msa0867160:intron |
| TAAATGTGACCGCACCTTCA+AGG | 0.454412 | 5_4:-69866924 | None:intergenic |
| AATGTTGTAAAGCCAGCTCC+TGG | 0.471578 | 5_4:+69867586 | Msa0867160:CDS |
| TTCTTTCAGTTTCTTTGGCG+GGG | 0.473982 | 5_4:+69866808 | Msa0867160:intron |
| GGAGAGATCCGAATCTTCAA+TGG | 0.487027 | 5_4:+69865519 | Msa0867160:exon |
| GAAAGGCATGAAAGATGGCC+AGG | 0.488282 | 5_4:+69868054 | Msa0867160:CDS |
| TATCACAGGCAAATCGGGCC+TGG | 0.488499 | 5_4:+69867640 | Msa0867160:CDS |
| AAGCAGCATGCCGCTGGTGG+AGG | 0.488986 | 5_4:+69866307 | Msa0867160:CDS |
| GTTTCTTTCAGTTTCTTTGG+CGG | 0.494548 | 5_4:+69866806 | Msa0867160:intron |
| GTGCTAATGTCAAATACGTA+AGG | 0.495722 | 5_4:+69868002 | Msa0867160:CDS |
| AGAAGCTAATAAGAAATTTG+CGG | 0.505990 | 5_4:+69865809 | Msa0867160:CDS |
| TAGACATGCTTATAAGTGTA+GGG | 0.510005 | 5_4:-69868161 | None:intergenic |
| AAATCCCTGAGATTGCGTTT+CGG | 0.510468 | 5_4:+69865498 | Msa0867160:five_prime_UTR |
| TATCATCCTGATAAGAATCC+GGG | 0.516808 | 5_4:+69865780 | Msa0867160:CDS |
| TTAGACATGCTTATAAGTGT+AGG | 0.523976 | 5_4:-69868162 | None:intergenic |
| GCCGCTGGTGGAGGAAGAGG+TGG | 0.524267 | 5_4:+69866316 | Msa0867160:CDS |
| GCTGGTGGAGGAAGAGGTGG+TGG | 0.526997 | 5_4:+69866319 | Msa0867160:CDS |
| TTGAAGCAGCATGCCGCTGG+TGG | 0.528180 | 5_4:+69866304 | Msa0867160:CDS |
| GGTTTGAAGCAGCATGCCGC+TGG | 0.535682 | 5_4:+69866301 | Msa0867160:CDS |
| ATTGTAATTATCAGGTTTGG+AGG | 0.539622 | 5_4:+69867557 | Msa0867160:intron |
| ACTCCATAGTCAAGTCTTCG+CGG | 0.539710 | 5_4:+69865343 | Msa0867160:five_prime_UTR |
| TCTTTCAGTTTCTTTGGCGG+GGG | 0.541453 | 5_4:+69866809 | Msa0867160:intron |
| ACAAACTTTAAAAGTTTACC+TGG | 0.548928 | 5_4:-69868072 | None:intergenic |
| ATTGAGAAAGGCATGAAAGA+TGG | 0.548944 | 5_4:+69868049 | Msa0867160:CDS |
| TTGTAATTATCAGGTTTGGA+GGG | 0.555966 | 5_4:+69867558 | Msa0867160:intron |
| GTTTCAACAAATGACAGAGC+AGG | 0.577760 | 5_4:+69867666 | Msa0867160:CDS |
| CTCTCCGAAACGCAATCTCA+GGG | 0.582900 | 5_4:-69865502 | None:intergenic |
| AATCGCTTCTTCTATTACGA+CGG | 0.588377 | 5_4:-69865400 | None:intergenic |
| ACGCTGTAACTGTAGAAATG+AGG | 0.598744 | 5_4:+69867615 | Msa0867160:CDS |
| TGCTAATGTCAAATACGTAA+GGG | 0.599841 | 5_4:+69868003 | Msa0867160:CDS |
| TCAAGTGTCGAAAGGTGCAT+CGG | 0.599920 | 5_4:+69865716 | Msa0867160:CDS |
| AATAGCATAGAGCACAGAGA+AGG | 0.608834 | 5_4:-69865567 | None:intergenic |
| ACCACCTCTTCCTCCACCAG+CGG | 0.613282 | 5_4:-69866317 | None:intergenic |
| TATGGAGTTGACACTACGCT+AGG | 0.614069 | 5_4:-69865328 | None:intergenic |
| AAATTTGCGGAGATTAGCAA+TGG | 0.617908 | 5_4:+69865822 | Msa0867160:CDS |
| GTAGAAATGAGGTTTATCAC+AGG | 0.618569 | 5_4:+69867626 | Msa0867160:CDS |
| AATGTCAAATACGTAAGGGA+GGG | 0.618582 | 5_4:+69868007 | Msa0867160:CDS |
| AGGTGGTGGAATGAACATGC+AGG | 0.620609 | 5_4:+69866333 | Msa0867160:CDS |
| CTTGAAGATTTGTATATGGG+CGG | 0.625381 | 5_4:+69866899 | Msa0867160:CDS |
| GAAGAAGAGAAAATTGCGAA+AGG | 0.633709 | 5_4:+69866845 | Msa0867160:CDS |
| TAATGTCAAATACGTAAGGG+AGG | 0.634516 | 5_4:+69868006 | Msa0867160:CDS |
| GATATACTTCAAGTGTCGAA+AGG | 0.635494 | 5_4:+69865708 | Msa0867160:CDS |
| GCCCATATACAAATCTTCAA+GGG | 0.646270 | 5_4:-69866897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTATAAGCTATATT+AGG | + | chr5_4:69866046-69866065 | Msa0867160:intron | 10.0% |
| !!! | TATTTTTATAAGCTATATTA+GGG | + | chr5_4:69866047-69866066 | Msa0867160:intron | 10.0% |
| !! | AATCAAATAATATATGTTTA+TGG | + | chr5_4:69866500-69866519 | Msa0867160:intron | 10.0% |
| !!! | TTTTATTTATGATTTTCTAT+TGG | - | chr5_4:69867180-69867199 | None:intergenic | 10.0% |
| !! | ATATATAAATTAAACATTTC+TGG | - | chr5_4:69867833-69867852 | None:intergenic | 10.0% |
| !!! | ATTTTTATAAGCTATATTAG+GGG | + | chr5_4:69866048-69866067 | Msa0867160:intron | 15.0% |
| !! | AGAAATATTTATGATAAGTA+TGG | + | chr5_4:69866271-69866290 | Msa0867160:intron | 15.0% |
| !! | AATGACTATATTAAAATTTG+TGG | - | chr5_4:69866649-69866668 | None:intergenic | 15.0% |
| !! | TGTATTTAATTATTTACCAA+TGG | + | chr5_4:69866983-69867002 | Msa0867160:intron | 15.0% |
| !! | GTATTTAATTATTTACCAAT+GGG | + | chr5_4:69866984-69867003 | Msa0867160:intron | 15.0% |
| !! | ATTATTGTATTGTAATTATC+AGG | + | chr5_4:69867549-69867568 | Msa0867160:intron | 15.0% |
| !! | AAAATATACATCCTAAAAAA+TGG | - | chr5_4:69867745-69867764 | None:intergenic | 15.0% |
| !!! | CATAAATTTTTGCAAATATT+CGG | - | chr5_4:69867941-69867960 | None:intergenic | 15.0% |
| !! | TTTGCTTATAAATCTATGTT+TGG | + | chr5_4:69865665-69865684 | Msa0867160:intron | 20.0% |
| !! | TACATAAACACTTATATGAT+AGG | - | chr5_4:69865965-69865984 | None:intergenic | 20.0% |
| !! | AGTGAAAATGTTTACTTATA+AGG | + | chr5_4:69866017-69866036 | Msa0867160:intron | 20.0% |
| !!! | TTTTTATAAGCTATATTAGG+GGG | + | chr5_4:69866049-69866068 | Msa0867160:intron | 20.0% |
| !! | ACCATTAATAACCAAAATAA+GGG | - | chr5_4:69866197-69866216 | None:intergenic | 20.0% |
| !! | AACCATTAATAACCAAAATA+AGG | - | chr5_4:69866198-69866217 | None:intergenic | 20.0% |
| !! | ACATTTCAGATATGTATTAT+CGG | + | chr5_4:69866427-69866446 | Msa0867160:intron | 20.0% |
| !!! | TACTTTATTTTTACTTGCAT+TGG | + | chr5_4:69866455-69866474 | Msa0867160:intron | 20.0% |
| !!! | TTGTATGCTAATTTTTAGTA+TGG | + | chr5_4:69866742-69866761 | Msa0867160:intron | 20.0% |
| !!! | TGTATGCTAATTTTTAGTAT+GGG | + | chr5_4:69866743-69866762 | Msa0867160:intron | 20.0% |
| !! | TGAAAGAAACATTCATATTT+CGG | - | chr5_4:69866796-69866815 | None:intergenic | 20.0% |
| !! | TTGAATAATATACTAGTAGA+TGG | + | chr5_4:69867070-69867089 | Msa0867160:intron | 20.0% |
| !! | TGAATAATATACTAGTAGAT+GGG | + | chr5_4:69867071-69867090 | Msa0867160:intron | 20.0% |
| !!! | ATATCTGAGATTTATCAAAA+GGG | - | chr5_4:69867322-69867341 | None:intergenic | 20.0% |
| !!! | AATATCTGAGATTTATCAAA+AGG | - | chr5_4:69867323-69867342 | None:intergenic | 20.0% |
| !!! | TTTATTCTTGTCCATTTTTT+AGG | + | chr5_4:69867731-69867750 | Msa0867160:intron | 20.0% |
| !!! | AACTTTTAAAGTTTGTATGT+AGG | + | chr5_4:69868079-69868098 | Msa0867160:exon | 20.0% |
| ! | GAATTAGAATTTGGGAATTA+GGG | - | chr5_4:69865467-69865486 | None:intergenic | 25.0% |
| ! | TGTGATTGGAATTAGAATTT+GGG | - | chr5_4:69865475-69865494 | None:intergenic | 25.0% |
| ! | ATGTGATTGGAATTAGAATT+TGG | - | chr5_4:69865476-69865495 | None:intergenic | 25.0% |
| ! | AGGAAAACAGAAAAATTACA+CGG | - | chr5_4:69865608-69865627 | None:intergenic | 25.0% |
| ! | AGAAGCTAATAAGAAATTTG+CGG | + | chr5_4:69865809-69865828 | Msa0867160:CDS | 25.0% |
| !! | TTTTATAAGCTATATTAGGG+GGG | + | chr5_4:69866050-69866069 | Msa0867160:intron | 25.0% |
| !!! | ATTAAGTTGAAAACAGCTTA+TGG | + | chr5_4:69866080-69866099 | Msa0867160:intron | 25.0% |
| !!! | TCCCTTATTTTGGTTATTAA+TGG | + | chr5_4:69866193-69866212 | Msa0867160:intron | 25.0% |
| !! | ATGTGATAGTGTTAACTTAT+AGG | - | chr5_4:69866411-69866430 | None:intergenic | 25.0% |
| ! | ATTATCACACTAACTGTAAT+CGG | + | chr5_4:69866561-69866580 | Msa0867160:intron | 25.0% |
| ! | GAATCAATAAAACCATATGA+AGG | - | chr5_4:69866589-69866608 | None:intergenic | 25.0% |
| !!! | GTATGCTAATTTTTAGTATG+GGG | + | chr5_4:69866744-69866763 | Msa0867160:intron | 25.0% |
| ! | AATGTTTCTTTCAGTTTCTT+TGG | + | chr5_4:69866803-69866822 | Msa0867160:intron | 25.0% |
| !! | GTATTTTCATTGAGAAAATC+AGG | + | chr5_4:69867372-69867391 | Msa0867160:intron | 25.0% |
| ! | TGTATTGTAATTATCAGGTT+TGG | + | chr5_4:69867554-69867573 | Msa0867160:intron | 25.0% |
| ! | AAAAATGGACAAGAATAAAC+AGG | - | chr5_4:69867730-69867749 | None:intergenic | 25.0% |
| !! | ACAAACTTTAAAAGTTTACC+TGG | - | chr5_4:69868075-69868094 | None:intergenic | 25.0% |
| GGAATTAGAATTTGGGAATT+AGG | - | chr5_4:69865468-69865487 | None:intergenic | 30.0% | |
| TTTCGAGAAACGGTAATAAA+AGG | - | chr5_4:69865628-69865647 | None:intergenic | 30.0% | |
| !! | TCAACAACATTTTCGAGAAA+CGG | - | chr5_4:69865638-69865657 | None:intergenic | 30.0% |
| ! | TTATTAGCTTCTTCATTTCC+CGG | - | chr5_4:69865801-69865820 | None:intergenic | 30.0% |
| ACTTATTCGAAATTATCGAG+TGG | - | chr5_4:69866161-69866180 | None:intergenic | 30.0% | |
| !! | ATACAAACAGTCCCTTATTT+TGG | + | chr5_4:69866183-69866202 | Msa0867160:intron | 30.0% |
| TTATGATAAGTATGGTGAAG+AGG | + | chr5_4:69866279-69866298 | Msa0867160:intron | 30.0% | |
| TATGATAAGTATGGTGAAGA+GGG | + | chr5_4:69866280-69866299 | Msa0867160:intron | 30.0% | |
| GTTAAGAACTAATCAAGCAA+AGG | - | chr5_4:69866389-69866408 | None:intergenic | 30.0% | |
| CTAAGAAAAGCAGTTATTGA+AGG | + | chr5_4:69866523-69866542 | Msa0867160:intron | 30.0% | |
| TAAAAATTGATGCAGACATG+AGG | - | chr5_4:69866621-69866640 | None:intergenic | 30.0% | |
| ATTATGTTGTCATGTGTAAG+TGG | + | chr5_4:69866684-69866703 | Msa0867160:intron | 30.0% | |
| !!! | TAATTTTTAGTATGGGGTTC+TGG | + | chr5_4:69866750-69866769 | Msa0867160:intron | 30.0% |
| AACCCTTGAAGATTTGTATA+TGG | + | chr5_4:69866895-69866914 | Msa0867160:CDS | 30.0% | |
| ACCCTTGAAGATTTGTATAT+GGG | + | chr5_4:69866896-69866915 | Msa0867160:CDS | 30.0% | |
| AATATACTAGTAGATGGGTA+TGG | + | chr5_4:69867076-69867095 | Msa0867160:intron | 30.0% | |
| ATATACTAGTAGATGGGTAT+GGG | + | chr5_4:69867077-69867096 | Msa0867160:intron | 30.0% | |
| CCATGATAATACATGAATAG+TGG | - | chr5_4:69867409-69867428 | None:intergenic | 30.0% | |
| CCACTATTCATGTATTATCA+TGG | + | chr5_4:69867406-69867425 | Msa0867160:intron | 30.0% | |
| ATTGTAATTATCAGGTTTGG+AGG | + | chr5_4:69867557-69867576 | Msa0867160:intron | 30.0% | |
| TTGTAATTATCAGGTTTGGA+GGG | + | chr5_4:69867558-69867577 | Msa0867160:intron | 30.0% | |
| GACATTTCATTGTATGATTG+TGG | + | chr5_4:69867804-69867823 | Msa0867160:intron | 30.0% | |
| !!! | TTTTTTCCTTATGTGCTTGA+GGG | + | chr5_4:69867881-69867900 | Msa0867160:intron | 30.0% |
| TGCTAATGTCAAATACGTAA+GGG | + | chr5_4:69868003-69868022 | Msa0867160:CDS | 30.0% | |
| TAGACATGCTTATAAGTGTA+GGG | - | chr5_4:69868164-69868183 | None:intergenic | 30.0% | |
| TTAGACATGCTTATAAGTGT+AGG | - | chr5_4:69868165-69868184 | None:intergenic | 30.0% | |
| AATCGCTTCTTCTATTACGA+CGG | - | chr5_4:69865403-69865422 | None:intergenic | 35.0% | |
| GAATTTGGGAATTAGGGTTT+GGG | - | chr5_4:69865461-69865480 | None:intergenic | 35.0% | |
| AGAATTTGGGAATTAGGGTT+TGG | - | chr5_4:69865462-69865481 | None:intergenic | 35.0% | |
| ACAGAGAAGGAACAACAATT+TGG | - | chr5_4:69865557-69865576 | None:intergenic | 35.0% | |
| ACAGAAAAATTACACGGCAA+TGG | - | chr5_4:69865602-69865621 | None:intergenic | 35.0% | |
| !! | GATATACTTCAAGTGTCGAA+AGG | + | chr5_4:69865708-69865727 | Msa0867160:CDS | 35.0% |
| GTATCATCCTGATAAGAATC+CGG | + | chr5_4:69865779-69865798 | Msa0867160:CDS | 35.0% | |
| TATCATCCTGATAAGAATCC+GGG | + | chr5_4:69865780-69865799 | Msa0867160:CDS | 35.0% | |
| AAATTTGCGGAGATTAGCAA+TGG | + | chr5_4:69865822-69865841 | Msa0867160:CDS | 35.0% | |
| AACTAATCAAGCAAAGGCTA+AGG | - | chr5_4:69866383-69866402 | None:intergenic | 35.0% | |
| AGCAGTTATTGAAGGCTATT+AGG | + | chr5_4:69866531-69866550 | Msa0867160:intron | 35.0% | |
| GCAGTTATTGAAGGCTATTA+GGG | + | chr5_4:69866532-69866551 | Msa0867160:intron | 35.0% | |
| TGCTATGTTCTTGATGTGTA+TGG | + | chr5_4:69866709-69866728 | Msa0867160:intron | 35.0% | |
| GCTATGTTCTTGATGTGTAT+GGG | + | chr5_4:69866710-69866729 | Msa0867160:intron | 35.0% | |
| CTATGTTCTTGATGTGTATG+GGG | + | chr5_4:69866711-69866730 | Msa0867160:intron | 35.0% | |
| GTTTCTTTCAGTTTCTTTGG+CGG | + | chr5_4:69866806-69866825 | Msa0867160:intron | 35.0% | |
| TTTCTTTCAGTTTCTTTGGC+GGG | + | chr5_4:69866807-69866826 | Msa0867160:intron | 35.0% | |
| GAAGAAGAGAAAATTGCGAA+AGG | + | chr5_4:69866845-69866864 | Msa0867160:CDS | 35.0% | |
| GCCCATATACAAATCTTCAA+GGG | - | chr5_4:69866900-69866919 | None:intergenic | 35.0% | |
| CTTGAAGATTTGTATATGGG+CGG | + | chr5_4:69866899-69866918 | Msa0867160:CDS | 35.0% | |
| GACACATATATGTTACCCAT+TGG | - | chr5_4:69867002-69867021 | None:intergenic | 35.0% | |
| TAGATTCGAGACTATCATAC+TGG | + | chr5_4:69867101-69867120 | Msa0867160:intron | 35.0% | |
| AACGAAGAAGAACTGCTTTA+GGG | + | chr5_4:69867235-69867254 | Msa0867160:intron | 35.0% | |
| GGAAATAAAGAATAGCCTCT+GGG | - | chr5_4:69867301-69867320 | None:intergenic | 35.0% | |
| TGGTGTAGTTGTAAACTAAG+TGG | + | chr5_4:69867426-69867445 | Msa0867160:intron | 35.0% | |
| ACTTGCGAATTCTACACTTT+GGG | - | chr5_4:69867506-69867525 | None:intergenic | 35.0% | |
| GTAGAAATGAGGTTTATCAC+AGG | + | chr5_4:69867626-69867645 | Msa0867160:CDS | 35.0% | |
| ! | GTCATTTGTTGAAACATTCC+AGG | - | chr5_4:69867661-69867680 | None:intergenic | 35.0% |
| GCACATAAGGAAAAAAGACA+AGG | - | chr5_4:69867877-69867896 | None:intergenic | 35.0% | |
| !!! | CTTTTTTCCTTATGTGCTTG+AGG | + | chr5_4:69867880-69867899 | Msa0867160:intron | 35.0% |
| ! | TTTTTCCTTATGTGCTTGAG+GGG | + | chr5_4:69867882-69867901 | Msa0867160:intron | 35.0% |
| GTGCTAATGTCAAATACGTA+AGG | + | chr5_4:69868002-69868021 | Msa0867160:CDS | 35.0% | |
| TAATGTCAAATACGTAAGGG+AGG | + | chr5_4:69868006-69868025 | Msa0867160:CDS | 35.0% | |
| AATGTCAAATACGTAAGGGA+GGG | + | chr5_4:69868007-69868026 | Msa0867160:CDS | 35.0% | |
| GTCACTGTTGATATTGAGAA+AGG | + | chr5_4:69868037-69868056 | Msa0867160:CDS | 35.0% | |
| ! | ATTGAGAAAGGCATGAAAGA+TGG | + | chr5_4:69868049-69868068 | Msa0867160:CDS | 35.0% |
| GTGTAGGGCTTATAAGAAAA+TGG | - | chr5_4:69868149-69868168 | None:intergenic | 35.0% | |
| AAATCCCTGAGATTGCGTTT+CGG | + | chr5_4:69865498-69865517 | Msa0867160:five_prime_UTR | 40.0% | |
| TTGATGCGCCATTGAAGATT+CGG | - | chr5_4:69865530-69865549 | None:intergenic | 40.0% | |
| AATAGCATAGAGCACAGAGA+AGG | - | chr5_4:69865570-69865589 | None:intergenic | 40.0% | |
| TCATTTCCCGGATTCTTATC+AGG | - | chr5_4:69865789-69865808 | None:intergenic | 40.0% | |
| AAGCTATATTAGGGGGGTTA+TGG | + | chr5_4:69866056-69866075 | Msa0867160:intron | 40.0% | |
| AGACTGCTTGAAAGAGCTTA+TGG | - | chr5_4:69866124-69866143 | None:intergenic | 40.0% | |
| !! | GTCAGCATATGAGGTATTGT+CGG | + | chr5_4:69866237-69866256 | Msa0867160:intron | 40.0% |
| CTGTAATCGGAACCTTCATA+TGG | + | chr5_4:69866574-69866593 | Msa0867160:intron | 40.0% | |
| TTCTTTCAGTTTCTTTGGCG+GGG | + | chr5_4:69866808-69866827 | Msa0867160:intron | 40.0% | |
| ! | CGACGACGTTATTGTTGATT+TGG | + | chr5_4:69866868-69866887 | Msa0867160:CDS | 40.0% |
| CGCCCATATACAAATCTTCA+AGG | - | chr5_4:69866901-69866920 | None:intergenic | 40.0% | |
| CAACGAAGAAGAACTGCTTT+AGG | + | chr5_4:69867234-69867253 | Msa0867160:intron | 40.0% | |
| ACGAAGAAGAACTGCTTTAG+GGG | + | chr5_4:69867236-69867255 | Msa0867160:intron | 40.0% | |
| GGGAAATAAAGAATAGCCTC+TGG | - | chr5_4:69867302-69867321 | None:intergenic | 40.0% | |
| GACTTGCGAATTCTACACTT+TGG | - | chr5_4:69867507-69867526 | None:intergenic | 40.0% | |
| ACGCTGTAACTGTAGAAATG+AGG | + | chr5_4:69867615-69867634 | Msa0867160:CDS | 40.0% | |
| GAGGTTTATCACAGGCAAAT+CGG | + | chr5_4:69867634-69867653 | Msa0867160:CDS | 40.0% | |
| AGGTTTATCACAGGCAAATC+GGG | + | chr5_4:69867635-69867654 | Msa0867160:CDS | 40.0% | |
| GTTTCAACAAATGACAGAGC+AGG | + | chr5_4:69867666-69867685 | Msa0867160:CDS | 40.0% | |
| GCAGGTAAATATCATCTTCG+AGG | + | chr5_4:69867684-69867703 | Msa0867160:intron | 40.0% | |
| ! | ATTTTGCCCTGCAAATACAC+TGG | + | chr5_4:69867760-69867779 | Msa0867160:intron | 40.0% |
| TAGAAGCCAGTGTATTTGCA+GGG | - | chr5_4:69867769-69867788 | None:intergenic | 40.0% | |
| TATGGAGTTGACACTACGCT+AGG | - | chr5_4:69865331-69865350 | None:intergenic | 45.0% | |
| ACTCCATAGTCAAGTCTTCG+CGG | + | chr5_4:69865343-69865362 | Msa0867160:five_prime_UTR | 45.0% | |
| TTTCCGCGAAGACTTGACTA+TGG | - | chr5_4:69865349-69865368 | None:intergenic | 45.0% | |
| ! | ACGGAAGCTTTTACAGTGAC+AGG | - | chr5_4:69865384-69865403 | None:intergenic | 45.0% |
| CTCAGGGATTTCGATGTGAT+TGG | - | chr5_4:69865489-69865508 | None:intergenic | 45.0% | |
| GGAGAGATCCGAATCTTCAA+TGG | + | chr5_4:69865519-69865538 | Msa0867160:exon | 45.0% | |
| !! | TCAAGTGTCGAAAGGTGCAT+CGG | + | chr5_4:69865716-69865735 | Msa0867160:CDS | 45.0% |
| !!! | GGGTTCTGGACTTGCTTTTA+TGG | + | chr5_4:69866764-69866783 | Msa0867160:intron | 45.0% |
| TCTTTCAGTTTCTTTGGCGG+GGG | + | chr5_4:69866809-69866828 | Msa0867160:intron | 45.0% | |
| TAAATGTGACCGCACCTTCA+AGG | - | chr5_4:69866927-69866946 | None:intergenic | 45.0% | |
| CTGACATCATGTATTCCCAG+AGG | + | chr5_4:69867283-69867302 | Msa0867160:intron | 45.0% | |
| AATGTTGTAAAGCCAGCTCC+TGG | + | chr5_4:69867586-69867605 | Msa0867160:CDS | 45.0% | |
| ! | CAGTTACAGCGTCTTTTTCC+AGG | - | chr5_4:69867607-69867626 | None:intergenic | 45.0% |
| CTAGAAGCCAGTGTATTTGC+AGG | - | chr5_4:69867770-69867789 | None:intergenic | 45.0% | |
| TGTGTGATATCTACCTGTCC+AGG | + | chr5_4:69867967-69867986 | Msa0867160:intron | 45.0% | |
| TAGCACATTGATCACAGACC+TGG | - | chr5_4:69867988-69868007 | None:intergenic | 45.0% | |
| ! | AGCTTTTACAGTGACAGGCG+TGG | - | chr5_4:69865379-69865398 | None:intergenic | 50.0% |
| CTCTCCGAAACGCAATCTCA+GGG | - | chr5_4:69865505-69865524 | None:intergenic | 50.0% | |
| TCTCTCCGAAACGCAATCTC+AGG | - | chr5_4:69865506-69865525 | None:intergenic | 50.0% | |
| GTTGCTGCTGTCAGCATATG+AGG | + | chr5_4:69866228-69866247 | Msa0867160:intron | 50.0% | |
| !! | AGGTGGTGGAATGAACATGC+AGG | + | chr5_4:69866333-69866352 | Msa0867160:CDS | 50.0% |
| TCTTGATGTGTATGGGGCTC+TGG | + | chr5_4:69866717-69866736 | Msa0867160:intron | 50.0% | |
| TTTCTTTGGCGGGGGATCAA+TGG | + | chr5_4:69866817-69866836 | Msa0867160:CDS | 50.0% | |
| GTATATGGGCGGTTCCTTGA+AGG | + | chr5_4:69866910-69866929 | Msa0867160:CDS | 50.0% | |
| !!! | ACTGGTTTTCACGTGACACG+CGG | + | chr5_4:69867119-69867138 | Msa0867160:intron | 50.0% |
| CTTATGTGCTTGAGGGGACT+GGG | + | chr5_4:69867888-69867907 | Msa0867160:intron | 50.0% | |
| TTATGTGCTTGAGGGGACTG+GGG | + | chr5_4:69867889-69867908 | Msa0867160:intron | 50.0% | |
| CATTGATCACAGACCTGGAC+AGG | - | chr5_4:69867983-69868002 | None:intergenic | 50.0% | |
| ! | GAAAGGCATGAAAGATGGCC+AGG | + | chr5_4:69868054-69868073 | Msa0867160:CDS | 50.0% |
| ! | CAGCGTCTTTTTCCAGGAGC+TGG | - | chr5_4:69867601-69867620 | None:intergenic | 55.0% |
| TATCACAGGCAAATCGGGCC+TGG | + | chr5_4:69867640-69867659 | Msa0867160:CDS | 55.0% | |
| CCAGTCCCCTCAAGCACATA+AGG | - | chr5_4:69867890-69867909 | None:intergenic | 55.0% | |
| CCTTATGTGCTTGAGGGGAC+TGG | + | chr5_4:69867887-69867906 | Msa0867160:intron | 55.0% | |
| ! | GGTTTGAAGCAGCATGCCGC+TGG | + | chr5_4:69866301-69866320 | Msa0867160:CDS | 60.0% |
| TTGAAGCAGCATGCCGCTGG+TGG | + | chr5_4:69866304-69866323 | Msa0867160:CDS | 60.0% | |
| ACCACCTCTTCCTCCACCAG+CGG | - | chr5_4:69866320-69866339 | None:intergenic | 60.0% | |
| CTTTGGCGGGGGATCAATGG+AGG | + | chr5_4:69866820-69866839 | Msa0867160:CDS | 60.0% | |
| TGGGCGGTTCCTTGAAGGTG+CGG | + | chr5_4:69866915-69866934 | Msa0867160:intron | 60.0% | |
| TTGAGGGGACTGGGGTGTGA+AGG | + | chr5_4:69867897-69867916 | Msa0867160:intron | 60.0% | |
| AAGCAGCATGCCGCTGGTGG+AGG | + | chr5_4:69866307-69866326 | Msa0867160:CDS | 65.0% | |
| CATGCCGCTGGTGGAGGAAG+AGG | + | chr5_4:69866313-69866332 | Msa0867160:CDS | 65.0% | |
| GCTGGTGGAGGAAGAGGTGG+TGG | + | chr5_4:69866319-69866338 | Msa0867160:CDS | 65.0% | |
| GCCGCTGGTGGAGGAAGAGG+TGG | + | chr5_4:69866316-69866335 | Msa0867160:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 69865282 | 69868250 | 69865282 | ID=Msa0867160;Name=Msa0867160 |
| chr5_4 | mRNA | 69865282 | 69868250 | 69865282 | ID=Msa0867160-mRNA-1;Parent=Msa0867160;Name=Msa0867160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=256|0.8|0.83|1|1|1|6|163|206 |
| chr5_4 | exon | 69865282 | 69865608 | 69865282 | ID=Msa0867160-mRNA-1:exon:21926;Parent=Msa0867160-mRNA-1 |
| chr5_4 | exon | 69865695 | 69865843 | 69865695 | ID=Msa0867160-mRNA-1:exon:21927;Parent=Msa0867160-mRNA-1 |
| chr5_4 | exon | 69866299 | 69866368 | 69866299 | ID=Msa0867160-mRNA-1:exon:21928;Parent=Msa0867160-mRNA-1 |
| chr5_4 | exon | 69866817 | 69866931 | 69866817 | ID=Msa0867160-mRNA-1:exon:21929;Parent=Msa0867160-mRNA-1 |
| chr5_4 | exon | 69867571 | 69867687 | 69867571 | ID=Msa0867160-mRNA-1:exon:21930;Parent=Msa0867160-mRNA-1 |
| chr5_4 | exon | 69867989 | 69868250 | 69867989 | ID=Msa0867160-mRNA-1:exon:21931;Parent=Msa0867160-mRNA-1 |
| chr5_4 | five_prime_UTR | 69865282 | 69865537 | 69865282 | ID=Msa0867160-mRNA-1:five_prime_utr;Parent=Msa0867160-mRNA-1 |
| chr5_4 | CDS | 69865538 | 69865608 | 69865538 | ID=Msa0867160-mRNA-1:cds;Parent=Msa0867160-mRNA-1 |
| chr5_4 | CDS | 69865695 | 69865843 | 69865695 | ID=Msa0867160-mRNA-1:cds;Parent=Msa0867160-mRNA-1 |
| chr5_4 | CDS | 69866299 | 69866368 | 69866299 | ID=Msa0867160-mRNA-1:cds;Parent=Msa0867160-mRNA-1 |
| chr5_4 | CDS | 69866817 | 69866931 | 69866817 | ID=Msa0867160-mRNA-1:cds;Parent=Msa0867160-mRNA-1 |
| chr5_4 | CDS | 69867571 | 69867687 | 69867571 | ID=Msa0867160-mRNA-1:cds;Parent=Msa0867160-mRNA-1 |
| chr5_4 | CDS | 69867989 | 69868087 | 69867989 | ID=Msa0867160-mRNA-1:cds;Parent=Msa0867160-mRNA-1 |
| chr5_4 | three_prime_UTR | 69868088 | 69868250 | 69868088 | ID=Msa0867160-mRNA-1:three_prime_utr;Parent=Msa0867160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
