AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842240 MtrunA17_Chr5g0412101 94.526 475 26 0 1 475 1 475 0.0 899
Msa0842240 MtrunA17_Chr5g0412131 85.474 475 68 1 1 475 1 474 0.0 829
Msa0842240 MtrunA17_Chr5g0412111 77.516 467 101 2 10 475 3 466 0.0 763
Msa0842240 MtrunA17_Chr5g0426431 38.494 478 271 11 8 470 8 477 1.58e-95 296
Msa0842240 MtrunA17_Chr6g0454141 35.185 486 272 11 12 470 10 479 2.00e-94 294
Msa0842240 MtrunA17_Chr3g0092641 37.708 480 272 12 8 470 8 477 6.79e-94 292
Msa0842240 MtrunA17_Chr6g0454181 34.420 491 277 12 8 470 6 479 2.23e-90 283
Msa0842240 MtrunA17_Chr2g0278711 36.998 473 277 10 12 470 11 476 2.39e-90 283
Msa0842240 MtrunA17_Chr6g0454131 35.583 489 273 10 8 470 6 478 4.76e-90 283
Msa0842240 MtrunA17_Chr4g0050341 34.898 490 282 11 7 471 14 491 5.04e-90 283
Msa0842240 MtrunA17_Chr6g0454261 32.860 493 284 12 7 470 5 479 5.62e-90 282
Msa0842240 MtrunA17_Chr6g0454291 35.787 489 271 11 9 470 4 476 6.73e-90 282
Msa0842240 MtrunA17_Chr6g0454121 34.765 489 277 11 8 470 6 478 7.29e-90 282
Msa0842240 MtrunA17_Chr7g0217881 36.059 477 262 12 12 470 10 461 4.53e-89 280
Msa0842240 MtrunA17_Chr6g0454401 34.029 479 288 10 12 470 10 480 4.56e-89 280
Msa0842240 MtrunA17_Chr6g0454331 34.091 484 288 12 9 470 4 478 6.92e-89 280
Msa0842240 MtrunA17_Chr6g0454191 35.208 480 281 12 12 470 10 480 5.95e-88 277
Msa0842240 MtrunA17_Chr3g0118671 35.477 482 274 13 12 470 6 473 1.25e-87 276
Msa0842240 MtrunA17_Chr6g0453961 32.990 485 293 11 8 470 15 489 1.73e-87 276
Msa0842240 MtrunA17_Chr8g0359821 34.096 481 282 11 12 470 10 477 3.01e-87 275
Msa0842240 MtrunA17_Chr3g0118661 36.134 476 274 12 12 468 13 477 5.74e-87 275
Msa0842240 MtrunA17_Chr3g0118691 35.625 480 276 12 12 470 15 482 9.56e-87 274
Msa0842240 MtrunA17_Chr6g0452771 35.234 491 273 11 8 470 6 479 2.65e-85 270
Msa0842240 MtrunA17_Chr3g0118771 34.576 483 273 12 12 468 21 486 2.99e-85 270
Msa0842240 MtrunA17_Chr6g0454361 34.310 478 283 10 12 468 11 478 4.65e-85 270
Msa0842240 MtrunA17_Chr6g0454301 34.519 478 284 11 12 470 263 730 7.45e-85 276
Msa0842240 MtrunA17_Chr6g0454301 40.435 230 130 4 242 468 2 227 4.21e-50 182
Msa0842240 MtrunA17_Chr3g0078841 33.820 479 288 12 9 468 7 475 1.28e-83 266
Msa0842240 MtrunA17_Chr6g0453951 32.292 480 294 10 12 470 57 526 1.50e-83 267
Msa0842240 MtrunA17_Chr5g0423981 34.188 468 274 11 8 470 6 444 2.01e-83 264
Msa0842240 MtrunA17_Chr3g0118701 34.947 475 282 13 12 468 15 480 7.69e-83 264
Msa0842240 MtrunA17_Chr8g0336331 33.054 478 292 10 11 470 9 476 1.25e-82 263
Msa0842240 MtrunA17_Chr6g0454201 34.362 486 286 12 7 470 6 480 4.59e-82 262
Msa0842240 MtrunA17_Chr3g0118711 33.538 489 297 14 1 470 1 480 1.27e-81 261
Msa0842240 MtrunA17_Chr6g0454211 34.702 487 273 13 12 470 297 766 1.51e-81 268
Msa0842240 MtrunA17_Chr6g0454211 33.460 263 136 5 132 389 8 236 5.17e-40 153
Msa0842240 MtrunA17_Chr6g0454351 32.716 486 267 13 12 470 12 464 7.98e-81 258
Msa0842240 MtrunA17_Chr6g0454341 32.285 477 296 11 12 470 10 477 9.42e-80 256
Msa0842240 MtrunA17_Chr6g0454151 33.198 491 283 11 7 470 5 477 1.18e-79 255
Msa0842240 MtrunA17_Chr6g0454321 32.558 473 280 11 12 460 10 467 1.43e-76 252
Msa0842240 MtrunA17_Chr3g0118751 32.917 480 256 12 12 468 6 442 2.38e-75 243
Msa0842240 MtrunA17_Chr3g0112761 33.747 483 275 13 6 474 2 453 8.56e-73 237
Msa0842240 MtrunA17_Chr3g0112771 32.640 481 287 13 1 472 1 453 8.92e-72 234
Msa0842240 MtrunA17_Chr5g0426401 41.118 304 167 8 173 470 13 310 2.06e-68 221
Msa0842240 MtrunA17_Chr6g0454271 37.413 286 174 3 187 470 4 286 1.93e-66 215
Msa0842240 MtrunA17_Chr6g0454251 34.236 406 223 12 12 390 7 395 2.15e-66 218
Msa0842240 MtrunA17_Chr4g0032331 32.515 489 275 15 1 472 1 451 3.31e-66 219
Msa0842240 MtrunA17_Chr8g0380531 33.196 485 283 15 4 473 2 460 2.37e-64 215
Msa0842240 MtrunA17_Chr6g0464871 32.008 478 268 15 11 467 22 463 1.60e-59 202
Msa0842240 MtrunA17_Chr3g0118721 36.585 287 172 5 190 470 7 289 8.06e-59 195
Msa0842240 MtrunA17_Chr7g0249981 30.309 485 274 16 12 474 25 467 1.99e-58 200
Msa0842240 MtrunA17_Chr5g0414321 31.762 488 263 18 12 473 11 454 2.62e-57 196
Msa0842240 MtrunA17_Chr5g0414331 31.557 488 264 17 12 473 13 456 3.67e-57 196
Msa0842240 MtrunA17_Chr8g0366391 31.198 484 297 17 12 472 9 479 2.76e-56 194
Msa0842240 MtrunA17_Chr7g0250001 29.350 477 278 15 12 467 6 444 4.58e-55 190
Msa0842240 MtrunA17_Chr6g0464841 31.172 478 272 15 11 467 10 451 9.00e-55 189
Msa0842240 MtrunA17_Chr7g0218831 30.490 469 279 11 12 469 6 438 1.41e-54 188
Msa0842240 MtrunA17_Chr7g0218841 31.435 474 269 15 12 469 6 439 1.17e-53 186
Msa0842240 MtrunA17_Chr6g0454221 41.304 230 129 4 242 468 2 228 3.08e-53 181
Msa0842240 MtrunA17_Chr3g0121991 30.928 485 291 13 12 470 79 545 4.98e-53 187
Msa0842240 MtrunA17_Chr1g0207981 31.911 492 284 21 8 473 9 475 8.19e-53 185
Msa0842240 MtrunA17_Chr5g0401721 28.252 492 295 15 8 468 4 468 1.03e-52 184
Msa0842240 MtrunA17_Chr6g0464921 29.560 477 301 14 1 467 1 452 1.24e-52 184
Msa0842240 MtrunA17_Chr6g0464881 29.936 471 285 15 12 467 11 451 1.76e-52 183
Msa0842240 MtrunA17_Chr6g0454171 35.897 273 148 6 205 470 57 309 1.83e-52 179
Msa0842240 MtrunA17_Chr1g0207861 29.814 483 305 13 8 472 4 470 6.87e-52 182
Msa0842240 MtrunA17_Chr5g0429711 30.816 490 279 20 10 473 9 464 8.53e-51 179
Msa0842240 MtrunA17_Chr8g0355011 31.233 365 193 9 115 470 46 361 1.38e-50 176
Msa0842240 MtrunA17_Chr7g0218811 29.087 471 284 14 12 469 15 448 1.67e-50 178
Msa0842240 MtrunA17_Chr8g0377921 28.112 498 279 16 13 470 5 463 3.51e-50 177
Msa0842240 MtrunA17_Chr6g0464861 29.878 492 278 19 1 467 1 450 7.70e-50 176
Msa0842240 MtrunA17_Chr8g0347281 29.142 501 296 18 3 475 9 478 1.82e-49 176
Msa0842240 MtrunA17_Chr7g0218821 28.750 480 289 12 12 471 5 451 4.32e-49 174
Msa0842240 MtrunA17_Chr4g0044511 28.740 508 292 17 3 472 31 506 4.64e-49 175
Msa0842240 MtrunA17_Chr1g0207971 28.067 481 299 11 8 471 4 454 6.23e-49 174
Msa0842240 MtrunA17_Chr8g0365811 28.747 487 307 12 8 472 491 959 1.22e-48 179
Msa0842240 MtrunA17_Chr8g0365811 28.256 453 284 13 12 440 9 444 4.86e-43 163
Msa0842240 MtrunA17_Chr7g0249931 28.131 487 302 16 1 472 29 482 1.62e-48 173
Msa0842240 MtrunA17_Chr4g0044501 30.816 490 288 20 12 472 10 477 1.88e-48 173
Msa0842240 MtrunA17_Chr1g0161351 28.958 480 303 14 12 471 37 498 3.31e-48 173
Msa0842240 MtrunA17_Chr1g0179901 29.719 498 297 18 9 470 13 493 4.28e-48 172
Msa0842240 MtrunA17_Chr3g0098111 28.542 480 307 13 12 472 9 471 1.83e-47 170
Msa0842240 MtrunA17_Chr1g0207951 28.782 476 295 11 12 471 124 571 2.52e-47 176
Msa0842240 MtrunA17_Chr1g0207951 28.423 482 296 14 2 459 641 1097 2.09e-45 170
Msa0842240 MtrunA17_Chr8g0377941 29.424 486 283 15 13 470 8 461 4.63e-47 169
Msa0842240 MtrunA17_Chr7g0265151 31.518 514 258 24 12 470 9 483 7.22e-47 169
Msa0842240 MtrunA17_Chr4g0053501 28.274 481 300 16 7 467 6 461 1.39e-46 168
Msa0842240 MtrunA17_Chr8g0347271 29.563 504 290 22 3 475 10 479 3.63e-46 167
Msa0842240 MtrunA17_Chr7g0265041 28.543 501 293 15 12 470 11 488 4.63e-46 167
Msa0842240 MtrunA17_Chr3g0122001 30.567 494 281 14 12 470 486 952 5.24e-46 171
Msa0842240 MtrunA17_Chr3g0122001 29.461 482 303 10 12 470 6 473 4.20e-45 169
Msa0842240 MtrunA17_Chr4g0053321 28.958 480 298 16 7 467 21 476 8.69e-46 166
Msa0842240 MtrunA17_Chr5g0401851 28.000 500 313 18 2 472 4 485 1.27e-45 166
Msa0842240 MtrunA17_Chr6g0462571 27.521 476 285 16 13 459 5 449 5.25e-45 164
Msa0842240 MtrunA17_Chr7g0265111 30.769 507 301 17 1 473 28 518 1.43e-44 164
Msa0842240 MtrunA17_Chr7g0218791 28.025 471 285 14 12 463 5 440 3.24e-44 161
Msa0842240 MtrunA17_Chr7g0243681 28.235 510 299 19 1 472 1 481 5.66e-44 161
Msa0842240 MtrunA17_Chr5g0419771 30.409 513 283 22 9 475 33 517 9.87e-44 161
Msa0842240 MtrunA17_Chr7g0243631 27.054 499 303 16 12 472 13 488 2.96e-43 159
Msa0842240 MtrunA17_Chr6g0462531 25.873 487 301 13 13 468 5 462 4.69e-43 158
Msa0842240 MtrunA17_Chr5g0429681 30.533 488 280 22 8 467 40 496 1.21e-42 157
Msa0842240 MtrunA17_Chr7g0243931 28.231 503 313 18 1 472 7 492 1.51e-42 157
Msa0842240 MtrunA17_Chr7g0275511 28.195 493 296 18 4 466 7 471 1.78e-42 157
Msa0842240 MtrunA17_Chr5g0431441 26.971 482 295 13 12 470 18 465 2.54e-42 156
Msa0842240 MtrunA17_Chr6g0454371 42.105 171 95 3 303 470 1 170 5.34e-42 147
Msa0842240 MtrunA17_Chr6g0462551 27.801 482 279 18 13 459 5 452 1.29e-41 154
Msa0842240 MtrunA17_Chr7g0243951 28.088 502 314 18 1 472 1 485 1.30e-41 155
Msa0842240 MtrunA17_Chr5g0442601 27.481 524 285 22 5 474 397 879 1.55e-41 158
Msa0842240 MtrunA17_Chr5g0442601 28.660 321 158 13 115 410 62 336 2.95e-26 112
Msa0842240 MtrunA17_Chr8g0382021 28.041 485 283 16 17 470 39 488 2.60e-41 154
Msa0842240 MtrunA17_Chr7g0275681 26.815 496 299 16 12 470 12 480 1.16e-40 152
Msa0842240 MtrunA17_Chr4g0011051 28.257 499 298 17 12 470 9 487 1.83e-40 152
Msa0842240 MtrunA17_Chr5g0448521 27.435 503 281 19 12 470 5 467 2.38e-40 150
Msa0842240 MtrunA17_Chr7g0265141 28.226 496 306 15 7 468 4 483 3.36e-40 150
Msa0842240 MtrunA17_Chr7g0265101 27.789 493 307 20 12 470 9 486 3.99e-40 150
Msa0842240 MtrunA17_Chr1g0207831 26.569 478 310 12 13 471 9 464 6.78e-40 149
Msa0842240 MtrunA17_Chr8g0373301 26.761 497 287 18 8 466 5 462 7.94e-40 149
Msa0842240 MtrunA17_Chr5g0448551 25.837 418 288 8 13 427 8 406 8.30e-40 149
Msa0842240 MtrunA17_Chr1g0159551 27.898 509 270 19 4 470 6 459 1.21e-39 149
Msa0842240 MtrunA17_Chr7g0243871 27.961 515 287 20 1 472 1 474 2.36e-39 148
Msa0842240 MtrunA17_Chr5g0431361 27.992 493 274 20 12 472 12 455 2.91e-39 147
Msa0842240 MtrunA17_Chr8g0335141 29.839 372 221 11 123 472 117 470 4.73e-39 147
Msa0842240 MtrunA17_Chr7g0249961 35.223 247 128 7 242 474 32 260 6.15e-39 142
Msa0842240 MtrunA17_Chr8g0334851 28.486 502 278 22 8 466 2 465 6.37e-39 147
Msa0842240 MtrunA17_Chr8g0369341 27.926 487 306 12 9 471 4 469 1.11e-38 146
Msa0842240 MtrunA17_Chr7g0243781 26.719 509 304 18 1 472 1 477 1.60e-38 146
Msa0842240 MtrunA17_Chr5g0431401 27.708 480 289 12 12 472 10 450 1.62e-38 145
Msa0842240 MtrunA17_Chr6g0462521 25.367 477 302 13 13 468 5 448 1.72e-38 145
Msa0842240 MtrunA17_Chr6g0459311 27.235 481 296 17 13 466 14 467 2.01e-38 145
Msa0842240 MtrunA17_Chr8g0335161 26.611 481 305 17 11 466 5 462 2.75e-38 145
Msa0842240 MtrunA17_Chr4g0060511 26.602 515 288 16 12 472 11 489 2.76e-38 145
Msa0842240 MtrunA17_Chr7g0243771 27.183 504 300 17 8 472 2 477 2.96e-38 145
Msa0842240 MtrunA17_Chr7g0265051 26.815 496 306 19 12 470 9 484 2.98e-38 145
Msa0842240 MtrunA17_Chr5g0442581 32.121 330 159 13 180 470 173 476 3.89e-38 145
Msa0842240 MtrunA17_Chr5g0393591 26.439 469 287 14 12 471 17 436 4.24e-38 144
Msa0842240 MtrunA17_Chr6g0486251 27.572 486 288 18 13 466 7 460 4.75e-38 144
Msa0842240 MtrunA17_Chr6g0486201 27.572 486 288 18 13 466 7 460 4.75e-38 144
Msa0842240 MtrunA17_Chr2g0307961 27.419 496 306 19 1 470 1 468 5.45e-38 144
Msa0842240 MtrunA17_Chr7g0232401 33.922 283 148 9 191 447 182 451 5.56e-38 144
Msa0842240 MtrunA17_Chr3g0106231 27.664 488 284 16 5 470 11 451 6.82e-38 144
Msa0842240 MtrunA17_Chr6g0454231 33.977 259 129 7 218 474 4 222 7.02e-38 144
Msa0842240 MtrunA17_Chr6g0454231 27.350 234 149 7 12 230 250 477 5.51e-14 73.9
Msa0842240 MtrunA17_Chr7g0243801 27.381 504 301 17 7 472 2 478 7.13e-38 144
Msa0842240 MtrunA17_Chr4g0044481 29.384 422 236 13 7 412 22 397 7.64e-38 143
Msa0842240 MtrunA17_Chr5g0442541 25.600 500 294 15 11 470 4 465 8.66e-38 144
Msa0842240 MtrunA17_Chr6g0463891 27.432 514 303 18 1 472 1 486 1.76e-37 143
Msa0842240 MtrunA17_Chr3g0079731 25.444 507 302 14 8 468 2 478 1.85e-37 143
Msa0842240 MtrunA17_Chr5g0431421 28.721 477 288 13 12 472 10 450 2.67e-37 142
Msa0842240 MtrunA17_Chr6g0462541 25.103 486 301 15 13 466 5 459 2.68e-37 142
Msa0842240 MtrunA17_Chr2g0302991 30.645 310 181 8 180 468 164 460 6.85e-37 141
Msa0842240 MtrunA17_Chr5g0419761 27.613 507 289 16 12 470 9 485 8.23e-37 141
Msa0842240 MtrunA17_Chr7g0243861 26.854 499 304 18 12 472 14 489 8.59e-37 141
Msa0842240 MtrunA17_Chr1g0207931 33.460 263 154 6 222 471 244 498 9.31e-37 141
Msa0842240 MtrunA17_Chr4g0014061 31.655 278 163 6 219 474 204 476 9.58e-37 141
Msa0842240 MtrunA17_Chr4g0044521 28.792 389 230 14 106 468 97 464 1.54e-36 140
Msa0842240 MtrunA17_Chr8g0336691 28.426 394 220 14 103 466 1014 1375 4.83e-36 142
Msa0842240 MtrunA17_Chr8g0336691 27.010 485 296 19 12 466 13 469 1.37e-34 138
Msa0842240 MtrunA17_Chr8g0336691 29.003 331 193 9 137 459 605 901 2.98e-31 128
Msa0842240 MtrunA17_Chr5g0442491 25.294 510 300 16 11 474 4 478 6.20e-36 139
Msa0842240 MtrunA17_Chr8g0339601 30.526 285 160 6 201 460 48 319 6.46e-36 135
Msa0842240 MtrunA17_Chr8g0336261 44.526 137 73 2 303 437 1 136 1.23e-35 129
Msa0842240 MtrunA17_Chr6g0449931 25.000 484 277 16 8 447 2 443 1.27e-35 138
Msa0842240 MtrunA17_Chr8g0361371 26.096 502 294 17 7 467 2 467 1.37e-35 137
Msa0842240 MtrunA17_Chr5g0431371 27.651 481 288 15 12 472 10 450 2.22e-35 137
Msa0842240 MtrunA17_Chr5g0442521 25.243 515 295 20 11 474 4 479 2.23e-35 137
Msa0842240 MtrunA17_Chr4g0042891 33.094 278 144 10 220 474 211 469 2.28e-35 137
Msa0842240 MtrunA17_Chr5g0420801 27.812 489 294 17 9 471 4 459 3.42e-35 136
Msa0842240 MtrunA17_Chr4g0066281 32.993 294 153 9 208 471 188 467 3.69e-35 136
Msa0842240 MtrunA17_Chr8g0339461 33.333 279 147 8 214 466 202 467 3.79e-35 136
Msa0842240 MtrunA17_Chr4g0066151 25.294 510 306 17 1 471 7 480 5.74e-35 136
Msa0842240 MtrunA17_Chr4g0042931 26.052 499 295 16 12 474 7 467 6.11e-35 135
Msa0842240 MtrunA17_Chr4g0066221 28.106 491 292 19 17 471 16 481 6.16e-35 136
Msa0842240 MtrunA17_Chr7g0243761 27.406 478 298 16 12 472 11 456 6.45e-35 135
Msa0842240 MtrunA17_Chr6g0463861 32.039 309 162 10 194 468 177 471 6.82e-35 136
Msa0842240 MtrunA17_Chr2g0302961 27.551 392 232 14 103 468 98 463 7.03e-35 135
Msa0842240 MtrunA17_Chr1g0173121 38.647 207 111 4 280 470 256 462 1.10e-34 135
Msa0842240 MtrunA17_Chr8g0334861 29.747 316 173 9 180 467 166 460 1.26e-34 135
Msa0842240 MtrunA17_Chr4g0072771 24.632 475 312 16 12 472 25 467 1.31e-34 135
Msa0842240 MtrunA17_Chr8g0336651 28.947 380 222 15 106 459 875 1232 2.28e-34 137
Msa0842240 MtrunA17_Chr8g0336651 31.250 256 138 6 219 466 545 770 1.34e-30 126
Msa0842240 MtrunA17_Chr8g0336651 27.913 369 223 14 106 453 100 446 3.35e-30 124
Msa0842240 MtrunA17_Chr6g0453941 29.907 321 154 8 12 331 11 261 2.46e-34 130
Msa0842240 MtrunA17_Chr6g0453981 36.408 206 120 4 132 331 8 208 4.20e-34 128
Msa0842240 MtrunA17_Chr4g0066261 27.092 502 284 18 17 471 16 482 8.29e-34 133
Msa0842240 MtrunA17_Chr8g0355221 27.660 376 238 12 119 472 125 488 9.24e-34 133
Msa0842240 MtrunA17_Chr8g0374941 30.195 308 179 9 194 473 1121 1420 1.05e-33 135
Msa0842240 MtrunA17_Chr8g0374941 29.514 288 167 10 194 453 183 462 1.50e-28 120
Msa0842240 MtrunA17_Chr8g0374941 29.795 292 168 9 191 452 642 926 1.88e-27 116
Msa0842240 MtrunA17_Chr4g0066201 31.488 289 150 9 216 471 202 475 1.38e-33 132
Msa0842240 MtrunA17_Chr2g0294921 27.163 497 290 16 17 471 165 631 2.41e-33 133
Msa0842240 MtrunA17_Chr7g0235051 25.866 491 299 15 1 467 1 450 3.04e-33 131
Msa0842240 MtrunA17_Chr8g0336741 29.245 424 255 18 12 415 13 411 3.46e-33 131
Msa0842240 MtrunA17_Chr1g0153451 28.150 373 221 14 117 466 111 459 3.62e-33 130
Msa0842240 MtrunA17_Chr4g0072761 26.685 371 233 11 111 472 114 454 3.68e-33 130
Msa0842240 MtrunA17_Chr7g0243851 25.956 497 290 15 1 472 1 444 4.09e-33 130
Msa0842240 MtrunA17_Chr5g0442561 25.636 511 295 21 11 474 4 476 8.12e-33 130
Msa0842240 MtrunA17_Chr8g0339451 28.032 371 221 11 115 459 102 452 9.21e-33 129
Msa0842240 MtrunA17_Chr8g0334831 26.923 442 248 15 13 415 7 412 1.39e-32 129
Msa0842240 MtrunA17_Chr5g0440421 29.167 504 292 24 12 470 10 493 1.50e-32 129
Msa0842240 MtrunA17_Chr6g0463851 26.990 515 269 19 17 471 16 483 3.09e-32 128
Msa0842240 MtrunA17_Chr7g0232391 26.882 372 226 11 119 466 112 461 3.37e-32 128
Msa0842240 MtrunA17_Chr5g0432731 29.260 311 186 9 171 467 3 293 3.59e-32 124
Msa0842240 MtrunA17_Chr5g0416741 25.247 507 321 18 1 472 2 485 3.80e-32 128
Msa0842240 MtrunA17_Chr5g0403641 31.864 295 148 12 203 463 220 495 7.12e-32 127
Msa0842240 MtrunA17_Chr1g0165701 35.211 213 121 5 277 472 273 485 9.75e-32 127
Msa0842240 MtrunA17_Chr8g0339441 37.129 202 105 6 280 459 217 418 9.82e-32 126
Msa0842240 MtrunA17_Chr8g0339631 31.022 274 151 10 210 459 198 457 1.08e-31 127
Msa0842240 MtrunA17_Chr7g0232411 30.233 301 167 11 191 466 179 461 1.11e-31 126
Msa0842240 MtrunA17_Chr8g0374971 29.808 312 171 9 194 471 184 481 1.49e-31 126
Msa0842240 MtrunA17_Chr7g0243711 35.349 215 120 4 277 472 104 318 1.87e-31 123
Msa0842240 MtrunA17_Chr8g0374901 29.126 309 177 9 194 471 182 479 2.71e-31 125
Msa0842240 MtrunA17_Chr5g0442511 26.166 493 286 18 11 471 48 494 3.76e-31 125
Msa0842240 MtrunA17_Chr8g0336731 30.820 305 173 10 128 415 147 430 5.11e-31 125
Msa0842240 MtrunA17_Chr2g0294931 26.877 506 292 17 13 473 12 484 1.04e-30 124
Msa0842240 MtrunA17_Chr4g0066171 31.541 279 163 7 216 471 204 477 1.52e-30 123
Msa0842240 MtrunA17_Chr4g0066131 27.632 304 166 9 205 471 189 475 2.56e-30 123
Msa0842240 MtrunA17_Chr8g0350881 29.316 307 183 8 194 473 184 483 3.08e-30 122
Msa0842240 MtrunA17_Chr2g0294941 30.218 321 194 9 117 424 17 320 3.58e-30 120
Msa0842240 MtrunA17_Chr7g0232331 25.446 448 282 16 10 431 4 425 7.44e-30 121
Msa0842240 MtrunA17_Chr5g0428081 26.453 499 291 16 16 471 15 480 2.54e-29 120
Msa0842240 MtrunA17_Chr8g0370941 26.914 405 219 17 116 470 111 488 3.63e-29 120
Msa0842240 MtrunA17_Chr7g0232311 27.348 362 215 12 130 467 123 460 4.92e-29 119
Msa0842240 MtrunA17_Chr5g0410941 25.697 502 289 17 16 471 27 490 5.49e-29 119
Msa0842240 MtrunA17_Chr5g0431431 31.855 248 144 8 163 407 99 324 7.26e-29 117
Msa0842240 MtrunA17_Chr8g0374931 29.514 288 158 8 217 471 207 482 8.96e-29 118
Msa0842240 MtrunA17_Chr7g0218311 30.903 288 153 10 217 471 210 484 9.04e-29 118
Msa0842240 MtrunA17_Chr7g0232341 30.597 268 144 10 212 452 198 450 1.84e-28 117
Msa0842240 MtrunA17_Chr1g0153461 33.981 206 117 3 280 466 3 208 2.39e-28 112
Msa0842240 MtrunA17_Chr3g0106251 29.930 284 171 6 201 473 30 296 3.28e-28 114
Msa0842240 MtrunA17_Chr7g0243611 30.272 294 164 10 130 412 8 271 4.87e-28 113
Msa0842240 MtrunA17_Chr8g0357361 44.203 138 75 2 280 416 117 253 6.73e-28 112
Msa0842240 MtrunA17_Chr6g0482061 27.425 299 180 9 180 458 186 467 1.14e-27 115
Msa0842240 MtrunA17_Chr7g0243911 34.783 207 114 5 274 465 15 215 2.49e-27 109
Msa0842240 MtrunA17_Chr5g0416821 25.000 492 330 19 1 472 3 475 2.52e-27 114
Msa0842240 MtrunA17_Chr2g0329111 27.166 427 247 16 13 406 7 402 2.71e-27 114
Msa0842240 MtrunA17_Chr5g0409591 30.403 273 163 9 221 468 212 482 2.73e-26 111
Msa0842240 MtrunA17_Chr7g0241781 26.226 469 267 20 1 450 1 409 6.21e-26 109
Msa0842240 MtrunA17_Chr8g0367221 26.279 430 261 14 1 406 1 398 8.20e-26 111
Msa0842240 MtrunA17_Chr8g0367221 39.062 128 74 2 283 406 1548 1675 5.39e-22 100
Msa0842240 MtrunA17_Chr8g0367221 38.000 150 87 4 283 427 1058 1206 4.34e-21 97.1
Msa0842240 MtrunA17_Chr7g0243811 30.544 239 145 6 179 410 149 373 8.84e-26 108
Msa0842240 MtrunA17_Chr7g0241801 26.778 478 255 19 1 462 1 399 1.85e-25 108
Msa0842240 MtrunA17_Chr8g0361411 25.508 443 272 15 1 424 1 404 2.39e-24 105
Msa0842240 MtrunA17_Chr6g0454111 36.111 144 88 2 180 323 44 183 2.61e-22 94.4
Msa0842240 MtrunA17_Chr8g0337381 40.000 130 71 3 350 474 2 129 4.57e-22 92.0
Msa0842240 MtrunA17_Chr7g0231631 30.739 257 165 7 223 472 11 261 9.67e-22 94.7
Msa0842240 MtrunA17_Chr1g0207881 33.987 153 94 1 326 471 233 385 2.22e-21 95.9
Msa0842240 MtrunA17_Chr7g0232351 30.698 215 118 8 191 389 179 378 2.25e-21 95.5
Msa0842240 MtrunA17_Chr8g0336251 23.267 404 284 11 12 404 7 395 1.06e-20 94.7
Msa0842240 MtrunA17_Chr8g0336321 23.267 404 284 11 12 404 7 395 1.57e-20 94.0
Msa0842240 MtrunA17_Chr5g0427571 36.800 125 76 2 283 404 105 229 3.15e-20 91.3
Msa0842240 MtrunA17_Chr4g0066141 36.076 158 84 4 332 472 196 353 5.69e-20 91.3
Msa0842240 MtrunA17_Chr1g0196851 25.783 415 267 17 12 414 49 434 6.41e-20 92.4
Msa0842240 MtrunA17_Chr3g0079711 32.065 184 103 5 307 468 3 186 8.48e-20 87.0
Msa0842240 MtrunA17_Chr5g0426411 33.918 171 103 4 6 169 6 173 2.00e-19 85.5
Msa0842240 MtrunA17_Chr3g0092031 35.714 126 79 2 282 406 5 129 1.14e-18 84.3
Msa0842240 MtrunA17_Chr4g0029151 24.512 461 269 16 9 437 17 430 1.25e-18 88.2
Msa0842240 MtrunA17_Chr7g0250021 25.915 355 226 12 1 346 1 327 2.32e-18 85.9
Msa0842240 MtrunA17_Chr6g0466831 23.333 420 275 12 2 406 8 395 2.92e-18 87.0
Msa0842240 MtrunA17_Chr2g0278721 24.235 425 286 15 6 414 511 915 5.57e-18 87.4
Msa0842240 MtrunA17_Chr2g0278721 34.127 126 81 2 282 406 273 397 1.57e-14 76.3
Msa0842240 MtrunA17_Chr2g0283041 24.379 443 287 15 12 436 7 419 1.32e-17 85.1
Msa0842240 MtrunA17_Chr4g0069611 24.574 411 261 17 12 406 15 392 1.63e-17 84.7
Msa0842240 MtrunA17_Chr4g0040711 24.889 450 282 17 9 437 5 419 2.32e-17 84.3
Msa0842240 MtrunA17_Chr6g0464091 24.697 413 265 15 12 406 18 402 5.15e-17 83.6
Msa0842240 MtrunA17_Chr4g0040691 24.565 460 296 15 9 448 5 433 1.41e-16 82.0
Msa0842240 MtrunA17_Chr4g0029131 24.670 454 277 18 9 437 9 422 2.64e-16 81.6
Msa0842240 MtrunA17_Chr2g0302851 23.301 412 265 14 12 406 16 393 2.95e-16 80.9
Msa0842240 MtrunA17_Chr6g0466841 22.128 470 312 15 2 450 8 444 4.77e-16 80.5
Msa0842240 MtrunA17_Chr8g0336271 24.812 266 163 9 11 250 9 263 8.43e-16 77.8
Msa0842240 MtrunA17_Chr2g0278741 22.014 427 257 14 12 406 97 479 1.82e-15 79.0
Msa0842240 MtrunA17_Chr4g0039881 22.716 405 256 13 22 406 2 369 3.39e-15 77.4
Msa0842240 MtrunA17_Chr8g0334841 32.895 152 82 5 180 328 1 135 8.16e-15 72.4
Msa0842240 MtrunA17_Chr6g0454381 32.593 135 79 5 132 258 8 138 3.13e-14 69.7
Msa0842240 MtrunA17_Chr5g0442501 24.556 338 196 12 11 327 4 303 7.26e-14 72.4
Msa0842240 MtrunA17_Chr5g0427561 34.524 84 54 1 388 470 1 84 2.35e-13 65.9
Msa0842240 MtrunA17_Chr6g0454281 27.103 214 118 8 12 198 10 212 3.75e-13 68.6
Msa0842240 MtrunA17_Chr6g0454391 42.857 63 36 0 366 428 13 75 4.83e-13 65.9
Msa0842240 MtrunA17_Chr7g0243731 42.857 70 40 0 345 414 4 73 9.75e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842240 AT1G22380.1 35.849 477 279 12 12 470 13 480 3.80e-94 293
Msa0842240 AT1G22400.1 34.029 479 280 10 12 467 13 478 1.10e-90 285
Msa0842240 AT1G22360.1 34.511 481 280 10 12 470 10 477 8.73e-89 280
Msa0842240 AT1G22370.2 34.937 478 277 10 12 470 13 475 1.82e-87 276
Msa0842240 AT1G22360.2 34.304 481 269 11 12 470 10 465 2.40e-85 270
Msa0842240 AT1G22340.1 34.161 483 280 13 12 470 13 481 1.18e-82 264
Msa0842240 AT1G78270.1 34.737 475 287 12 12 470 13 480 4.12e-79 254
Msa0842240 AT3G11340.1 33.820 479 277 13 1 472 1 446 5.36e-78 250
Msa0842240 AT5G05900.1 34.583 480 253 15 12 470 8 447 1.35e-72 236
Msa0842240 AT5G05880.1 33.951 486 264 15 7 472 2 450 4.98e-69 227
Msa0842240 AT3G55710.1 31.263 483 288 14 6 472 2 456 9.39e-66 219
Msa0842240 AT3G46660.1 33.333 486 276 14 1 472 6 457 2.63e-64 215
Msa0842240 AT3G55700.1 30.658 486 283 14 6 472 2 452 2.64e-64 215
Msa0842240 AT5G05860.1 33.471 484 264 13 6 470 3 447 7.42e-64 214
Msa0842240 AT3G46670.1 32.091 483 284 15 1 472 1 450 9.69e-64 213
Msa0842240 AT4G15480.1 29.436 479 307 10 12 474 19 482 5.32e-62 210
Msa0842240 AT5G05870.1 30.879 489 278 15 6 470 2 454 7.55e-61 206
Msa0842240 AT5G05890.1 31.098 492 274 15 7 472 2 454 3.64e-60 204
Msa0842240 AT5G38010.1 32.008 478 284 14 6 470 4 453 2.09e-59 202
Msa0842240 AT3G21560.1 29.388 490 304 13 1 468 1 470 2.87e-59 202
Msa0842240 AT1G22370.1 36.964 303 182 6 173 470 7 305 5.58e-59 197
Msa0842240 AT3G02100.1 30.515 485 293 13 6 474 7 463 6.90e-59 201
Msa0842240 AT5G59590.1 30.063 479 282 16 6 467 4 446 1.18e-58 200
Msa0842240 AT3G46690.1 31.707 492 268 17 6 472 3 451 1.27e-57 197
Msa0842240 AT3G46680.1 29.938 481 287 15 6 470 3 449 1.77e-57 197
Msa0842240 AT3G46650.1 29.792 480 275 14 4 470 2 432 1.46e-56 194
Msa0842240 AT5G38040.1 31.749 463 273 15 20 470 18 449 4.85e-56 193
Msa0842240 AT2G43840.2 30.480 479 286 16 7 471 2 447 1.42e-55 192
Msa0842240 AT3G46720.1 30.146 481 281 15 6 472 3 442 1.94e-55 191
Msa0842240 AT5G59580.1 30.316 475 281 16 12 471 9 448 1.96e-55 191
Msa0842240 AT2G43840.1 30.290 482 283 17 7 471 2 447 7.54e-55 190
Msa0842240 AT3G46700.1 30.021 483 283 16 6 472 3 446 9.96e-55 189
Msa0842240 AT2G43820.1 30.353 481 286 15 7 472 2 448 1.04e-54 189
Msa0842240 AT2G31750.1 30.380 474 298 14 7 470 3 454 2.11e-54 189
Msa0842240 AT2G31750.2 30.335 478 301 14 7 474 3 458 3.01e-54 189
Msa0842240 AT4G15490.1 29.079 478 297 14 11 467 7 463 9.93e-54 187
Msa0842240 AT2G31790.1 29.289 478 294 15 7 467 3 453 2.90e-53 186
Msa0842240 AT2G26480.1 30.297 472 290 14 12 474 8 449 5.16e-53 185
Msa0842240 AT4G15500.1 28.512 477 304 10 7 467 4 459 1.80e-52 184
Msa0842240 AT2G28080.1 29.451 455 287 16 17 454 23 460 1.88e-51 181
Msa0842240 AT1G05675.1 29.691 485 279 14 8 467 2 449 5.48e-51 179
Msa0842240 AT2G36970.1 29.218 486 300 16 12 474 10 474 4.63e-50 178
Msa0842240 AT5G17050.1 29.303 488 300 18 3 474 2 460 3.41e-48 172
Msa0842240 AT1G05680.1 29.796 490 272 16 8 467 2 449 5.98e-48 171
Msa0842240 AT4G34138.1 29.058 499 275 14 5 459 4 467 1.51e-47 171
Msa0842240 AT4G15550.1 27.381 504 278 18 9 467 10 470 8.65e-47 169
Msa0842240 AT2G23260.1 29.202 476 298 18 7 470 5 453 1.44e-46 168
Msa0842240 AT5G17040.1 27.406 478 291 18 9 470 2 439 1.16e-45 165
Msa0842240 AT2G15490.3 29.774 487 294 16 12 468 7 475 2.23e-45 165
Msa0842240 AT2G23250.1 30.172 464 281 18 21 473 7 438 2.63e-45 164
Msa0842240 AT2G29710.1 27.126 494 299 16 10 473 3 465 3.20e-45 164
Msa0842240 AT2G15480.1 28.484 488 299 17 12 468 10 478 4.38e-45 164
Msa0842240 AT1G30530.1 28.512 484 292 16 3 470 5 450 7.12e-45 163
Msa0842240 AT2G15490.1 29.735 491 292 17 12 468 7 478 8.23e-45 164
Msa0842240 AT1G05560.2 28.884 502 279 19 2 470 45 501 2.42e-44 163
Msa0842240 AT2G15480.2 27.912 498 299 17 12 468 10 488 2.75e-44 162
Msa0842240 AT2G36760.1 28.827 503 294 17 12 472 14 494 4.82e-44 162
Msa0842240 AT1G05560.1 29.065 492 271 19 12 470 5 451 6.69e-44 161
Msa0842240 AT5G17030.1 29.659 381 230 10 105 470 98 455 3.09e-43 159
Msa0842240 AT3G16520.3 31.720 372 209 14 115 468 113 457 3.32e-43 159
Msa0842240 AT1G01420.1 28.330 473 286 16 7 453 3 448 4.35e-43 159
Msa0842240 AT1G01420.2 28.330 473 286 16 7 453 6 451 4.96e-43 159
Msa0842240 AT2G29730.1 26.860 484 294 19 14 467 6 459 7.38e-43 158
Msa0842240 AT5G17040.2 30.719 306 190 9 170 470 49 337 7.44e-43 155
Msa0842240 AT1G05530.1 28.685 502 263 20 12 470 5 454 1.23e-42 157
Msa0842240 AT4G34131.1 27.219 507 308 20 1 472 1 481 1.35e-42 157
Msa0842240 AT3G16520.2 31.728 353 196 13 115 446 113 441 2.77e-42 156
Msa0842240 AT3G16520.1 31.728 353 196 13 115 446 113 441 3.39e-42 156
Msa0842240 AT1G24100.1 28.854 506 273 20 2 470 3 458 3.41e-42 156
Msa0842240 AT2G36770.1 28.343 501 299 18 12 472 14 494 1.78e-41 155
Msa0842240 AT4G01070.1 26.638 473 291 15 6 450 2 446 6.72e-41 153
Msa0842240 AT2G36750.1 28.205 507 283 20 12 470 10 483 6.94e-41 153
Msa0842240 AT5G26310.1 28.486 502 267 23 9 463 4 460 7.86e-41 152
Msa0842240 AT2G36780.1 27.821 514 281 18 10 470 12 488 2.21e-40 152
Msa0842240 AT4G34135.1 28.283 495 299 15 12 472 11 483 4.66e-40 150
Msa0842240 AT5G66690.1 28.657 499 270 22 9 463 4 460 1.16e-39 149
Msa0842240 AT2G36800.1 26.136 528 291 19 1 470 1 487 9.72e-39 147
Msa0842240 AT4G14090.1 28.807 486 270 18 12 467 13 452 2.86e-38 145
Msa0842240 AT2G36790.1 27.059 510 296 20 12 473 13 494 4.50e-38 145
Msa0842240 AT3G53160.1 33.813 278 144 8 221 470 217 482 9.02e-38 144
Msa0842240 AT1G73880.1 26.735 490 305 18 7 472 9 468 3.33e-37 142
Msa0842240 AT1G01390.1 27.765 425 253 12 7 406 3 398 9.76e-37 141
Msa0842240 AT1G01390.2 27.765 425 253 12 7 406 20 415 1.33e-36 141
Msa0842240 AT3G22250.1 24.943 441 292 12 13 435 9 428 3.94e-36 139
Msa0842240 AT3G21790.1 25.447 503 311 15 12 474 4 482 8.06e-36 139
Msa0842240 AT1G07250.1 25.820 488 292 19 11 459 5 461 1.79e-35 138
Msa0842240 AT4G36770.1 26.971 482 275 18 12 454 4 447 3.82e-35 136
Msa0842240 AT5G03490.1 27.071 495 288 17 3 468 10 460 5.99e-35 136
Msa0842240 AT2G30140.2 26.078 487 289 18 12 473 13 453 1.63e-34 135
Msa0842240 AT3G50740.1 26.550 516 265 21 9 463 4 466 2.19e-34 135
Msa0842240 AT2G30140.1 25.873 487 291 18 12 473 13 454 4.53e-34 133
Msa0842240 AT1G07240.1 30.990 313 180 12 166 459 169 464 2.61e-33 132
Msa0842240 AT1G07260.1 30.667 300 169 10 180 460 182 461 1.07e-32 130
Msa0842240 AT3G53150.1 27.579 504 304 20 12 470 22 509 1.11e-32 130
Msa0842240 AT2G29740.1 26.113 494 293 18 7 460 3 464 1.25e-32 130
Msa0842240 AT2G29750.1 25.102 490 302 16 7 460 3 463 1.49e-32 129
Msa0842240 AT5G14860.1 26.052 499 304 22 9 470 5 475 3.54e-32 129
Msa0842240 AT3G21760.1 27.812 320 195 7 114 416 115 415 1.70e-31 127
Msa0842240 AT2G18570.1 29.927 274 144 11 219 463 205 459 3.31e-31 125
Msa0842240 AT3G21750.1 25.347 505 301 15 12 475 4 473 5.95e-31 125
Msa0842240 AT2G30150.2 25.304 494 304 15 4 474 5 456 1.16e-30 124
Msa0842240 AT4G15260.1 29.496 278 157 7 218 470 91 354 2.91e-30 121
Msa0842240 AT5G37950.2 33.684 285 153 11 113 389 81 337 1.43e-29 119
Msa0842240 AT2G18560.1 30.515 272 145 10 219 463 115 369 5.36e-29 118
Msa0842240 AT4G15280.1 28.777 278 160 6 218 470 209 473 7.04e-29 119
Msa0842240 AT4G15280.2 28.777 278 160 6 218 470 241 505 1.01e-28 119
Msa0842240 AT2G30150.1 25.364 481 294 15 17 474 2 440 1.05e-28 118
Msa0842240 AT1G51210.1 24.390 451 288 17 12 446 20 433 1.18e-28 118
Msa0842240 AT5G37950.1 33.566 286 158 12 113 389 81 343 1.29e-28 116
Msa0842240 AT3G21780.1 24.186 430 269 13 12 415 4 402 2.40e-28 117
Msa0842240 AT3G21800.1 24.248 499 313 18 13 470 5 479 4.76e-28 117
Msa0842240 AT1G10400.1 25.447 503 278 22 12 467 7 459 5.04e-28 116
Msa0842240 AT2G16890.2 23.140 484 322 16 12 470 9 467 7.42e-27 113
Msa0842240 AT1G06000.1 28.676 272 161 8 216 467 172 430 1.44e-26 112
Msa0842240 AT5G49690.1 26.392 413 258 13 6 404 4 384 3.71e-26 111
Msa0842240 AT2G16890.3 24.048 420 278 13 12 415 9 403 2.95e-25 108
Msa0842240 AT5G12890.1 35.233 193 102 7 220 401 224 404 5.68e-23 102
Msa0842240 AT5G54010.1 24.524 420 267 13 9 415 3 385 1.76e-20 94.4
Msa0842240 AT4G27570.1 23.923 418 263 15 12 414 7 384 3.57e-19 90.1
Msa0842240 AT5G65550.1 36.842 133 81 3 283 414 270 400 1.17e-18 89.0
Msa0842240 AT4G27560.1 23.445 418 265 15 12 414 7 384 3.67e-18 87.0
Msa0842240 AT2G22590.1 24.029 412 271 13 12 406 15 401 1.41e-17 85.5
Msa0842240 AT4G01070.2 24.024 333 215 11 6 328 2 306 1.90e-17 84.0
Msa0842240 AT5G53990.1 24.301 465 286 18 12 456 6 424 1.53e-14 75.9
Msa0842240 AT3G29630.1 23.404 470 293 16 9 456 3 427 1.74e-13 72.8
Msa0842240 AT4G34135.2 24.779 339 209 13 12 327 11 326 5.35e-13 70.5
Msa0842240 AT4G09500.2 23.542 463 292 19 12 456 6 424 2.40e-12 69.3
Msa0842240 AT1G64910.1 22.619 420 263 16 12 415 6 379 2.53e-12 69.3
Msa0842240 AT5G54060.1 24.053 449 295 16 7 436 8 429 4.56e-12 68.6

Find 172 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAAGTTGCATTATTT+TGG 0.129986 5_4:-19232336 Msa0842240:CDS
CTATTAGTTCTTGTTGCTTT+TGG 0.138157 5_4:-19232244 Msa0842240:CDS
AACTTGCGCAAGGGTATATT+TGG 0.183036 5_4:+19229173 None:intergenic
AAGTATAAGTGTAGGCATTT+TGG 0.220612 5_4:-19228209 Msa0842240:three_prime_UTR
GTCTACTATCCCGTAAAATA+AGG 0.228152 5_4:-19229579 Msa0842240:exon
ATGTGATGTTTATACTATTT+AGG 0.263305 5_4:-19229392 Msa0842240:three_prime_UTR
ACTGATTTGGCTGCTGAGTT+TGG 0.266869 5_4:-19232290 Msa0842240:CDS
GGATATATATATACCTCTAA+TGG 0.273189 5_4:+19232178 None:intergenic
GGGCCTATGGTGTAGAGTTT+AGG 0.277656 5_4:+19230265 None:intergenic
GTTGCATCTCTTGGTCAAAT+TGG 0.283170 5_4:-19229367 Msa0842240:three_prime_UTR
AAGATTTAATTCAATATATA+AGG 0.286593 5_4:-19229601 Msa0842240:CDS
ATTTGTTGATCAGCAAAATA+AGG 0.287071 5_4:+19229818 None:intergenic
GTGAGTGAGGTTTGGAAACT+TGG 0.292117 5_4:-19229782 Msa0842240:CDS
ATTATTTCTTCTCTCTTCAT+TGG 0.297807 5_4:+19230088 None:intergenic
TACATATGCAAGAAAGTTAT+AGG 0.301470 5_4:-19232722 Msa0842240:five_prime_UTR
GAAGAGAAGCATCCTGGATT+TGG 0.314492 5_4:-19232434 Msa0842240:CDS
TCAAACATGGTACAAGAAAA+AGG 0.314881 5_4:-19230010 Msa0842240:CDS
GGCCTATGGTGTAGAGTTTA+GGG 0.331169 5_4:+19230266 None:intergenic
CTGATTTGGCTGCTGAGTTT+GGG 0.334780 5_4:-19232289 Msa0842240:CDS
GAGAAGAAATAATTGAGATT+TGG 0.335214 5_4:-19230078 Msa0842240:CDS
AAGAAGTTGGTAAGACAAAA+TGG 0.336575 5_4:-19227892 Msa0842240:three_prime_UTR
CTGATCAACAAATAAATAGT+AGG 0.353536 5_4:-19229808 Msa0842240:CDS
ATTGTTCAACCCTCGAATTT+TGG 0.354954 5_4:+19229466 None:intergenic
TGTAAAATCAGCCATGGATA+TGG 0.357578 5_4:-19229678 Msa0842240:CDS
ACATCTTTATTCAAAGCTTA+AGG 0.360862 5_4:+19229411 None:intergenic
TGGTGACCTTGCTACTGATT+TGG 0.367535 5_4:-19232303 Msa0842240:CDS
TAAATCTTGGAAGTTGTTGT+AGG 0.370730 5_4:+19229616 None:intergenic
TTATATATTGAATTAAATCT+TGG 0.370783 5_4:+19229603 None:intergenic
CTTCGTGAAATCAAAGTTGT+TGG 0.372610 5_4:-19228032 Msa0842240:three_prime_UTR
GTGGAGTTATATATGTATTA+AGG 0.372662 5_4:+19232758 None:intergenic
TCGGTTATATATGTTAGTTT+TGG 0.373327 5_4:-19230121 Msa0842240:CDS
GTGGTGTGCCTATGATTTGT+TGG 0.376618 5_4:-19229841 Msa0842240:CDS
TGTGGGGTATGAGAATCTTC+TGG 0.379392 5_4:+19228421 None:intergenic
ATTTGCTTTAAGTGATTGTT+TGG 0.382144 5_4:+19230354 None:intergenic
ATTTAGGTGGTTGCATCTCT+TGG 0.384556 5_4:-19229376 Msa0842240:three_prime_UTR
TCATTGCACTCCAAGAGGTT+TGG 0.384631 5_4:+19232206 None:intergenic
GCGCAGAAATAGAACAAATC+TGG 0.385512 5_4:-19228326 Msa0842240:three_prime_UTR
AACTTCTTCGTTACGAAGAA+TGG 0.388157 5_4:+19227907 None:intergenic
CAACCTCGTCTATACGGATA+TGG 0.388459 5_4:+19230386 None:intergenic
CACGAAGAATGGCGTCGATC+AGG 0.389497 5_4:+19227983 None:intergenic
GGTATATTTGGAACGGCTGC+AGG 0.402358 5_4:+19229185 None:intergenic
TTCCCTCGTGTCAACCGTTT+AGG 0.403506 5_4:+19228834 None:intergenic
TGGTGTTTGTAACTCAATAT+AGG 0.403559 5_4:-19228177 Msa0842240:three_prime_UTR
CGAAGTAAGTTTGCCATACC+TGG 0.411259 5_4:+19230451 None:intergenic
TTTCTGTGTTCCAAACCTCT+TGG 0.411613 5_4:-19232216 Msa0842240:CDS
ATAGTCTTGAATTGAAGCTT+AGG 0.412111 5_4:+19232473 None:intergenic
TAGGAAAGTTGTGGAGAATA+TGG 0.412889 5_4:-19229735 Msa0842240:CDS
GAAGTACAACCTCGTCTATA+CGG 0.414116 5_4:+19230380 None:intergenic
CCCCACAGTTATTGTACCTT+GGG 0.414340 5_4:-19228405 Msa0842240:three_prime_UTR
CACGATGAGTGGTGTCGATC+GGG 0.419086 5_4:+19228114 None:intergenic
TGCAATGAACTTCCCATTAG+AGG 0.423671 5_4:-19232191 Msa0842240:intron
GTAGGTTTGTGAGTGAGGTT+TGG 0.428038 5_4:-19229790 Msa0842240:CDS
TCTTTCGATTTCACGAAGAA+TGG 0.438499 5_4:+19227972 None:intergenic
TGCAATGCATTATGCCTAAA+CGG 0.440515 5_4:-19228848 Msa0842240:three_prime_UTR
ACCACCAGGACTCACACTCT+TGG 0.441655 5_4:+19229643 None:intergenic
CATAGTGAAGAGAAGCATCC+TGG 0.445229 5_4:-19232440 Msa0842240:CDS
GATATATATATACCTCTAAT+GGG 0.445458 5_4:+19232179 None:intergenic
TGACTCTCAACCATTGAAAT+CGG 0.446084 5_4:-19230140 Msa0842240:CDS
GAGTCGGTTATGAATGTATT+CGG 0.451281 5_4:+19232538 None:intergenic
TTGAACAATACATATAAATA+CGG 0.456552 5_4:-19229452 Msa0842240:three_prime_UTR
TCTACTATCCCGTAAAATAA+GGG 0.457384 5_4:-19229578 Msa0842240:exon
GAAGCATATATCAGAAGATA+AGG 0.458304 5_4:-19228694 Msa0842240:three_prime_UTR
CGCATCATAACAAACATTCC+AGG 0.459966 5_4:-19230469 Msa0842240:CDS
TAATGGGTGGAATTCAACTT+TGG 0.460954 5_4:-19229876 Msa0842240:CDS
AAATAGTAGGTTTGTGAGTG+AGG 0.465097 5_4:-19229795 Msa0842240:CDS
TCATCAACTAAACTCGATCT+AGG 0.466081 5_4:+19227849 None:intergenic
GAATATGGTGAATGATGTTA+TGG 0.469748 5_4:-19229720 Msa0842240:CDS
TGAATGATGTTATGGTGAAT+AGG 0.471178 5_4:-19229712 Msa0842240:CDS
AAGGGTAAAGGGTTGATTGT+TGG 0.471609 5_4:-19229956 Msa0842240:CDS
AGCATCCTGGATTTGGAGAA+AGG 0.475413 5_4:-19232427 Msa0842240:CDS
AAATAAGGCCAACAAATCAT+AGG 0.477093 5_4:+19229833 None:intergenic
ACTATTCTGAAGCACGTAGT+TGG 0.479227 5_4:-19229319 Msa0842240:three_prime_UTR
AGGGGATAAGCTGAGATTCA+TGG 0.479408 5_4:-19227936 Msa0842240:three_prime_UTR
AAGTTGTTGGTTAGACTAAG+AGG 0.480307 5_4:-19228019 Msa0842240:three_prime_UTR
GAAACTTGGGTTGGATATGA+AGG 0.480309 5_4:-19229768 Msa0842240:CDS
GAAAGAGTTGGTAACACAAA+GGG 0.482676 5_4:-19227955 Msa0842240:three_prime_UTR
GCTTTAGCATTGAATTTACA+TGG 0.483622 5_4:+19232609 None:intergenic
TGAACAATACATATAAATAC+GGG 0.486891 5_4:-19229451 Msa0842240:three_prime_UTR
GTGACAAAACTTCCTCTTGT+GGG 0.488001 5_4:+19229927 None:intergenic
GAATTTACATGGCCTTGTGC+TGG 0.491907 5_4:+19232620 None:intergenic
TAAGAGCAATTTATTCAAAG+TGG 0.492289 5_4:-19230185 Msa0842240:CDS
AGCCATGGATATGGCTAAGT+TGG 0.496465 5_4:-19229669 Msa0842240:CDS
CATCGTGAAATTGAAAGAGT+TGG 0.498732 5_4:-19228098 Msa0842240:three_prime_UTR
TGAGTGAGGTTTGGAAACTT+GGG 0.500077 5_4:-19229781 Msa0842240:CDS
ACTCATACTCAACACATTTG+AGG 0.503493 5_4:-19230329 Msa0842240:CDS
ACATATATAACCGATTTCAA+TGG 0.506428 5_4:+19230130 None:intergenic
ATTGTGTCACTGAGTTTGTA+TGG 0.506708 5_4:-19232392 Msa0842240:CDS
AGGATTATTAAGTGAGCTTG+AGG 0.508071 5_4:-19229990 Msa0842240:CDS
CCTATCCTTTCTCCAAATCC+AGG 0.509024 5_4:+19232422 None:intergenic
ACCCCACAGTTATTGTACCT+TGG 0.509387 5_4:-19228406 Msa0842240:three_prime_UTR
CATAACAAACATTCCAGGTA+TGG 0.511487 5_4:-19230464 Msa0842240:CDS
TAGTCTTGAATTGAAGCTTA+GGG 0.511757 5_4:+19232474 None:intergenic
CACATTGAACCAAAATTCGA+GGG 0.513459 5_4:-19229475 Msa0842240:three_prime_UTR
GAAATAATTGAGATTTGGCA+TGG 0.518839 5_4:-19230073 Msa0842240:CDS
ATATGAAGGATGTTTGTGAT+AGG 0.519622 5_4:-19229754 Msa0842240:CDS
AAGGAACTAGCAAGGGTAAA+GGG 0.521603 5_4:-19229967 Msa0842240:CDS
TTACAACATGCAATGCCACT+TGG 0.521702 5_4:+19228759 None:intergenic
TCTTTCAATTTCACGATGAG+TGG 0.527560 5_4:+19228103 None:intergenic
GGAGTTAAAAGTATAAGTGT+AGG 0.529189 5_4:-19228217 Msa0842240:three_prime_UTR
AGAGTCAAGCCACGCCATGC+AGG 0.530095 5_4:+19230156 None:intergenic
TCACATTGAACCAAAATTCG+AGG 0.533533 5_4:-19229476 Msa0842240:three_prime_UTR
ACATGGCCTTGTGCTGGACA+TGG 0.534043 5_4:+19232626 None:intergenic
GAAGGAACTAGCAAGGGTAA+AGG 0.536464 5_4:-19229968 Msa0842240:CDS
TAAAGGGTTGATTGTTGGAT+GGG 0.536534 5_4:-19229951 Msa0842240:CDS
CTTCGTGAAATCGAAAGAGT+TGG 0.537399 5_4:-19227967 Msa0842240:three_prime_UTR
TGAGGTTTGGAAACTTGGGT+TGG 0.537607 5_4:-19229777 Msa0842240:CDS
ATCTTGGAAGTTGTTGTAGG+AGG 0.539036 5_4:+19229619 None:intergenic
TATATGCTTCAGCTGCCGCT+TGG 0.542413 5_4:+19228707 None:intergenic
TCACGATGAGTGGTGTCGAT+CGG 0.544045 5_4:+19228113 None:intergenic
GTGGTGATGAAGAGGGCCTA+TGG 0.544580 5_4:+19230252 None:intergenic
ATTCTTCGTAACGAAGAAGT+TGG 0.546872 5_4:-19227905 Msa0842240:three_prime_UTR
GCATCCAAGAGTGTGAGTCC+TGG 0.552305 5_4:-19229647 Msa0842240:CDS
ACTTTGGAAAGTGTGGTTTG+TGG 0.554343 5_4:-19229860 Msa0842240:CDS
AAGCATATATCAGAAGATAA+GGG 0.557340 5_4:-19228693 Msa0842240:three_prime_UTR
AGGGCGCAAGCAAAATGTGC+AGG 0.557752 5_4:+19229205 None:intergenic
GAATTCAACTTTGGAAAGTG+TGG 0.562112 5_4:-19229867 Msa0842240:CDS
GTAAAGGGTTGATTGTTGGA+TGG 0.572022 5_4:-19229952 Msa0842240:CDS
TATGAATGTATTCGGTGTTG+AGG 0.573279 5_4:+19232546 None:intergenic
TCGAATGTATATTTCTAACA+TGG 0.573595 5_4:-19229273 Msa0842240:three_prime_UTR
TGCGTTAGTTAACTTGCGCA+AGG 0.574544 5_4:+19229163 None:intergenic
TTATTAAGTGAGCTTGAGGA+AGG 0.576667 5_4:-19229986 Msa0842240:CDS
CATCGTTGAATTGAATGAGT+CGG 0.580012 5_4:+19232522 None:intergenic
CAACTAAACTCGATCTAGGA+AGG 0.581159 5_4:+19227853 None:intergenic
TGTGACAAAACTTCCTCTTG+TGG 0.583263 5_4:+19229926 None:intergenic
AGTAGTAATTTCTTTCCAAG+TGG 0.585014 5_4:-19228774 Msa0842240:three_prime_UTR
TCCAAGAGTGTGAGTCCTGG+TGG 0.586272 5_4:-19229644 Msa0842240:CDS
CACGTGAGTTAACTCACGCT+GGG 0.586735 5_4:-19229042 Msa0842240:three_prime_UTR
CATGGCCTTGTGCTGGACAT+GGG 0.589394 5_4:+19232627 None:intergenic
GGGTCAAAATTGTAGGCCCA+AGG 0.592306 5_4:+19228389 None:intergenic
GCCCAAGGTACAATAACTGT+GGG 0.593061 5_4:+19228404 None:intergenic
CCTGGATTTGGAGAAAGGAT+AGG 0.594736 5_4:-19232422 Msa0842240:CDS
TGTTGGATGGGTCCCACAAG+AGG 0.597020 5_4:-19229939 Msa0842240:CDS
CGAAAGAGTTGGTAACACAA+AGG 0.599412 5_4:-19227956 Msa0842240:three_prime_UTR
CCAGCGTGAGTTAACTCACG+TGG 0.604036 5_4:+19229043 None:intergenic
ATCTTCCCATGTCCAGCACA+AGG 0.604045 5_4:-19232632 Msa0842240:CDS
GCGCAAGGGTATATTTGGAA+CGG 0.604585 5_4:+19229178 None:intergenic
TGCCAACTTAGCCATATCCA+TGG 0.606456 5_4:+19229667 None:intergenic
GCGTTAGTTAACTTGCGCAA+GGG 0.607499 5_4:+19229164 None:intergenic
ATGGGTGATTAGGTCAAACA+TGG 0.609105 5_4:-19230023 Msa0842240:CDS
TTCCCTAAACTCTACACCAT+AGG 0.611308 5_4:-19230268 Msa0842240:CDS
GGAGTTTGTAAAATCAGCCA+TGG 0.612612 5_4:-19229684 Msa0842240:CDS
TGGATAGAACCTGCATGGCG+TGG 0.616199 5_4:-19230165 Msa0842240:CDS
GTATATTTGGAACGGCTGCA+GGG 0.618253 5_4:+19229186 None:intergenic
CTTGAGGAAGGAACTAGCAA+GGG 0.620729 5_4:-19229974 Msa0842240:CDS
TGATGTTTATACTATTTAGG+TGG 0.620905 5_4:-19229389 Msa0842240:three_prime_UTR
CAAAGTGGATAGAACCTGCA+TGG 0.622228 5_4:-19230170 Msa0842240:CDS
AATAGTTTGTGTAAATGTCG+AGG 0.623169 5_4:+19229336 None:intergenic
TGCCTAAACGGTTGACACGA+GGG 0.624271 5_4:-19228836 Msa0842240:three_prime_UTR
CATCATCATGTTGTTCCAAG+CGG 0.624291 5_4:-19228722 Msa0842240:three_prime_UTR
TTGTTGTAGGAGGAACCACC+AGG 0.625499 5_4:+19229629 None:intergenic
GCTTGAGGAAGGAACTAGCA+AGG 0.626424 5_4:-19229975 Msa0842240:CDS
ACGAATTTGTGAGAGGACTG+AGG 0.626974 5_4:+19230297 None:intergenic
TGTTTGTGATAGGAAAGTTG+TGG 0.627468 5_4:-19229744 Msa0842240:CDS
CCACGTGAGTTAACTCACGC+TGG 0.631737 5_4:-19229043 Msa0842240:three_prime_UTR
CAGCAGCCAAATCAGTAGCA+AGG 0.634571 5_4:+19232297 None:intergenic
ATGCCTAAACGGTTGACACG+AGG 0.640680 5_4:-19228837 Msa0842240:three_prime_UTR
GGCCCAAGGTACAATAACTG+TGG 0.641557 5_4:+19228403 None:intergenic
GAAGTTCATTGCACTCCAAG+AGG 0.641830 5_4:+19232201 None:intergenic
TAAACGGTTGACACGAGGGA+AGG 0.642912 5_4:-19228832 Msa0842240:three_prime_UTR
GTATTGAGGTGGTGATGAAG+AGG 0.644898 5_4:+19230244 None:intergenic
AAAGAGTTGGTAACACAAAG+GGG 0.655511 5_4:-19227954 Msa0842240:three_prime_UTR
TGCATTGCATATGTACCACT+AGG 0.660656 5_4:+19228862 None:intergenic
TGTTATGGTGAATAGGAATG+AGG 0.664290 5_4:-19229705 Msa0842240:CDS
AGTGAATACGAATTTGTGAG+AGG 0.665978 5_4:+19230290 None:intergenic
TATTGAGGTGGTGATGAAGA+GGG 0.674916 5_4:+19230245 None:intergenic
CAGCGTGAGTTAACTCACGT+GGG 0.689933 5_4:+19229044 None:intergenic
TATGTAAAATTAGTGCTGTG+TGG 0.696188 5_4:+19232739 None:intergenic
AGCGTGAGTTAACTCACGTG+GGG 0.708773 5_4:+19229045 None:intergenic
GAACCATATCCGTATAGACG+AGG 0.709030 5_4:-19230389 Msa0842240:CDS
AAAACTTAGACAAATCCTAG+TGG 0.714850 5_4:-19228877 Msa0842240:three_prime_UTR
GAACAATACATATAAATACG+GGG 0.738486 5_4:-19229450 Msa0842240:three_prime_UTR
CCCAAGGTACAATAACTGTG+GGG 0.763122 5_4:+19228405 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAGATTTTTTGAAAAA+TGG - chr5_4:19227945-19227964 Msa0842240:three_prime_UTR 10.0%
!!! TTGTTTTTTAAAATTTCAAT+GGG + chr5_4:19228697-19228716 None:intergenic 10.0%
!!! ATTGTTTTTTAAAATTTCAA+TGG + chr5_4:19228698-19228717 None:intergenic 10.0%
!!! ATTAAGCTTTTTTTTTTTTT+AGG - chr5_4:19229230-19229249 Msa0842240:three_prime_UTR 10.0%
!!! TTAAGCTTTTTTTTTTTTTA+GGG - chr5_4:19229231-19229250 Msa0842240:three_prime_UTR 10.0%
!!! TATTTGTTGAATTAATTTTT+AGG - chr5_4:19230130-19230149 Msa0842240:CDS 10.0%
!! TTATATATTGAATTAAATCT+TGG + chr5_4:19231038-19231057 None:intergenic 10.0%
!! AAGATTTAATTCAATATATA+AGG - chr5_4:19231037-19231056 Msa0842240:intron 10.0%
!!! AATATTGATTTCTTTTTTTA+GGG + chr5_4:19232272-19232291 None:intergenic 10.0%
!!! AAATATTGATTTCTTTTTTT+AGG + chr5_4:19232273-19232292 None:intergenic 10.0%
!! TATATCAAGAATTATGTATT+TGG - chr5_4:19228671-19228690 Msa0842240:three_prime_UTR 15.0%
!!! AAAAGCTTAATAGTTTTATT+TGG + chr5_4:19229221-19229240 None:intergenic 15.0%
!!! GTTTTCTAAAAAAAACTATT+AGG - chr5_4:19229462-19229481 Msa0842240:three_prime_UTR 15.0%
!! AATTATTGATCTAACTATTT+AGG + chr5_4:19229638-19229657 None:intergenic 15.0%
!! TTGAACAATACATATAAATA+CGG - chr5_4:19231186-19231205 Msa0842240:intron 15.0%
!!! AGCAAAATTCATTATTTTAT+GGG + chr5_4:19231407-19231426 None:intergenic 15.0%
!! TGAAGAAAAAAATACAAAAA+AGG + chr5_4:19232188-19232207 None:intergenic 15.0%
!!! GAAAATAAGTTGCATTATTT+TGG - chr5_4:19228302-19228321 Msa0842240:three_prime_UTR 20.0%
!!! ATTATTTTGGATGGAATATT+TGG - chr5_4:19228315-19228334 Msa0842240:three_prime_UTR 20.0%
!! GATATATATATACCTCTAAT+GGG + chr5_4:19228462-19228481 None:intergenic 20.0%
!! AGAATAAAATCAAGAGAATA+TGG + chr5_4:19228546-19228565 None:intergenic 20.0%
!!! CTTCTTTAAACTTTTTAGTA+CGG + chr5_4:19228645-19228664 None:intergenic 20.0%
!! AAAACAATAAAGAGAGAAAA+AGG - chr5_4:19228997-19229016 Msa0842240:three_prime_UTR 20.0%
!! GAGTGAACATTTAATAAATA+GGG + chr5_4:19229394-19229413 None:intergenic 20.0%
!! TAAATGATAAACAAAAGTGA+TGG + chr5_4:19229416-19229435 None:intergenic 20.0%
!!! TTTATCTTACCTATTTTAAG+AGG - chr5_4:19229432-19229451 Msa0842240:three_prime_UTR 20.0%
!! TCTAAAAAAAACTATTAGGA+TGG - chr5_4:19229466-19229485 Msa0842240:three_prime_UTR 20.0%
!! AATGAAAAGTAAGTTCAAAA+TGG + chr5_4:19229720-19229739 None:intergenic 20.0%
!!! ATAGCAAAAAACAGTTTTTA+TGG - chr5_4:19230596-19230615 Msa0842240:intron 20.0%
!!! TAGCAAAAAACAGTTTTTAT+GGG - chr5_4:19230597-19230616 Msa0842240:intron 20.0%
!! TGAACAATACATATAAATAC+GGG - chr5_4:19231187-19231206 Msa0842240:intron 20.0%
!! ATGTGATGTTTATACTATTT+AGG - chr5_4:19231246-19231265 Msa0842240:intron 20.0%
!!! GAGCAAAATTCATTATTTTA+TGG + chr5_4:19231408-19231427 None:intergenic 20.0%
!!! GTAAAAATCGTTTTTTTACA+CGG - chr5_4:19231552-19231571 Msa0842240:intron 20.0%
!! ATTAAAAAGCAAAAAGTCTT+GGG + chr5_4:19231695-19231714 None:intergenic 20.0%
!!! TCGAAATTTTATTTTTTACG+TGG - chr5_4:19232360-19232379 Msa0842240:CDS 20.0%
! GTGGAGTTATATATGTATTA+AGG + chr5_4:19227883-19227902 None:intergenic 25.0%
! TACATATGCAAGAAAGTTAT+AGG - chr5_4:19227916-19227935 Msa0842240:three_prime_UTR 25.0%
!!! ATAAGTTGCATTATTTTGGA+TGG - chr5_4:19228306-19228325 Msa0842240:three_prime_UTR 25.0%
!!! TATTAGTTCTTGTTGCTTTT+GGG - chr5_4:19228395-19228414 Msa0842240:three_prime_UTR 25.0%
! GGATATATATATACCTCTAA+TGG + chr5_4:19228463-19228482 None:intergenic 25.0%
!! TGAGTGAGTAATACATTTTT+GGG + chr5_4:19228759-19228778 None:intergenic 25.0%
!! ATGAGTGAGTAATACATTTT+TGG + chr5_4:19228760-19228779 None:intergenic 25.0%
!! TGTCCAAATTATTTCTTACA+TGG - chr5_4:19228887-19228906 Msa0842240:three_prime_UTR 25.0%
!! GTCCAAATTATTTCTTACAT+GGG - chr5_4:19228888-19228907 Msa0842240:three_prime_UTR 25.0%
! TTCCCATGTAAGAAATAATT+TGG + chr5_4:19228893-19228912 None:intergenic 25.0%
! ATATGGATATAATGTGAGTA+TGG - chr5_4:19229030-19229049 Msa0842240:three_prime_UTR 25.0%
! TATGGATATAATGTGAGTAT+GGG - chr5_4:19229031-19229050 Msa0842240:three_prime_UTR 25.0%
! TAAAATATTTGACGAAGATG+CGG - chr5_4:19229122-19229141 Msa0842240:three_prime_UTR 25.0%
! AATAGATAGATAGATAGACT+TGG - chr5_4:19229180-19229199 Msa0842240:three_prime_UTR 25.0%
! GGAGTGAACATTTAATAAAT+AGG + chr5_4:19229395-19229414 None:intergenic 25.0%
!!! ACTTGTTATCCTCTTAAAAT+AGG + chr5_4:19229444-19229463 None:intergenic 25.0%
!!! CAAAAACGTTTAGAACTTTT+AGG - chr5_4:19229568-19229587 Msa0842240:exon 25.0%
! TATTTAGGAGTGAAATGAAA+AGG + chr5_4:19229623-19229642 None:intergenic 25.0%
! AAAAGTAAGTTCAAAATGGA+CGG + chr5_4:19229716-19229735 None:intergenic 25.0%
!! GATGGTTCAATTTTTGAATT+TGG + chr5_4:19229895-19229914 None:intergenic 25.0%
! GTGTTTGTATCGAAATAATT+AGG + chr5_4:19230094-19230113 None:intergenic 25.0%
!! ATTTGCTTTAAGTGATTGTT+TGG + chr5_4:19230287-19230306 None:intergenic 25.0%
!!! ATGATTTTTTTGTGGTATTG+AGG + chr5_4:19230411-19230430 None:intergenic 25.0%
!!! TGGAAATGATGATTTTTTTG+TGG + chr5_4:19230419-19230438 None:intergenic 25.0%
! CTCTTAAAGAAAAAAGATGA+TGG + chr5_4:19230439-19230458 None:intergenic 25.0%
! TAAGAGCAATTTATTCAAAG+TGG - chr5_4:19230453-19230472 Msa0842240:CDS 25.0%
!! ACATATATAACCGATTTCAA+TGG + chr5_4:19230511-19230530 None:intergenic 25.0%
!!! TCGGTTATATATGTTAGTTT+TGG - chr5_4:19230517-19230536 Msa0842240:intron 25.0%
!! ATTATTTCTTCTCTCTTCAT+TGG + chr5_4:19230553-19230572 None:intergenic 25.0%
! GAGAAGAAATAATTGAGATT+TGG - chr5_4:19230560-19230579 Msa0842240:intron 25.0%
!! ATTTGTTGATCAGCAAAATA+AGG + chr5_4:19230823-19230842 None:intergenic 25.0%
! CTGATCAACAAATAAATAGT+AGG - chr5_4:19230830-19230849 Msa0842240:intron 25.0%
! GAACAATACATATAAATACG+GGG - chr5_4:19231188-19231207 Msa0842240:intron 25.0%
! ACATCTTTATTCAAAGCTTA+AGG + chr5_4:19231230-19231249 None:intergenic 25.0%
! TGATGTTTATACTATTTAGG+TGG - chr5_4:19231249-19231268 Msa0842240:intron 25.0%
!! TCGAATGTATATTTCTAACA+TGG - chr5_4:19231365-19231384 Msa0842240:intron 25.0%
! CATTAAAAAGCAAAAAGTCT+TGG + chr5_4:19231696-19231715 None:intergenic 25.0%
! AAGCATATATCAGAAGATAA+GGG - chr5_4:19231945-19231964 Msa0842240:intron 25.0%
! TCACACAAGTGTAAAAAAAA+CGG - chr5_4:19231998-19232017 Msa0842240:intron 25.0%
! AAATACAAAAAAGGACAACA+TGG + chr5_4:19232179-19232198 None:intergenic 25.0%
!!! TTTTTTAGGGTCAAAATTGT+AGG + chr5_4:19232259-19232278 None:intergenic 25.0%
!! GAACAAATCTGGAAATTTTA+TGG - chr5_4:19232323-19232342 Msa0842240:CDS 25.0%
!!! TGAAAGATATTTTGAGATGT+TGG - chr5_4:19232388-19232407 Msa0842240:CDS 25.0%
TATGTAAAATTAGTGCTGTG+TGG + chr5_4:19227902-19227921 None:intergenic 30.0%
AAAAATGGAAACACAACCTA+AGG - chr5_4:19227960-19227979 Msa0842240:three_prime_UTR 30.0%
! TGTGAAGAAGATTTTTCCTT+AGG + chr5_4:19227979-19227998 None:intergenic 30.0%
! GCTTTAGCATTGAATTTACA+TGG + chr5_4:19228032-19228051 None:intergenic 30.0%
! TAGTCTTGAATTGAAGCTTA+GGG + chr5_4:19228167-19228186 None:intergenic 30.0%
! ATAGTCTTGAATTGAAGCTT+AGG + chr5_4:19228168-19228187 None:intergenic 30.0%
!!! CTATTAGTTCTTGTTGCTTT+TGG - chr5_4:19228394-19228413 Msa0842240:three_prime_UTR 30.0%
TTGGGTCATGCTATTAAAAA+AGG + chr5_4:19228741-19228760 None:intergenic 30.0%
ATACTAAACCTTGTGAATAC+AGG + chr5_4:19228799-19228818 None:intergenic 30.0%
AAGGTTTAGTATATACCATG+AGG - chr5_4:19228807-19228826 Msa0842240:three_prime_UTR 30.0%
AGGTTTAGTATATACCATGA+GGG - chr5_4:19228808-19228827 Msa0842240:three_prime_UTR 30.0%
! TTCATTTTCTCTCTTCTCAT+TGG - chr5_4:19228971-19228990 Msa0842240:three_prime_UTR 30.0%
AAAAAGGAAGAGAGAGAATA+TGG - chr5_4:19229013-19229032 Msa0842240:three_prime_UTR 30.0%
GTCAAAAAGTTGTAAGAAAG+TGG - chr5_4:19229064-19229083 Msa0842240:three_prime_UTR 30.0%
ATTTGCAAATAGCAATTGCT+AGG - chr5_4:19229148-19229167 Msa0842240:three_prime_UTR 30.0%
TTCAAGTGTGTTTGTATACA+TGG - chr5_4:19229689-19229708 Msa0842240:CDS 30.0%
TTCAAGTGTGTTTGTATACA+TGG - chr5_4:19229689-19229708 Msa0842240:CDS 30.0%
!! ATCGTGCGATTTTAATAAGA+TGG + chr5_4:19229913-19229932 None:intergenic 30.0%
!! GAATTAATTTTTAGGAGACG+AGG - chr5_4:19230138-19230157 Msa0842240:CDS 30.0%
! TTGTTTTCTCGACAAAAACT+TGG + chr5_4:19230226-19230245 None:intergenic 30.0%
!!! ATTTTTTTGTGGTATTGAGG+TGG + chr5_4:19230408-19230427 None:intergenic 30.0%
GAAATAATTGAGATTTGGCA+TGG - chr5_4:19230565-19230584 Msa0842240:intron 30.0%
! AACAGTTTTTATGGGTGATT+AGG - chr5_4:19230605-19230624 Msa0842240:intron 30.0%
TCAAACATGGTACAAGAAAA+AGG - chr5_4:19230628-19230647 Msa0842240:intron 30.0%
!!! GTGCTTTTTTGACACATAAT+GGG - chr5_4:19230746-19230765 Msa0842240:intron 30.0%
AAATAAGGCCAACAAATCAT+AGG + chr5_4:19230808-19230827 None:intergenic 30.0%
ATATGAAGGATGTTTGTGAT+AGG - chr5_4:19230884-19230903 Msa0842240:intron 30.0%
GAATATGGTGAATGATGTTA+TGG - chr5_4:19230918-19230937 Msa0842240:intron 30.0%
TGAATGATGTTATGGTGAAT+AGG - chr5_4:19230926-19230945 Msa0842240:intron 30.0%
TAAATCTTGGAAGTTGTTGT+AGG + chr5_4:19231025-19231044 None:intergenic 30.0%
TCTACTATCCCGTAAAATAA+GGG - chr5_4:19231060-19231079 Msa0842240:intron 30.0%
!!! AAAGCAATGCCCTTATTTTA+CGG + chr5_4:19231072-19231091 None:intergenic 30.0%
!! AAGAGATGTTTTTACTAGTG+AGG + chr5_4:19231102-19231121 None:intergenic 30.0%
! AATAGTTTGTGTAAATGTCG+AGG + chr5_4:19231305-19231324 None:intergenic 30.0%
AAAACTTAGACAAATCCTAG+TGG - chr5_4:19231761-19231780 Msa0842240:intron 30.0%
AGTAGTAATTTCTTTCCAAG+TGG - chr5_4:19231864-19231883 Msa0842240:intron 30.0%
GAAGCATATATCAGAAGATA+AGG - chr5_4:19231944-19231963 Msa0842240:intron 30.0%
!!! AACTAACGTAAGAGCATTTT+TGG - chr5_4:19232089-19232108 Msa0842240:intron 30.0%
! CAAATCTGGAAATTTTATGG+AGG - chr5_4:19232326-19232345 Msa0842240:CDS 30.0%
! GGAGTTAAAAGTATAAGTGT+AGG - chr5_4:19232421-19232440 Msa0842240:CDS 30.0%
! AAGTATAAGTGTAGGCATTT+TGG - chr5_4:19232429-19232448 Msa0842240:CDS 30.0%
! AGTATAAGTGTAGGCATTTT+GGG - chr5_4:19232430-19232449 Msa0842240:CDS 30.0%
TGGTGTTTGTAACTCAATAT+AGG - chr5_4:19232461-19232480 Msa0842240:CDS 30.0%
! AAGAGTTGGTTAGACAAAAA+AGG - chr5_4:19232554-19232573 Msa0842240:CDS 30.0%
!! AAGAAGTTGGTAAGACAAAA+TGG - chr5_4:19232746-19232765 Msa0842240:five_prime_UTR 30.0%
!! TATGAATGTATTCGGTGTTG+AGG + chr5_4:19228095-19228114 None:intergenic 35.0%
GAGTCGGTTATGAATGTATT+CGG + chr5_4:19228103-19228122 None:intergenic 35.0%
CATCGTTGAATTGAATGAGT+CGG + chr5_4:19228119-19228138 None:intergenic 35.0%
! ATTGTGTCACTGAGTTTGTA+TGG - chr5_4:19228246-19228265 Msa0842240:three_prime_UTR 35.0%
!! CTCTAAGAGCAATTTTAGAG+TGG + chr5_4:19228484-19228503 None:intergenic 35.0%
GAATACAGGTGTGAAAAAAG+TGG + chr5_4:19228785-19228804 None:intergenic 35.0%
! TTTTCACACCTGTATTCACA+AGG - chr5_4:19228788-19228807 Msa0842240:three_prime_UTR 35.0%
ACATGGACGGATATAACATA+AGG - chr5_4:19228842-19228861 Msa0842240:three_prime_UTR 35.0%
GTCAACAAAGTTGTCACAAA+TGG + chr5_4:19228947-19228966 None:intergenic 35.0%
! CGGATCGATGACTAAATTTT+TGG + chr5_4:19229341-19229360 None:intergenic 35.0%
CGCAAATAATTACCTACAAC+GGG + chr5_4:19229371-19229390 None:intergenic 35.0%
GCGCAAATAATTACCTACAA+CGG + chr5_4:19229372-19229391 None:intergenic 35.0%
TAGGAGTGAAATGAAAAGGT+TGG + chr5_4:19229619-19229638 None:intergenic 35.0%
AACTGTTCGTTCAAAATGGA+CGG + chr5_4:19229856-19229875 None:intergenic 35.0%
TGTGAACTGTTCGTTCAAAA+TGG + chr5_4:19229860-19229879 None:intergenic 35.0%
TAAGGTCTAGTGTGTGTATA+TGG + chr5_4:19229982-19230001 None:intergenic 35.0%
AGAAACATGCCAAGTGAATA+AGG + chr5_4:19230000-19230019 None:intergenic 35.0%
CATAACAAACATTCCAGGTA+TGG - chr5_4:19230174-19230193 Msa0842240:CDS 35.0%
ACTCATACTCAACACATTTG+AGG - chr5_4:19230309-19230328 Msa0842240:CDS 35.0%
AGTGAATACGAATTTGTGAG+AGG + chr5_4:19230351-19230370 None:intergenic 35.0%
TGACTCTCAACCATTGAAAT+CGG - chr5_4:19230498-19230517 Msa0842240:intron 35.0%
AGGATTATTAAGTGAGCTTG+AGG - chr5_4:19230648-19230667 Msa0842240:intron 35.0%
TTATTAAGTGAGCTTGAGGA+AGG - chr5_4:19230652-19230671 Msa0842240:intron 35.0%
! TAAAGGGTTGATTGTTGGAT+GGG - chr5_4:19230687-19230706 Msa0842240:intron 35.0%
!! AGAGGAAGTTTTGTCACATA+AGG - chr5_4:19230717-19230736 Msa0842240:intron 35.0%
! GTTTTGTCACATAAGGCAAT+TGG - chr5_4:19230724-19230743 Msa0842240:intron 35.0%
!!! GGTGCTTTTTTGACACATAA+TGG - chr5_4:19230745-19230764 Msa0842240:intron 35.0%
!!! CTTTTTTGACACATAATGGG+TGG - chr5_4:19230749-19230768 Msa0842240:intron 35.0%
! TAATGGGTGGAATTCAACTT+TGG - chr5_4:19230762-19230781 Msa0842240:intron 35.0%
! GAATTCAACTTTGGAAAGTG+TGG - chr5_4:19230771-19230790 Msa0842240:intron 35.0%
AAATAGTAGGTTTGTGAGTG+AGG - chr5_4:19230843-19230862 Msa0842240:intron 35.0%
TGTTTGTGATAGGAAAGTTG+TGG - chr5_4:19230894-19230913 Msa0842240:intron 35.0%
TAGGAAAGTTGTGGAGAATA+TGG - chr5_4:19230903-19230922 Msa0842240:intron 35.0%
TGTTATGGTGAATAGGAATG+AGG - chr5_4:19230933-19230952 Msa0842240:intron 35.0%
TGTAAAATCAGCCATGGATA+TGG - chr5_4:19230960-19230979 Msa0842240:intron 35.0%
GTCTACTATCCCGTAAAATA+AGG - chr5_4:19231059-19231078 Msa0842240:intron 35.0%
!!! AAGCAATGCCCTTATTTTAC+GGG + chr5_4:19231071-19231090 None:intergenic 35.0%
!! ATGTTTTTACTAGTGAGGCA+TGG + chr5_4:19231097-19231116 None:intergenic 35.0%
TCACATTGAACCAAAATTCG+AGG - chr5_4:19231162-19231181 Msa0842240:intron 35.0%
CACATTGAACCAAAATTCGA+GGG - chr5_4:19231163-19231182 Msa0842240:intron 35.0%
! ATTGTTCAACCCTCGAATTT+TGG + chr5_4:19231175-19231194 None:intergenic 35.0%
!!! TCGTCTTTTTTTCGGTTACA+CGG - chr5_4:19231621-19231640 Msa0842240:intron 35.0%
AAAAGCAAAAAGTCTTGGGA+TGG + chr5_4:19231691-19231710 None:intergenic 35.0%
TGCAATGCATTATGCCTAAA+CGG - chr5_4:19231790-19231809 Msa0842240:intron 35.0%
! GGAAATTTTATGGAGGTTTG+TGG - chr5_4:19232333-19232352 Msa0842240:CDS 35.0%
TCTTTCAATTTCACGATGAG+TGG + chr5_4:19232538-19232557 None:intergenic 35.0%
CATCGTGAAATTGAAAGAGT+TGG - chr5_4:19232540-19232559 Msa0842240:CDS 35.0%
CTTCGTGAAATCAAAGTTGT+TGG - chr5_4:19232606-19232625 Msa0842240:CDS 35.0%
! AAGTTGTTGGTTAGACTAAG+AGG - chr5_4:19232619-19232638 Msa0842240:CDS 35.0%
TCTTTCGATTTCACGAAGAA+TGG + chr5_4:19232669-19232688 None:intergenic 35.0%
!! GAAAGAGTTGGTAACACAAA+GGG - chr5_4:19232683-19232702 Msa0842240:exon 35.0%
!! AAAGAGTTGGTAACACAAAG+GGG - chr5_4:19232684-19232703 Msa0842240:exon 35.0%
AACTTCTTCGTTACGAAGAA+TGG + chr5_4:19232734-19232753 None:intergenic 35.0%
ATTCTTCGTAACGAAGAAGT+TGG - chr5_4:19232733-19232752 Msa0842240:five_prime_UTR 35.0%
TTTCTGTGTTCCAAACCTCT+TGG - chr5_4:19228422-19228441 Msa0842240:three_prime_UTR 40.0%
TGCAATGAACTTCCCATTAG+AGG - chr5_4:19228447-19228466 Msa0842240:three_prime_UTR 40.0%
GACGGATATAACATAAGGTG+TGG - chr5_4:19228847-19228866 Msa0842240:three_prime_UTR 40.0%
TAATTACCTACAACGGGTCA+GGG + chr5_4:19229365-19229384 None:intergenic 40.0%
ATAATTACCTACAACGGGTC+AGG + chr5_4:19229366-19229385 None:intergenic 40.0%
TTGTGTCTGTCGTCCATTTA+GGG - chr5_4:19229591-19229610 Msa0842240:CDS 40.0%
CACACTAGACCTTATTCACT+TGG - chr5_4:19229988-19230007 Msa0842240:CDS 40.0%
!! ATTTTTAGGAGACGAGGACA+TGG - chr5_4:19230144-19230163 Msa0842240:CDS 40.0%
CGCATCATAACAAACATTCC+AGG - chr5_4:19230169-19230188 Msa0842240:CDS 40.0%
GAAGTACAACCTCGTCTATA+CGG + chr5_4:19230261-19230280 None:intergenic 40.0%
TTCCCTAAACTCTACACCAT+AGG - chr5_4:19230370-19230389 Msa0842240:CDS 40.0%
! TATTGAGGTGGTGATGAAGA+GGG + chr5_4:19230396-19230415 None:intergenic 40.0%
ATGGGTGATTAGGTCAAACA+TGG - chr5_4:19230615-19230634 Msa0842240:intron 40.0%
AAGGAACTAGCAAGGGTAAA+GGG - chr5_4:19230671-19230690 Msa0842240:intron 40.0%
! AAGGGTAAAGGGTTGATTGT+TGG - chr5_4:19230682-19230701 Msa0842240:intron 40.0%
! GTAAAGGGTTGATTGTTGGA+TGG - chr5_4:19230686-19230705 Msa0842240:intron 40.0%
GTGACAAAACTTCCTCTTGT+GGG + chr5_4:19230714-19230733 None:intergenic 40.0%
TGTGACAAAACTTCCTCTTG+TGG + chr5_4:19230715-19230734 None:intergenic 40.0%
! ACTTTGGAAAGTGTGGTTTG+TGG - chr5_4:19230778-19230797 Msa0842240:intron 40.0%
TGAGTGAGGTTTGGAAACTT+GGG - chr5_4:19230857-19230876 Msa0842240:intron 40.0%
!! GAAACTTGGGTTGGATATGA+AGG - chr5_4:19230870-19230889 Msa0842240:intron 40.0%
GGAGTTTGTAAAATCAGCCA+TGG - chr5_4:19230954-19230973 Msa0842240:intron 40.0%
ATCTTGGAAGTTGTTGTAGG+AGG + chr5_4:19231022-19231041 None:intergenic 40.0%
ATTTAGGTGGTTGCATCTCT+TGG - chr5_4:19231262-19231281 Msa0842240:intron 40.0%
GTTGCATCTCTTGGTCAAAT+TGG - chr5_4:19231271-19231290 Msa0842240:intron 40.0%
!! ACTATTCTGAAGCACGTAGT+TGG - chr5_4:19231319-19231338 Msa0842240:intron 40.0%
! AACTTGCGCAAGGGTATATT+TGG + chr5_4:19231468-19231487 None:intergenic 40.0%
!!! GCTGGGTTTCGTCTTTTTTT+CGG - chr5_4:19231613-19231632 Msa0842240:intron 40.0%
!!! TCTTTTTTTCGGTTACACGG+TGG - chr5_4:19231624-19231643 Msa0842240:intron 40.0%
!!! CTTTTTTTCGGTTACACGGT+GGG - chr5_4:19231625-19231644 Msa0842240:intron 40.0%
TGCATTGCATATGTACCACT+AGG + chr5_4:19231779-19231798 None:intergenic 40.0%
TTACAACATGCAATGCCACT+TGG + chr5_4:19231882-19231901 None:intergenic 40.0%
CATCATCATGTTGTTCCAAG+CGG - chr5_4:19231916-19231935 Msa0842240:intron 40.0%
!!! AGCATTTTTGGTATGTCTGC+AGG - chr5_4:19232101-19232120 Msa0842240:intron 40.0%
!!! GCATTTTTGGTATGTCTGCA+GGG - chr5_4:19232102-19232121 Msa0842240:intron 40.0%
GCGCAGAAATAGAACAAATC+TGG - chr5_4:19232312-19232331 Msa0842240:CDS 40.0%
! TGAGATGTTGGCAGTGTTTT+TGG - chr5_4:19232400-19232419 Msa0842240:CDS 40.0%
!!! AGGCATTTTGGGTTGTGATA+TGG - chr5_4:19232441-19232460 Msa0842240:CDS 40.0%
CTTCGTGAAATCGAAAGAGT+TGG - chr5_4:19232671-19232690 Msa0842240:CDS 40.0%
!! CGAAAGAGTTGGTAACACAA+AGG - chr5_4:19232682-19232701 Msa0842240:exon 40.0%
!! GAATTTACATGGCCTTGTGC+TGG + chr5_4:19228021-19228040 None:intergenic 45.0%
!! CATAGTGAAGAGAAGCATCC+TGG - chr5_4:19228198-19228217 Msa0842240:three_prime_UTR 45.0%
!! GAAGAGAAGCATCCTGGATT+TGG - chr5_4:19228204-19228223 Msa0842240:three_prime_UTR 45.0%
AGCATCCTGGATTTGGAGAA+AGG - chr5_4:19228211-19228230 Msa0842240:three_prime_UTR 45.0%
CCTATCCTTTCTCCAAATCC+AGG + chr5_4:19228219-19228238 None:intergenic 45.0%
CCTGGATTTGGAGAAAGGAT+AGG - chr5_4:19228216-19228235 Msa0842240:three_prime_UTR 45.0%
! TGGTGACCTTGCTACTGATT+TGG - chr5_4:19228335-19228354 Msa0842240:three_prime_UTR 45.0%
!! ACTGATTTGGCTGCTGAGTT+TGG - chr5_4:19228348-19228367 Msa0842240:three_prime_UTR 45.0%
!! CTGATTTGGCTGCTGAGTTT+GGG - chr5_4:19228349-19228368 Msa0842240:three_prime_UTR 45.0%
TCATTGCACTCCAAGAGGTT+TGG + chr5_4:19228435-19228454 None:intergenic 45.0%
GAAGTTCATTGCACTCCAAG+AGG + chr5_4:19228440-19228459 None:intergenic 45.0%
TGTTTGTAGCTACTCCCTCA+TGG + chr5_4:19228825-19228844 None:intergenic 45.0%
TGAGGGAGTAGCTACAAACA+TGG - chr5_4:19228825-19228844 Msa0842240:three_prime_UTR 45.0%
GGAGTAGCTACAAACATGGA+CGG - chr5_4:19228829-19228848 Msa0842240:three_prime_UTR 45.0%
AATTACCTACAACGGGTCAG+GGG + chr5_4:19229364-19229383 None:intergenic 45.0%
GTTGTGTCTGTCGTCCATTT+AGG - chr5_4:19229590-19229609 Msa0842240:CDS 45.0%
! GAAAAGGTTGGCTCCCTAAA+TGG + chr5_4:19229607-19229626 None:intergenic 45.0%
CGAAGTAAGTTTGCCATACC+TGG + chr5_4:19230190-19230209 None:intergenic 45.0%
GAACCATATCCGTATAGACG+AGG - chr5_4:19230249-19230268 Msa0842240:CDS 45.0%
CAACCTCGTCTATACGGATA+TGG + chr5_4:19230255-19230274 None:intergenic 45.0%
ACGAATTTGTGAGAGGACTG+AGG + chr5_4:19230344-19230363 None:intergenic 45.0%
GGCCTATGGTGTAGAGTTTA+GGG + chr5_4:19230375-19230394 None:intergenic 45.0%
! GTATTGAGGTGGTGATGAAG+AGG + chr5_4:19230397-19230416 None:intergenic 45.0%
CAAAGTGGATAGAACCTGCA+TGG - chr5_4:19230468-19230487 Msa0842240:CDS 45.0%
CTTGAGGAAGGAACTAGCAA+GGG - chr5_4:19230664-19230683 Msa0842240:intron 45.0%
GAAGGAACTAGCAAGGGTAA+AGG - chr5_4:19230670-19230689 Msa0842240:intron 45.0%
! GTGGTGTGCCTATGATTTGT+TGG - chr5_4:19230797-19230816 Msa0842240:intron 45.0%
GTAGGTTTGTGAGTGAGGTT+TGG - chr5_4:19230848-19230867 Msa0842240:intron 45.0%
GTGAGTGAGGTTTGGAAACT+TGG - chr5_4:19230856-19230875 Msa0842240:intron 45.0%
TGAGGTTTGGAAACTTGGGT+TGG - chr5_4:19230861-19230880 Msa0842240:intron 45.0%
AGCCATGGATATGGCTAAGT+TGG - chr5_4:19230969-19230988 Msa0842240:intron 45.0%
TGCCAACTTAGCCATATCCA+TGG + chr5_4:19230974-19230993 None:intergenic 45.0%
! GTATATTTGGAACGGCTGCA+GGG + chr5_4:19231455-19231474 None:intergenic 45.0%
! GCGCAAGGGTATATTTGGAA+CGG + chr5_4:19231463-19231482 None:intergenic 45.0%
!! GCGTTAGTTAACTTGCGCAA+GGG + chr5_4:19231477-19231496 None:intergenic 45.0%
!! TGCGTTAGTTAACTTGCGCA+AGG + chr5_4:19231478-19231497 None:intergenic 45.0%
TGTGGGGTATGAGAATCTTC+TGG + chr5_4:19232220-19232239 None:intergenic 45.0%
ACCCCACAGTTATTGTACCT+TGG - chr5_4:19232232-19232251 Msa0842240:CDS 45.0%
CCCAAGGTACAATAACTGTG+GGG + chr5_4:19232236-19232255 None:intergenic 45.0%
CCCCACAGTTATTGTACCTT+GGG - chr5_4:19232233-19232252 Msa0842240:CDS 45.0%
GCCCAAGGTACAATAACTGT+GGG + chr5_4:19232237-19232256 None:intergenic 45.0%
AGGGGATAAGCTGAGATTCA+TGG - chr5_4:19232702-19232721 Msa0842240:five_prime_UTR 45.0%
!! TATATAATCATTAATATTAT+TGG - chr5_4:19229283-19229302 Msa0842240:three_prime_UTR 5.0%
ATCTTCCCATGTCCAGCACA+AGG - chr5_4:19228006-19228025 Msa0842240:three_prime_UTR 50.0%
CAGCAGCCAAATCAGTAGCA+AGG + chr5_4:19228344-19228363 None:intergenic 50.0%
GGGCCTATGGTGTAGAGTTT+AGG + chr5_4:19230376-19230395 None:intergenic 50.0%
GCTTGAGGAAGGAACTAGCA+AGG - chr5_4:19230663-19230682 Msa0842240:intron 50.0%
TTGTTGTAGGAGGAACCACC+AGG + chr5_4:19231012-19231031 None:intergenic 50.0%
! GGTATATTTGGAACGGCTGC+AGG + chr5_4:19231456-19231475 None:intergenic 50.0%
AGCGTGAGTTAACTCACGTG+GGG + chr5_4:19231596-19231615 None:intergenic 50.0%
CAGCGTGAGTTAACTCACGT+GGG + chr5_4:19231597-19231616 None:intergenic 50.0%
CACGTGAGTTAACTCACGCT+GGG - chr5_4:19231596-19231615 Msa0842240:intron 50.0%
ATGCCTAAACGGTTGACACG+AGG - chr5_4:19231801-19231820 Msa0842240:intron 50.0%
TGCCTAAACGGTTGACACGA+GGG - chr5_4:19231802-19231821 Msa0842240:intron 50.0%
TTCCCTCGTGTCAACCGTTT+AGG + chr5_4:19231807-19231826 None:intergenic 50.0%
TAAACGGTTGACACGAGGGA+AGG - chr5_4:19231806-19231825 Msa0842240:intron 50.0%
TATATGCTTCAGCTGCCGCT+TGG + chr5_4:19231934-19231953 None:intergenic 50.0%
GGCCCAAGGTACAATAACTG+TGG + chr5_4:19232238-19232257 None:intergenic 50.0%
GGGTCAAAATTGTAGGCCCA+AGG + chr5_4:19232252-19232271 None:intergenic 50.0%
!! TCACGATGAGTGGTGTCGAT+CGG + chr5_4:19232528-19232547 None:intergenic 50.0%
!! CATGGCCTTGTGCTGGACAT+GGG + chr5_4:19228014-19228033 None:intergenic 55.0%
!! ACATGGCCTTGTGCTGGACA+TGG + chr5_4:19228015-19228034 None:intergenic 55.0%
! GTGGTGATGAAGAGGGCCTA+TGG + chr5_4:19230389-19230408 None:intergenic 55.0%
TGGATAGAACCTGCATGGCG+TGG - chr5_4:19230473-19230492 Msa0842240:CDS 55.0%
TGTTGGATGGGTCCCACAAG+AGG - chr5_4:19230699-19230718 Msa0842240:intron 55.0%
! GCATCCAAGAGTGTGAGTCC+TGG - chr5_4:19230991-19231010 Msa0842240:intron 55.0%
! TCCAAGAGTGTGAGTCCTGG+TGG - chr5_4:19230994-19231013 Msa0842240:intron 55.0%
ACCACCAGGACTCACACTCT+TGG + chr5_4:19230998-19231017 None:intergenic 55.0%
AGGGCGCAAGCAAAATGTGC+AGG + chr5_4:19231436-19231455 None:intergenic 55.0%
CCAGCGTGAGTTAACTCACG+TGG + chr5_4:19231598-19231617 None:intergenic 55.0%
CCACGTGAGTTAACTCACGC+TGG - chr5_4:19231595-19231614 Msa0842240:intron 55.0%
GGGCGCGAGCGAAAAATACA+AGG - chr5_4:19232122-19232141 Msa0842240:intron 55.0%
!! CACGATGAGTGGTGTCGATC+GGG + chr5_4:19232527-19232546 None:intergenic 55.0%
!! CACGAAGAATGGCGTCGATC+AGG + chr5_4:19232658-19232677 None:intergenic 55.0%
TACCTACAACGGGTCAGGGG+CGG + chr5_4:19229361-19229380 None:intergenic 60.0%
AGAGTCAAGCCACGCCATGC+AGG + chr5_4:19230485-19230504 None:intergenic 60.0%
ATCCGCCCCTGACCCGTTGT+AGG - chr5_4:19229356-19229375 Msa0842240:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 19227856 19232804 19227856 ID=Msa0842240;Name=Msa0842240
chr5_4 mRNA 19227856 19232804 19227856 ID=Msa0842240-mRNA-1;Parent=Msa0842240;Name=Msa0842240-mRNA-1;_AED=0.16;_eAED=0.16;_QI=108|1|1|1|1|1|2|1730|475
chr5_4 exon 19227856 19230508 19227856 ID=Msa0842240-mRNA-1:exon:8029;Parent=Msa0842240-mRNA-1
chr5_4 exon 19232192 19232804 19232192 ID=Msa0842240-mRNA-1:exon:8028;Parent=Msa0842240-mRNA-1
chr5_4 five_prime_UTR 19232697 19232804 19232697 ID=Msa0842240-mRNA-1:five_prime_utr;Parent=Msa0842240-mRNA-1
chr5_4 CDS 19232192 19232696 19232192 ID=Msa0842240-mRNA-1:cds;Parent=Msa0842240-mRNA-1
chr5_4 CDS 19229586 19230508 19229586 ID=Msa0842240-mRNA-1:cds;Parent=Msa0842240-mRNA-1
chr5_4 three_prime_UTR 19227856 19229585 19227856 ID=Msa0842240-mRNA-1:three_prime_utr;Parent=Msa0842240-mRNA-1
Gene Sequence

>Msa0842240

ATGGAAACACAACCTAAGGAAAAATCTTCTTCACATGTGCTAATCTTCCCATGTCCAGCACAAGGCCATGTAAATTCAATGCTAAAGCTAGCTGAACTTCTTGCAATTCAACACATCTACATAACTTTCCTCAACACCGAATACATTCATAACCGACTCATTCAATTCAACGATGATATTCAAGCTCTTTTAGAATGTTACCCTAAGCTTCAATTCAAGACTATCTCTGATTTTCATAGTGAAGAGAAGCATCCTGGATTTGGAGAAAGGATAGGTGATGTAATTGTGTCACTGAGTTTGTATGGTAAGTCTTTTTTGAGAGATATAATTGTCTCTGAGAAAATAAGTTGCATTATTTTGGATGGAATATTTGGTGACCTTGCTACTGATTTGGCTGCTGAGTTTGGGATACAATTGATTCATTTTCGTACTATTAGTTCTTGTTGCTTTTGGGCTTATTTCTGTGTTCCAAACCTCTTGGAGTGCAATGAACTTCCCATTAGAGGAGACGAGGACATGGATCGCATCATAACAAACATTCCAGGTATGGCAAACTTACTTCGATGTAGAGATCTTCCAAGTTTTTGTCGAGAAAACAAAAAGAACCATATCCGTATAGACGAGGTTGTACTTCGAACCAAACAATCACTTAAAGCAAATGCACTCATACTCAACACATTTGAGGATCTAGAAGCCTCAGTCCTCTCACAAATTCGTATTCACTTCCCTAAACTCTACACCATAGGCCCTCTTCATCACCACCTCAATACCACAAAAAAATCATCATTTCCATCATCTTTTTTCTTTAAGAGCAATTTATTCAAAGTGGATAGAACCTGCATGGCGTGGCTTGACTCTCAACCATTGAAATCGGTTATATATGTTAGTTTTGGAAGCACTACACCAATGAAGAGAGAAGAAATAATTGAGATTTGGCATGGTTTATTGAATAGCAAAAAACAGTTTTTATGGGTGATTAGGTCAAACATGGTACAAGAAAAAGGATTATTAAGTGAGCTTGAGGAAGGAACTAGCAAGGGTAAAGGGTTGATTGTTGGATGGGTCCCACAAGAGGAAGTTTTGTCACATAAGGCAATTGGTGCTTTTTTGACACATAATGGGTGGAATTCAACTTTGGAAAGTGTGGTTTGTGGTGTGCCTATGATTTGTTGGCCTTATTTTGCTGATCAACAAATAAATAGTAGGTTTGTGAGTGAGGTTTGGAAACTTGGGTTGGATATGAAGGATGTTTGTGATAGGAAAGTTGTGGAGAATATGGTGAATGATGTTATGGTGAATAGGAATGAGGAGTTTGTAAAATCAGCCATGGATATGGCTAAGTTGGCATCCAAGAGTGTGAGTCCTGGTGGTTCCTCCTACAACAACTTCCAAGATTTAATTCAATATATAAGGTCTACTATCCCGTAA

Protein sequence

>Msa0842240

METQPKEKSSSHVLIFPCPAQGHVNSMLKLAELLAIQHIYITFLNTEYIHNRLIQFNDDIQALLECYPKLQFKTISDFHSEEKHPGFGERIGDVIVSLSLYGKSFLRDIIVSEKISCIILDGIFGDLATDLAAEFGIQLIHFRTISSCCFWAYFCVPNLLECNELPIRGDEDMDRIITNIPGMANLLRCRDLPSFCRENKKNHIRIDEVVLRTKQSLKANALILNTFEDLEASVLSQIRIHFPKLYTIGPLHHHLNTTKKSSFPSSFFFKSNLFKVDRTCMAWLDSQPLKSVIYVSFGSTTPMKREEIIEIWHGLLNSKKQFLWVIRSNMVQEKGLLSELEEGTSKGKGLIVGWVPQEEVLSHKAIGAFLTHNGWNSTLESVVCGVPMICWPYFADQQINSRFVSEVWKLGLDMKDVCDRKVVENMVNDVMVNRNEEFVKSAMDMAKLASKSVSPGGSSYNNFQDLIQYIRSTIP*