Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064560 | sp|Q8W4K5|VAB_ARATH | 62.979 | 470 | 152 | 11 | 13 | 469 | 30 | 490 | 1.11e-142 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064560 | A0A072VHG4 | 96.829 | 473 | 12 | 2 | 1 | 472 | 1 | 471 | 0.0 | 929 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0064560 | 0.803657 | 3.139337e-49 | -8.615850e-47 |
| Msa0032840 | Msa0064560 | -0.815017 | 1.146499e-51 | -8.615850e-47 |
| Msa0064560 | Msa0067360 | 0.801007 | 1.103059e-48 | -8.615850e-47 |
| Msa0064560 | Msa0103000 | 0.809451 | 1.879912e-50 | -8.615850e-47 |
| Msa0064560 | Msa0109500 | 0.902124 | 1.335787e-78 | -8.615850e-47 |
| Msa0064560 | Msa0110970 | 0.837619 | 4.672455e-57 | -8.615850e-47 |
| Msa0064560 | Msa0114540 | -0.808369 | 3.204483e-50 | -8.615850e-47 |
| Msa0064560 | Msa0127440 | 0.803633 | 3.176028e-49 | -8.615850e-47 |
| Msa0064560 | Msa0140570 | 0.801851 | 7.409608e-49 | -8.615850e-47 |
| Msa0064560 | Msa0147560 | 0.803006 | 4.283116e-49 | -8.615850e-47 |
| Msa0064560 | Msa0157290 | 0.803487 | 3.405780e-49 | -8.615850e-47 |
| Msa0064560 | Msa0172350 | 0.823966 | 1.042093e-53 | -8.615850e-47 |
| Msa0064560 | Msa0172960 | -0.805663 | 1.197243e-49 | -8.615850e-47 |
| Msa0064560 | Msa0196130 | -0.815303 | 9.905435e-52 | -8.615850e-47 |
| Msa0064560 | Msa0222920 | 0.814923 | 1.203177e-51 | -8.615850e-47 |
| Msa0064560 | Msa0230550 | -0.814821 | 1.267502e-51 | -8.615850e-47 |
| Msa0064560 | Msa0234600 | 0.811221 | 7.801868e-51 | -8.615850e-47 |
| Msa0064560 | Msa0238070 | -0.815178 | 1.055798e-51 | -8.615850e-47 |
| Msa0064560 | Msa0264350 | 0.803909 | 2.783643e-49 | -8.615850e-47 |
| Msa0064560 | Msa0267760 | 0.834546 | 2.815084e-56 | -8.615850e-47 |
| Msa0064560 | Msa0272480 | -0.802661 | 5.047157e-49 | -8.615850e-47 |
| Msa0064560 | Msa0287000 | 0.804176 | 2.449550e-49 | -8.615850e-47 |
| Msa0064560 | Msa0320100 | 0.800846 | 1.189996e-48 | -8.615850e-47 |
| Msa0064560 | Msa0414950 | -0.835386 | 1.729088e-56 | -8.615850e-47 |
| Msa0064560 | Msa0423040 | 0.810170 | 1.317035e-50 | -8.615850e-47 |
| Msa0064560 | Msa0435460 | 0.840850 | 6.781250e-58 | -8.615850e-47 |
| Msa0064560 | Msa0436280 | -0.800015 | 1.757407e-48 | -8.615850e-47 |
| Msa0064560 | Msa0459770 | -0.816696 | 4.840621e-52 | -8.615850e-47 |
| Msa0064560 | Msa0465950 | 0.802511 | 5.420178e-49 | -8.615850e-47 |
| Msa0064560 | Msa0480980 | 0.802278 | 6.053431e-49 | -8.615850e-47 |
| Msa0064560 | Msa0526710 | 0.833774 | 4.395248e-56 | -8.615850e-47 |
| Msa0064560 | Msa0533070 | 0.803089 | 4.117309e-49 | -8.615850e-47 |
| Msa0064560 | Msa0579390 | 0.804769 | 1.842263e-49 | -8.615850e-47 |
| Msa0064560 | Msa0581760 | 0.810079 | 1.377287e-50 | -8.615850e-47 |
| Msa0064560 | Msa0625530 | -0.806588 | 7.648823e-50 | -8.615850e-47 |
| Msa0064560 | Msa0682620 | 0.811421 | 7.061226e-51 | -8.615850e-47 |
| Msa0064560 | Msa0688770 | 0.819736 | 9.930306e-53 | -8.615850e-47 |
| Msa0064560 | Msa0756630 | -0.806211 | 9.183067e-50 | -8.615850e-47 |
| Msa0064560 | Msa0853540 | 0.813859 | 2.067831e-51 | -8.615850e-47 |
| Msa0064560 | Msa0866760 | 0.831545 | 1.570956e-55 | -8.615850e-47 |
| Msa0064560 | Msa0880140 | 0.803552 | 3.302094e-49 | -8.615850e-47 |
| Msa0064560 | Msa0977320 | 0.810404 | 1.172031e-50 | -8.615850e-47 |
| Msa0064560 | Msa1004900 | -0.813238 | 2.832563e-51 | -8.615850e-47 |
| Msa0064560 | Msa1007610 | -0.815472 | 9.085257e-52 | -8.615850e-47 |
| Msa0064560 | Msa1036390 | 0.819231 | 1.294566e-52 | -8.615850e-47 |
| Msa0064560 | Msa1040120 | 0.856764 | 2.579321e-62 | -8.615850e-47 |
| Msa0064560 | Msa1075220 | -0.804588 | 2.010342e-49 | -8.615850e-47 |
| Msa0064560 | Msa1076680 | 0.809430 | 1.899676e-50 | -8.615850e-47 |
| Msa0064560 | Msa1116130 | -0.811293 | 7.527029e-51 | -8.615850e-47 |
| Msa0064560 | Msa1120530 | 0.842990 | 1.844993e-58 | -8.615850e-47 |
| Msa0064560 | Msa1124680 | -0.810319 | 1.222577e-50 | -8.615850e-47 |
| Msa0064560 | Msa1128160 | 0.826194 | 3.101599e-54 | -8.615850e-47 |
| Msa0064560 | Msa1165360 | 0.825288 | 5.086355e-54 | -8.615850e-47 |
| Msa0064560 | Msa1222970 | 0.843178 | 1.643921e-58 | -8.615850e-47 |
| Msa0064560 | Msa1228210 | 0.845911 | 3.022788e-59 | -8.615850e-47 |
| Msa0064560 | Msa1242220 | 0.809262 | 2.064100e-50 | -8.615850e-47 |
| Msa0064560 | Msa1242230 | 0.833632 | 4.769985e-56 | -8.615850e-47 |
| Msa0064560 | Msa1242240 | 0.844567 | 6.979846e-59 | -8.615850e-47 |
| Msa0064560 | Msa1253930 | -0.806510 | 7.944595e-50 | -8.615850e-47 |
| Msa0064560 | Msa1264020 | 0.832300 | 1.022584e-55 | -8.615850e-47 |
| Msa0064560 | Msa1269580 | -0.801520 | 8.663608e-49 | -8.615850e-47 |
| Msa0064560 | Msa1271280 | 0.848364 | 6.426680e-60 | -8.615850e-47 |
| Msa0064560 | Msa1271300 | 0.829335 | 5.451948e-55 | -8.615850e-47 |
| Msa0064560 | Msa1283840 | 0.827852 | 1.244550e-54 | -8.615850e-47 |
| Msa0064560 | Msa1283860 | 0.819388 | 1.192047e-52 | -8.615850e-47 |
| Msa0064560 | Msa1284260 | 0.844171 | 8.919697e-59 | -8.615850e-47 |
| Msa0064560 | Msa1308380 | 0.809970 | 1.454211e-50 | -8.615850e-47 |
| Msa0064560 | Msa1322860 | 0.824163 | 9.364742e-54 | -8.615850e-47 |
| Msa0064560 | Msa1322890 | 0.811747 | 5.998652e-51 | -8.615850e-47 |
| Msa0064560 | Msa1327050 | 0.835379 | 1.736547e-56 | -8.615850e-47 |
| Msa0064560 | Msa1367080 | 0.823754 | 1.168397e-53 | -8.615850e-47 |
| Msa0064560 | Msa1378760 | 0.801732 | 7.836208e-49 | -8.615850e-47 |
| Msa0064560 | Msa1390310 | 0.808167 | 3.537612e-50 | -8.615850e-47 |
| Msa0064560 | Msa1395230 | -0.805447 | 1.329319e-49 | -8.615850e-47 |
| Msa0064560 | Msa1410430 | -0.800205 | 1.607692e-48 | -8.615850e-47 |
| Msa0064560 | Msa1411070 | 0.801874 | 7.327009e-49 | -8.615850e-47 |
| Msa0064560 | Msa1417870 | 0.802368 | 5.798558e-49 | -8.615850e-47 |
| Msa0064560 | Msa1427760 | 0.816648 | 4.961687e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064560 | MtrunA17_Chr1g0166381 | 96.617 | 473 | 12 | 3 | 1 | 472 | 1 | 470 | 0.0 | 922 |
| Msa0064560 | MtrunA17_Chr1g0204831 | 69.628 | 484 | 104 | 10 | 1 | 470 | 1 | 455 | 1.42e-173 | 495 |
| Msa0064560 | MtrunA17_Chr7g0260211 | 63.617 | 470 | 144 | 9 | 11 | 468 | 18 | 472 | 6.82e-162 | 466 |
| Msa0064560 | MtrunA17_Chr1g0185201 | 66.525 | 469 | 134 | 11 | 13 | 469 | 26 | 483 | 2.10e-161 | 465 |
| Msa0064560 | MtrunA17_Chr3g0140081 | 38.359 | 451 | 192 | 12 | 20 | 464 | 1 | 371 | 3.47e-62 | 206 |
| Msa0064560 | MtrunA17_Chr4g0019631 | 48.855 | 262 | 98 | 5 | 168 | 420 | 63 | 297 | 1.16e-49 | 171 |
| Msa0064560 | MtrunA17_Chr5g0399391 | 37.793 | 299 | 144 | 6 | 170 | 459 | 113 | 378 | 6.73e-46 | 164 |
| Msa0064560 | MtrunA17_Chr4g0073191 | 33.108 | 296 | 153 | 7 | 170 | 462 | 146 | 399 | 2.37e-15 | 77.8 |
| Msa0064560 | MtrunA17_Chr7g0260231 | 78.788 | 33 | 7 | 0 | 436 | 468 | 15 | 47 | 4.36e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064560 | AT4G14740.1 | 69.182 | 477 | 129 | 6 | 1 | 465 | 1 | 471 | 0.0 | 580 |
| Msa0064560 | AT4G14740.2 | 69.182 | 477 | 129 | 6 | 1 | 465 | 1 | 471 | 0.0 | 580 |
| Msa0064560 | AT3G22810.1 | 69.672 | 488 | 113 | 10 | 1 | 470 | 1 | 471 | 0.0 | 577 |
| Msa0064560 | AT5G43870.1 | 63.866 | 476 | 126 | 10 | 6 | 468 | 10 | 452 | 8.49e-174 | 496 |
| Msa0064560 | AT4G14740.4 | 68.523 | 413 | 112 | 6 | 1 | 401 | 1 | 407 | 2.14e-165 | 473 |
| Msa0064560 | AT3G22810.2 | 68.974 | 419 | 95 | 10 | 1 | 401 | 1 | 402 | 6.69e-160 | 459 |
| Msa0064560 | AT4G14740.3 | 74.006 | 327 | 78 | 3 | 144 | 465 | 8 | 332 | 6.08e-146 | 421 |
| Msa0064560 | AT3G22810.3 | 74.695 | 328 | 73 | 3 | 150 | 470 | 9 | 333 | 2.07e-145 | 419 |
| Msa0064560 | AT3G63300.1 | 62.979 | 470 | 152 | 11 | 13 | 469 | 30 | 490 | 1.13e-143 | 421 |
| Msa0064560 | AT5G43870.2 | 63.325 | 409 | 104 | 10 | 6 | 401 | 10 | 385 | 6.89e-132 | 387 |
| Msa0064560 | AT3G63300.2 | 69.872 | 312 | 86 | 4 | 159 | 469 | 28 | 332 | 1.33e-103 | 313 |
| Msa0064560 | AT4G32780.1 | 38.344 | 459 | 174 | 14 | 13 | 460 | 35 | 395 | 7.88e-45 | 162 |
| Msa0064560 | AT4G32780.2 | 38.344 | 459 | 174 | 14 | 13 | 460 | 54 | 414 | 1.46e-44 | 162 |
| Msa0064560 | AT4G17350.1 | 39.667 | 300 | 140 | 8 | 170 | 459 | 115 | 383 | 2.36e-43 | 158 |
| Msa0064560 | AT5G47440.1 | 37.979 | 287 | 146 | 5 | 178 | 461 | 131 | 388 | 1.43e-39 | 147 |
| Msa0064560 | AT4G16670.1 | 35.906 | 298 | 162 | 5 | 170 | 459 | 132 | 408 | 7.67e-38 | 143 |
| Msa0064560 | AT4G16670.2 | 39.749 | 239 | 116 | 4 | 170 | 400 | 132 | 350 | 1.38e-30 | 122 |
| Msa0064560 | AT4G16670.3 | 35.448 | 268 | 116 | 5 | 170 | 400 | 132 | 379 | 7.37e-25 | 106 |
| Msa0064560 | AT5G57770.1 | 38.525 | 244 | 114 | 6 | 170 | 410 | 128 | 338 | 2.55e-20 | 93.2 |
| Msa0064560 | AT5G57770.2 | 36.177 | 293 | 137 | 8 | 122 | 394 | 63 | 325 | 8.97e-20 | 90.9 |
Find 149 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATATTCCAAACTTCTTTA+AGG | 0.144092 | 1_2:+25804351 | None:intergenic |
| GATTCTTCTACTTCTGCTTT+AGG | 0.147149 | 1_2:-25802256 | Msa0064560:three_prime_UTR |
| ATTGGGTCACGAGGTGTTTC+TGG | 0.168206 | 1_2:+25807910 | None:intergenic |
| TGAGAGGAAGCAAAAGAAAA+AGG | 0.185399 | 1_2:+25807715 | None:intergenic |
| GAGTCTATTATAACTGTTTC+TGG | 0.188381 | 1_2:-25807742 | Msa0064560:CDS |
| CATGCTGCTGTTTCGGTTGC+TGG | 0.188711 | 1_2:-25804906 | Msa0064560:CDS |
| TCAAACATCTCAAATGGTTT+TGG | 0.234078 | 1_2:-25807695 | Msa0064560:CDS |
| ATTAACTATAAACATGTTAT+AGG | 0.266317 | 1_2:-25802753 | Msa0064560:three_prime_UTR |
| ATTCTTCTACTTCTGCTTTA+GGG | 0.283425 | 1_2:-25802255 | Msa0064560:three_prime_UTR |
| TGCACCTGAAGAAAATTTCT+TGG | 0.293086 | 1_2:-25804222 | Msa0064560:CDS |
| AATATTCCAAACTTCTTTAA+GGG | 0.302087 | 1_2:+25804352 | None:intergenic |
| AATTCCTGTGGAGAAGAATT+TGG | 0.302301 | 1_2:-25804321 | Msa0064560:CDS |
| TCTAAACATCAACACCAAAA+TGG | 0.303422 | 1_2:-25807965 | Msa0064560:exon |
| GGAGAGGAAGGAAAAGAAAA+AGG | 0.308251 | 1_2:-25804958 | Msa0064560:CDS |
| GATAGTCTTCCTGATGTTCT+TGG | 0.310186 | 1_2:+25807230 | None:intergenic |
| GCCGCAACTGCTGCTTCGTC+AGG | 0.322180 | 1_2:-25804855 | Msa0064560:CDS |
| CAAGGGCCCTTAAAGAAGTT+TGG | 0.334393 | 1_2:-25804358 | Msa0064560:CDS |
| TGGAATTCTTGTCACGTTCA+TGG | 0.356920 | 1_2:-25807888 | Msa0064560:CDS |
| GCCACCGGCGGTGGCGGAGG+CGG | 0.357360 | 1_2:-25805008 | Msa0064560:CDS |
| GAGGGAAGACGGTGGGGAGG+TGG | 0.359935 | 1_2:-25804986 | Msa0064560:CDS |
| TCTACAGAAAATCATTGTTA+TGG | 0.364437 | 1_2:-25802278 | Msa0064560:three_prime_UTR |
| ACCAGTTTCACCTTCTGAAA+TGG | 0.365421 | 1_2:-25807165 | Msa0064560:CDS |
| TGTTGAGGCTGCTGAGGCTA+TGG | 0.367362 | 1_2:-25804757 | Msa0064560:CDS |
| TCAGCTCCATGCTGCTGTTT+CGG | 0.370761 | 1_2:-25804913 | Msa0064560:CDS |
| ACCGGCGGTGGCGGAGGCGG+AGG | 0.377516 | 1_2:-25805005 | Msa0064560:CDS |
| GTCTCTGCCACCGGCGGTGG+CGG | 0.378739 | 1_2:-25805014 | Msa0064560:CDS |
| TTCTGAAATGGATGATTTCA+AGG | 0.395872 | 1_2:-25807153 | Msa0064560:intron |
| TTGGGTCACGAGGTGTTTCT+GGG | 0.401162 | 1_2:+25807911 | None:intergenic |
| GAAAGAGGAGGGAGTTGAGC+TGG | 0.402468 | 1_2:+25807829 | None:intergenic |
| TCCATTTCAGAAGGTGAAAC+TGG | 0.405672 | 1_2:+25807164 | None:intergenic |
| TTCGCCACTGAAGCTACTAT+TGG | 0.406875 | 1_2:+25804247 | None:intergenic |
| GTGGGTCTCTTTAATCTTGG+AGG | 0.415326 | 1_2:-25802616 | Msa0064560:three_prime_UTR |
| GAAGTGGGTCTCTTTAATCT+TGG | 0.429849 | 1_2:-25802619 | Msa0064560:three_prime_UTR |
| TTGAGCTGGAGACAAAGCTT+TGG | 0.431363 | 1_2:+25807843 | None:intergenic |
| AAAGAAATGCCGGCTTGGCC+TGG | 0.432592 | 1_2:-25802950 | Msa0064560:CDS |
| GCACCTGAAGAAAATTTCTT+GGG | 0.433850 | 1_2:-25804221 | Msa0064560:CDS |
| ATGGTAATGGTAATGGTGGT+GGG | 0.434293 | 1_2:-25804292 | Msa0064560:CDS |
| CTTAAAACAAAAGAATTCCT+TGG | 0.434682 | 1_2:+25802309 | None:intergenic |
| GTTGAGGCTGCTGAGGCTAT+GGG | 0.435850 | 1_2:-25804756 | Msa0064560:CDS |
| GTTATTATGCTAGAAGATAG+TGG | 0.437177 | 1_2:-25802641 | Msa0064560:three_prime_UTR |
| TGTGGACTCAAGGTGTTTCA+AGG | 0.439083 | 1_2:-25802823 | Msa0064560:CDS |
| TTCCTCTCAAACATCTCAAA+TGG | 0.442465 | 1_2:-25807701 | Msa0064560:CDS |
| AATGGTAATGGTAATGGTGG+TGG | 0.445582 | 1_2:-25804293 | Msa0064560:CDS |
| GTCACGAGGTGTTTCTGGGT+CGG | 0.446288 | 1_2:+25807915 | None:intergenic |
| TCTGCCACCGGCGGTGGCGG+AGG | 0.450077 | 1_2:-25805011 | Msa0064560:CDS |
| TTAAAACAAAAGAATTCCTT+GGG | 0.450665 | 1_2:+25802310 | None:intergenic |
| TCACGAGGTGTTTCTGGGTC+GGG | 0.454736 | 1_2:+25807916 | None:intergenic |
| CCTGGACGTCACTTGCTAGA+AGG | 0.455426 | 1_2:-25802932 | Msa0064560:CDS |
| GCGGAGGGAAGACGGTGGGG+AGG | 0.464521 | 1_2:-25804989 | Msa0064560:CDS |
| CCCTCCGCCTCCGCCACCGC+CGG | 0.464687 | 1_2:+25805004 | None:intergenic |
| GAGGTGGCTGAAGGAGAGGA+AGG | 0.465983 | 1_2:-25804970 | Msa0064560:CDS |
| TTGAGTTTGTTTGAAAGAGG+AGG | 0.469011 | 1_2:+25807817 | None:intergenic |
| TTTAAGAAGCTCACAACCTC+TGG | 0.469999 | 1_2:+25804175 | None:intergenic |
| GAGAAGAATTTGGTAGGTAA+TGG | 0.471793 | 1_2:-25804311 | Msa0064560:CDS |
| CCGGCGGTGGCGGAGGCGGA+GGG | 0.476107 | 1_2:-25805004 | Msa0064560:CDS |
| GAGGTATCTCCAAGAACATC+AGG | 0.477235 | 1_2:-25807239 | Msa0064560:CDS |
| TGGCGGAGGCGGAGGGAAGA+CGG | 0.479655 | 1_2:-25804997 | Msa0064560:CDS |
| AGAAGAAGAAGATGAAAGAG+TGG | 0.480348 | 1_2:+25807994 | None:intergenic |
| TTGACGGCTGCTGCTGCGAC+AGG | 0.482568 | 1_2:-25804660 | Msa0064560:intron |
| ATGAAGAGTAGACATGTTGC+TGG | 0.483425 | 1_2:-25803314 | Msa0064560:CDS |
| GTAGGTAATGGTAATGGTAA+TGG | 0.484250 | 1_2:-25804299 | Msa0064560:CDS |
| TTGTTGAGTTTGTTTGAAAG+AGG | 0.487700 | 1_2:+25807814 | None:intergenic |
| TGAGTTTGTTTGAAAGAGGA+GGG | 0.490544 | 1_2:+25807818 | None:intergenic |
| ATGCTAGAAGATAGTGGAAG+TGG | 0.491785 | 1_2:-25802635 | Msa0064560:three_prime_UTR |
| TGGGTCTCTTTAATCTTGGA+GGG | 0.491896 | 1_2:-25802615 | Msa0064560:three_prime_UTR |
| TGATTGCAGGTGAACTCCAT+TGG | 0.494096 | 1_2:-25803636 | Msa0064560:intron |
| TTGATTGGATTTGGATCCCA+AGG | 0.495724 | 1_2:-25802326 | Msa0064560:three_prime_UTR |
| GACAGACATGGCGGTAGCAT+CGG | 0.497990 | 1_2:-25804805 | Msa0064560:CDS |
| GAGGCGGAGGGAAGACGGTG+GGG | 0.498373 | 1_2:-25804992 | Msa0064560:CDS |
| AGAGTCTCTGCCACCGGCGG+TGG | 0.498489 | 1_2:-25805017 | Msa0064560:CDS |
| CCATGTTCATAGTTAACATA+AGG | 0.501641 | 1_2:+25802728 | None:intergenic |
| TTGAATTCGTAGCATTGCGT+GGG | 0.502451 | 1_2:-25804397 | Msa0064560:intron |
| GGTGACAACCGTCGTTACTT+TGG | 0.503924 | 1_2:-25802908 | Msa0064560:CDS |
| TCCGCCTCCGCCACCGCCGG+TGG | 0.505322 | 1_2:+25805007 | None:intergenic |
| TTTGAATTCGTAGCATTGCG+TGG | 0.505388 | 1_2:-25804398 | Msa0064560:intron |
| GCGTGGGGCTGCAACATTGA+AGG | 0.507167 | 1_2:-25804381 | Msa0064560:CDS |
| GGTAGCATCGGCTGCCACAT+TGG | 0.507427 | 1_2:-25804793 | Msa0064560:CDS |
| CGGAGGCGGAGGGAAGACGG+TGG | 0.509388 | 1_2:-25804994 | Msa0064560:CDS |
| TTGAGGCTGCTGAGGCTATG+GGG | 0.510751 | 1_2:-25804755 | Msa0064560:CDS |
| GAACGTGACAAGAATTCCAT+TGG | 0.511728 | 1_2:+25807892 | None:intergenic |
| TGGGGAGGTGGCTGAAGGAG+AGG | 0.513502 | 1_2:-25804974 | Msa0064560:CDS |
| CACAGCAGTGGACCTCTGAA+TGG | 0.517311 | 1_2:-25807206 | Msa0064560:CDS |
| GACGGTGGGGAGGTGGCTGA+AGG | 0.519611 | 1_2:-25804979 | Msa0064560:CDS |
| TGAGCGTGATCACCTCGCTT+CGG | 0.520285 | 1_2:-25804730 | Msa0064560:CDS |
| GGAGGCGGAGGGAAGACGGT+GGG | 0.523154 | 1_2:-25804993 | Msa0064560:CDS |
| CCTACCAAATTCTTCTCCAC+AGG | 0.525363 | 1_2:+25804317 | None:intergenic |
| CTTCTTAAACGCACTCGCAC+AGG | 0.525523 | 1_2:-25804161 | Msa0064560:intron |
| GCCGTGAATGTGAGGTCTGC+CGG | 0.525794 | 1_2:-25804696 | Msa0064560:CDS |
| TTCATGGTCTGCTTCTGCCA+TGG | 0.527044 | 1_2:-25807872 | Msa0064560:CDS |
| TTATCAAAGAAATGCCGGCT+TGG | 0.527997 | 1_2:-25802955 | Msa0064560:CDS |
| TGTTGTGATTGTTGCTTGAA+CGG | 0.529425 | 1_2:+25805075 | None:intergenic |
| GGGCTGCAACATTGAAGGCA+AGG | 0.533544 | 1_2:-25804376 | Msa0064560:CDS |
| TGGCGTTATCAAAGAAATGC+CGG | 0.537650 | 1_2:-25802960 | Msa0064560:CDS |
| TGAGGCTGCTGAGGCTATGG+GGG | 0.541052 | 1_2:-25804754 | Msa0064560:CDS |
| GCCGGCAGACCTCACATTCA+CGG | 0.544455 | 1_2:+25804695 | None:intergenic |
| TAAATCTGTTGATACATGGT+GGG | 0.546492 | 1_2:-25802703 | Msa0064560:three_prime_UTR |
| CAAAGCTTTGGAGACTTCCA+TGG | 0.548578 | 1_2:+25807855 | None:intergenic |
| CGGCGATATTCAAACGTTGA+CGG | 0.551122 | 1_2:-25804676 | Msa0064560:CDS |
| CCTTATGTTAACTATGAACA+TGG | 0.554938 | 1_2:-25802728 | Msa0064560:three_prime_UTR |
| GGCTGCAATAGCCGCAACAG+CGG | 0.560843 | 1_2:+25804875 | None:intergenic |
| CCTTCTAGCAAGTGACGTCC+AGG | 0.563097 | 1_2:+25802932 | None:intergenic |
| TTGAAATCATCCATTTCAGA+AGG | 0.569576 | 1_2:+25807155 | None:intergenic |
| AACGTGACAAGAATTCCATT+GGG | 0.572460 | 1_2:+25807893 | None:intergenic |
| ACCTGACGAAGCAGCAGTTG+CGG | 0.576149 | 1_2:+25804854 | None:intergenic |
| AAGTGACGTCCAGGCCAAGC+CGG | 0.581177 | 1_2:+25802941 | None:intergenic |
| GGATCGTATCATGTCTCACT+CGG | 0.582016 | 1_2:-25807674 | Msa0064560:intron |
| GGTAATGGTAATGGTGGTGG+GGG | 0.586229 | 1_2:-25804290 | Msa0064560:CDS |
| TAGTATAGCAGCATTTGAAG+AGG | 0.586446 | 1_2:+25807789 | None:intergenic |
| TTATCTCTATTGCTGCTGAA+AGG | 0.588258 | 1_2:-25802799 | Msa0064560:CDS |
| GGCTGCAACATTGAAGGCAA+GGG | 0.588562 | 1_2:-25804375 | Msa0064560:CDS |
| TGCTCGTAAAGACGAGCAGA+TGG | 0.589082 | 1_2:-25804832 | Msa0064560:CDS |
| CCTGTGGAGAAGAATTTGGT+AGG | 0.590190 | 1_2:-25804317 | Msa0064560:CDS |
| TCAATGTGTTGAGGCTGCTG+AGG | 0.594159 | 1_2:-25804763 | Msa0064560:CDS |
| AATTTGGTAGGTAATGGTAA+TGG | 0.595486 | 1_2:-25804305 | Msa0064560:CDS |
| CGTCAACGTTTGAATATCGC+CGG | 0.596146 | 1_2:+25804677 | None:intergenic |
| ATCAAAGAGAATATGATGTG+TGG | 0.600476 | 1_2:-25802841 | Msa0064560:CDS |
| AACCATTTGAGATGTTTGAG+AGG | 0.601621 | 1_2:+25807699 | None:intergenic |
| CGGTGGCAGAGACTCTGTAA+TGG | 0.602908 | 1_2:+25805024 | None:intergenic |
| AAATCTGTTGATACATGGTG+GGG | 0.603647 | 1_2:-25802702 | Msa0064560:three_prime_UTR |
| TACAGAGTCTCTGCCACCGG+CGG | 0.605030 | 1_2:-25805020 | Msa0064560:CDS |
| CATTACAGAGTCTCTGCCAC+CGG | 0.605075 | 1_2:-25805023 | Msa0064560:CDS |
| GAATATGATGTGTGGACTCA+AGG | 0.605562 | 1_2:-25802833 | Msa0064560:CDS |
| AGAAACACCTCGTGACCCAA+TGG | 0.606803 | 1_2:-25807908 | Msa0064560:CDS |
| TGGAGTTGCAGCCGCTGTTG+CGG | 0.611144 | 1_2:-25804886 | Msa0064560:CDS |
| TGGTAATGGTAATGGTGGTG+GGG | 0.612875 | 1_2:-25804291 | Msa0064560:CDS |
| GGTAGCTGCTCAATGTGTTG+AGG | 0.614316 | 1_2:-25804772 | Msa0064560:CDS |
| GGTAATGGTAATGGTAATGG+TGG | 0.614443 | 1_2:-25804296 | Msa0064560:CDS |
| TGCTAGAAGATAGTGGAAGT+GGG | 0.615675 | 1_2:-25802634 | Msa0064560:three_prime_UTR |
| AGCTCCAATAGTAGCTTCAG+TGG | 0.618065 | 1_2:-25804251 | Msa0064560:CDS |
| AGTAGAGAATTGCTTGCCAG+AGG | 0.621265 | 1_2:-25804191 | Msa0064560:CDS |
| GCGTGATCACCTCGCTTCGG+TGG | 0.622627 | 1_2:-25804727 | Msa0064560:CDS |
| AAGAATTCCATTGGGTCACG+AGG | 0.624678 | 1_2:+25807901 | None:intergenic |
| TTAGCTCTGCCGTGAATGTG+AGG | 0.625902 | 1_2:-25804704 | Msa0064560:CDS |
| CAGCAACCGAAACAGCAGCA+TGG | 0.630431 | 1_2:+25804907 | None:intergenic |
| TGAAGAGTAGACATGTTGCT+GGG | 0.634135 | 1_2:-25803313 | Msa0064560:CDS |
| ATTTCAGAAGGTGAAACTGG+TGG | 0.639220 | 1_2:+25807167 | None:intergenic |
| TATTGCTGCTGTAATTCCTG+TGG | 0.643534 | 1_2:-25804333 | Msa0064560:CDS |
| TTATATAAACAGAATGAACC+AGG | 0.647298 | 1_2:-25803599 | Msa0064560:intron |
| CAGAGCTAACCACCGAAGCG+AGG | 0.648144 | 1_2:+25804718 | None:intergenic |
| TCTGTTAAAGATCCATTCAG+AGG | 0.654153 | 1_2:+25807194 | None:intergenic |
| GCAGATGGCGAAGACAGACA+TGG | 0.655202 | 1_2:-25804817 | Msa0064560:CDS |
| TGAATTCGTAGCATTGCGTG+GGG | 0.663115 | 1_2:-25804396 | Msa0064560:intron |
| GGACGTCACTTGCTAGAAGG+TGG | 0.663656 | 1_2:-25802929 | Msa0064560:CDS |
| GGTATAAATCTGTTGATACA+TGG | 0.673759 | 1_2:-25802707 | Msa0064560:three_prime_UTR |
| GGAAGACTATCACACAGCAG+TGG | 0.682507 | 1_2:-25807218 | Msa0064560:CDS |
| GGTTTGAAAACAATAACGCG+TGG | 0.695099 | 1_2:-25802887 | Msa0064560:CDS |
| ATAAATCTGTTGATACATGG+TGG | 0.747959 | 1_2:-25802704 | Msa0064560:three_prime_UTR |
| ACATTGAGCAGCTACCAATG+TGG | 0.752177 | 1_2:+25804779 | None:intergenic |
| GATGGCGAAGACAGACATGG+CGG | 0.768845 | 1_2:-25804814 | Msa0064560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATACATAATTTATTAA+TGG | - | chr1_2:25805037-25805056 | Msa0064560:CDS | 10.0% |
| !!! | TTTTATGTATTTTTTTTGAA+TGG | - | chr1_2:25807587-25807606 | Msa0064560:intron | 10.0% |
| !! | TAAAATACTATATGCAAAAA+TGG | + | chr1_2:25802536-25802555 | None:intergenic | 15.0% |
| !! | TTTAGTAAAATTATAGTCAA+TGG | + | chr1_2:25803398-25803417 | None:intergenic | 15.0% |
| !! | TCAGAATGATAATAAAATAA+GGG | + | chr1_2:25803722-25803741 | None:intergenic | 15.0% |
| !! | TTCAGAATGATAATAAAATA+AGG | + | chr1_2:25803723-25803742 | None:intergenic | 15.0% |
| !!! | CATAATTTAAGTTTACATAT+AGG | - | chr1_2:25804011-25804030 | Msa0064560:intron | 15.0% |
| !!! | TTGAAAATTTTCACTTTTAA+AGG | + | chr1_2:25804584-25804603 | None:intergenic | 15.0% |
| !!! | TATAGTTGTTGATTAATTTA+TGG | - | chr1_2:25805736-25805755 | Msa0064560:intron | 15.0% |
| !! | AATTGAAATGAAAAAAGAAA+AGG | + | chr1_2:25806612-25806631 | None:intergenic | 15.0% |
| !! | ATTAAAACTCTTATAATTGA+TGG | + | chr1_2:25806677-25806696 | None:intergenic | 15.0% |
| !!! | TTATTCTTTAAACTTTGAAA+TGG | - | chr1_2:25807002-25807021 | Msa0064560:intron | 15.0% |
| !! | ATTAACTATAAACATGTTAT+AGG | - | chr1_2:25807413-25807432 | Msa0064560:intron | 15.0% |
| !!! | TTTTGATCTATTTGTAAAAA+GGG | - | chr1_2:25807487-25807506 | Msa0064560:intron | 15.0% |
| !!! | TGTTTAAATTTTCCTAAAAA+AGG | - | chr1_2:25807940-25807959 | Msa0064560:CDS | 15.0% |
| !!! | GTTTAAATTTTCCTAAAAAA+GGG | - | chr1_2:25807941-25807960 | Msa0064560:CDS | 15.0% |
| !!! | GATTTTGATGTAAAATAATT+TGG | - | chr1_2:25807963-25807982 | Msa0064560:exon | 15.0% |
| !!! | TTTGTTTTGTTTTTCCATTT+TGG | + | chr1_2:25802218-25802237 | None:intergenic | 20.0% |
| !! | AAAAACAAAACAAACAACAA+TGG | - | chr1_2:25802224-25802243 | Msa0064560:three_prime_UTR | 20.0% |
| !! | TACATCTTTCTTAATTTCAT+AGG | - | chr1_2:25803040-25803059 | Msa0064560:intron | 20.0% |
| !!! | TTGTTTTTCTCAAAACTTTT+TGG | - | chr1_2:25803121-25803140 | Msa0064560:intron | 20.0% |
| !!! | TGTTTTTCTCAAAACTTTTT+GGG | - | chr1_2:25803122-25803141 | Msa0064560:intron | 20.0% |
| !!! | TTTAAAATTCAAGTCATGTT+TGG | + | chr1_2:25803309-25803328 | None:intergenic | 20.0% |
| !!! | TCCAAATTAGCTTTAATTAA+AGG | - | chr1_2:25803455-25803474 | Msa0064560:intron | 20.0% |
| !!! | CCAAATTAGCTTTAATTAAA+GGG | - | chr1_2:25803456-25803475 | Msa0064560:intron | 20.0% |
| !! | TTTAGAAATTTAGATGAAGA+GGG | + | chr1_2:25803697-25803716 | None:intergenic | 20.0% |
| !!! | TTTTAGAAATTTAGATGAAG+AGG | + | chr1_2:25803698-25803717 | None:intergenic | 20.0% |
| !!! | AAAGGGTATATTAGTAATTT+TGG | - | chr1_2:25804371-25804390 | Msa0064560:CDS | 20.0% |
| !!! | AAGGGTATATTAGTAATTTT+GGG | - | chr1_2:25804372-25804391 | Msa0064560:CDS | 20.0% |
| !! | CTATAATTACACATAAAAGA+GGG | + | chr1_2:25804613-25804632 | None:intergenic | 20.0% |
| !! | ACTATAATTACACATAAAAG+AGG | + | chr1_2:25804614-25804633 | None:intergenic | 20.0% |
| !!! | GCTGTTTTATTTTTTGTAAA+GGG | + | chr1_2:25804639-25804658 | None:intergenic | 20.0% |
| !!! | TGCTGTTTTATTTTTTGTAA+AGG | + | chr1_2:25804640-25804659 | None:intergenic | 20.0% |
| !!! | TTTTTGTGATATATATTGGT+GGG | + | chr1_2:25804962-25804981 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGATATATATTGG+TGG | + | chr1_2:25804963-25804982 | None:intergenic | 20.0% |
| !!! | GCATTTTTTGTGATATATAT+TGG | + | chr1_2:25804966-25804985 | None:intergenic | 20.0% |
| !! | GATGCAAATAAATCATAAAA+AGG | - | chr1_2:25805563-25805582 | Msa0064560:intron | 20.0% |
| !! | AGAAAGGAAAAAAAAAACAA+TGG | - | chr1_2:25805699-25805718 | Msa0064560:intron | 20.0% |
| !! | AATATTCCAAACTTCTTTAA+GGG | + | chr1_2:25805817-25805836 | None:intergenic | 20.0% |
| !!! | TCTAATTTGAAACTAGAATT+CGG | + | chr1_2:25806158-25806177 | None:intergenic | 20.0% |
| !! | GGTAATAATTTAAGAAACAA+TGG | + | chr1_2:25806372-25806391 | None:intergenic | 20.0% |
| !!! | GTGTTTCTTTTTATGTTTAA+AGG | - | chr1_2:25806482-25806501 | Msa0064560:intron | 20.0% |
| !!! | TTCTTTTTATGTTTAAAGGA+TGG | - | chr1_2:25806486-25806505 | Msa0064560:intron | 20.0% |
| !! | ATAATTCTCAAATATATACC+TGG | + | chr1_2:25806588-25806607 | None:intergenic | 20.0% |
| !! | TTATCATACTTTAACTGATT+TGG | - | chr1_2:25806935-25806954 | Msa0064560:intron | 20.0% |
| !!! | GTTTTGATCTATTTGTAAAA+AGG | - | chr1_2:25807486-25807505 | Msa0064560:intron | 20.0% |
| !!! | TTTTCTTTCTTTCATTGATA+TGG | - | chr1_2:25807660-25807679 | Msa0064560:intron | 20.0% |
| !! | TTAAAACAAAAGAATTCCTT+GGG | + | chr1_2:25807859-25807878 | None:intergenic | 20.0% |
| !! | GTGACAAAAAATGGAATTTT+GGG | + | chr1_2:25802783-25802802 | None:intergenic | 25.0% |
| !! | AGTGACAAAAAATGGAATTT+TGG | + | chr1_2:25802784-25802803 | None:intergenic | 25.0% |
| ! | AATTTGGAAGTGACAAAAAA+TGG | + | chr1_2:25802792-25802811 | None:intergenic | 25.0% |
| ! | TAAAACCTTGGATACAAATT+TGG | + | chr1_2:25802808-25802827 | None:intergenic | 25.0% |
| !!! | AAGGTTTTAAATTGATGTTG+CGG | - | chr1_2:25802819-25802838 | Msa0064560:CDS | 25.0% |
| ! | TGTGATTCTTTGTAATATCA+AGG | + | chr1_2:25802856-25802875 | None:intergenic | 25.0% |
| ! | ATCTTTCTTAATTTCATAGG+TGG | - | chr1_2:25803043-25803062 | Msa0064560:intron | 25.0% |
| ! | TGTTACCAACAAACATAAAT+TGG | - | chr1_2:25803218-25803237 | Msa0064560:intron | 25.0% |
| ! | CCCTTTAATTAAAGCTAATT+TGG | + | chr1_2:25803459-25803478 | None:intergenic | 25.0% |
| !!! | ATTCAATTGACGATTTTAGT+AGG | + | chr1_2:25803794-25803813 | None:intergenic | 25.0% |
| !! | TTGATTTAAGTTTACGTAGA+AGG | - | chr1_2:25803984-25804003 | Msa0064560:intron | 25.0% |
| !! | TGATTTAAGTTTACGTAGAA+GGG | - | chr1_2:25803985-25804004 | Msa0064560:intron | 25.0% |
| !! | AGGGTATATTAGTAATTTTG+GGG | - | chr1_2:25804373-25804392 | Msa0064560:CDS | 25.0% |
| ! | CTTAACGATTTGATTCTTAA+TGG | + | chr1_2:25804516-25804535 | None:intergenic | 25.0% |
| ! | AAAACCATGTTTATCCATAA+GGG | + | chr1_2:25804832-25804851 | None:intergenic | 25.0% |
| ! | AAAAACCATGTTTATCCATA+AGG | + | chr1_2:25804833-25804852 | None:intergenic | 25.0% |
| ! | AGCAATAACAAACTTTGTAT+TGG | + | chr1_2:25804867-25804886 | None:intergenic | 25.0% |
| !! | TGACTGACTTAAATAAAGAA+AGG | - | chr1_2:25805683-25805702 | Msa0064560:intron | 25.0% |
| ! | AAGGAAAAAAAAAACAATGG+TGG | - | chr1_2:25805702-25805721 | Msa0064560:intron | 25.0% |
| ! | TGATTAATTTATGGTGTTTG+TGG | - | chr1_2:25805745-25805764 | Msa0064560:intron | 25.0% |
| ! | CAATATTCCAAACTTCTTTA+AGG | + | chr1_2:25805818-25805837 | None:intergenic | 25.0% |
| !!! | AAAGTTGATTTTGACATCTT+TGG | + | chr1_2:25806220-25806239 | None:intergenic | 25.0% |
| ! | CATAGACTTAAGTCTATAAT+TGG | + | chr1_2:25806262-25806281 | None:intergenic | 25.0% |
| !! | CTTCAAATTTAAAGTGTGTT+TGG | - | chr1_2:25806293-25806312 | Msa0064560:intron | 25.0% |
| ! | ATGACAACATTGATAAATGT+CGG | + | chr1_2:25806322-25806341 | None:intergenic | 25.0% |
| !! | TTGATTTGATAATTGATTGC+AGG | - | chr1_2:25806517-25806536 | Msa0064560:intron | 25.0% |
| ! | TTATATAAACAGAATGAACC+AGG | - | chr1_2:25806567-25806586 | Msa0064560:intron | 25.0% |
| !! | ATAATTGATGGCCAAATAAT+TGG | + | chr1_2:25806665-25806684 | None:intergenic | 25.0% |
| ! | ACTACAATTTGTAGATTTCT+AGG | + | chr1_2:25806792-25806811 | None:intergenic | 25.0% |
| !!! | ACTCTTTTTCTTTTTTGTGA+TGG | + | chr1_2:25806880-25806899 | None:intergenic | 25.0% |
| ! | TTAAAGTATGATAAGAGAAG+GGG | + | chr1_2:25806929-25806948 | None:intergenic | 25.0% |
| ! | GTTAAAGTATGATAAGAGAA+GGG | + | chr1_2:25806930-25806949 | None:intergenic | 25.0% |
| ! | AGTTAAAGTATGATAAGAGA+AGG | + | chr1_2:25806931-25806950 | None:intergenic | 25.0% |
| !!! | AAACTTTGAAATGGATCAAA+AGG | - | chr1_2:25807011-25807030 | Msa0064560:intron | 25.0% |
| ! | CTTAAAACAAAAGAATTCCT+TGG | + | chr1_2:25807860-25807879 | None:intergenic | 25.0% |
| !!! | CAAGGAATTCTTTTGTTTTA+AGG | - | chr1_2:25807858-25807877 | Msa0064560:CDS | 25.0% |
| ! | TCTACAGAAAATCATTGTTA+TGG | - | chr1_2:25807888-25807907 | Msa0064560:CDS | 25.0% |
| !!! | TACATCAAAATCCCTTTTTT+AGG | + | chr1_2:25807955-25807974 | None:intergenic | 25.0% |
| TCTAAACATCAACACCAAAA+TGG | - | chr1_2:25802201-25802220 | Msa0064560:three_prime_UTR | 30.0% | |
| ! | TTGTTGAGTTTGTTTGAAAG+AGG | + | chr1_2:25802355-25802374 | None:intergenic | 30.0% |
| GAGTCTATTATAACTGTTTC+TGG | - | chr1_2:25802424-25802443 | Msa0064560:three_prime_UTR | 30.0% | |
| ! | TCAAACATCTCAAATGGTTT+TGG | - | chr1_2:25802471-25802490 | Msa0064560:three_prime_UTR | 30.0% |
| ACAAAGAACATTTGATATGC+TGG | - | chr1_2:25802590-25802609 | Msa0064560:three_prime_UTR | 30.0% | |
| ! | GCAACATCAATTTAAAACCT+TGG | + | chr1_2:25802820-25802839 | None:intergenic | 30.0% |
| TTGAAATCATCCATTTCAGA+AGG | + | chr1_2:25803014-25803033 | None:intergenic | 30.0% | |
| !! | TTCTGAAATGGATGATTTCA+AGG | - | chr1_2:25803013-25803032 | Msa0064560:intron | 30.0% |
| AAAAACCAAACAAACCAACA+TGG | + | chr1_2:25803102-25803121 | None:intergenic | 30.0% | |
| GTCATCCAATTTATGTTTGT+TGG | + | chr1_2:25803226-25803245 | None:intergenic | 30.0% | |
| ! | TACTGATTATTACTGTCTCT+GGG | + | chr1_2:25803250-25803269 | None:intergenic | 30.0% |
| ! | TTACTGATTATTACTGTCTC+TGG | + | chr1_2:25803251-25803270 | None:intergenic | 30.0% |
| TAGTGCTAAAAACAAAGCTT+TGG | + | chr1_2:25803374-25803393 | None:intergenic | 30.0% | |
| GGTGTAACTATGATTATATG+GGG | + | chr1_2:25803637-25803656 | None:intergenic | 30.0% | |
| GGGTGTAACTATGATTATAT+GGG | + | chr1_2:25803638-25803657 | None:intergenic | 30.0% | |
| TGGGTGTAACTATGATTATA+TGG | + | chr1_2:25803639-25803658 | None:intergenic | 30.0% | |
| ATTAATCGAGTACGTATCAA+TGG | + | chr1_2:25803828-25803847 | None:intergenic | 30.0% | |
| ! | CGATGTTGTTAATTTTACCA+TGG | - | chr1_2:25803911-25803930 | Msa0064560:intron | 30.0% |
| ACTACAACTATAAACATCCA+TGG | + | chr1_2:25803931-25803950 | None:intergenic | 30.0% | |
| AGTCACAGCTTCATTAAAAT+TGG | - | chr1_2:25804693-25804712 | Msa0064560:CDS | 30.0% | |
| !! | AATCAAAGGGTAATTTTGGT+TGG | + | chr1_2:25804728-25804747 | None:intergenic | 30.0% |
| ! | AAGGAATCAAAGGGTAATTT+TGG | + | chr1_2:25804732-25804751 | None:intergenic | 30.0% |
| TGGCTAAATAAGGAATCAAA+GGG | + | chr1_2:25804741-25804760 | None:intergenic | 30.0% | |
| ATGGCTAAATAAGGAATCAA+AGG | + | chr1_2:25804742-25804761 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTTTGTTTCCTTGA+TGG | + | chr1_2:25804761-25804780 | None:intergenic | 30.0% |
| GCAATTGCATTTATTGCTAA+TGG | - | chr1_2:25804804-25804823 | Msa0064560:CDS | 30.0% | |
| AAACCATGTTTATCCATAAG+GGG | + | chr1_2:25804831-25804850 | None:intergenic | 30.0% | |
| TTGTTAGCTGTTACAACTAT+AGG | + | chr1_2:25804908-25804927 | None:intergenic | 30.0% | |
| AAAAGAAAAAGGAGGAAACA+AGG | - | chr1_2:25805219-25805238 | Msa0064560:intron | 30.0% | |
| AAAGAAAAAGGAGGAAACAA+GGG | - | chr1_2:25805220-25805239 | Msa0064560:intron | 30.0% | |
| ! | ATTAGCATTTTCAGTCTCAT+TGG | - | chr1_2:25805630-25805649 | Msa0064560:intron | 30.0% |
| ! | AATTTGGTAGGTAATGGTAA+TGG | - | chr1_2:25805861-25805880 | Msa0064560:intron | 30.0% |
| AAAGTGAACTGAATGTAAAG+TGG | - | chr1_2:25806073-25806092 | Msa0064560:intron | 30.0% | |
| GAATGTAAAGTGGTTTAAAG+TGG | - | chr1_2:25806083-25806102 | Msa0064560:intron | 30.0% | |
| ! | TAAAGTGGTTTAAAGTGGTT+TGG | - | chr1_2:25806088-25806107 | Msa0064560:intron | 30.0% |
| ATCAACTTTGCTTCTTTCAA+TGG | - | chr1_2:25806231-25806250 | Msa0064560:intron | 30.0% | |
| AAACAATGGAAGTGATTGAA+TGG | + | chr1_2:25806358-25806377 | None:intergenic | 30.0% | |
| ! | CTGTATGTGGATTAAAGAAA+AGG | - | chr1_2:25806434-25806453 | Msa0064560:intron | 30.0% |
| ! | AAACTGACACAATTTTCCAA+TGG | + | chr1_2:25806549-25806568 | None:intergenic | 30.0% |
| CTTGACTATGACCAATTATT+TGG | - | chr1_2:25806651-25806670 | Msa0064560:intron | 30.0% | |
| GATGAATAAGAATCTGATAG+TGG | - | chr1_2:25806697-25806716 | Msa0064560:intron | 30.0% | |
| !! | TTAGATCCTCTTTTTGTTTC+AGG | - | chr1_2:25806818-25806837 | Msa0064560:intron | 30.0% |
| !! | TCATACTTTAACTGATTTGG+AGG | - | chr1_2:25806938-25806957 | Msa0064560:intron | 30.0% |
| ! | TTTTCAAACCAAAGTAACGA+CGG | + | chr1_2:25807269-25807288 | None:intergenic | 30.0% |
| ATCAAAGAGAATATGATGTG+TGG | - | chr1_2:25807325-25807344 | Msa0064560:intron | 30.0% | |
| CCATGTTCATAGTTAACATA+AGG | + | chr1_2:25807441-25807460 | None:intergenic | 30.0% | |
| CCTTATGTTAACTATGAACA+TGG | - | chr1_2:25807438-25807457 | Msa0064560:intron | 30.0% | |
| GGTATAAATCTGTTGATACA+TGG | - | chr1_2:25807459-25807478 | Msa0064560:intron | 30.0% | |
| ATAAATCTGTTGATACATGG+TGG | - | chr1_2:25807462-25807481 | Msa0064560:intron | 30.0% | |
| TAAATCTGTTGATACATGGT+GGG | - | chr1_2:25807463-25807482 | Msa0064560:intron | 30.0% | |
| GTTATTATGCTAGAAGATAG+TGG | - | chr1_2:25807525-25807544 | Msa0064560:intron | 30.0% | |
| !! | TGGAAAGAAAAAGAGTATCT+TGG | - | chr1_2:25807680-25807699 | Msa0064560:CDS | 30.0% |
| TGGCAGTCAAAAAGAAAAAA+GGG | - | chr1_2:25807706-25807725 | Msa0064560:CDS | 30.0% | |
| ! | TGGTTTAAGCTTTTCTTGAT+TGG | - | chr1_2:25807825-25807844 | Msa0064560:CDS | 30.0% |
| ! | AAGCTTTTCTTGATTGGATT+TGG | - | chr1_2:25807831-25807850 | Msa0064560:CDS | 30.0% |
| ATTCTTCTACTTCTGCTTTA+GGG | - | chr1_2:25807911-25807930 | Msa0064560:CDS | 30.0% | |
| AACGTGACAAGAATTCCATT+GGG | + | chr1_2:25802276-25802295 | None:intergenic | 35.0% | |
| ! | TGAGTTTGTTTGAAAGAGGA+GGG | + | chr1_2:25802351-25802370 | None:intergenic | 35.0% |
| ! | TTGAGTTTGTTTGAAAGAGG+AGG | + | chr1_2:25802352-25802371 | None:intergenic | 35.0% |
| TAGTATAGCAGCATTTGAAG+AGG | + | chr1_2:25802380-25802399 | None:intergenic | 35.0% | |
| ! | GCTATACTAGAAGATTTTGC+TGG | - | chr1_2:25802391-25802410 | Msa0064560:three_prime_UTR | 35.0% |
| GAGAGGAAGCAAAAGAAAAA+GGG | + | chr1_2:25802453-25802472 | None:intergenic | 35.0% | |
| TGAGAGGAAGCAAAAGAAAA+AGG | + | chr1_2:25802454-25802473 | None:intergenic | 35.0% | |
| TTCCTCTCAAACATCTCAAA+TGG | - | chr1_2:25802465-25802484 | Msa0064560:three_prime_UTR | 35.0% | |
| ! | AACCATTTGAGATGTTTGAG+AGG | + | chr1_2:25802470-25802489 | None:intergenic | 35.0% |
| !! | TTTTGGGAGACAAAAGAAAG+TGG | + | chr1_2:25802767-25802786 | None:intergenic | 35.0% |
| CACTTCCAAATTTGTATCCA+AGG | - | chr1_2:25802800-25802819 | Msa0064560:CDS | 35.0% | |
| TGTAATATCAAGGATCACGA+TGG | + | chr1_2:25802846-25802865 | None:intergenic | 35.0% | |
| !! | TTGATCTGAGACAAGTGTTT+TGG | - | chr1_2:25802891-25802910 | Msa0064560:CDS | 35.0% |
| TCTGTTAAAGATCCATTCAG+AGG | + | chr1_2:25802975-25802994 | None:intergenic | 35.0% | |
| ACCTTAACAAACAACCATGT+TGG | - | chr1_2:25803085-25803104 | Msa0064560:intron | 35.0% | |
| ! | ACCAACATGGTTGTTTGTTA+AGG | + | chr1_2:25803089-25803108 | None:intergenic | 35.0% |
| !! | AACAACCATGTTGGTTTGTT+TGG | - | chr1_2:25803094-25803113 | Msa0064560:intron | 35.0% |
| AAAGCTGAAATTGGTACTAG+TGG | + | chr1_2:25803195-25803214 | None:intergenic | 35.0% | |
| GTAACAGAGAAAGCTGAAAT+TGG | + | chr1_2:25803204-25803223 | None:intergenic | 35.0% | |
| ! | TTAGATGAAGAGGGCAATTT+TGG | + | chr1_2:25803688-25803707 | None:intergenic | 35.0% |
| ! | TATTGATTGCATATCCATGG+TGG | + | chr1_2:25803771-25803790 | None:intergenic | 35.0% |
| !! | AGGTATTGATTGCATATCCA+TGG | + | chr1_2:25803774-25803793 | None:intergenic | 35.0% |
| ACACCTAAACTCAGTTTACT+TGG | - | chr1_2:25804081-25804100 | Msa0064560:intron | 35.0% | |
| ACACCAAGTAAACTGAGTTT+AGG | + | chr1_2:25804087-25804106 | None:intergenic | 35.0% | |
| TGTGCAGTGAACATGAATAA+AGG | - | chr1_2:25804353-25804372 | Msa0064560:CDS | 35.0% | |
| GTGCAGTGAACATGAATAAA+GGG | - | chr1_2:25804354-25804373 | Msa0064560:CDS | 35.0% | |
| !!! | AGTAATTTTGGGGTGTAACT+TGG | - | chr1_2:25804383-25804402 | Msa0064560:CDS | 35.0% |
| GGTGTAACTTGGATTATTTG+AGG | - | chr1_2:25804394-25804413 | Msa0064560:intron | 35.0% | |
| ! | AACTTGGATTATTTGAGGTG+TGG | - | chr1_2:25804399-25804418 | Msa0064560:intron | 35.0% |
| ! | ACTTGGATTATTTGAGGTGT+GGG | - | chr1_2:25804400-25804419 | Msa0064560:intron | 35.0% |
| ! | ACTCGACTTTAGTTACCTTT+TGG | - | chr1_2:25804461-25804480 | Msa0064560:intron | 35.0% |
| ! | CTCGACTTTAGTTACCTTTT+GGG | - | chr1_2:25804462-25804481 | Msa0064560:intron | 35.0% |
| AAATGTAGAGTTCTCCCAAA+AGG | + | chr1_2:25804479-25804498 | None:intergenic | 35.0% | |
| ! | GATTCCTTATTTAGCCATCA+AGG | - | chr1_2:25804744-25804763 | Msa0064560:CDS | 35.0% |
| ! | GTTTCCTTGATGGCTAAATA+AGG | + | chr1_2:25804751-25804770 | None:intergenic | 35.0% |
| ! | ATTGCTTTGTTCAGAATCTC+AGG | - | chr1_2:25804881-25804900 | Msa0064560:CDS | 35.0% |
| ! | TGTTGTGATTGTTGCTTGAA+CGG | + | chr1_2:25805094-25805113 | None:intergenic | 35.0% |
| TTTCAGTCTCATTGGAATGT+TGG | - | chr1_2:25805638-25805657 | Msa0064560:intron | 35.0% | |
| AATTCCTGTGGAGAAGAATT+TGG | - | chr1_2:25805845-25805864 | Msa0064560:intron | 35.0% | |
| GAGAAGAATTTGGTAGGTAA+TGG | - | chr1_2:25805855-25805874 | Msa0064560:intron | 35.0% | |
| !! | GTAGGTAATGGTAATGGTAA+TGG | - | chr1_2:25805867-25805886 | Msa0064560:intron | 35.0% |
| TGCACCTGAAGAAAATTTCT+TGG | - | chr1_2:25805944-25805963 | Msa0064560:intron | 35.0% | |
| GCACCTGAAGAAAATTTCTT+GGG | - | chr1_2:25805945-25805964 | Msa0064560:intron | 35.0% | |
| ! | ATGCCCAAGAAATTTTCTTC+AGG | + | chr1_2:25805951-25805970 | None:intergenic | 35.0% |
| AACTTTGCTTCTTTCAATGG+TGG | - | chr1_2:25806234-25806253 | Msa0064560:intron | 35.0% | |
| GAAAGAAGTGACTAAAGTGA+GGG | - | chr1_2:25806719-25806738 | Msa0064560:intron | 35.0% | |
| ! | AGAACGATGTGATGATGTTA+AGG | - | chr1_2:25806747-25806766 | Msa0064560:intron | 35.0% |
| ! | GAACGATGTGATGATGTTAA+GGG | - | chr1_2:25806748-25806767 | Msa0064560:intron | 35.0% |
| GCATAACCTGAAACAAAAAG+AGG | + | chr1_2:25806827-25806846 | None:intergenic | 35.0% | |
| !! | TACTTTAACTGATTTGGAGG+TGG | - | chr1_2:25806941-25806960 | Msa0064560:intron | 35.0% |
| !! | ACTTTAACTGATTTGGAGGT+GGG | - | chr1_2:25806942-25806961 | Msa0064560:intron | 35.0% |
| ! | TTTTTCGCAGATGTTGTGAT+TGG | - | chr1_2:25807186-25807205 | Msa0064560:CDS | 35.0% |
| TTATCTCTATTGCTGCTGAA+AGG | - | chr1_2:25807367-25807386 | Msa0064560:intron | 35.0% | |
| AAATCTGTTGATACATGGTG+GGG | - | chr1_2:25807464-25807483 | Msa0064560:intron | 35.0% | |
| !!! | CTTTTTTCTTTTTGACTGCC+AGG | + | chr1_2:25807707-25807726 | None:intergenic | 35.0% |
| CTGGCAGTCAAAAAGAAAAA+AGG | - | chr1_2:25807705-25807724 | Msa0064560:CDS | 35.0% | |
| !! | CTTTTGCTGCTTATCAATGT+TGG | - | chr1_2:25807805-25807824 | Msa0064560:CDS | 35.0% |
| GATTCTTCTACTTCTGCTTT+AGG | - | chr1_2:25807910-25807929 | Msa0064560:CDS | 35.0% | |
| GAACGTGACAAGAATTCCAT+TGG | + | chr1_2:25802277-25802296 | None:intergenic | 40.0% | |
| TGGAATTCTTGTCACGTTCA+TGG | - | chr1_2:25802278-25802297 | Msa0064560:three_prime_UTR | 40.0% | |
| CACTCGGTATGTAGTCTTTA+AGG | - | chr1_2:25802508-25802527 | Msa0064560:three_prime_UTR | 40.0% | |
| GATAGTCTTCCTGATGTTCT+TGG | + | chr1_2:25802939-25802958 | None:intergenic | 40.0% | |
| ATTTCAGAAGGTGAAACTGG+TGG | + | chr1_2:25803002-25803021 | None:intergenic | 40.0% | |
| ! | ACCAGTTTCACCTTCTGAAA+TGG | - | chr1_2:25803001-25803020 | Msa0064560:intron | 40.0% |
| TCCATTTCAGAAGGTGAAAC+TGG | + | chr1_2:25803005-25803024 | None:intergenic | 40.0% | |
| TAACAGTACACTGTACAGTG+AGG | + | chr1_2:25803168-25803187 | None:intergenic | 40.0% | |
| TGGCTGTTTGCATTGAAGAA+AGG | + | chr1_2:25803289-25803308 | None:intergenic | 40.0% | |
| ! | TATTGCTAATGGACCCCTTA+TGG | - | chr1_2:25804815-25804834 | Msa0064560:CDS | 40.0% |
| GGAGAGGAAGGAAAAGAAAA+AGG | - | chr1_2:25805208-25805227 | Msa0064560:intron | 40.0% | |
| GAGGAAGGAAAAGAAAAAGG+AGG | - | chr1_2:25805211-25805230 | Msa0064560:intron | 40.0% | |
| TTTGAATTCGTAGCATTGCG+TGG | - | chr1_2:25805768-25805787 | Msa0064560:intron | 40.0% | |
| TTGAATTCGTAGCATTGCGT+GGG | - | chr1_2:25805769-25805788 | Msa0064560:intron | 40.0% | |
| TATTGCTGCTGTAATTCCTG+TGG | - | chr1_2:25805833-25805852 | Msa0064560:intron | 40.0% | |
| !! | GGTAATGGTAATGGTAATGG+TGG | - | chr1_2:25805870-25805889 | Msa0064560:intron | 40.0% |
| !! | AATGGTAATGGTAATGGTGG+TGG | - | chr1_2:25805873-25805892 | Msa0064560:intron | 40.0% |
| !! | ATGGTAATGGTAATGGTGGT+GGG | - | chr1_2:25805874-25805893 | Msa0064560:intron | 40.0% |
| TTTAAGAAGCTCACAACCTC+TGG | + | chr1_2:25805994-25806013 | None:intergenic | 40.0% | |
| TGACACTCAGACGTAAATAC+TGG | + | chr1_2:25806393-25806412 | None:intergenic | 40.0% | |
| TTACGTCTGAGTGTCATGTT+TGG | - | chr1_2:25806397-25806416 | Msa0064560:intron | 40.0% | |
| GTGTTCTATGCTTCTGTATG+TGG | - | chr1_2:25806421-25806440 | Msa0064560:intron | 40.0% | |
| GGAAAGAAGTGACTAAAGTG+AGG | - | chr1_2:25806718-25806737 | Msa0064560:intron | 40.0% | |
| ATGAAGAGTAGACATGTTGC+TGG | - | chr1_2:25806852-25806871 | Msa0064560:intron | 40.0% | |
| TGAAGAGTAGACATGTTGCT+GGG | - | chr1_2:25806853-25806872 | Msa0064560:intron | 40.0% | |
| !! | AGGTGGGTCTTGTTTCATTT+GGG | - | chr1_2:25806958-25806977 | Msa0064560:intron | 40.0% |
| ACTCATCCTTTGATCCATCA+AGG | - | chr1_2:25807063-25807082 | Msa0064560:intron | 40.0% | |
| CTCATCCTTTGATCCATCAA+GGG | - | chr1_2:25807064-25807083 | Msa0064560:intron | 40.0% | |
| TGGCGTTATCAAAGAAATGC+CGG | - | chr1_2:25807206-25807225 | Msa0064560:CDS | 40.0% | |
| ! | TTATCAAAGAAATGCCGGCT+TGG | - | chr1_2:25807211-25807230 | Msa0064560:CDS | 40.0% |
| GGTTTGAAAACAATAACGCG+TGG | - | chr1_2:25807279-25807298 | Msa0064560:intron | 40.0% | |
| GAATATGATGTGTGGACTCA+AGG | - | chr1_2:25807333-25807352 | Msa0064560:intron | 40.0% | |
| !! | ATGCTAGAAGATAGTGGAAG+TGG | - | chr1_2:25807531-25807550 | Msa0064560:intron | 40.0% |
| !! | TGCTAGAAGATAGTGGAAGT+GGG | - | chr1_2:25807532-25807551 | Msa0064560:intron | 40.0% |
| GAAGTGGGTCTCTTTAATCT+TGG | - | chr1_2:25807547-25807566 | Msa0064560:intron | 40.0% | |
| TGGGTCTCTTTAATCTTGGA+GGG | - | chr1_2:25807551-25807570 | Msa0064560:intron | 40.0% | |
| !! | GAAAAAGAGTATCTTGGACC+TGG | - | chr1_2:25807686-25807705 | Msa0064560:CDS | 40.0% |
| TTGATTGGATTTGGATCCCA+AGG | - | chr1_2:25807840-25807859 | Msa0064560:CDS | 40.0% | |
| AAGAATTCCATTGGGTCACG+AGG | + | chr1_2:25802268-25802287 | None:intergenic | 45.0% | |
| !! | CAAAGCTTTGGAGACTTCCA+TGG | + | chr1_2:25802314-25802333 | None:intergenic | 45.0% |
| TTGAGCTGGAGACAAAGCTT+TGG | + | chr1_2:25802326-25802345 | None:intergenic | 45.0% | |
| GGATCGTATCATGTCTCACT+CGG | - | chr1_2:25802492-25802511 | Msa0064560:three_prime_UTR | 45.0% | |
| AGTGTTTGTCAGTTTCGTCG+CGG | + | chr1_2:25802566-25802585 | None:intergenic | 45.0% | |
| ! | TTGATATGCTGGACTGACTC+AGG | - | chr1_2:25802601-25802620 | Msa0064560:three_prime_UTR | 45.0% |
| !!! | GTGTTTTGGTATTGTGCAGC+AGG | - | chr1_2:25802905-25802924 | Msa0064560:CDS | 45.0% |
| ! | TTTTGGTATTGTGCAGCAGG+AGG | - | chr1_2:25802908-25802927 | Msa0064560:CDS | 45.0% |
| ! | GAGGTATCTCCAAGAACATC+AGG | - | chr1_2:25802927-25802946 | Msa0064560:CDS | 45.0% |
| ACATTCACACGTGTCAGACA+TGG | + | chr1_2:25803496-25803515 | None:intergenic | 45.0% | |
| ! | GTGGTTTGTGGGTGAAAAAG+GGG | + | chr1_2:25803752-25803771 | None:intergenic | 45.0% |
| ! | GGTGGTTTGTGGGTGAAAAA+GGG | + | chr1_2:25803753-25803772 | None:intergenic | 45.0% |
| ! | TGGTGGTTTGTGGGTGAAAA+AGG | + | chr1_2:25803754-25803773 | None:intergenic | 45.0% |
| ! | TTTTCACCCACAAACCACCA+TGG | - | chr1_2:25803754-25803773 | Msa0064560:intron | 45.0% |
| ! | GCATATCCATGGTGGTTTGT+GGG | + | chr1_2:25803763-25803782 | None:intergenic | 45.0% |
| TGCATATCCATGGTGGTTTG+TGG | + | chr1_2:25803764-25803783 | None:intergenic | 45.0% | |
| GGACCCCTTATGGATAAACA+TGG | - | chr1_2:25804825-25804844 | Msa0064560:CDS | 45.0% | |
| ACATTGAGCAGCTACCAATG+TGG | + | chr1_2:25805390-25805409 | None:intergenic | 45.0% | |
| CGTCAACGTTTGAATATCGC+CGG | + | chr1_2:25805492-25805511 | None:intergenic | 45.0% | |
| CGGCGATATTCAAACGTTGA+CGG | - | chr1_2:25805490-25805509 | Msa0064560:intron | 45.0% | |
| TGAATTCGTAGCATTGCGTG+GGG | - | chr1_2:25805770-25805789 | Msa0064560:intron | 45.0% | |
| CAAGGGCCCTTAAAGAAGTT+TGG | - | chr1_2:25805808-25805827 | Msa0064560:intron | 45.0% | |
| CCTACCAAATTCTTCTCCAC+AGG | + | chr1_2:25805852-25805871 | None:intergenic | 45.0% | |
| CCTGTGGAGAAGAATTTGGT+AGG | - | chr1_2:25805849-25805868 | Msa0064560:intron | 45.0% | |
| !! | TGGTAATGGTAATGGTGGTG+GGG | - | chr1_2:25805875-25805894 | Msa0064560:intron | 45.0% |
| AGCTCCAATAGTAGCTTCAG+TGG | - | chr1_2:25805915-25805934 | Msa0064560:intron | 45.0% | |
| TTCGCCACTGAAGCTACTAT+TGG | + | chr1_2:25805922-25805941 | None:intergenic | 45.0% | |
| AGTAGAGAATTGCTTGCCAG+AGG | - | chr1_2:25805975-25805994 | Msa0064560:intron | 45.0% | |
| GGTTTGGATCGCTAAACACA+AGG | - | chr1_2:25806104-25806123 | Msa0064560:intron | 45.0% | |
| TGATTGCAGGTGAACTCCAT+TGG | - | chr1_2:25806530-25806549 | Msa0064560:intron | 45.0% | |
| !! | GAGGTGGGTCTTGTTTCATT+TGG | - | chr1_2:25806957-25806976 | Msa0064560:intron | 45.0% |
| !! | GGTGGGTCTTGTTTCATTTG+GGG | - | chr1_2:25806959-25806978 | Msa0064560:intron | 45.0% |
| TCAAAGGATGAGTGTGAAGG+TGG | + | chr1_2:25807056-25807075 | None:intergenic | 45.0% | |
| GGATCAAAGGATGAGTGTGA+AGG | + | chr1_2:25807059-25807078 | None:intergenic | 45.0% | |
| ! | TCGAACCCTTGATGGATCAA+AGG | + | chr1_2:25807072-25807091 | None:intergenic | 45.0% |
| TCCATCAAGGGTTCGATCAT+TGG | - | chr1_2:25807076-25807095 | Msa0064560:intron | 45.0% | |
| TTGTCTGCAATTGCGTGCAA+AGG | - | chr1_2:25807129-25807148 | Msa0064560:intron | 45.0% | |
| ! | TGTGGACTCAAGGTGTTTCA+AGG | - | chr1_2:25807343-25807362 | Msa0064560:intron | 45.0% |
| GTGGGTCTCTTTAATCTTGG+AGG | - | chr1_2:25807550-25807569 | Msa0064560:intron | 45.0% | |
| !!! | GTAAAAATTTTAATAAATTT+GGG | + | chr1_2:25803658-25803677 | None:intergenic | 5.0% |
| !!! | TGTAAAAATTTTAATAAATT+TGG | + | chr1_2:25803659-25803678 | None:intergenic | 5.0% |
| ! | TTGGGTCACGAGGTGTTTCT+GGG | + | chr1_2:25802258-25802277 | None:intergenic | 50.0% |
| ! | ATTGGGTCACGAGGTGTTTC+TGG | + | chr1_2:25802259-25802278 | None:intergenic | 50.0% |
| AGAAACACCTCGTGACCCAA+TGG | - | chr1_2:25802258-25802277 | Msa0064560:three_prime_UTR | 50.0% | |
| TTCATGGTCTGCTTCTGCCA+TGG | - | chr1_2:25802294-25802313 | Msa0064560:three_prime_UTR | 50.0% | |
| GTGTTTGTCAGTTTCGTCGC+GGG | + | chr1_2:25802565-25802584 | None:intergenic | 50.0% | |
| GGAAGACTATCACACAGCAG+TGG | - | chr1_2:25802948-25802967 | Msa0064560:CDS | 50.0% | |
| TGTGGGTGAAAAAGGGGTGA+TGG | + | chr1_2:25803746-25803765 | None:intergenic | 50.0% | |
| CATTACAGAGTCTCTGCCAC+CGG | - | chr1_2:25805143-25805162 | Msa0064560:intron | 50.0% | |
| ! | TCAGCTCCATGCTGCTGTTT+CGG | - | chr1_2:25805253-25805272 | Msa0064560:intron | 50.0% |
| TGCTCGTAAAGACGAGCAGA+TGG | - | chr1_2:25805334-25805353 | Msa0064560:intron | 50.0% | |
| GGTAGCTGCTCAATGTGTTG+AGG | - | chr1_2:25805394-25805413 | Msa0064560:intron | 50.0% | |
| TCAATGTGTTGAGGCTGCTG+AGG | - | chr1_2:25805403-25805422 | Msa0064560:intron | 50.0% | |
| !! | TTAGCTCTGCCGTGAATGTG+AGG | - | chr1_2:25805462-25805481 | Msa0064560:intron | 50.0% |
| GGCTGCAACATTGAAGGCAA+GGG | - | chr1_2:25805791-25805810 | Msa0064560:intron | 50.0% | |
| !! | GGTAATGGTAATGGTGGTGG+GGG | - | chr1_2:25805876-25805895 | Msa0064560:intron | 50.0% |
| CTTCTTAAACGCACTCGCAC+AGG | - | chr1_2:25806005-25806024 | Msa0064560:intron | 50.0% | |
| GCCAATGATCGAACCCTTGA+TGG | + | chr1_2:25807080-25807099 | None:intergenic | 50.0% | |
| TCAAGGGTTCGATCATTGGC+TGG | - | chr1_2:25807080-25807099 | Msa0064560:intron | 50.0% | |
| GGTGACAACCGTCGTTACTT+TGG | - | chr1_2:25807258-25807277 | Msa0064560:intron | 50.0% | |
| !! | TCACGAGGTGTTTCTGGGTC+GGG | + | chr1_2:25802253-25802272 | None:intergenic | 55.0% |
| !! | GTCACGAGGTGTTTCTGGGT+CGG | + | chr1_2:25802254-25802273 | None:intergenic | 55.0% |
| GAAAGAGGAGGGAGTTGAGC+TGG | + | chr1_2:25802340-25802359 | None:intergenic | 55.0% | |
| ! | TATGCTGGACTGACTCAGGC+TGG | - | chr1_2:25802605-25802624 | Msa0064560:three_prime_UTR | 55.0% |
| CACAGCAGTGGACCTCTGAA+TGG | - | chr1_2:25802960-25802979 | Msa0064560:CDS | 55.0% | |
| CGGTGGCAGAGACTCTGTAA+TGG | + | chr1_2:25805145-25805164 | None:intergenic | 55.0% | |
| CAGCAACCGAAACAGCAGCA+TGG | + | chr1_2:25805262-25805281 | None:intergenic | 55.0% | |
| !! | CATGCTGCTGTTTCGGTTGC+TGG | - | chr1_2:25805260-25805279 | Msa0064560:intron | 55.0% |
| ACCTGACGAAGCAGCAGTTG+CGG | + | chr1_2:25805315-25805334 | None:intergenic | 55.0% | |
| GCAGATGGCGAAGACAGACA+TGG | - | chr1_2:25805349-25805368 | Msa0064560:intron | 55.0% | |
| GATGGCGAAGACAGACATGG+CGG | - | chr1_2:25805352-25805371 | Msa0064560:intron | 55.0% | |
| GACAGACATGGCGGTAGCAT+CGG | - | chr1_2:25805361-25805380 | Msa0064560:intron | 55.0% | |
| TGTTGAGGCTGCTGAGGCTA+TGG | - | chr1_2:25805409-25805428 | Msa0064560:intron | 55.0% | |
| GTTGAGGCTGCTGAGGCTAT+GGG | - | chr1_2:25805410-25805429 | Msa0064560:intron | 55.0% | |
| TTGAGGCTGCTGAGGCTATG+GGG | - | chr1_2:25805411-25805430 | Msa0064560:intron | 55.0% | |
| TGAGCGTGATCACCTCGCTT+CGG | - | chr1_2:25805436-25805455 | Msa0064560:intron | 55.0% | |
| GGGCTGCAACATTGAAGGCA+AGG | - | chr1_2:25805790-25805809 | Msa0064560:intron | 55.0% | |
| !! | AAAGAAATGCCGGCTTGGCC+TGG | - | chr1_2:25807216-25807235 | Msa0064560:CDS | 55.0% |
| CCTTCTAGCAAGTGACGTCC+AGG | + | chr1_2:25807237-25807256 | None:intergenic | 55.0% | |
| ! | CCTGGACGTCACTTGCTAGA+AGG | - | chr1_2:25807234-25807253 | Msa0064560:CDS | 55.0% |
| ! | GGACGTCACTTGCTAGAAGG+TGG | - | chr1_2:25807237-25807256 | Msa0064560:CDS | 55.0% |
| ! | CTGGACTGACTCAGGCTGGT+CGG | - | chr1_2:25802609-25802628 | Msa0064560:three_prime_UTR | 60.0% |
| TACAGAGTCTCTGCCACCGG+CGG | - | chr1_2:25805146-25805165 | Msa0064560:intron | 60.0% | |
| GAGGTGGCTGAAGGAGAGGA+AGG | - | chr1_2:25805196-25805215 | Msa0064560:intron | 60.0% | |
| TGGAGTTGCAGCCGCTGTTG+CGG | - | chr1_2:25805280-25805299 | Msa0064560:intron | 60.0% | |
| GGCTGCAATAGCCGCAACAG+CGG | + | chr1_2:25805294-25805313 | None:intergenic | 60.0% | |
| !! | GGTAGCATCGGCTGCCACAT+TGG | - | chr1_2:25805373-25805392 | Msa0064560:intron | 60.0% |
| TGAGGCTGCTGAGGCTATGG+GGG | - | chr1_2:25805412-25805431 | Msa0064560:intron | 60.0% | |
| CAGAGCTAACCACCGAAGCG+AGG | + | chr1_2:25805451-25805470 | None:intergenic | 60.0% | |
| GCCGTGAATGTGAGGTCTGC+CGG | - | chr1_2:25805470-25805489 | Msa0064560:intron | 60.0% | |
| GCCGGCAGACCTCACATTCA+CGG | + | chr1_2:25805474-25805493 | None:intergenic | 60.0% | |
| GCGTGGGGCTGCAACATTGA+AGG | - | chr1_2:25805785-25805804 | Msa0064560:intron | 60.0% | |
| GGTGGGGGCAGTGGTAGTAA+TGG | - | chr1_2:25805891-25805910 | Msa0064560:intron | 60.0% | |
| AAGTGACGTCCAGGCCAAGC+CGG | + | chr1_2:25807228-25807247 | None:intergenic | 60.0% | |
| TGGGGAGGTGGCTGAAGGAG+AGG | - | chr1_2:25805192-25805211 | Msa0064560:intron | 65.0% | |
| ! | GCCGCAACTGCTGCTTCGTC+AGG | - | chr1_2:25805311-25805330 | Msa0064560:intron | 65.0% |
| GCGTGATCACCTCGCTTCGG+TGG | - | chr1_2:25805439-25805458 | Msa0064560:intron | 65.0% | |
| TTGACGGCTGCTGCTGCGAC+AGG | - | chr1_2:25805506-25805525 | Msa0064560:intron | 65.0% | |
| !! | GGTAATGGTGGTGGGGGCAG+TGG | - | chr1_2:25805882-25805901 | Msa0064560:intron | 65.0% |
| AGAGTCTCTGCCACCGGCGG+TGG | - | chr1_2:25805149-25805168 | Msa0064560:intron | 70.0% | |
| TGGCGGAGGCGGAGGGAAGA+CGG | - | chr1_2:25805169-25805188 | Msa0064560:intron | 70.0% | |
| GGAGGCGGAGGGAAGACGGT+GGG | - | chr1_2:25805173-25805192 | Msa0064560:intron | 70.0% | |
| GAGGCGGAGGGAAGACGGTG+GGG | - | chr1_2:25805174-25805193 | Msa0064560:intron | 70.0% | |
| GAGGGAAGACGGTGGGGAGG+TGG | - | chr1_2:25805180-25805199 | Msa0064560:intron | 70.0% | |
| GACGGTGGGGAGGTGGCTGA+AGG | - | chr1_2:25805187-25805206 | Msa0064560:intron | 70.0% | |
| GTCTCTGCCACCGGCGGTGG+CGG | - | chr1_2:25805152-25805171 | Msa0064560:intron | 75.0% | |
| CGGAGGCGGAGGGAAGACGG+TGG | - | chr1_2:25805172-25805191 | Msa0064560:intron | 75.0% | |
| GCGGAGGGAAGACGGTGGGG+AGG | - | chr1_2:25805177-25805196 | Msa0064560:intron | 75.0% | |
| !! | TCTGCCACCGGCGGTGGCGG+AGG | - | chr1_2:25805155-25805174 | Msa0064560:intron | 80.0% |
| !!! | GCCACCGGCGGTGGCGGAGG+CGG | - | chr1_2:25805158-25805177 | Msa0064560:intron | 85.0% |
| ! | TCCGCCTCCGCCACCGCCGG+TGG | + | chr1_2:25805162-25805181 | None:intergenic | 85.0% |
| !!! | ACCGGCGGTGGCGGAGGCGG+AGG | - | chr1_2:25805161-25805180 | Msa0064560:intron | 85.0% |
| ! | CCCTCCGCCTCCGCCACCGC+CGG | + | chr1_2:25805165-25805184 | None:intergenic | 85.0% |
| !!! | CCGGCGGTGGCGGAGGCGGA+GGG | - | chr1_2:25805162-25805181 | Msa0064560:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 25802174 | 25808014 | 25802174 | ID=Msa0064560;Name=Msa0064560 |
| chr1_2 | mRNA | 25802174 | 25808014 | 25802174 | ID=Msa0064560-mRNA-1;Parent=Msa0064560;Name=Msa0064560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=46|1|1|1|1|1|7|601|472 |
| chr1_2 | exon | 25802174 | 25802992 | 25802174 | ID=Msa0064560-mRNA-1:exon:9207;Parent=Msa0064560-mRNA-1 |
| chr1_2 | exon | 25803291 | 25803348 | 25803291 | ID=Msa0064560-mRNA-1:exon:9206;Parent=Msa0064560-mRNA-1 |
| chr1_2 | exon | 25803600 | 25803649 | 25803600 | ID=Msa0064560-mRNA-1:exon:9205;Parent=Msa0064560-mRNA-1 |
| chr1_2 | exon | 25804162 | 25804407 | 25804162 | ID=Msa0064560-mRNA-1:exon:9204;Parent=Msa0064560-mRNA-1 |
| chr1_2 | exon | 25804661 | 25805102 | 25804661 | ID=Msa0064560-mRNA-1:exon:9203;Parent=Msa0064560-mRNA-1 |
| chr1_2 | exon | 25807154 | 25807264 | 25807154 | ID=Msa0064560-mRNA-1:exon:9202;Parent=Msa0064560-mRNA-1 |
| chr1_2 | exon | 25807675 | 25808014 | 25807675 | ID=Msa0064560-mRNA-1:exon:9201;Parent=Msa0064560-mRNA-1 |
| chr1_2 | five_prime_UTR | 25807969 | 25808014 | 25807969 | ID=Msa0064560-mRNA-1:five_prime_utr;Parent=Msa0064560-mRNA-1 |
| chr1_2 | CDS | 25807675 | 25807968 | 25807675 | ID=Msa0064560-mRNA-1:cds;Parent=Msa0064560-mRNA-1 |
| chr1_2 | CDS | 25807154 | 25807264 | 25807154 | ID=Msa0064560-mRNA-1:cds;Parent=Msa0064560-mRNA-1 |
| chr1_2 | CDS | 25804661 | 25805102 | 25804661 | ID=Msa0064560-mRNA-1:cds;Parent=Msa0064560-mRNA-1 |
| chr1_2 | CDS | 25804162 | 25804407 | 25804162 | ID=Msa0064560-mRNA-1:cds;Parent=Msa0064560-mRNA-1 |
| chr1_2 | CDS | 25803600 | 25803649 | 25803600 | ID=Msa0064560-mRNA-1:cds;Parent=Msa0064560-mRNA-1 |
| chr1_2 | CDS | 25803291 | 25803348 | 25803291 | ID=Msa0064560-mRNA-1:cds;Parent=Msa0064560-mRNA-1 |
| chr1_2 | CDS | 25802775 | 25802992 | 25802775 | ID=Msa0064560-mRNA-1:cds;Parent=Msa0064560-mRNA-1 |
| chr1_2 | three_prime_UTR | 25802174 | 25802774 | 25802174 | ID=Msa0064560-mRNA-1:three_prime_utr;Parent=Msa0064560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
