Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317390 | XP_003594311.2 | 96.575 | 584 | 17 | 1 | 1 | 581 | 1 | 584 | 0.0 | 1094 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317390 | sp|Q9FWW5|Y1215_ARATH | 45.179 | 560 | 276 | 8 | 11 | 563 | 8 | 543 | 2.49e-125 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050760 | Msa0317390 | 0.801479 | 8.833371e-49 | -8.615850e-47 |
| Msa0102680 | Msa0317390 | 0.800638 | 1.312163e-48 | -8.615850e-47 |
| Msa0102750 | Msa0317390 | 0.831263 | 1.843464e-55 | -8.615850e-47 |
| Msa0105420 | Msa0317390 | 0.823483 | 1.351757e-53 | -8.615850e-47 |
| Msa0197850 | Msa0317390 | 0.906248 | 1.817650e-80 | -8.615850e-47 |
| Msa0217400 | Msa0317390 | 0.803436 | 3.489413e-49 | -8.615850e-47 |
| Msa0239510 | Msa0317390 | 0.928638 | 2.174330e-92 | -8.615850e-47 |
| Msa0276920 | Msa0317390 | 0.801488 | 8.793698e-49 | -8.615850e-47 |
| Msa0296560 | Msa0317390 | 0.802007 | 6.880586e-49 | -8.615850e-47 |
| Msa0316850 | Msa0317390 | 0.808868 | 2.506997e-50 | -8.615850e-47 |
| Msa0317390 | Msa0317770 | 0.873167 | 1.813483e-67 | -8.615850e-47 |
| Msa0317390 | Msa0334350 | 0.813641 | 2.308986e-51 | -8.615850e-47 |
| Msa0317390 | Msa0335040 | 0.836653 | 8.249061e-57 | -8.615850e-47 |
| Msa0317390 | Msa0464900 | 0.809788 | 1.591165e-50 | -8.615850e-47 |
| Msa0317390 | Msa0484780 | 0.804830 | 1.789007e-49 | -8.615850e-47 |
| Msa0317390 | Msa0506890 | 0.808116 | 3.627033e-50 | -8.615850e-47 |
| Msa0317390 | Msa0547400 | 0.819532 | 1.105434e-52 | -8.615850e-47 |
| Msa0317390 | Msa0602120 | 0.802880 | 4.547843e-49 | -8.615850e-47 |
| Msa0317390 | Msa0608200 | 0.800783 | 1.225941e-48 | -8.615850e-47 |
| Msa0317390 | Msa0643250 | 0.815208 | 1.039723e-51 | -8.615850e-47 |
| Msa0317390 | Msa0648520 | 0.808124 | 3.612948e-50 | -8.615850e-47 |
| Msa0317390 | Msa0677270 | 0.802046 | 6.754694e-49 | -8.615850e-47 |
| Msa0317390 | Msa0691050 | 0.821519 | 3.866493e-53 | -8.615850e-47 |
| Msa0317390 | Msa0693380 | 0.802402 | 5.707981e-49 | -8.615850e-47 |
| Msa0317390 | Msa0715110 | 0.812733 | 3.655158e-51 | -8.615850e-47 |
| Msa0317390 | Msa0754720 | -0.816823 | 4.533804e-52 | -8.615850e-47 |
| Msa0317390 | Msa0756630 | -0.801956 | 7.050918e-49 | -8.615850e-47 |
| Msa0317390 | Msa0757080 | 0.801398 | 9.173629e-49 | -8.615850e-47 |
| Msa0317390 | Msa0836630 | 0.806600 | 7.602477e-50 | -8.615850e-47 |
| Msa0317390 | Msa0859450 | 0.808974 | 2.378574e-50 | -8.615850e-47 |
| Msa0317390 | Msa0881020 | 0.807576 | 4.725271e-50 | -8.615850e-47 |
| Msa0317390 | Msa0881030 | 0.801465 | 8.889739e-49 | -8.615850e-47 |
| Msa0317390 | Msa0893810 | 0.806633 | 7.480592e-50 | -8.615850e-47 |
| Msa0317390 | Msa0908170 | 0.842761 | 2.122218e-58 | -8.615850e-47 |
| Msa0317390 | Msa0933440 | 0.815067 | 1.117496e-51 | -8.615850e-47 |
| Msa0317390 | Msa0959010 | 0.807139 | 5.849711e-50 | -8.615850e-47 |
| Msa0317390 | Msa0993530 | 0.809693 | 1.668094e-50 | -8.615850e-47 |
| Msa0317390 | Msa1104000 | 0.807561 | 4.760496e-50 | -8.615850e-47 |
| Msa0317390 | Msa1185540 | 0.812256 | 4.645392e-51 | -8.615850e-47 |
| Msa0317390 | Msa1358040 | 0.800357 | 1.497000e-48 | -8.615850e-47 |
| Msa0317390 | Msa1404540 | 0.807552 | 4.781037e-50 | -8.615850e-47 |
| Msa0317390 | Msa1440600 | 0.803266 | 3.784016e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317390 | MtrunA17_Chr2g0290651 | 96.575 | 584 | 17 | 1 | 1 | 581 | 1 | 584 | 0.0 | 1094 |
| Msa0317390 | MtrunA17_Chr4g0076431 | 58.844 | 571 | 210 | 7 | 11 | 578 | 2 | 550 | 0.0 | 552 |
| Msa0317390 | MtrunA17_Chr3g0102681 | 43.262 | 564 | 308 | 7 | 9 | 565 | 12 | 570 | 1.96e-107 | 336 |
| Msa0317390 | MtrunA17_Chr3g0078801 | 39.506 | 567 | 330 | 7 | 9 | 565 | 12 | 575 | 1.90e-90 | 292 |
| Msa0317390 | MtrunA17_Chr5g0446731 | 38.624 | 567 | 335 | 7 | 9 | 565 | 12 | 575 | 6.60e-90 | 291 |
| Msa0317390 | MtrunA17_Chr4g0075951 | 52.351 | 319 | 140 | 4 | 262 | 578 | 6 | 314 | 2.24e-77 | 248 |
| Msa0317390 | MtrunA17_Chr3g0133891 | 28.385 | 613 | 357 | 16 | 1 | 562 | 270 | 851 | 6.05e-29 | 122 |
| Msa0317390 | MtrunA17_Chr1g0153431 | 26.833 | 600 | 365 | 18 | 14 | 563 | 259 | 834 | 8.55e-24 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317390 | AT1G12150.2 | 45.179 | 560 | 276 | 8 | 11 | 563 | 8 | 543 | 2.53e-126 | 382 |
| Msa0317390 | AT1G12150.1 | 45.179 | 560 | 276 | 8 | 11 | 563 | 8 | 543 | 2.53e-126 | 382 |
| Msa0317390 | AT5G55860.1 | 41.901 | 568 | 315 | 6 | 6 | 565 | 8 | 568 | 7.36e-87 | 283 |
| Msa0317390 | AT4G17210.1 | 34.043 | 564 | 313 | 7 | 10 | 563 | 12 | 526 | 5.57e-68 | 229 |
| Msa0317390 | AT2G26570.1 | 26.393 | 610 | 380 | 15 | 9 | 575 | 154 | 737 | 9.00e-27 | 115 |
| Msa0317390 | AT2G26570.2 | 26.393 | 610 | 380 | 15 | 9 | 575 | 154 | 737 | 9.00e-27 | 115 |
| Msa0317390 | AT4G33390.1 | 27.919 | 591 | 376 | 16 | 8 | 561 | 138 | 715 | 2.24e-23 | 105 |
| Msa0317390 | AT5G42880.1 | 25.084 | 598 | 363 | 18 | 6 | 565 | 115 | 665 | 4.39e-13 | 72.8 |
| Msa0317390 | AT1G45545.2 | 24.202 | 595 | 349 | 17 | 8 | 562 | 143 | 675 | 4.76e-13 | 72.8 |
| Msa0317390 | AT1G45545.1 | 24.202 | 595 | 349 | 17 | 8 | 562 | 142 | 674 | 5.18e-13 | 72.4 |
Find 100 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTCTTGATGCTTTCA+TGG | 0.211121 | 2_4:-15086456 | None:intergenic |
| AGCTAAAACTTGTCTGTTAA+AGG | 0.228348 | 2_4:-15087798 | None:intergenic |
| TCTTGTAGCATCAAACATTA+AGG | 0.277691 | 2_4:+15085065 | Msa0317390:five_prime_UTR |
| CAATTCTTGAAGTGTTATAT+TGG | 0.291401 | 2_4:-15086102 | None:intergenic |
| TCGAGACTTTGTGTTTCTTC+AGG | 0.293848 | 2_4:-15086614 | None:intergenic |
| TGAAACAAGTGCTGAAATTC+AGG | 0.294476 | 2_4:+15086649 | Msa0317390:CDS |
| CAATCTGTCAAGGCTGCTAT+TGG | 0.319700 | 2_4:+15085307 | Msa0317390:CDS |
| TGCCGCTTTGGAGGCGAAAT+TGG | 0.336907 | 2_4:+15086349 | Msa0317390:CDS |
| TTCTGTCGAGTTAATAACTT+TGG | 0.337764 | 2_4:+15086715 | Msa0317390:CDS |
| GACAAACTTTCATATTGAAC+TGG | 0.338022 | 2_4:-15087709 | None:intergenic |
| TTGGAGAACTATCTCTGTTT+CGG | 0.342248 | 2_4:-15085231 | None:intergenic |
| TTGGTGAAGTTCGTGTCAAC+CGG | 0.365739 | 2_4:+15085335 | Msa0317390:CDS |
| AATAAAAGCAGCAACAGATT+TGG | 0.368777 | 2_4:+15087402 | Msa0317390:CDS |
| AAGGCTGCTATTGGTTTGTT+TGG | 0.369565 | 2_4:+15085316 | Msa0317390:CDS |
| CAAAGAAAAGGAAGATTCTA+TGG | 0.384617 | 2_4:+15086919 | Msa0317390:CDS |
| GAAAGAACATGAGGAACTTA+AGG | 0.391070 | 2_4:+15086838 | Msa0317390:CDS |
| ACCGGAGAATCTGTCTCCTT+TGG | 0.398317 | 2_4:-15085250 | None:intergenic |
| CAAAGAAAATTCTCATCAAA+AGG | 0.404835 | 2_4:+15085038 | Msa0317390:five_prime_UTR |
| TATTTCTTCAGACAAAGCTT+TGG | 0.407479 | 2_4:-15087083 | None:intergenic |
| TGAGAGTCATTGTCAAGAAA+TGG | 0.411564 | 2_4:+15086958 | Msa0317390:CDS |
| ACAAGACTTTGATGCCGCTT+TGG | 0.412091 | 2_4:+15086337 | Msa0317390:CDS |
| TTCTAGCTCTGCAGCGAGAT+TGG | 0.424207 | 2_4:-15087538 | None:intergenic |
| GAAACACCTTAAAATATTGT+TGG | 0.429210 | 2_4:-15084922 | None:intergenic |
| AGGAACCAAAGTTTACATCT+TGG | 0.434259 | 2_4:+15084992 | Msa0317390:five_prime_UTR |
| CATGCTCATTGTCAACATCT+TGG | 0.434871 | 2_4:+15087773 | Msa0317390:three_prime_UTR |
| TGGCGTCAAGAAGAACAAAA+AGG | 0.451952 | 2_4:+15087487 | Msa0317390:CDS |
| AAGAACCAAGATGTAAACTT+TGG | 0.460675 | 2_4:-15084997 | None:intergenic |
| AGAAATAGATAATAAATTGA+TGG | 0.464169 | 2_4:+15086571 | Msa0317390:CDS |
| TGATAGAATTATTTCTATCC+CGG | 0.469818 | 2_4:-15085354 | None:intergenic |
| AGACTTTGATGCCGCTTTGG+AGG | 0.470750 | 2_4:+15086340 | Msa0317390:CDS |
| TACCTTGTAGTTCGCCGGTT+AGG | 0.471965 | 2_4:-15086895 | None:intergenic |
| AAGTGAGGTTGTGAAGAATC+AGG | 0.472219 | 2_4:+15086175 | Msa0317390:CDS |
| AGAGATGAGAATGAAAGCTC+AGG | 0.473161 | 2_4:+15087036 | Msa0317390:CDS |
| GTGTGATATGCAGAATGTAT+TGG | 0.475004 | 2_4:+15085971 | Msa0317390:intron |
| AAAGGAGACTCAGCTTCTCT+TGG | 0.484746 | 2_4:+15085995 | Msa0317390:CDS |
| TATGCAGAATGTATTGGAAA+AGG | 0.485982 | 2_4:+15085977 | Msa0317390:intron |
| GGCAGGAGAAGCTCAGCGTT+CGG | 0.487792 | 2_4:+15086385 | Msa0317390:CDS |
| GCTCTTGCTGCAAACCTAAC+CGG | 0.490559 | 2_4:+15086881 | Msa0317390:CDS |
| GATGAATTTGCTGCTGTAAG+TGG | 0.495024 | 2_4:+15087250 | Msa0317390:CDS |
| AAGCGATAGGGTATGAAGCT+TGG | 0.500293 | 2_4:+15086228 | Msa0317390:CDS |
| AGAACTAGAACATGCAAGAA+AGG | 0.501099 | 2_4:+15086256 | Msa0317390:CDS |
| AGATTCTCCGGTGGGAGAGA+GGG | 0.502913 | 2_4:+15085261 | Msa0317390:CDS |
| AGCGCTTATCGAGCTTGATA+AGG | 0.503328 | 2_4:+15086079 | Msa0317390:CDS |
| TCATATTGAACTGGGAGAGT+TGG | 0.507578 | 2_4:-15087700 | None:intergenic |
| TTGGCTGCATTTCAGATGGC+AGG | 0.508839 | 2_4:+15086368 | Msa0317390:CDS |
| AATCACTTTGGCTGTAGCGT+TGG | 0.509542 | 2_4:+15087616 | Msa0317390:three_prime_UTR |
| TAAGTCTTTCAAGCTCAGAA+TGG | 0.509794 | 2_4:+15087565 | Msa0317390:three_prime_UTR |
| TCAGCAAAACTAGCAGTTGA+AGG | 0.511221 | 2_4:+15087451 | Msa0317390:CDS |
| ACTACAAGGTAGCAAAGAAA+AGG | 0.511736 | 2_4:+15086907 | Msa0317390:CDS |
| GAATGGATTGAGTGAAGTCT+CGG | 0.518504 | 2_4:+15087582 | Msa0317390:three_prime_UTR |
| AGAGTTTCGTAATTCTGAGA+TGG | 0.518540 | 2_4:+15086691 | Msa0317390:CDS |
| TCCAAAGGAGACAGATTCTC+CGG | 0.522645 | 2_4:+15085249 | Msa0317390:CDS |
| TTTGCTACCTTGTAGTTCGC+CGG | 0.522771 | 2_4:-15086900 | None:intergenic |
| AGAAACAACTGCAATGGCTC+AGG | 0.523434 | 2_4:+15087309 | Msa0317390:CDS |
| CAGATTCTCCGGTGGGAGAG+AGG | 0.533950 | 2_4:+15085260 | Msa0317390:CDS |
| AAAGATCAATGAACTTTCAA+AGG | 0.534366 | 2_4:+15086424 | Msa0317390:CDS |
| GGCTCTGAGGAATGCAGAGA+TGG | 0.535386 | 2_4:+15087423 | Msa0317390:CDS |
| AGAAGAACAGATTAAAGCGA+TGG | 0.537448 | 2_4:+15086505 | Msa0317390:CDS |
| GCTTTGTCTGAAGAAATAGA+AGG | 0.539516 | 2_4:+15087088 | Msa0317390:CDS |
| TCAGGCCAAAGAACTCGAAA+AGG | 0.539884 | 2_4:+15086193 | Msa0317390:CDS |
| GCAGCCTTGACAGATTGAAA+TGG | 0.548681 | 2_4:-15085301 | None:intergenic |
| AACAACTGCAATGGCTCAGG+TGG | 0.549356 | 2_4:+15087312 | Msa0317390:CDS |
| GCGCTATCACAGAAAGCGAT+AGG | 0.554886 | 2_4:+15086215 | Msa0317390:CDS |
| CGCTATCACAGAAAGCGATA+GGG | 0.555926 | 2_4:+15086216 | Msa0317390:CDS |
| GGTCCATCACAAAATCACTT+TGG | 0.556573 | 2_4:+15087604 | Msa0317390:three_prime_UTR |
| GAAATTGGCTGCATTTCAGA+TGG | 0.565691 | 2_4:+15086364 | Msa0317390:CDS |
| TCAATCTCCCTCTCTCCCAC+CGG | 0.566121 | 2_4:-15085268 | None:intergenic |
| AGAATCAAAGCAATCTGCAA+TGG | 0.566703 | 2_4:+15086148 | Msa0317390:CDS |
| GAAGAACAGATTAAAGCGAT+GGG | 0.567926 | 2_4:+15086506 | Msa0317390:CDS |
| AGCTTCACTGAGAAACCTTG+TGG | 0.568186 | 2_4:+15086784 | Msa0317390:CDS |
| CTTACCACTGGAATCAGAAA+CGG | 0.572360 | 2_4:-15087212 | None:intergenic |
| AACCTAACCGGCGAACTACA+AGG | 0.573065 | 2_4:+15086893 | Msa0317390:CDS |
| TGGTGAAGTTCGTGTCAACC+GGG | 0.573487 | 2_4:+15085336 | Msa0317390:CDS |
| CTGTCTTAAGCGAATCCACA+AGG | 0.577030 | 2_4:-15086799 | None:intergenic |
| ACATGAGGAACTTAAGGAGA+AGG | 0.580977 | 2_4:+15086844 | Msa0317390:CDS |
| TGTCAACACGATCTTACCAC+TGG | 0.594761 | 2_4:-15087224 | None:intergenic |
| ACAAACTTTCATATTGAACT+GGG | 0.599851 | 2_4:-15087708 | None:intergenic |
| AATGTGAAGATTTGATTGAG+AGG | 0.600637 | 2_4:+15087284 | Msa0317390:CDS |
| AATGGATTGAGTGAAGTCTC+GGG | 0.603563 | 2_4:+15087583 | Msa0317390:three_prime_UTR |
| TCTTTATCTTGAGAGTTGAG+AGG | 0.603983 | 2_4:+15087647 | Msa0317390:three_prime_UTR |
| GAACTTAAGGAGAAGGAACA+AGG | 0.605224 | 2_4:+15086851 | Msa0317390:CDS |
| ATCTGCAATGGAAGAAAGTG+AGG | 0.605339 | 2_4:+15086160 | Msa0317390:CDS |
| AAATAAAAGTTAGACTTGCA+AGG | 0.613854 | 2_4:+15084972 | Msa0317390:five_prime_UTR |
| CAGCAACAGATTTGGCTCTG+AGG | 0.613910 | 2_4:+15087410 | Msa0317390:CDS |
| AGCACCATTTCAATCTGTCA+AGG | 0.619152 | 2_4:+15085297 | Msa0317390:CDS |
| CAAGCAGTTATCATTCGAGA+CGG | 0.628969 | 2_4:+15086991 | Msa0317390:CDS |
| GCGTTCGGCGAAATTGAACT+CGG | 0.630622 | 2_4:+15086400 | Msa0317390:CDS |
| AAGGAGACAGATTCTCCGGT+GGG | 0.630732 | 2_4:+15085253 | Msa0317390:CDS |
| TATCAAGAGAAGATCTTCAG+AGG | 0.632667 | 2_4:+15085372 | Msa0317390:CDS |
| AAACAGAGATAGTTCTCCAA+AGG | 0.633433 | 2_4:+15085234 | Msa0317390:CDS |
| GAGGACAGAAACAACTGCAA+TGG | 0.637220 | 2_4:+15087303 | Msa0317390:CDS |
| GTCTCCGTTTCTGATTCCAG+TGG | 0.639257 | 2_4:+15087208 | Msa0317390:CDS |
| TTGAAGGTGAATTAAAGAAG+TGG | 0.644395 | 2_4:+15087467 | Msa0317390:CDS |
| ACAAGTGAAGAAAGAACATG+AGG | 0.647014 | 2_4:+15086829 | Msa0317390:CDS |
| TAAGGAGAAGGAACAAGGAG+CGG | 0.662020 | 2_4:+15086856 | Msa0317390:CDS |
| AGCCAATTTCGCCTCCAAAG+CGG | 0.663081 | 2_4:-15086351 | None:intergenic |
| AAAGGAGACAGATTCTCCGG+TGG | 0.663875 | 2_4:+15085252 | Msa0317390:CDS |
| CACATCTGCACAATGTTGTG+TGG | 0.666126 | 2_4:-15087744 | None:intergenic |
| TGAAGAAACACAAAGTCTCG+AGG | 0.675914 | 2_4:+15086616 | Msa0317390:CDS |
| AAGTTGTTGTCTGACGCACA+AGG | 0.705883 | 2_4:+15087181 | Msa0317390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGATTATATACTATTTTT+AGG | - | chr2_4:15084876-15084895 | None:intergenic | 10.0% |
| !! | TTATAAAATATTATGTAACA+CGG | + | chr2_4:15085131-15085150 | Msa0317390:intron | 10.0% |
| !! | GTACAAAAAATAAAAAAAAA+AGG | - | chr2_4:15085447-15085466 | None:intergenic | 10.0% |
| !! | GTTATTTATTTGTAATATTA+AGG | - | chr2_4:15085494-15085513 | None:intergenic | 10.0% |
| !!! | ATTTAACCAACAATATTTTA+AGG | + | chr2_4:15084916-15084935 | Msa0317390:five_prime_UTR | 15.0% |
| !!! | TTTTTTTTATTTTTTGTACC+AGG | + | chr2_4:15085448-15085467 | Msa0317390:intron | 15.0% |
| !! | ATATTACAAATAAATAACCA+TGG | + | chr2_4:15085496-15085515 | Msa0317390:intron | 15.0% |
| !! | AGAAATAGATAATAAATTGA+TGG | + | chr2_4:15086571-15086590 | Msa0317390:CDS | 15.0% |
| !! | AACGATTATTTGCAATATTA+AGG | - | chr2_4:15085417-15085436 | None:intergenic | 20.0% |
| !! | TTAATATTGCAAATAATCGT+TGG | + | chr2_4:15085416-15085435 | Msa0317390:intron | 20.0% |
| !! | ATTTGTAATATTAAGGATTG+CGG | - | chr2_4:15085487-15085506 | None:intergenic | 20.0% |
| !!! | AAACTTTTACAAAACTTCAA+AGG | + | chr2_4:15086547-15086566 | Msa0317390:CDS | 20.0% |
| !!! | ACTATTTTTAGGTTGAGAAA+TGG | - | chr2_4:15084865-15084884 | None:intergenic | 25.0% |
| ! | GAAACACCTTAAAATATTGT+TGG | - | chr2_4:15084925-15084944 | None:intergenic | 25.0% |
| ! | AAATAAAAGTTAGACTTGCA+AGG | + | chr2_4:15084972-15084991 | Msa0317390:five_prime_UTR | 25.0% |
| !! | TGATGAGAATTTTCTTTGAA+AGG | - | chr2_4:15085036-15085055 | None:intergenic | 25.0% |
| ! | CAAAGAAAATTCTCATCAAA+AGG | + | chr2_4:15085038-15085057 | Msa0317390:five_prime_UTR | 25.0% |
| ! | ATTGCATAACATGTTACATA+TGG | - | chr2_4:15085112-15085131 | None:intergenic | 25.0% |
| !!! | TGATAGAATTATTTCTATCC+CGG | - | chr2_4:15085357-15085376 | None:intergenic | 25.0% |
| ! | ATTTGCAATATTAAGGATAG+CGG | - | chr2_4:15085410-15085429 | None:intergenic | 25.0% |
| ! | TTATTCGCAAAATTTAACCA+TGG | - | chr2_4:15085516-15085535 | None:intergenic | 25.0% |
| !! | AATAGCAGTTTGTTCAAATT+CGG | + | chr2_4:15085731-15085750 | Msa0317390:intron | 25.0% |
| !!! | AATGCCAATTTTAATACAAG+AGG | + | chr2_4:15085832-15085851 | Msa0317390:intron | 25.0% |
| !! | CAATTCTTGAAGTGTTATAT+TGG | - | chr2_4:15086105-15086124 | None:intergenic | 25.0% |
| !! | TATTTTGTTAAGTTCTTGCT+TGG | - | chr2_4:15086315-15086334 | None:intergenic | 25.0% |
| ! | AAAGATCAATGAACTTTCAA+AGG | + | chr2_4:15086424-15086443 | Msa0317390:CDS | 25.0% |
| ! | ACAAACTTTCATATTGAACT+GGG | - | chr2_4:15087711-15087730 | None:intergenic | 25.0% |
| ! | TTTTTAACAACACTTGAGGT+TGG | + | chr2_4:15084807-15084826 | Msa0317390:five_prime_UTR | 30.0% |
| AAGAACCAAGATGTAAACTT+TGG | - | chr2_4:15085000-15085019 | None:intergenic | 30.0% | |
| !! | GAATTTTCTTTGAAAGGTGT+TGG | - | chr2_4:15085030-15085049 | None:intergenic | 30.0% |
| TCTTGTAGCATCAAACATTA+AGG | + | chr2_4:15085065-15085084 | Msa0317390:five_prime_UTR | 30.0% | |
| TACAATATAGCACTATAGCA+TGG | - | chr2_4:15085757-15085776 | None:intergenic | 30.0% | |
| TGTGCCTCTTGTATTAAAAT+TGG | - | chr2_4:15085839-15085858 | None:intergenic | 30.0% | |
| !!! | TTTTCAAGTTTGCGTGATTT+TGG | + | chr2_4:15085874-15085893 | Msa0317390:intron | 30.0% |
| TATTTATGAGTTATGCGTCA+AGG | + | chr2_4:15085937-15085956 | Msa0317390:intron | 30.0% | |
| TATGCAGAATGTATTGGAAA+AGG | + | chr2_4:15085977-15085996 | Msa0317390:intron | 30.0% | |
| !!! | ATCTAGTTCTTTTACAGTTG+TGG | - | chr2_4:15086288-15086307 | None:intergenic | 30.0% |
| TTCTGTCGAGTTAATAACTT+TGG | + | chr2_4:15086715-15086734 | Msa0317390:CDS | 30.0% | |
| CAAAGAAAAGGAAGATTCTA+TGG | + | chr2_4:15086919-15086938 | Msa0317390:CDS | 30.0% | |
| TATTTCTTCAGACAAAGCTT+TGG | - | chr2_4:15087086-15087105 | None:intergenic | 30.0% | |
| AATGTGAAGATTTGATTGAG+AGG | + | chr2_4:15087284-15087303 | Msa0317390:CDS | 30.0% | |
| AATAAAAGCAGCAACAGATT+TGG | + | chr2_4:15087402-15087421 | Msa0317390:CDS | 30.0% | |
| TTGAAGGTGAATTAAAGAAG+TGG | + | chr2_4:15087467-15087486 | Msa0317390:CDS | 30.0% | |
| TCAAGAAGAACAAAAAGGTT+TGG | + | chr2_4:15087492-15087511 | Msa0317390:CDS | 30.0% | |
| ACAAAAAGGTTTGGATTTGT+CGG | + | chr2_4:15087501-15087520 | Msa0317390:CDS | 30.0% | |
| GACAAACTTTCATATTGAAC+TGG | - | chr2_4:15087712-15087731 | None:intergenic | 30.0% | |
| AGCTAAAACTTGTCTGTTAA+AGG | - | chr2_4:15087801-15087820 | None:intergenic | 30.0% | |
| ! | GCTTTTACATCTCAATATGT+TGG | - | chr2_4:15087850-15087869 | None:intergenic | 30.0% |
| !! | AAATGGATAGAGTTTTGTGG+TGG | - | chr2_4:15084848-15084867 | None:intergenic | 35.0% |
| ! | GAGAAATGGATAGAGTTTTG+TGG | - | chr2_4:15084851-15084870 | None:intergenic | 35.0% |
| !!! | GGTGTTTCCTTGTTTTTCAA+CGG | + | chr2_4:15084937-15084956 | Msa0317390:five_prime_UTR | 35.0% |
| ! | TTTGAGACCGTTGAAAAACA+AGG | - | chr2_4:15084947-15084966 | None:intergenic | 35.0% |
| AGGAACCAAAGTTTACATCT+TGG | + | chr2_4:15084992-15085011 | Msa0317390:five_prime_UTR | 35.0% | |
| TTGGAGAACTATCTCTGTTT+CGG | - | chr2_4:15085234-15085253 | None:intergenic | 35.0% | |
| AAACAGAGATAGTTCTCCAA+AGG | + | chr2_4:15085234-15085253 | Msa0317390:CDS | 35.0% | |
| TATCAAGAGAAGATCTTCAG+AGG | + | chr2_4:15085372-15085391 | Msa0317390:CDS | 35.0% | |
| ATCTTCAGAGGTAAACATCA+CGG | + | chr2_4:15085384-15085403 | Msa0317390:intron | 35.0% | |
| ! | TTTTGACGTCTATGCGATTA+AGG | - | chr2_4:15085555-15085574 | None:intergenic | 35.0% |
| TATTGCACAACAATAGCGAT+TGG | + | chr2_4:15085775-15085794 | Msa0317390:intron | 35.0% | |
| GTGTGATATGCAGAATGTAT+TGG | + | chr2_4:15085971-15085990 | Msa0317390:intron | 35.0% | |
| AGAATCAAAGCAATCTGCAA+TGG | + | chr2_4:15086148-15086167 | Msa0317390:CDS | 35.0% | |
| AGAACTAGAACATGCAAGAA+AGG | + | chr2_4:15086256-15086275 | Msa0317390:CDS | 35.0% | |
| TTCTTCTCTTGATGCTTTCA+TGG | - | chr2_4:15086459-15086478 | None:intergenic | 35.0% | |
| AGAAGAACAGATTAAAGCGA+TGG | + | chr2_4:15086505-15086524 | Msa0317390:CDS | 35.0% | |
| GAAGAACAGATTAAAGCGAT+GGG | + | chr2_4:15086506-15086525 | Msa0317390:CDS | 35.0% | |
| !! | TGAAACAAGTGCTGAAATTC+AGG | + | chr2_4:15086649-15086668 | Msa0317390:CDS | 35.0% |
| ! | AGAGTTTCGTAATTCTGAGA+TGG | + | chr2_4:15086691-15086710 | Msa0317390:CDS | 35.0% |
| ACAAGTGAAGAAAGAACATG+AGG | + | chr2_4:15086829-15086848 | Msa0317390:CDS | 35.0% | |
| GAAAGAACATGAGGAACTTA+AGG | + | chr2_4:15086838-15086857 | Msa0317390:CDS | 35.0% | |
| ACTACAAGGTAGCAAAGAAA+AGG | + | chr2_4:15086907-15086926 | Msa0317390:CDS | 35.0% | |
| TGAGAGTCATTGTCAAGAAA+TGG | + | chr2_4:15086958-15086977 | Msa0317390:CDS | 35.0% | |
| GCTTTGTCTGAAGAAATAGA+AGG | + | chr2_4:15087088-15087107 | Msa0317390:CDS | 35.0% | |
| AGATGAAAAAAGAGCTGTTG+AGG | + | chr2_4:15087153-15087172 | Msa0317390:CDS | 35.0% | |
| TAAGTCTTTCAAGCTCAGAA+TGG | + | chr2_4:15087565-15087584 | Msa0317390:three_prime_UTR | 35.0% | |
| TCTTTATCTTGAGAGTTGAG+AGG | + | chr2_4:15087647-15087666 | Msa0317390:three_prime_UTR | 35.0% | |
| AGCACCATTTCAATCTGTCA+AGG | + | chr2_4:15085297-15085316 | Msa0317390:CDS | 40.0% | |
| !! | AAGGCTGCTATTGGTTTGTT+TGG | + | chr2_4:15085316-15085335 | Msa0317390:CDS | 40.0% |
| AGCATTCAATCTTCGAAGCA+GGG | - | chr2_4:15085628-15085647 | None:intergenic | 40.0% | |
| AAGCATTCAATCTTCGAAGC+AGG | - | chr2_4:15085629-15085648 | None:intergenic | 40.0% | |
| TGCTTCGAAGATTGAATGCT+TGG | + | chr2_4:15085628-15085647 | Msa0317390:intron | 40.0% | |
| TGACTAACTAGCTACCATCT+GGG | - | chr2_4:15085668-15085687 | None:intergenic | 40.0% | |
| ATCTGCAATGGAAGAAAGTG+AGG | + | chr2_4:15086160-15086179 | Msa0317390:CDS | 40.0% | |
| AAGTGAGGTTGTGAAGAATC+AGG | + | chr2_4:15086175-15086194 | Msa0317390:CDS | 40.0% | |
| GAAATTGGCTGCATTTCAGA+TGG | + | chr2_4:15086364-15086383 | Msa0317390:CDS | 40.0% | |
| TCGAGACTTTGTGTTTCTTC+AGG | - | chr2_4:15086617-15086636 | None:intergenic | 40.0% | |
| TGAAGAAACACAAAGTCTCG+AGG | + | chr2_4:15086616-15086635 | Msa0317390:CDS | 40.0% | |
| ACATGAGGAACTTAAGGAGA+AGG | + | chr2_4:15086844-15086863 | Msa0317390:CDS | 40.0% | |
| GAACTTAAGGAGAAGGAACA+AGG | + | chr2_4:15086851-15086870 | Msa0317390:CDS | 40.0% | |
| CAAGCAGTTATCATTCGAGA+CGG | + | chr2_4:15086991-15087010 | Msa0317390:CDS | 40.0% | |
| AGAGATGAGAATGAAAGCTC+AGG | + | chr2_4:15087036-15087055 | Msa0317390:CDS | 40.0% | |
| CTTACCACTGGAATCAGAAA+CGG | - | chr2_4:15087215-15087234 | None:intergenic | 40.0% | |
| !! | GATGAATTTGCTGCTGTAAG+TGG | + | chr2_4:15087250-15087269 | Msa0317390:CDS | 40.0% |
| TCAGCAAAACTAGCAGTTGA+AGG | + | chr2_4:15087451-15087470 | Msa0317390:CDS | 40.0% | |
| TGGCGTCAAGAAGAACAAAA+AGG | + | chr2_4:15087487-15087506 | Msa0317390:CDS | 40.0% | |
| !! | GAATGGATTGAGTGAAGTCT+CGG | + | chr2_4:15087582-15087601 | Msa0317390:three_prime_UTR | 40.0% |
| !! | AATGGATTGAGTGAAGTCTC+GGG | + | chr2_4:15087583-15087602 | Msa0317390:three_prime_UTR | 40.0% |
| GGTCCATCACAAAATCACTT+TGG | + | chr2_4:15087604-15087623 | Msa0317390:three_prime_UTR | 40.0% | |
| ! | CAGCCAAAGTGATTTTGTGA+TGG | - | chr2_4:15087610-15087629 | None:intergenic | 40.0% |
| TCATATTGAACTGGGAGAGT+TGG | - | chr2_4:15087703-15087722 | None:intergenic | 40.0% | |
| CATGCTCATTGTCAACATCT+TGG | + | chr2_4:15087773-15087792 | Msa0317390:three_prime_UTR | 40.0% | |
| TCCAAAGGAGACAGATTCTC+CGG | + | chr2_4:15085249-15085268 | Msa0317390:CDS | 45.0% | |
| GCAGCCTTGACAGATTGAAA+TGG | - | chr2_4:15085304-15085323 | None:intergenic | 45.0% | |
| CAATCTGTCAAGGCTGCTAT+TGG | + | chr2_4:15085307-15085326 | Msa0317390:CDS | 45.0% | |
| TTGGTGAAGTTCGTGTCAAC+CGG | + | chr2_4:15085335-15085354 | Msa0317390:CDS | 45.0% | |
| TTGTACCAGGAAGCAGATCA+TGG | + | chr2_4:15085461-15085480 | Msa0317390:intron | 45.0% | |
| CGTCAAAAACCTTGATGTCG+CGG | + | chr2_4:15085567-15085586 | Msa0317390:intron | 45.0% | |
| !! | CAGTTTTAACCGCGACATCA+AGG | - | chr2_4:15085579-15085598 | None:intergenic | 45.0% |
| TCTTCGAAGCAGGGTTATGA+TGG | - | chr2_4:15085619-15085638 | None:intergenic | 45.0% | |
| GATTGAATGCTTGGTCCCAA+AGG | + | chr2_4:15085637-15085656 | Msa0317390:intron | 45.0% | |
| GTGACTAACTAGCTACCATC+TGG | - | chr2_4:15085669-15085688 | None:intergenic | 45.0% | |
| AAAGGAGACTCAGCTTCTCT+TGG | + | chr2_4:15085995-15086014 | Msa0317390:CDS | 45.0% | |
| AGCGCTTATCGAGCTTGATA+AGG | + | chr2_4:15086079-15086098 | Msa0317390:CDS | 45.0% | |
| TCAGGCCAAAGAACTCGAAA+AGG | + | chr2_4:15086193-15086212 | Msa0317390:CDS | 45.0% | |
| !!! | TAGCGCCTTTTCGAGTTCTT+TGG | - | chr2_4:15086201-15086220 | None:intergenic | 45.0% |
| CGCTATCACAGAAAGCGATA+GGG | + | chr2_4:15086216-15086235 | Msa0317390:CDS | 45.0% | |
| AAGCGATAGGGTATGAAGCT+TGG | + | chr2_4:15086228-15086247 | Msa0317390:CDS | 45.0% | |
| ! | ACAAGACTTTGATGCCGCTT+TGG | + | chr2_4:15086337-15086356 | Msa0317390:CDS | 45.0% |
| AGCTTCACTGAGAAACCTTG+TGG | + | chr2_4:15086784-15086803 | Msa0317390:CDS | 45.0% | |
| CTGTCTTAAGCGAATCCACA+AGG | - | chr2_4:15086802-15086821 | None:intergenic | 45.0% | |
| TAAGGAGAAGGAACAAGGAG+CGG | + | chr2_4:15086856-15086875 | Msa0317390:CDS | 45.0% | |
| TTTGCTACCTTGTAGTTCGC+CGG | - | chr2_4:15086903-15086922 | None:intergenic | 45.0% | |
| AAGTTGTTGTCTGACGCACA+AGG | + | chr2_4:15087181-15087200 | Msa0317390:CDS | 45.0% | |
| TGTCAACACGATCTTACCAC+TGG | - | chr2_4:15087227-15087246 | None:intergenic | 45.0% | |
| GAGGACAGAAACAACTGCAA+TGG | + | chr2_4:15087303-15087322 | Msa0317390:CDS | 45.0% | |
| AGAAACAACTGCAATGGCTC+AGG | + | chr2_4:15087309-15087328 | Msa0317390:CDS | 45.0% | |
| AATCACTTTGGCTGTAGCGT+TGG | + | chr2_4:15087616-15087635 | Msa0317390:three_prime_UTR | 45.0% | |
| CACATCTGCACAATGTTGTG+TGG | - | chr2_4:15087747-15087766 | None:intergenic | 45.0% | |
| ACCGGAGAATCTGTCTCCTT+TGG | - | chr2_4:15085253-15085272 | None:intergenic | 50.0% | |
| AAAGGAGACAGATTCTCCGG+TGG | + | chr2_4:15085252-15085271 | Msa0317390:CDS | 50.0% | |
| AAGGAGACAGATTCTCCGGT+GGG | + | chr2_4:15085253-15085272 | Msa0317390:CDS | 50.0% | |
| TGGTGAAGTTCGTGTCAACC+GGG | + | chr2_4:15085336-15085355 | Msa0317390:CDS | 50.0% | |
| ACCATCTGGGTCATGCCTTT+GGG | - | chr2_4:15085655-15085674 | None:intergenic | 50.0% | |
| TACCATCTGGGTCATGCCTT+TGG | - | chr2_4:15085656-15085675 | None:intergenic | 50.0% | |
| GCGCTATCACAGAAAGCGAT+AGG | + | chr2_4:15086215-15086234 | Msa0317390:CDS | 50.0% | |
| !! | AGACTTTGATGCCGCTTTGG+AGG | + | chr2_4:15086340-15086359 | Msa0317390:CDS | 50.0% |
| AGCCAATTTCGCCTCCAAAG+CGG | - | chr2_4:15086354-15086373 | None:intergenic | 50.0% | |
| TTGGCTGCATTTCAGATGGC+AGG | + | chr2_4:15086368-15086387 | Msa0317390:CDS | 50.0% | |
| GCGTTCGGCGAAATTGAACT+CGG | + | chr2_4:15086400-15086419 | Msa0317390:CDS | 50.0% | |
| GCTCTTGCTGCAAACCTAAC+CGG | + | chr2_4:15086881-15086900 | Msa0317390:CDS | 50.0% | |
| AACCTAACCGGCGAACTACA+AGG | + | chr2_4:15086893-15086912 | Msa0317390:CDS | 50.0% | |
| ! | TACCTTGTAGTTCGCCGGTT+AGG | - | chr2_4:15086898-15086917 | None:intergenic | 50.0% |
| GTCTCCGTTTCTGATTCCAG+TGG | + | chr2_4:15087208-15087227 | Msa0317390:CDS | 50.0% | |
| AACAACTGCAATGGCTCAGG+TGG | + | chr2_4:15087312-15087331 | Msa0317390:CDS | 50.0% | |
| !! | CAGCAACAGATTTGGCTCTG+AGG | + | chr2_4:15087410-15087429 | Msa0317390:CDS | 50.0% |
| !! | TTCTAGCTCTGCAGCGAGAT+TGG | - | chr2_4:15087541-15087560 | None:intergenic | 50.0% |
| AGATTCTCCGGTGGGAGAGA+GGG | + | chr2_4:15085261-15085280 | Msa0317390:CDS | 55.0% | |
| TCAATCTCCCTCTCTCCCAC+CGG | - | chr2_4:15085271-15085290 | None:intergenic | 55.0% | |
| ! | TCCCAAAGGCATGACCCAGA+TGG | + | chr2_4:15085651-15085670 | Msa0317390:intron | 55.0% |
| !! | TGCCGCTTTGGAGGCGAAAT+TGG | + | chr2_4:15086349-15086368 | Msa0317390:CDS | 55.0% |
| !! | GGCTCTGAGGAATGCAGAGA+TGG | + | chr2_4:15087423-15087442 | Msa0317390:CDS | 55.0% |
| CAGATTCTCCGGTGGGAGAG+AGG | + | chr2_4:15085260-15085279 | Msa0317390:CDS | 60.0% | |
| TGCGGCCATGATCTGCTTCC+TGG | - | chr2_4:15085469-15085488 | None:intergenic | 60.0% | |
| GGCAGGAGAAGCTCAGCGTT+CGG | + | chr2_4:15086385-15086404 | Msa0317390:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 15084805 | 15087911 | 15084805 | ID=Msa0317390;Name=Msa0317390 |
| chr2_4 | mRNA | 15084805 | 15087911 | 15084805 | ID=Msa0317390-mRNA-1;Parent=Msa0317390;Name=Msa0317390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=314|1|1|1|0.5|0.66|3|353|581 |
| chr2_4 | exon | 15084805 | 15085086 | 15084805 | ID=Msa0317390-mRNA-1:exon:5605;Parent=Msa0317390-mRNA-1 |
| chr2_4 | exon | 15085191 | 15085393 | 15085191 | ID=Msa0317390-mRNA-1:exon:5606;Parent=Msa0317390-mRNA-1 |
| chr2_4 | exon | 15085984 | 15087911 | 15085984 | ID=Msa0317390-mRNA-1:exon:5607;Parent=Msa0317390-mRNA-1 |
| chr2_4 | five_prime_UTR | 15084805 | 15085086 | 15084805 | ID=Msa0317390-mRNA-1:five_prime_utr;Parent=Msa0317390-mRNA-1 |
| chr2_4 | five_prime_UTR | 15085191 | 15085222 | 15085191 | ID=Msa0317390-mRNA-1:five_prime_utr;Parent=Msa0317390-mRNA-1 |
| chr2_4 | CDS | 15085223 | 15085393 | 15085223 | ID=Msa0317390-mRNA-1:cds;Parent=Msa0317390-mRNA-1 |
| chr2_4 | CDS | 15085984 | 15087558 | 15085984 | ID=Msa0317390-mRNA-1:cds;Parent=Msa0317390-mRNA-1 |
| chr2_4 | three_prime_UTR | 15087559 | 15087911 | 15087559 | ID=Msa0317390-mRNA-1:three_prime_utr;Parent=Msa0317390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
