Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109500 | XP_013467026.1 | 96.829 | 473 | 12 | 2 | 1 | 472 | 1 | 471 | 0.0 | 929 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109500 | sp|Q8W4K5|VAB_ARATH | 62.979 | 470 | 152 | 11 | 13 | 469 | 30 | 490 | 1.11e-142 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109500 | A0A072VHG4 | 96.829 | 473 | 12 | 2 | 1 | 472 | 1 | 471 | 0.0 | 929 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064560 | Msa0109500 | 0.902124 | 1.335787e-78 | -8.615850e-47 |
| Msa0109500 | Msa0313410 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0109500 | Msa0435460 | 0.817668 | 2.926839e-52 | -8.615850e-47 |
| Msa0109500 | Msa0465950 | 0.812799 | 3.535029e-51 | -8.615850e-47 |
| Msa0109500 | Msa0514240 | 0.803013 | 4.267920e-49 | -8.615850e-47 |
| Msa0109500 | Msa0866760 | 0.813034 | 3.139337e-51 | -8.615850e-47 |
| Msa0109500 | Msa1040120 | 0.827721 | 1.337617e-54 | -8.615850e-47 |
| Msa0109500 | Msa1069310 | 0.816578 | 5.145573e-52 | -8.615850e-47 |
| Msa0109500 | Msa1083410 | 0.843686 | 1.202652e-58 | -8.615850e-47 |
| Msa0109500 | Msa1128160 | 0.845826 | 3.187091e-59 | -8.615850e-47 |
| Msa0109500 | Msa1165360 | 0.846494 | 2.097401e-59 | -8.615850e-47 |
| Msa0109500 | Msa1222970 | 0.809840 | 1.550634e-50 | -8.615850e-47 |
| Msa0109500 | Msa1228210 | 0.842936 | 1.907305e-58 | -8.615850e-47 |
| Msa0109500 | Msa1242230 | 0.811623 | 6.382785e-51 | -8.615850e-47 |
| Msa0109500 | Msa1242240 | 0.806481 | 8.055060e-50 | -8.615850e-47 |
| Msa0109500 | Msa1271280 | 0.833504 | 5.135067e-56 | -8.615850e-47 |
| Msa0109500 | Msa1271300 | 0.823775 | 1.154913e-53 | -8.615850e-47 |
| Msa0109500 | Msa1283860 | 0.811260 | 7.652044e-51 | -8.615850e-47 |
| Msa0109500 | Msa1284260 | 0.814037 | 1.888707e-51 | -8.615850e-47 |
| Msa0109500 | Msa1322860 | 0.807147 | 5.824429e-50 | -8.615850e-47 |
| Msa0109500 | Msa1322890 | 0.808927 | 2.435016e-50 | -8.615850e-47 |
| Msa0109500 | Msa1327050 | 0.813363 | 2.658031e-51 | -8.615850e-47 |
| Msa0109500 | Msa1367080 | 0.801551 | 8.534875e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109500 | MtrunA17_Chr1g0166381 | 96.617 | 473 | 12 | 3 | 1 | 472 | 1 | 470 | 0.0 | 922 |
| Msa0109500 | MtrunA17_Chr1g0204831 | 69.628 | 484 | 104 | 10 | 1 | 470 | 1 | 455 | 1.42e-173 | 495 |
| Msa0109500 | MtrunA17_Chr7g0260211 | 63.617 | 470 | 144 | 9 | 11 | 468 | 18 | 472 | 6.82e-162 | 466 |
| Msa0109500 | MtrunA17_Chr1g0185201 | 66.525 | 469 | 134 | 11 | 13 | 469 | 26 | 483 | 2.10e-161 | 465 |
| Msa0109500 | MtrunA17_Chr3g0140081 | 38.359 | 451 | 192 | 12 | 20 | 464 | 1 | 371 | 3.47e-62 | 206 |
| Msa0109500 | MtrunA17_Chr4g0019631 | 48.855 | 262 | 98 | 5 | 168 | 420 | 63 | 297 | 1.16e-49 | 171 |
| Msa0109500 | MtrunA17_Chr5g0399391 | 37.793 | 299 | 144 | 6 | 170 | 459 | 113 | 378 | 6.73e-46 | 164 |
| Msa0109500 | MtrunA17_Chr4g0073191 | 33.108 | 296 | 153 | 7 | 170 | 462 | 146 | 399 | 2.37e-15 | 77.8 |
| Msa0109500 | MtrunA17_Chr7g0260231 | 78.788 | 33 | 7 | 0 | 436 | 468 | 15 | 47 | 4.36e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109500 | AT4G14740.1 | 69.182 | 477 | 129 | 6 | 1 | 465 | 1 | 471 | 0.0 | 580 |
| Msa0109500 | AT4G14740.2 | 69.182 | 477 | 129 | 6 | 1 | 465 | 1 | 471 | 0.0 | 580 |
| Msa0109500 | AT3G22810.1 | 69.672 | 488 | 113 | 10 | 1 | 470 | 1 | 471 | 0.0 | 577 |
| Msa0109500 | AT5G43870.1 | 63.866 | 476 | 126 | 10 | 6 | 468 | 10 | 452 | 8.49e-174 | 496 |
| Msa0109500 | AT4G14740.4 | 68.523 | 413 | 112 | 6 | 1 | 401 | 1 | 407 | 2.14e-165 | 473 |
| Msa0109500 | AT3G22810.2 | 68.974 | 419 | 95 | 10 | 1 | 401 | 1 | 402 | 6.69e-160 | 459 |
| Msa0109500 | AT4G14740.3 | 74.006 | 327 | 78 | 3 | 144 | 465 | 8 | 332 | 6.08e-146 | 421 |
| Msa0109500 | AT3G22810.3 | 74.695 | 328 | 73 | 3 | 150 | 470 | 9 | 333 | 2.07e-145 | 419 |
| Msa0109500 | AT3G63300.1 | 62.979 | 470 | 152 | 11 | 13 | 469 | 30 | 490 | 1.13e-143 | 421 |
| Msa0109500 | AT5G43870.2 | 63.325 | 409 | 104 | 10 | 6 | 401 | 10 | 385 | 6.89e-132 | 387 |
| Msa0109500 | AT3G63300.2 | 69.872 | 312 | 86 | 4 | 159 | 469 | 28 | 332 | 1.33e-103 | 313 |
| Msa0109500 | AT4G32780.1 | 38.344 | 459 | 174 | 14 | 13 | 460 | 35 | 395 | 7.88e-45 | 162 |
| Msa0109500 | AT4G32780.2 | 38.344 | 459 | 174 | 14 | 13 | 460 | 54 | 414 | 1.46e-44 | 162 |
| Msa0109500 | AT4G17350.1 | 39.667 | 300 | 140 | 8 | 170 | 459 | 115 | 383 | 2.36e-43 | 158 |
| Msa0109500 | AT5G47440.1 | 37.979 | 287 | 146 | 5 | 178 | 461 | 131 | 388 | 1.43e-39 | 147 |
| Msa0109500 | AT4G16670.1 | 35.906 | 298 | 162 | 5 | 170 | 459 | 132 | 408 | 7.67e-38 | 143 |
| Msa0109500 | AT4G16670.2 | 39.749 | 239 | 116 | 4 | 170 | 400 | 132 | 350 | 1.38e-30 | 122 |
| Msa0109500 | AT4G16670.3 | 35.448 | 268 | 116 | 5 | 170 | 400 | 132 | 379 | 7.37e-25 | 106 |
| Msa0109500 | AT5G57770.1 | 38.525 | 244 | 114 | 6 | 170 | 410 | 128 | 338 | 2.55e-20 | 93.2 |
| Msa0109500 | AT5G57770.2 | 36.177 | 293 | 137 | 8 | 122 | 394 | 63 | 325 | 8.97e-20 | 90.9 |
Find 149 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATATTCCAAACTTCTTTA+AGG | 0.144092 | 1_3:+21495199 | None:intergenic |
| GATTCTTCTACTTCTGCTTT+AGG | 0.147149 | 1_3:-21493008 | Msa0109500:three_prime_UTR |
| TGAGAGGAAGCAAAAGAAAA+AGG | 0.166140 | 1_3:+21497805 | None:intergenic |
| ATTGGGTCACGAGGTGTTTC+TGG | 0.168206 | 1_3:+21498000 | None:intergenic |
| GAGTCTATTATAACTGTTTC+TGG | 0.188381 | 1_3:-21497832 | Msa0109500:CDS |
| CATGCTGCTGTTTCGGTTGC+TGG | 0.188711 | 1_3:-21495754 | Msa0109500:CDS |
| TCAAACTTCTCAAATGGTTT+TGG | 0.205061 | 1_3:-21497785 | Msa0109500:CDS |
| ATTAACTATAAACATGTTAT+AGG | 0.266317 | 1_3:-21493506 | Msa0109500:three_prime_UTR |
| ATTCTTCTACTTCTGCTTTA+GGG | 0.283425 | 1_3:-21493007 | Msa0109500:three_prime_UTR |
| TGCACCTGAAGAAAATTTCT+TGG | 0.293086 | 1_3:-21495070 | Msa0109500:CDS |
| AATATTCCAAACTTCTTTAA+GGG | 0.302087 | 1_3:+21495200 | None:intergenic |
| AATTCCTGTGGAGAAGAATT+TGG | 0.302301 | 1_3:-21495169 | Msa0109500:CDS |
| TCTAAACATCAACACCAAAA+TGG | 0.303422 | 1_3:-21498055 | Msa0109500:exon |
| GGAGAGGAAGGAAAAGAAAA+AGG | 0.308251 | 1_3:-21495806 | Msa0109500:CDS |
| GATAGTCTTCCTGATGTTCT+TGG | 0.310186 | 1_3:+21497255 | None:intergenic |
| GCCGCAACTGCTGCTTCGTC+AGG | 0.322180 | 1_3:-21495703 | Msa0109500:CDS |
| CAAGGGCCCTTAAAGAAGTT+TGG | 0.334393 | 1_3:-21495206 | Msa0109500:CDS |
| TGGAATTCTTGTCACGTTCA+TGG | 0.356920 | 1_3:-21497978 | Msa0109500:CDS |
| GCCACCGGCGGTGGCGGAGG+CGG | 0.357360 | 1_3:-21495856 | Msa0109500:CDS |
| GAGGGAAGACGGTGGGGAGG+TGG | 0.359935 | 1_3:-21495834 | Msa0109500:CDS |
| TCTACAGAAAATCATTGTTA+TGG | 0.364437 | 1_3:-21493030 | Msa0109500:three_prime_UTR |
| ACCAGTTTCACCTTCTGAAA+TGG | 0.365421 | 1_3:-21497190 | Msa0109500:CDS |
| TGTTGAGGCTGCTGAGGCTA+TGG | 0.367362 | 1_3:-21495605 | Msa0109500:CDS |
| TCAGCTCCATGCTGCTGTTT+CGG | 0.370761 | 1_3:-21495761 | Msa0109500:CDS |
| ACCGGCGGTGGCGGAGGCGG+AGG | 0.377516 | 1_3:-21495853 | Msa0109500:CDS |
| GTCTCTGCCACCGGCGGTGG+CGG | 0.378739 | 1_3:-21495862 | Msa0109500:CDS |
| TTCTGAAATGGATGATTTCA+AGG | 0.395872 | 1_3:-21497178 | Msa0109500:intron |
| TTGGGTCACGAGGTGTTTCT+GGG | 0.401162 | 1_3:+21498001 | None:intergenic |
| GAAAGAGGAGGGAGTTGAGC+TGG | 0.402468 | 1_3:+21497919 | None:intergenic |
| TCCATTTCAGAAGGTGAAAC+TGG | 0.405672 | 1_3:+21497189 | None:intergenic |
| TTCGCCACTGAAGCTACTAT+TGG | 0.406875 | 1_3:+21495095 | None:intergenic |
| GTGGGTCTCTTTAATCTTGG+AGG | 0.415326 | 1_3:-21493369 | Msa0109500:three_prime_UTR |
| GAAGTGGGTCTCTTTAATCT+TGG | 0.429849 | 1_3:-21493372 | Msa0109500:three_prime_UTR |
| TTGAGCTGGAGACAAAGCTT+TGG | 0.431363 | 1_3:+21497933 | None:intergenic |
| TTCCTCTCAAACTTCTCAAA+TGG | 0.431509 | 1_3:-21497791 | Msa0109500:CDS |
| AAAGAAATGCCGGCTTGGCC+TGG | 0.432592 | 1_3:-21493703 | Msa0109500:CDS |
| GCACCTGAAGAAAATTTCTT+GGG | 0.433850 | 1_3:-21495069 | Msa0109500:CDS |
| ATGGTAATGGTAATGGTGGT+GGG | 0.434293 | 1_3:-21495140 | Msa0109500:CDS |
| CTTAAAACAAAAGAATTCCT+TGG | 0.434682 | 1_3:+21493061 | None:intergenic |
| GTTGAGGCTGCTGAGGCTAT+GGG | 0.435850 | 1_3:-21495604 | Msa0109500:CDS |
| GTTATTATGCTAGAAGATAG+TGG | 0.437177 | 1_3:-21493394 | Msa0109500:three_prime_UTR |
| TGTGGACTCAAGGTGTTTCA+AGG | 0.439083 | 1_3:-21493576 | Msa0109500:CDS |
| AATGGTAATGGTAATGGTGG+TGG | 0.445582 | 1_3:-21495141 | Msa0109500:CDS |
| TGCTTTCAGGTGAACTCCAT+TGG | 0.445858 | 1_3:-21494389 | Msa0109500:intron |
| GTCACGAGGTGTTTCTGGGT+CGG | 0.446288 | 1_3:+21498005 | None:intergenic |
| TCTGCCACCGGCGGTGGCGG+AGG | 0.450077 | 1_3:-21495859 | Msa0109500:CDS |
| TTAAAACAAAAGAATTCCTT+GGG | 0.450665 | 1_3:+21493062 | None:intergenic |
| TCACGAGGTGTTTCTGGGTC+GGG | 0.454736 | 1_3:+21498006 | None:intergenic |
| TTTAAGAAGCTCACAGCCTC+TGG | 0.455219 | 1_3:+21495023 | None:intergenic |
| CCTGGACGTCACTTGCTAGA+AGG | 0.455426 | 1_3:-21493685 | Msa0109500:CDS |
| GCGGAGGGAAGACGGTGGGG+AGG | 0.464521 | 1_3:-21495837 | Msa0109500:CDS |
| CCCTCCGCCTCCGCCACCGC+CGG | 0.464687 | 1_3:+21495852 | None:intergenic |
| GAGGTGGCTGAAGGAGAGGA+AGG | 0.465983 | 1_3:-21495818 | Msa0109500:CDS |
| TTGAGTTTGTTTGAAAGAGG+AGG | 0.469011 | 1_3:+21497907 | None:intergenic |
| GAGAAGAATTTGGTAGGTAA+TGG | 0.471793 | 1_3:-21495159 | Msa0109500:CDS |
| CCGGCGGTGGCGGAGGCGGA+GGG | 0.476107 | 1_3:-21495852 | Msa0109500:CDS |
| GAGGTATCTCCAAGAACATC+AGG | 0.477235 | 1_3:-21497264 | Msa0109500:CDS |
| TGGCGGAGGCGGAGGGAAGA+CGG | 0.479655 | 1_3:-21495845 | Msa0109500:CDS |
| TTGACGGCTGCTGCTGCGAC+AGG | 0.482568 | 1_3:-21495508 | Msa0109500:intron |
| ATGAAGAGTAGACATGTTGC+TGG | 0.483425 | 1_3:-21494067 | Msa0109500:CDS |
| GTAGGTAATGGTAATGGTAA+TGG | 0.484250 | 1_3:-21495147 | Msa0109500:CDS |
| AGAAGAAGAAGATGAAAGAG+TGG | 0.485086 | 1_3:+21498078 | None:intergenic |
| TTGTTGAGTTTGTTTGAAAG+AGG | 0.487700 | 1_3:+21497904 | None:intergenic |
| TGAGTTTGTTTGAAAGAGGA+GGG | 0.490544 | 1_3:+21497908 | None:intergenic |
| ATGCTAGAAGATAGTGGAAG+TGG | 0.491785 | 1_3:-21493388 | Msa0109500:three_prime_UTR |
| TGGGTCTCTTTAATCTTGGA+GGG | 0.491896 | 1_3:-21493368 | Msa0109500:three_prime_UTR |
| TTGATTGGATTTGGATCCCA+AGG | 0.495724 | 1_3:-21493078 | Msa0109500:three_prime_UTR |
| GACAGACATGGCGGTAGCAT+CGG | 0.497990 | 1_3:-21495653 | Msa0109500:CDS |
| GAGGCGGAGGGAAGACGGTG+GGG | 0.498373 | 1_3:-21495840 | Msa0109500:CDS |
| AGAGTCTCTGCCACCGGCGG+TGG | 0.498489 | 1_3:-21495865 | Msa0109500:CDS |
| CCATGTTCATAGTTAACATA+AGG | 0.501641 | 1_3:+21493481 | None:intergenic |
| TTGAATTCGTAGCATTGCGT+GGG | 0.502451 | 1_3:-21495245 | Msa0109500:intron |
| GGTGACAACCGTCGTTACTT+TGG | 0.503924 | 1_3:-21493661 | Msa0109500:CDS |
| TCCGCCTCCGCCACCGCCGG+TGG | 0.505322 | 1_3:+21495855 | None:intergenic |
| TTTGAATTCGTAGCATTGCG+TGG | 0.505388 | 1_3:-21495246 | Msa0109500:intron |
| GCGTGGGGCTGCAACATTGA+AGG | 0.507167 | 1_3:-21495229 | Msa0109500:CDS |
| GGTAGCATCGGCTGCCACAT+TGG | 0.507427 | 1_3:-21495641 | Msa0109500:CDS |
| CGGAGGCGGAGGGAAGACGG+TGG | 0.509388 | 1_3:-21495842 | Msa0109500:CDS |
| TTGAGGCTGCTGAGGCTATG+GGG | 0.510751 | 1_3:-21495603 | Msa0109500:CDS |
| GAACGTGACAAGAATTCCAT+TGG | 0.511728 | 1_3:+21497982 | None:intergenic |
| TGGGGAGGTGGCTGAAGGAG+AGG | 0.513502 | 1_3:-21495822 | Msa0109500:CDS |
| CACAGCAGTGGACCTCTGAA+TGG | 0.517311 | 1_3:-21497231 | Msa0109500:CDS |
| GACGGTGGGGAGGTGGCTGA+AGG | 0.519611 | 1_3:-21495827 | Msa0109500:CDS |
| TGAGCGTGATCACCTCGCTT+CGG | 0.520285 | 1_3:-21495578 | Msa0109500:CDS |
| GGAGGCGGAGGGAAGACGGT+GGG | 0.523154 | 1_3:-21495841 | Msa0109500:CDS |
| CCTACCAAATTCTTCTCCAC+AGG | 0.525363 | 1_3:+21495165 | None:intergenic |
| CTTCTTAAACGCACTCGCAC+AGG | 0.525523 | 1_3:-21495009 | Msa0109500:intron |
| GCCGTGAATGTGAGGTCTGC+CGG | 0.525794 | 1_3:-21495544 | Msa0109500:CDS |
| TTCATGGTCTGCTTCTGCCA+TGG | 0.527044 | 1_3:-21497962 | Msa0109500:CDS |
| TTATCAAAGAAATGCCGGCT+TGG | 0.527997 | 1_3:-21493708 | Msa0109500:CDS |
| TGTTGTGATTGTTGCTTGAA+CGG | 0.529425 | 1_3:+21495923 | None:intergenic |
| GGGCTGCAACATTGAAGGCA+AGG | 0.533544 | 1_3:-21495224 | Msa0109500:CDS |
| TGGCGTTATCAAAGAAATGC+CGG | 0.537650 | 1_3:-21493713 | Msa0109500:CDS |
| TGAGGCTGCTGAGGCTATGG+GGG | 0.541052 | 1_3:-21495602 | Msa0109500:CDS |
| GCCGGCAGACCTCACATTCA+CGG | 0.544455 | 1_3:+21495543 | None:intergenic |
| TAAATCTGTTGATACATGGT+GGG | 0.546492 | 1_3:-21493456 | Msa0109500:three_prime_UTR |
| CAAAGCTTTGGAGACTTCCA+TGG | 0.548578 | 1_3:+21497945 | None:intergenic |
| CGGCGATATTCAAACGTTGA+CGG | 0.551122 | 1_3:-21495524 | Msa0109500:CDS |
| CCTTATGTTAACTATGAACA+TGG | 0.554938 | 1_3:-21493481 | Msa0109500:three_prime_UTR |
| GGCTGCAATAGCCGCAACAG+CGG | 0.560843 | 1_3:+21495723 | None:intergenic |
| CCTTCTAGCAAGTGACGTCC+AGG | 0.563097 | 1_3:+21493685 | None:intergenic |
| TTGAAATCATCCATTTCAGA+AGG | 0.569576 | 1_3:+21497180 | None:intergenic |
| AACGTGACAAGAATTCCATT+GGG | 0.572460 | 1_3:+21497983 | None:intergenic |
| ACCTGACGAAGCAGCAGTTG+CGG | 0.576149 | 1_3:+21495702 | None:intergenic |
| AAGTGACGTCCAGGCCAAGC+CGG | 0.581177 | 1_3:+21493694 | None:intergenic |
| GGATCGTATCATGTCTCACT+CGG | 0.582016 | 1_3:-21497764 | Msa0109500:intron |
| AAGTATAGCAGCATTTGAAG+AGG | 0.585192 | 1_3:+21497879 | None:intergenic |
| GGTAATGGTAATGGTGGTGG+GGG | 0.586229 | 1_3:-21495138 | Msa0109500:CDS |
| TTATCTCTATTGCTGCTGAA+AGG | 0.588258 | 1_3:-21493552 | Msa0109500:CDS |
| GGCTGCAACATTGAAGGCAA+GGG | 0.588562 | 1_3:-21495223 | Msa0109500:CDS |
| TGCTCGTAAAGACGAGCAGA+TGG | 0.589082 | 1_3:-21495680 | Msa0109500:CDS |
| CCTGTGGAGAAGAATTTGGT+AGG | 0.590190 | 1_3:-21495165 | Msa0109500:CDS |
| TCAATGTGTTGAGGCTGCTG+AGG | 0.594159 | 1_3:-21495611 | Msa0109500:CDS |
| AATTTGGTAGGTAATGGTAA+TGG | 0.595486 | 1_3:-21495153 | Msa0109500:CDS |
| CGTCAACGTTTGAATATCGC+CGG | 0.596146 | 1_3:+21495525 | None:intergenic |
| AACCATTTGAGAAGTTTGAG+AGG | 0.597240 | 1_3:+21497789 | None:intergenic |
| ATCAAAGAGAATATGATGTG+TGG | 0.600476 | 1_3:-21493594 | Msa0109500:CDS |
| CGGTGGCAGAGACTCTGTAA+TGG | 0.602908 | 1_3:+21495872 | None:intergenic |
| AAATCTGTTGATACATGGTG+GGG | 0.603647 | 1_3:-21493455 | Msa0109500:three_prime_UTR |
| TACAGAGTCTCTGCCACCGG+CGG | 0.605030 | 1_3:-21495868 | Msa0109500:CDS |
| CATTACAGAGTCTCTGCCAC+CGG | 0.605075 | 1_3:-21495871 | Msa0109500:CDS |
| GAATATGATGTGTGGACTCA+AGG | 0.605562 | 1_3:-21493586 | Msa0109500:CDS |
| AGAAACACCTCGTGACCCAA+TGG | 0.606803 | 1_3:-21497998 | Msa0109500:CDS |
| TGGAGTTGCAGCCGCTGTTG+CGG | 0.611144 | 1_3:-21495734 | Msa0109500:CDS |
| TGGTAATGGTAATGGTGGTG+GGG | 0.612875 | 1_3:-21495139 | Msa0109500:CDS |
| GGTAGCTGCTCAATGTGTTG+AGG | 0.614316 | 1_3:-21495620 | Msa0109500:CDS |
| GGTAATGGTAATGGTAATGG+TGG | 0.614443 | 1_3:-21495144 | Msa0109500:CDS |
| TGCTAGAAGATAGTGGAAGT+GGG | 0.615675 | 1_3:-21493387 | Msa0109500:three_prime_UTR |
| AGCTCCAATAGTAGCTTCAG+TGG | 0.618065 | 1_3:-21495099 | Msa0109500:CDS |
| GCGTGATCACCTCGCTTCGG+TGG | 0.622627 | 1_3:-21495575 | Msa0109500:CDS |
| AAGAATTCCATTGGGTCACG+AGG | 0.624678 | 1_3:+21497991 | None:intergenic |
| TTAGCTCTGCCGTGAATGTG+AGG | 0.625902 | 1_3:-21495552 | Msa0109500:CDS |
| CAGCAACCGAAACAGCAGCA+TGG | 0.630431 | 1_3:+21495755 | None:intergenic |
| TGAAGAGTAGACATGTTGCT+GGG | 0.634135 | 1_3:-21494066 | Msa0109500:CDS |
| ATTTCAGAAGGTGAAACTGG+TGG | 0.639220 | 1_3:+21497192 | None:intergenic |
| TATTGCTGCTGTAATTCCTG+TGG | 0.643534 | 1_3:-21495181 | Msa0109500:CDS |
| AGTAGAGAATTGCTTGCCAG+AGG | 0.646238 | 1_3:-21495039 | Msa0109500:CDS |
| TTATATAAACAGAATGAACC+AGG | 0.647298 | 1_3:-21494352 | Msa0109500:intron |
| CAGAGCTAACCACCGAAGCG+AGG | 0.648144 | 1_3:+21495566 | None:intergenic |
| TCTGTTAAAGATCCATTCAG+AGG | 0.654153 | 1_3:+21497219 | None:intergenic |
| GCAGATGGCGAAGACAGACA+TGG | 0.655202 | 1_3:-21495665 | Msa0109500:CDS |
| TGAATTCGTAGCATTGCGTG+GGG | 0.663115 | 1_3:-21495244 | Msa0109500:intron |
| GGACGTCACTTGCTAGAAGG+TGG | 0.663656 | 1_3:-21493682 | Msa0109500:CDS |
| GGTATAAATCTGTTGATACA+TGG | 0.673759 | 1_3:-21493460 | Msa0109500:three_prime_UTR |
| GGAAGACTATCACACAGCAG+TGG | 0.682507 | 1_3:-21497243 | Msa0109500:CDS |
| GGTTTGAAAACAATAACGCG+TGG | 0.695099 | 1_3:-21493640 | Msa0109500:CDS |
| ATAAATCTGTTGATACATGG+TGG | 0.747959 | 1_3:-21493457 | Msa0109500:three_prime_UTR |
| ACATTGAGCAGCTACCAATG+TGG | 0.752177 | 1_3:+21495627 | None:intergenic |
| GATGGCGAAGACAGACATGG+CGG | 0.768845 | 1_3:-21495662 | Msa0109500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGTAAAATTATAATCAA+TGG | + | chr1_3:21494212-21494231 | None:intergenic | 10.0% |
| !! | ATACATACATAATTTATTAA+TGG | - | chr1_3:21495025-21495044 | Msa0109500:CDS | 10.0% |
| !!! | TTTTATGTATTTTTTTTGAA+TGG | - | chr1_3:21497670-21497689 | Msa0109500:intron | 10.0% |
| !! | TAAAATACTATATGCAAAAA+TGG | + | chr1_3:21493282-21493301 | None:intergenic | 15.0% |
| !!! | TTTAAAATTCAAGTTATGTT+TGG | + | chr1_3:21494120-21494139 | None:intergenic | 15.0% |
| !!! | TTGAAAATTTTCACTTTTAA+AGG | + | chr1_3:21494572-21494591 | None:intergenic | 15.0% |
| !!! | TATAGTTGTTGATTAATTTA+TGG | - | chr1_3:21495724-21495743 | Msa0109500:CDS | 15.0% |
| !!! | ATGAATTGATTTAGTAAAAT+TGG | - | chr1_3:21496029-21496048 | Msa0109500:intron | 15.0% |
| !!! | ATATTTAAAATTGAACTGAA+TGG | - | chr1_3:21496054-21496073 | Msa0109500:intron | 15.0% |
| !!! | TAAATTTTTTGTTTTTCAGT+TGG | - | chr1_3:21496464-21496483 | Msa0109500:intron | 15.0% |
| !! | ATAATTGAAATGAAAAGAAA+AGG | + | chr1_3:21496697-21496716 | None:intergenic | 15.0% |
| !! | ATTAAAACTCTTATAATTGA+TGG | + | chr1_3:21496760-21496779 | None:intergenic | 15.0% |
| !!! | TTATTCTTTAAACTTTGAAA+TGG | - | chr1_3:21497085-21497104 | Msa0109500:intron | 15.0% |
| !! | ATTAACTATAAACATGTTAT+AGG | - | chr1_3:21497496-21497515 | Msa0109500:intron | 15.0% |
| !!! | TTTTGATCTATTTGTAAAAA+GGG | - | chr1_3:21497570-21497589 | Msa0109500:intron | 15.0% |
| !!! | TGTTTAAATTTTCCTAAAAA+AGG | - | chr1_3:21498024-21498043 | Msa0109500:CDS | 15.0% |
| !!! | GTTTAAATTTTCCTAAAAAA+GGG | - | chr1_3:21498025-21498044 | Msa0109500:CDS | 15.0% |
| !!! | GATTTTGATGTAAAATAATT+TGG | - | chr1_3:21498047-21498066 | Msa0109500:exon | 15.0% |
| !!! | TTTGTTTTGTTTTTCCATTT+TGG | + | chr1_3:21492964-21492983 | None:intergenic | 20.0% |
| !! | AAAAACAAAACAAACAACAA+TGG | - | chr1_3:21492970-21492989 | Msa0109500:three_prime_UTR | 20.0% |
| !! | TACATCTTTCTTAATTTCAT+AGG | - | chr1_3:21493851-21493870 | Msa0109500:intron | 20.0% |
| !!! | TTGTTTTTCTCAAAACTTTT+TGG | - | chr1_3:21493932-21493951 | Msa0109500:intron | 20.0% |
| !!! | TGTTTTTCTCAAAACTTTTT+GGG | - | chr1_3:21493933-21493952 | Msa0109500:intron | 20.0% |
| !!! | TCCAAATTAGCTTTAATTAA+AGG | - | chr1_3:21494269-21494288 | Msa0109500:intron | 20.0% |
| !!! | CCAAATTAGCTTTAATTAAA+GGG | - | chr1_3:21494270-21494289 | Msa0109500:intron | 20.0% |
| !! | CTATAATTACACATAAAAGA+GGG | + | chr1_3:21494601-21494620 | None:intergenic | 20.0% |
| !! | ACTATAATTACACATAAAAG+AGG | + | chr1_3:21494602-21494621 | None:intergenic | 20.0% |
| !!! | GCTGTTTTATTTTTTGTAAA+GGG | + | chr1_3:21494627-21494646 | None:intergenic | 20.0% |
| !!! | TGCTGTTTTATTTTTTGTAA+AGG | + | chr1_3:21494628-21494647 | None:intergenic | 20.0% |
| !!! | TTTTTGTGATATATATTGGT+GGG | + | chr1_3:21494950-21494969 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGATATATATTGG+TGG | + | chr1_3:21494951-21494970 | None:intergenic | 20.0% |
| !!! | GCATTTTTTGTGATATATAT+TGG | + | chr1_3:21494954-21494973 | None:intergenic | 20.0% |
| !! | GATGCAAATAAATCATAAAA+AGG | - | chr1_3:21495551-21495570 | Msa0109500:CDS | 20.0% |
| !! | AGAAAGGAAAAAAAAAACAA+TGG | - | chr1_3:21495687-21495706 | Msa0109500:CDS | 20.0% |
| !! | AATATTCCAAACTTCTTTAA+GGG | + | chr1_3:21495805-21495824 | None:intergenic | 20.0% |
| !!! | GAATTTTAGTCTTGTATTTA+GGG | + | chr1_3:21496103-21496122 | None:intergenic | 20.0% |
| !!! | TGAATTTTAGTCTTGTATTT+AGG | + | chr1_3:21496104-21496123 | None:intergenic | 20.0% |
| !!! | TCTAATTTGAAACTAGAATT+CGG | + | chr1_3:21496145-21496164 | None:intergenic | 20.0% |
| !!! | AAACTAATTTTGACATCTTT+TGG | + | chr1_3:21496205-21496224 | None:intergenic | 20.0% |
| !!! | ATCATTTTTGCTTTTTTCAA+TGG | - | chr1_3:21496237-21496256 | Msa0109500:intron | 20.0% |
| !!! | AAAAGCATAGAGTATATAAT+GGG | + | chr1_3:21496498-21496517 | None:intergenic | 20.0% |
| !!! | GTGTTTCTTTTTATGTTTAA+AGG | - | chr1_3:21496565-21496584 | Msa0109500:intron | 20.0% |
| !! | AATTCTCAAATATATATACC+TGG | + | chr1_3:21496671-21496690 | None:intergenic | 20.0% |
| !! | TTATCATACTTTAACTGATT+TGG | - | chr1_3:21497018-21497037 | Msa0109500:intron | 20.0% |
| !!! | GTTTTGATCTATTTGTAAAA+AGG | - | chr1_3:21497569-21497588 | Msa0109500:intron | 20.0% |
| !!! | TTTTCTTTCTTTCATTGATA+TGG | - | chr1_3:21497743-21497762 | Msa0109500:intron | 20.0% |
| !! | TTAAAACAAAAGAATTCCTT+GGG | + | chr1_3:21497943-21497962 | None:intergenic | 20.0% |
| !! | GTGACAAAAAATGGAATTTT+GGG | + | chr1_3:21493544-21493563 | None:intergenic | 25.0% |
| !! | AGTGACAAAAAATGGAATTT+TGG | + | chr1_3:21493545-21493564 | None:intergenic | 25.0% |
| ! | AATTTGGAAGTGACAAAAAA+TGG | + | chr1_3:21493553-21493572 | None:intergenic | 25.0% |
| ! | TAAAACCTTGGATACAAATT+TGG | + | chr1_3:21493569-21493588 | None:intergenic | 25.0% |
| ! | TGTGATTCTTTGTAATATCA+AGG | + | chr1_3:21493617-21493636 | None:intergenic | 25.0% |
| ! | ATCTTTCTTAATTTCATAGG+TGG | - | chr1_3:21493854-21493873 | Msa0109500:intron | 25.0% |
| ! | TGTTACCAACAAACATAAAT+TGG | - | chr1_3:21494029-21494048 | Msa0109500:intron | 25.0% |
| ! | AGTGCTAAAAACAAAAACTT+TGG | + | chr1_3:21494187-21494206 | None:intergenic | 25.0% |
| ! | ACTGTTCAATATGTTCTTTA+AGG | + | chr1_3:21494248-21494267 | None:intergenic | 25.0% |
| ! | CCCTTTAATTAAAGCTAATT+TGG | + | chr1_3:21494273-21494292 | None:intergenic | 25.0% |
| ! | CTTAACGATTTGATTCTTAA+TGG | + | chr1_3:21494504-21494523 | None:intergenic | 25.0% |
| ! | AAAACCATGTTTATCCATAA+GGG | + | chr1_3:21494820-21494839 | None:intergenic | 25.0% |
| ! | AAAAACCATGTTTATCCATA+AGG | + | chr1_3:21494821-21494840 | None:intergenic | 25.0% |
| ! | AGCAATAACAAACTTTGTAT+TGG | + | chr1_3:21494855-21494874 | None:intergenic | 25.0% |
| !! | TGACTGACTTAAATAAAGAA+AGG | - | chr1_3:21495671-21495690 | Msa0109500:CDS | 25.0% |
| ! | AAGGAAAAAAAAAACAATGG+TGG | - | chr1_3:21495690-21495709 | Msa0109500:CDS | 25.0% |
| ! | TGATTAATTTATGGTGTTTG+TGG | - | chr1_3:21495733-21495752 | Msa0109500:CDS | 25.0% |
| ! | CAATATTCCAAACTTCTTTA+AGG | + | chr1_3:21495806-21495825 | None:intergenic | 25.0% |
| ! | AAATTGAACTGAATGGAAAA+TGG | - | chr1_3:21496061-21496080 | Msa0109500:intron | 25.0% |
| !!! | ATTTTTGCTTTTTTCAATGG+TGG | - | chr1_3:21496240-21496259 | Msa0109500:intron | 25.0% |
| ! | ATTGTTTCCTAAGTTATTAC+CGG | - | chr1_3:21496372-21496391 | Msa0109500:intron | 25.0% |
| !! | CTTCTCAGTATATGTTTTAT+TGG | - | chr1_3:21496431-21496450 | Msa0109500:intron | 25.0% |
| !! | CAAAAGCATAGAGTATATAA+TGG | + | chr1_3:21496499-21496518 | None:intergenic | 25.0% |
| !! | TTGTATGTGGATTAAAGAAA+AGG | - | chr1_3:21496516-21496535 | Msa0109500:intron | 25.0% |
| !! | TTGATTTGATAATTGCTTTC+AGG | - | chr1_3:21496600-21496619 | Msa0109500:intron | 25.0% |
| ! | TTATATAAACAGAATGAACC+AGG | - | chr1_3:21496650-21496669 | Msa0109500:intron | 25.0% |
| !! | ATAATTGATGGCCAAATAAT+TGG | + | chr1_3:21496748-21496767 | None:intergenic | 25.0% |
| ! | ACTACAATTTGTAGATTTCT+AGG | + | chr1_3:21496875-21496894 | None:intergenic | 25.0% |
| !!! | ACTCTTTTTCTTTTTTGTGA+TGG | + | chr1_3:21496963-21496982 | None:intergenic | 25.0% |
| ! | TTAAAGTATGATAAGAGAAG+GGG | + | chr1_3:21497012-21497031 | None:intergenic | 25.0% |
| ! | GTTAAAGTATGATAAGAGAA+GGG | + | chr1_3:21497013-21497032 | None:intergenic | 25.0% |
| ! | AGTTAAAGTATGATAAGAGA+AGG | + | chr1_3:21497014-21497033 | None:intergenic | 25.0% |
| !!! | AAACTTTGAAATGGATCAAA+AGG | - | chr1_3:21497094-21497113 | Msa0109500:intron | 25.0% |
| !! | AAATTTCAAAAAGCATGAGT+CGG | + | chr1_3:21497252-21497271 | None:intergenic | 25.0% |
| ! | CTTAAAACAAAAGAATTCCT+TGG | + | chr1_3:21497944-21497963 | None:intergenic | 25.0% |
| !!! | CAAGGAATTCTTTTGTTTTA+AGG | - | chr1_3:21497942-21497961 | Msa0109500:CDS | 25.0% |
| ! | TCTACAGAAAATCATTGTTA+TGG | - | chr1_3:21497972-21497991 | Msa0109500:CDS | 25.0% |
| !!! | TACATCAAAATCCCTTTTTT+AGG | + | chr1_3:21498039-21498058 | None:intergenic | 25.0% |
| TCTAAACATCAACACCAAAA+TGG | - | chr1_3:21492947-21492966 | Msa0109500:three_prime_UTR | 30.0% | |
| ! | TTGTTGAGTTTGTTTGAAAG+AGG | + | chr1_3:21493101-21493120 | None:intergenic | 30.0% |
| GAGTCTATTATAACTGTTTC+TGG | - | chr1_3:21493170-21493189 | Msa0109500:three_prime_UTR | 30.0% | |
| ! | TCAAACTTCTCAAATGGTTT+TGG | - | chr1_3:21493217-21493236 | Msa0109500:three_prime_UTR | 30.0% |
| ! | GCAACATCAATTTAAAACCT+TGG | + | chr1_3:21493581-21493600 | None:intergenic | 30.0% |
| TTGAAATCATCCATTTCAGA+AGG | + | chr1_3:21493825-21493844 | None:intergenic | 30.0% | |
| !! | TTCTGAAATGGATGATTTCA+AGG | - | chr1_3:21493824-21493843 | Msa0109500:intron | 30.0% |
| AAAAACCAAACAAACCAACA+TGG | + | chr1_3:21493913-21493932 | None:intergenic | 30.0% | |
| GTCATCCAATTTATGTTTGT+TGG | + | chr1_3:21494037-21494056 | None:intergenic | 30.0% | |
| ! | TACTGATTATTACTGTCTCT+GGG | + | chr1_3:21494061-21494080 | None:intergenic | 30.0% |
| ! | TTACTGATTATTACTGTCTC+TGG | + | chr1_3:21494062-21494081 | None:intergenic | 30.0% |
| ! | AAATTTAGAGTTCTCCCAAA+AGG | + | chr1_3:21494467-21494486 | None:intergenic | 30.0% |
| AGTCACAGCTTCATTAAAAT+TGG | - | chr1_3:21494681-21494700 | Msa0109500:intron | 30.0% | |
| !! | AATCAAAGGGTAATTTTGGT+TGG | + | chr1_3:21494716-21494735 | None:intergenic | 30.0% |
| ! | AAGGAATCAAAGGGTAATTT+TGG | + | chr1_3:21494720-21494739 | None:intergenic | 30.0% |
| TGGCTAAATAAGGAATCAAA+GGG | + | chr1_3:21494729-21494748 | None:intergenic | 30.0% | |
| ATGGCTAAATAAGGAATCAA+AGG | + | chr1_3:21494730-21494749 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTTTGTTTCCTTGA+TGG | + | chr1_3:21494749-21494768 | None:intergenic | 30.0% |
| GCAATTGCATTTATTGCTAA+TGG | - | chr1_3:21494792-21494811 | Msa0109500:intron | 30.0% | |
| AAACCATGTTTATCCATAAG+GGG | + | chr1_3:21494819-21494838 | None:intergenic | 30.0% | |
| TTGTTAGCTGTTACAACTAT+AGG | + | chr1_3:21494896-21494915 | None:intergenic | 30.0% | |
| AAAAGAAAAAGGAGGAAACA+AGG | - | chr1_3:21495207-21495226 | Msa0109500:CDS | 30.0% | |
| AAAGAAAAAGGAGGAAACAA+GGG | - | chr1_3:21495208-21495227 | Msa0109500:CDS | 30.0% | |
| ! | ATTAGCATTTTCAGTCTCAT+TGG | - | chr1_3:21495618-21495637 | Msa0109500:CDS | 30.0% |
| ! | AATTTGGTAGGTAATGGTAA+TGG | - | chr1_3:21495849-21495868 | Msa0109500:CDS | 30.0% |
| GAATGGAAAATGGTTTAAAG+TGG | - | chr1_3:21496071-21496090 | Msa0109500:intron | 30.0% | |
| ! | GAAAATGGTTTAAAGTGGTT+TGG | - | chr1_3:21496076-21496095 | Msa0109500:intron | 30.0% |
| ! | CTTCTGATTTAAAGTGTGTT+TGG | - | chr1_3:21496299-21496318 | Msa0109500:intron | 30.0% |
| ATGACGACATTGATAAATGT+CGG | + | chr1_3:21496328-21496347 | None:intergenic | 30.0% | |
| GGTAATAACTTAGGAAACAA+TGG | + | chr1_3:21496373-21496392 | None:intergenic | 30.0% | |
| ! | ATACTCTATGCTTTTGTATG+TGG | - | chr1_3:21496503-21496522 | Msa0109500:intron | 30.0% |
| ! | AAACTGACACAATTTTCCAA+TGG | + | chr1_3:21496632-21496651 | None:intergenic | 30.0% |
| CTTGACTATGACCAATTATT+TGG | - | chr1_3:21496734-21496753 | Msa0109500:intron | 30.0% | |
| GATGAATAAGAATCTGATAG+TGG | - | chr1_3:21496780-21496799 | Msa0109500:intron | 30.0% | |
| !! | TTAGATCCTCTTTTTGTTTC+AGG | - | chr1_3:21496901-21496920 | Msa0109500:intron | 30.0% |
| !! | TCATACTTTAACTGATTTGG+AGG | - | chr1_3:21497021-21497040 | Msa0109500:intron | 30.0% |
| ! | AATTTCAAAAAGCATGAGTC+GGG | + | chr1_3:21497251-21497270 | None:intergenic | 30.0% |
| ! | TTTTCAAACCAAAGTAACGA+CGG | + | chr1_3:21497352-21497371 | None:intergenic | 30.0% |
| ATCAAAGAGAATATGATGTG+TGG | - | chr1_3:21497408-21497427 | Msa0109500:intron | 30.0% | |
| CCATGTTCATAGTTAACATA+AGG | + | chr1_3:21497524-21497543 | None:intergenic | 30.0% | |
| CCTTATGTTAACTATGAACA+TGG | - | chr1_3:21497521-21497540 | Msa0109500:intron | 30.0% | |
| GGTATAAATCTGTTGATACA+TGG | - | chr1_3:21497542-21497561 | Msa0109500:intron | 30.0% | |
| ATAAATCTGTTGATACATGG+TGG | - | chr1_3:21497545-21497564 | Msa0109500:intron | 30.0% | |
| TAAATCTGTTGATACATGGT+GGG | - | chr1_3:21497546-21497565 | Msa0109500:intron | 30.0% | |
| GTTATTATGCTAGAAGATAG+TGG | - | chr1_3:21497608-21497627 | Msa0109500:intron | 30.0% | |
| !! | TGGAAAGAAAAAGAGTATCT+TGG | - | chr1_3:21497763-21497782 | Msa0109500:intron | 30.0% |
| TGGCAGTCAAAAAGAAAAAA+GGG | - | chr1_3:21497789-21497808 | Msa0109500:CDS | 30.0% | |
| ! | TGGTTTAAGCTTTTCTTGAT+TGG | - | chr1_3:21497909-21497928 | Msa0109500:CDS | 30.0% |
| ! | AAGCTTTTCTTGATTGGATT+TGG | - | chr1_3:21497915-21497934 | Msa0109500:CDS | 30.0% |
| ATTCTTCTACTTCTGCTTTA+GGG | - | chr1_3:21497995-21498014 | Msa0109500:CDS | 30.0% | |
| AACGTGACAAGAATTCCATT+GGG | + | chr1_3:21493022-21493041 | None:intergenic | 35.0% | |
| ! | TGAGTTTGTTTGAAAGAGGA+GGG | + | chr1_3:21493097-21493116 | None:intergenic | 35.0% |
| ! | TTGAGTTTGTTTGAAAGAGG+AGG | + | chr1_3:21493098-21493117 | None:intergenic | 35.0% |
| AAGTATAGCAGCATTTGAAG+AGG | + | chr1_3:21493126-21493145 | None:intergenic | 35.0% | |
| ! | GCTATACTTGAAGATTTTGC+TGG | - | chr1_3:21493137-21493156 | Msa0109500:three_prime_UTR | 35.0% |
| GAGAGGAAGCAAAAGAAAAA+GGG | + | chr1_3:21493199-21493218 | None:intergenic | 35.0% | |
| TGAGAGGAAGCAAAAGAAAA+AGG | + | chr1_3:21493200-21493219 | None:intergenic | 35.0% | |
| TTCCTCTCAAACTTCTCAAA+TGG | - | chr1_3:21493211-21493230 | Msa0109500:three_prime_UTR | 35.0% | |
| AACCATTTGAGAAGTTTGAG+AGG | + | chr1_3:21493216-21493235 | None:intergenic | 35.0% | |
| ! | CACTCGGTATGTAGTTTTTA+AGG | - | chr1_3:21493254-21493273 | Msa0109500:three_prime_UTR | 35.0% |
| !! | TTTTGGGAGACAAAAGAAAG+TGG | + | chr1_3:21493528-21493547 | None:intergenic | 35.0% |
| CACTTCCAAATTTGTATCCA+AGG | - | chr1_3:21493561-21493580 | Msa0109500:CDS | 35.0% | |
| TAAATTGATGTTGCAGTCCA+TGG | - | chr1_3:21493587-21493606 | Msa0109500:CDS | 35.0% | |
| TGTAATATCAAGGATCACCA+TGG | + | chr1_3:21493607-21493626 | None:intergenic | 35.0% | |
| ATAACGTTAAGTAAACGTCG+TGG | + | chr1_3:21493658-21493677 | None:intergenic | 35.0% | |
| !! | TTGATCTGAGACAAGTGTTT+TGG | - | chr1_3:21493702-21493721 | Msa0109500:CDS | 35.0% |
| TCTGTTAAAGATCCATTCAG+AGG | + | chr1_3:21493786-21493805 | None:intergenic | 35.0% | |
| ACCTTAACAAACAACCATGT+TGG | - | chr1_3:21493896-21493915 | Msa0109500:intron | 35.0% | |
| ! | ACCAACATGGTTGTTTGTTA+AGG | + | chr1_3:21493900-21493919 | None:intergenic | 35.0% |
| !! | AACAACCATGTTGGTTTGTT+TGG | - | chr1_3:21493905-21493924 | Msa0109500:intron | 35.0% |
| AAAGCTGAAATTGGTACTAG+TGG | + | chr1_3:21494006-21494025 | None:intergenic | 35.0% | |
| GTAACAGAGAAAGCTGAAAT+TGG | + | chr1_3:21494015-21494034 | None:intergenic | 35.0% | |
| ! | ACTCGACTTTAGTTACCTTT+TGG | - | chr1_3:21494449-21494468 | Msa0109500:intron | 35.0% |
| ! | CTCGACTTTAGTTACCTTTT+GGG | - | chr1_3:21494450-21494469 | Msa0109500:intron | 35.0% |
| ! | GATTCCTTATTTAGCCATCA+AGG | - | chr1_3:21494732-21494751 | Msa0109500:intron | 35.0% |
| ! | GTTTCCTTGATGGCTAAATA+AGG | + | chr1_3:21494739-21494758 | None:intergenic | 35.0% |
| ! | ATTGCTTTGTTCAGAATCTC+AGG | - | chr1_3:21494869-21494888 | Msa0109500:intron | 35.0% |
| ! | TGTTGTGATTGTTGCTTGAA+CGG | + | chr1_3:21495082-21495101 | None:intergenic | 35.0% |
| TTTCAGTCTCATTGGAATGT+TGG | - | chr1_3:21495626-21495645 | Msa0109500:CDS | 35.0% | |
| AATTCCTGTGGAGAAGAATT+TGG | - | chr1_3:21495833-21495852 | Msa0109500:CDS | 35.0% | |
| GAGAAGAATTTGGTAGGTAA+TGG | - | chr1_3:21495843-21495862 | Msa0109500:CDS | 35.0% | |
| !! | GTAGGTAATGGTAATGGTAA+TGG | - | chr1_3:21495855-21495874 | Msa0109500:CDS | 35.0% |
| TGCACCTGAAGAAAATTTCT+TGG | - | chr1_3:21495932-21495951 | Msa0109500:intron | 35.0% | |
| GCACCTGAAGAAAATTTCTT+GGG | - | chr1_3:21495933-21495952 | Msa0109500:intron | 35.0% | |
| ! | ATGCCCAAGAAATTTTCTTC+AGG | + | chr1_3:21495939-21495958 | None:intergenic | 35.0% |
| GTAAACACCGGTAATAACTT+AGG | + | chr1_3:21496382-21496401 | None:intergenic | 35.0% | |
| GAAAGAAGTGACTAAAGTGA+GGG | - | chr1_3:21496802-21496821 | Msa0109500:intron | 35.0% | |
| ! | AGAACGATGTGATGATGTTA+AGG | - | chr1_3:21496830-21496849 | Msa0109500:intron | 35.0% |
| ! | GAACGATGTGATGATGTTAA+GGG | - | chr1_3:21496831-21496850 | Msa0109500:intron | 35.0% |
| GCATAACCTGAAACAAAAAG+AGG | + | chr1_3:21496910-21496929 | None:intergenic | 35.0% | |
| !! | TACTTTAACTGATTTGGAGG+TGG | - | chr1_3:21497024-21497043 | Msa0109500:intron | 35.0% |
| !! | ACTTTAACTGATTTGGAGGT+GGG | - | chr1_3:21497025-21497044 | Msa0109500:intron | 35.0% |
| ! | TTTTTCGCAGATGTTGTGAT+TGG | - | chr1_3:21497269-21497288 | Msa0109500:CDS | 35.0% |
| TTATCTCTATTGCTGCTGAA+AGG | - | chr1_3:21497450-21497469 | Msa0109500:intron | 35.0% | |
| AAATCTGTTGATACATGGTG+GGG | - | chr1_3:21497547-21497566 | Msa0109500:intron | 35.0% | |
| !!! | CTTTTTTCTTTTTGACTGCC+AGG | + | chr1_3:21497790-21497809 | None:intergenic | 35.0% |
| CTGGCAGTCAAAAAGAAAAA+AGG | - | chr1_3:21497788-21497807 | Msa0109500:CDS | 35.0% | |
| !! | CTTTTGCTGCTTATCAATGT+TGG | - | chr1_3:21497889-21497908 | Msa0109500:CDS | 35.0% |
| GATTCTTCTACTTCTGCTTT+AGG | - | chr1_3:21497994-21498013 | Msa0109500:CDS | 35.0% | |
| GAACGTGACAAGAATTCCAT+TGG | + | chr1_3:21493023-21493042 | None:intergenic | 40.0% | |
| TGGAATTCTTGTCACGTTCA+TGG | - | chr1_3:21493024-21493043 | Msa0109500:three_prime_UTR | 40.0% | |
| ! | TTGATATGCTGAACTGACTC+AGG | - | chr1_3:21493347-21493366 | Msa0109500:three_prime_UTR | 40.0% |
| GATAGTCTTCCTGATGTTCT+TGG | + | chr1_3:21493750-21493769 | None:intergenic | 40.0% | |
| ATTTCAGAAGGTGAAACTGG+TGG | + | chr1_3:21493813-21493832 | None:intergenic | 40.0% | |
| ! | ACCAGTTTCACCTTCTGAAA+TGG | - | chr1_3:21493812-21493831 | Msa0109500:intron | 40.0% |
| TCCATTTCAGAAGGTGAAAC+TGG | + | chr1_3:21493816-21493835 | None:intergenic | 40.0% | |
| TAACAGTACACTGTACAGTG+AGG | + | chr1_3:21493979-21493998 | None:intergenic | 40.0% | |
| TGGCTGTTTGCATTGAAGAA+AGG | + | chr1_3:21494100-21494119 | None:intergenic | 40.0% | |
| ! | TATTGCTAATGGACCCCTTA+TGG | - | chr1_3:21494803-21494822 | Msa0109500:intron | 40.0% |
| GGAGAGGAAGGAAAAGAAAA+AGG | - | chr1_3:21495196-21495215 | Msa0109500:CDS | 40.0% | |
| GAGGAAGGAAAAGAAAAAGG+AGG | - | chr1_3:21495199-21495218 | Msa0109500:CDS | 40.0% | |
| TTTGAATTCGTAGCATTGCG+TGG | - | chr1_3:21495756-21495775 | Msa0109500:CDS | 40.0% | |
| TTGAATTCGTAGCATTGCGT+GGG | - | chr1_3:21495757-21495776 | Msa0109500:CDS | 40.0% | |
| TATTGCTGCTGTAATTCCTG+TGG | - | chr1_3:21495821-21495840 | Msa0109500:CDS | 40.0% | |
| !! | GGTAATGGTAATGGTAATGG+TGG | - | chr1_3:21495858-21495877 | Msa0109500:CDS | 40.0% |
| !! | AATGGTAATGGTAATGGTGG+TGG | - | chr1_3:21495861-21495880 | Msa0109500:CDS | 40.0% |
| !! | ATGGTAATGGTAATGGTGGT+GGG | - | chr1_3:21495862-21495881 | Msa0109500:CDS | 40.0% |
| TTACGTCTGAGTGTCATGTT+CGG | - | chr1_3:21496398-21496417 | Msa0109500:intron | 40.0% | |
| GGAAAGAAGTGACTAAAGTG+AGG | - | chr1_3:21496801-21496820 | Msa0109500:intron | 40.0% | |
| ATGAAGAGTAGACATGTTGC+TGG | - | chr1_3:21496935-21496954 | Msa0109500:intron | 40.0% | |
| TGAAGAGTAGACATGTTGCT+GGG | - | chr1_3:21496936-21496955 | Msa0109500:intron | 40.0% | |
| !! | AGGTGGGTCTTGTTTCATTT+GGG | - | chr1_3:21497041-21497060 | Msa0109500:intron | 40.0% |
| ACTCATCCTTTGATCCATCA+AGG | - | chr1_3:21497146-21497165 | Msa0109500:intron | 40.0% | |
| CTCATCCTTTGATCCATCAA+GGG | - | chr1_3:21497147-21497166 | Msa0109500:intron | 40.0% | |
| TGGCGTTATCAAAGAAATGC+CGG | - | chr1_3:21497289-21497308 | Msa0109500:intron | 40.0% | |
| ! | TTATCAAAGAAATGCCGGCT+TGG | - | chr1_3:21497294-21497313 | Msa0109500:intron | 40.0% |
| GGTTTGAAAACAATAACGCG+TGG | - | chr1_3:21497362-21497381 | Msa0109500:intron | 40.0% | |
| GAATATGATGTGTGGACTCA+AGG | - | chr1_3:21497416-21497435 | Msa0109500:intron | 40.0% | |
| !! | ATGCTAGAAGATAGTGGAAG+TGG | - | chr1_3:21497614-21497633 | Msa0109500:intron | 40.0% |
| !! | TGCTAGAAGATAGTGGAAGT+GGG | - | chr1_3:21497615-21497634 | Msa0109500:intron | 40.0% |
| GAAGTGGGTCTCTTTAATCT+TGG | - | chr1_3:21497630-21497649 | Msa0109500:intron | 40.0% | |
| TGGGTCTCTTTAATCTTGGA+GGG | - | chr1_3:21497634-21497653 | Msa0109500:intron | 40.0% | |
| !! | GAAAAAGAGTATCTTGGACC+TGG | - | chr1_3:21497769-21497788 | Msa0109500:CDS | 40.0% |
| TTGATTGGATTTGGATCCCA+AGG | - | chr1_3:21497924-21497943 | Msa0109500:CDS | 40.0% | |
| AAGAATTCCATTGGGTCACG+AGG | + | chr1_3:21493014-21493033 | None:intergenic | 45.0% | |
| !! | CAAAGCTTTGGAGACTTCCA+TGG | + | chr1_3:21493060-21493079 | None:intergenic | 45.0% |
| TTGAGCTGGAGACAAAGCTT+TGG | + | chr1_3:21493072-21493091 | None:intergenic | 45.0% | |
| GGATCGTATCATGTCTCACT+CGG | - | chr1_3:21493238-21493257 | Msa0109500:three_prime_UTR | 45.0% | |
| AGTGTTTGTCAGTTTCGTCG+CGG | + | chr1_3:21493312-21493331 | None:intergenic | 45.0% | |
| !!! | GTGTTTTGGTATTGTGCAGC+AGG | - | chr1_3:21493716-21493735 | Msa0109500:CDS | 45.0% |
| ! | TTTTGGTATTGTGCAGCAGG+AGG | - | chr1_3:21493719-21493738 | Msa0109500:CDS | 45.0% |
| ! | GAGGTATCTCCAAGAACATC+AGG | - | chr1_3:21493738-21493757 | Msa0109500:intron | 45.0% |
| ACATTCACACGTGTCAGACA+TGG | + | chr1_3:21494310-21494329 | None:intergenic | 45.0% | |
| GGACCCCTTATGGATAAACA+TGG | - | chr1_3:21494813-21494832 | Msa0109500:intron | 45.0% | |
| ACATTGAGCAGCTACCAATG+TGG | + | chr1_3:21495378-21495397 | None:intergenic | 45.0% | |
| CGTCAACGTTTGAATATCGC+CGG | + | chr1_3:21495480-21495499 | None:intergenic | 45.0% | |
| CGGCGATATTCAAACGTTGA+CGG | - | chr1_3:21495478-21495497 | Msa0109500:intron | 45.0% | |
| TGAATTCGTAGCATTGCGTG+GGG | - | chr1_3:21495758-21495777 | Msa0109500:CDS | 45.0% | |
| CAAGGGCCCTTAAAGAAGTT+TGG | - | chr1_3:21495796-21495815 | Msa0109500:CDS | 45.0% | |
| CCTACCAAATTCTTCTCCAC+AGG | + | chr1_3:21495840-21495859 | None:intergenic | 45.0% | |
| CCTGTGGAGAAGAATTTGGT+AGG | - | chr1_3:21495837-21495856 | Msa0109500:CDS | 45.0% | |
| !! | TGGTAATGGTAATGGTGGTG+GGG | - | chr1_3:21495863-21495882 | Msa0109500:CDS | 45.0% |
| AGCTCCAATAGTAGCTTCAG+TGG | - | chr1_3:21495903-21495922 | Msa0109500:CDS | 45.0% | |
| TTCGCCACTGAAGCTACTAT+TGG | + | chr1_3:21495910-21495929 | None:intergenic | 45.0% | |
| AGTAGAGAATTGCTTGCCAG+AGG | - | chr1_3:21495963-21495982 | Msa0109500:intron | 45.0% | |
| TTTAAGAAGCTCACAGCCTC+TGG | + | chr1_3:21495982-21496001 | None:intergenic | 45.0% | |
| TGACACTCAGACGTAAACAC+CGG | + | chr1_3:21496394-21496413 | None:intergenic | 45.0% | |
| ! | TGCTTTCAGGTGAACTCCAT+TGG | - | chr1_3:21496613-21496632 | Msa0109500:intron | 45.0% |
| !! | GAGGTGGGTCTTGTTTCATT+TGG | - | chr1_3:21497040-21497059 | Msa0109500:intron | 45.0% |
| !! | GGTGGGTCTTGTTTCATTTG+GGG | - | chr1_3:21497042-21497061 | Msa0109500:intron | 45.0% |
| TCAAAGGATGAGTGTGAAGG+TGG | + | chr1_3:21497139-21497158 | None:intergenic | 45.0% | |
| GGATCAAAGGATGAGTGTGA+AGG | + | chr1_3:21497142-21497161 | None:intergenic | 45.0% | |
| ! | TCGAACCCTTGATGGATCAA+AGG | + | chr1_3:21497155-21497174 | None:intergenic | 45.0% |
| TCCATCAAGGGTTCGATCAT+TGG | - | chr1_3:21497159-21497178 | Msa0109500:intron | 45.0% | |
| TTGTCTGCAATTGCGTGCAA+AGG | - | chr1_3:21497212-21497231 | Msa0109500:CDS | 45.0% | |
| ! | TGTGGACTCAAGGTGTTTCA+AGG | - | chr1_3:21497426-21497445 | Msa0109500:intron | 45.0% |
| GTGGGTCTCTTTAATCTTGG+AGG | - | chr1_3:21497633-21497652 | Msa0109500:intron | 45.0% | |
| ! | TTGGGTCACGAGGTGTTTCT+GGG | + | chr1_3:21493004-21493023 | None:intergenic | 50.0% |
| ! | ATTGGGTCACGAGGTGTTTC+TGG | + | chr1_3:21493005-21493024 | None:intergenic | 50.0% |
| AGAAACACCTCGTGACCCAA+TGG | - | chr1_3:21493004-21493023 | Msa0109500:three_prime_UTR | 50.0% | |
| TTCATGGTCTGCTTCTGCCA+TGG | - | chr1_3:21493040-21493059 | Msa0109500:three_prime_UTR | 50.0% | |
| GTGTTTGTCAGTTTCGTCGC+GGG | + | chr1_3:21493311-21493330 | None:intergenic | 50.0% | |
| ! | TATGCTGAACTGACTCAGGC+TGG | - | chr1_3:21493351-21493370 | Msa0109500:three_prime_UTR | 50.0% |
| GGAAGACTATCACACAGCAG+TGG | - | chr1_3:21493759-21493778 | Msa0109500:intron | 50.0% | |
| CATTACAGAGTCTCTGCCAC+CGG | - | chr1_3:21495131-21495150 | Msa0109500:CDS | 50.0% | |
| ! | TCAGCTCCATGCTGCTGTTT+CGG | - | chr1_3:21495241-21495260 | Msa0109500:intron | 50.0% |
| TGCTCGTAAAGACGAGCAGA+TGG | - | chr1_3:21495322-21495341 | Msa0109500:intron | 50.0% | |
| GGTAGCTGCTCAATGTGTTG+AGG | - | chr1_3:21495382-21495401 | Msa0109500:intron | 50.0% | |
| TCAATGTGTTGAGGCTGCTG+AGG | - | chr1_3:21495391-21495410 | Msa0109500:intron | 50.0% | |
| !! | TTAGCTCTGCCGTGAATGTG+AGG | - | chr1_3:21495450-21495469 | Msa0109500:intron | 50.0% |
| GGCTGCAACATTGAAGGCAA+GGG | - | chr1_3:21495779-21495798 | Msa0109500:CDS | 50.0% | |
| !! | GGTAATGGTAATGGTGGTGG+GGG | - | chr1_3:21495864-21495883 | Msa0109500:CDS | 50.0% |
| CTTCTTAAACGCACTCGCAC+AGG | - | chr1_3:21495993-21496012 | Msa0109500:intron | 50.0% | |
| GCCAATGATCGAACCCTTGA+TGG | + | chr1_3:21497163-21497182 | None:intergenic | 50.0% | |
| TCAAGGGTTCGATCATTGGC+TGG | - | chr1_3:21497163-21497182 | Msa0109500:intron | 50.0% | |
| GGTGACAACCGTCGTTACTT+TGG | - | chr1_3:21497341-21497360 | Msa0109500:intron | 50.0% | |
| !! | TCACGAGGTGTTTCTGGGTC+GGG | + | chr1_3:21492999-21493018 | None:intergenic | 55.0% |
| !! | GTCACGAGGTGTTTCTGGGT+CGG | + | chr1_3:21493000-21493019 | None:intergenic | 55.0% |
| GAAAGAGGAGGGAGTTGAGC+TGG | + | chr1_3:21493086-21493105 | None:intergenic | 55.0% | |
| ! | CTGAACTGACTCAGGCTGGT+CGG | - | chr1_3:21493355-21493374 | Msa0109500:three_prime_UTR | 55.0% |
| CACAGCAGTGGACCTCTGAA+TGG | - | chr1_3:21493771-21493790 | Msa0109500:intron | 55.0% | |
| CGGTGGCAGAGACTCTGTAA+TGG | + | chr1_3:21495133-21495152 | None:intergenic | 55.0% | |
| CAGCAACCGAAACAGCAGCA+TGG | + | chr1_3:21495250-21495269 | None:intergenic | 55.0% | |
| !! | CATGCTGCTGTTTCGGTTGC+TGG | - | chr1_3:21495248-21495267 | Msa0109500:intron | 55.0% |
| ACCTGACGAAGCAGCAGTTG+CGG | + | chr1_3:21495303-21495322 | None:intergenic | 55.0% | |
| GCAGATGGCGAAGACAGACA+TGG | - | chr1_3:21495337-21495356 | Msa0109500:intron | 55.0% | |
| GATGGCGAAGACAGACATGG+CGG | - | chr1_3:21495340-21495359 | Msa0109500:intron | 55.0% | |
| GACAGACATGGCGGTAGCAT+CGG | - | chr1_3:21495349-21495368 | Msa0109500:intron | 55.0% | |
| TGTTGAGGCTGCTGAGGCTA+TGG | - | chr1_3:21495397-21495416 | Msa0109500:intron | 55.0% | |
| GTTGAGGCTGCTGAGGCTAT+GGG | - | chr1_3:21495398-21495417 | Msa0109500:intron | 55.0% | |
| TTGAGGCTGCTGAGGCTATG+GGG | - | chr1_3:21495399-21495418 | Msa0109500:intron | 55.0% | |
| TGAGCGTGATCACCTCGCTT+CGG | - | chr1_3:21495424-21495443 | Msa0109500:intron | 55.0% | |
| GGGCTGCAACATTGAAGGCA+AGG | - | chr1_3:21495778-21495797 | Msa0109500:CDS | 55.0% | |
| !! | AAAGAAATGCCGGCTTGGCC+TGG | - | chr1_3:21497299-21497318 | Msa0109500:intron | 55.0% |
| CCTTCTAGCAAGTGACGTCC+AGG | + | chr1_3:21497320-21497339 | None:intergenic | 55.0% | |
| ! | CCTGGACGTCACTTGCTAGA+AGG | - | chr1_3:21497317-21497336 | Msa0109500:intron | 55.0% |
| ! | GGACGTCACTTGCTAGAAGG+TGG | - | chr1_3:21497320-21497339 | Msa0109500:intron | 55.0% |
| TACAGAGTCTCTGCCACCGG+CGG | - | chr1_3:21495134-21495153 | Msa0109500:CDS | 60.0% | |
| GAGGTGGCTGAAGGAGAGGA+AGG | - | chr1_3:21495184-21495203 | Msa0109500:CDS | 60.0% | |
| TGGAGTTGCAGCCGCTGTTG+CGG | - | chr1_3:21495268-21495287 | Msa0109500:intron | 60.0% | |
| GGCTGCAATAGCCGCAACAG+CGG | + | chr1_3:21495282-21495301 | None:intergenic | 60.0% | |
| !! | GGTAGCATCGGCTGCCACAT+TGG | - | chr1_3:21495361-21495380 | Msa0109500:intron | 60.0% |
| TGAGGCTGCTGAGGCTATGG+GGG | - | chr1_3:21495400-21495419 | Msa0109500:intron | 60.0% | |
| CAGAGCTAACCACCGAAGCG+AGG | + | chr1_3:21495439-21495458 | None:intergenic | 60.0% | |
| GCCGTGAATGTGAGGTCTGC+CGG | - | chr1_3:21495458-21495477 | Msa0109500:intron | 60.0% | |
| GCCGGCAGACCTCACATTCA+CGG | + | chr1_3:21495462-21495481 | None:intergenic | 60.0% | |
| GCGTGGGGCTGCAACATTGA+AGG | - | chr1_3:21495773-21495792 | Msa0109500:CDS | 60.0% | |
| GGTGGGGGCAGTGGTAGTAA+TGG | - | chr1_3:21495879-21495898 | Msa0109500:CDS | 60.0% | |
| AAGTGACGTCCAGGCCAAGC+CGG | + | chr1_3:21497311-21497330 | None:intergenic | 60.0% | |
| TGGGGAGGTGGCTGAAGGAG+AGG | - | chr1_3:21495180-21495199 | Msa0109500:CDS | 65.0% | |
| ! | GCCGCAACTGCTGCTTCGTC+AGG | - | chr1_3:21495299-21495318 | Msa0109500:intron | 65.0% |
| GCGTGATCACCTCGCTTCGG+TGG | - | chr1_3:21495427-21495446 | Msa0109500:intron | 65.0% | |
| TTGACGGCTGCTGCTGCGAC+AGG | - | chr1_3:21495494-21495513 | Msa0109500:intron | 65.0% | |
| !! | GGTAATGGTGGTGGGGGCAG+TGG | - | chr1_3:21495870-21495889 | Msa0109500:CDS | 65.0% |
| AGAGTCTCTGCCACCGGCGG+TGG | - | chr1_3:21495137-21495156 | Msa0109500:CDS | 70.0% | |
| TGGCGGAGGCGGAGGGAAGA+CGG | - | chr1_3:21495157-21495176 | Msa0109500:CDS | 70.0% | |
| GGAGGCGGAGGGAAGACGGT+GGG | - | chr1_3:21495161-21495180 | Msa0109500:CDS | 70.0% | |
| GAGGCGGAGGGAAGACGGTG+GGG | - | chr1_3:21495162-21495181 | Msa0109500:CDS | 70.0% | |
| GAGGGAAGACGGTGGGGAGG+TGG | - | chr1_3:21495168-21495187 | Msa0109500:CDS | 70.0% | |
| GACGGTGGGGAGGTGGCTGA+AGG | - | chr1_3:21495175-21495194 | Msa0109500:CDS | 70.0% | |
| GTCTCTGCCACCGGCGGTGG+CGG | - | chr1_3:21495140-21495159 | Msa0109500:CDS | 75.0% | |
| CGGAGGCGGAGGGAAGACGG+TGG | - | chr1_3:21495160-21495179 | Msa0109500:CDS | 75.0% | |
| GCGGAGGGAAGACGGTGGGG+AGG | - | chr1_3:21495165-21495184 | Msa0109500:CDS | 75.0% | |
| !! | TCTGCCACCGGCGGTGGCGG+AGG | - | chr1_3:21495143-21495162 | Msa0109500:CDS | 80.0% |
| !!! | GCCACCGGCGGTGGCGGAGG+CGG | - | chr1_3:21495146-21495165 | Msa0109500:CDS | 85.0% |
| ! | TCCGCCTCCGCCACCGCCGG+TGG | + | chr1_3:21495150-21495169 | None:intergenic | 85.0% |
| !!! | ACCGGCGGTGGCGGAGGCGG+AGG | - | chr1_3:21495149-21495168 | Msa0109500:CDS | 85.0% |
| ! | CCCTCCGCCTCCGCCACCGC+CGG | + | chr1_3:21495153-21495172 | None:intergenic | 85.0% |
| !!! | CCGGCGGTGGCGGAGGCGGA+GGG | - | chr1_3:21495150-21495169 | Msa0109500:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 21492926 | 21498098 | 21492926 | ID=Msa0109500;Name=Msa0109500 |
| chr1_3 | mRNA | 21492926 | 21498098 | 21492926 | ID=Msa0109500-mRNA-1;Parent=Msa0109500;Name=Msa0109500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=40|1|1|1|1|1|7|602|472 |
| chr1_3 | exon | 21492926 | 21493745 | 21492926 | ID=Msa0109500-mRNA-1:exon:7757;Parent=Msa0109500-mRNA-1 |
| chr1_3 | exon | 21494044 | 21494101 | 21494044 | ID=Msa0109500-mRNA-1:exon:7756;Parent=Msa0109500-mRNA-1 |
| chr1_3 | exon | 21494353 | 21494402 | 21494353 | ID=Msa0109500-mRNA-1:exon:7755;Parent=Msa0109500-mRNA-1 |
| chr1_3 | exon | 21495010 | 21495255 | 21495010 | ID=Msa0109500-mRNA-1:exon:7754;Parent=Msa0109500-mRNA-1 |
| chr1_3 | exon | 21495509 | 21495950 | 21495509 | ID=Msa0109500-mRNA-1:exon:7753;Parent=Msa0109500-mRNA-1 |
| chr1_3 | exon | 21497179 | 21497289 | 21497179 | ID=Msa0109500-mRNA-1:exon:7752;Parent=Msa0109500-mRNA-1 |
| chr1_3 | exon | 21497765 | 21498098 | 21497765 | ID=Msa0109500-mRNA-1:exon:7751;Parent=Msa0109500-mRNA-1 |
| chr1_3 | five_prime_UTR | 21498059 | 21498098 | 21498059 | ID=Msa0109500-mRNA-1:five_prime_utr;Parent=Msa0109500-mRNA-1 |
| chr1_3 | CDS | 21497765 | 21498058 | 21497765 | ID=Msa0109500-mRNA-1:cds;Parent=Msa0109500-mRNA-1 |
| chr1_3 | CDS | 21497179 | 21497289 | 21497179 | ID=Msa0109500-mRNA-1:cds;Parent=Msa0109500-mRNA-1 |
| chr1_3 | CDS | 21495509 | 21495950 | 21495509 | ID=Msa0109500-mRNA-1:cds;Parent=Msa0109500-mRNA-1 |
| chr1_3 | CDS | 21495010 | 21495255 | 21495010 | ID=Msa0109500-mRNA-1:cds;Parent=Msa0109500-mRNA-1 |
| chr1_3 | CDS | 21494353 | 21494402 | 21494353 | ID=Msa0109500-mRNA-1:cds;Parent=Msa0109500-mRNA-1 |
| chr1_3 | CDS | 21494044 | 21494101 | 21494044 | ID=Msa0109500-mRNA-1:cds;Parent=Msa0109500-mRNA-1 |
| chr1_3 | CDS | 21493528 | 21493745 | 21493528 | ID=Msa0109500-mRNA-1:cds;Parent=Msa0109500-mRNA-1 |
| chr1_3 | three_prime_UTR | 21492926 | 21493527 | 21492926 | ID=Msa0109500-mRNA-1:three_prime_utr;Parent=Msa0109500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
