Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116730 | XP_013468250.1 | 96.350 | 274 | 10 | 0 | 1 | 274 | 1 | 274 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116730 | sp|Q9Y7P0|RISA_SCHPO | 50.746 | 201 | 95 | 2 | 57 | 257 | 1 | 197 | 1.88e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116730 | A0A072VKG0 | 96.350 | 274 | 10 | 0 | 1 | 274 | 1 | 274 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072720 | Msa0116730 | -0.817705 | 2.870960e-52 | -8.615850e-47 |
| Msa0116640 | Msa0116730 | 0.991342 | 3.807407e-187 | -8.615850e-47 |
| Msa0116730 | Msa0167980 | -0.808235 | 3.421523e-50 | -8.615850e-47 |
| Msa0116730 | Msa0204960 | -0.806050 | 9.929382e-50 | -8.615850e-47 |
| Msa0116730 | Msa0240900 | -0.815398 | 9.437765e-52 | -8.615850e-47 |
| Msa0116730 | Msa0257490 | -0.801775 | 7.678129e-49 | -8.615850e-47 |
| Msa0116730 | Msa0259210 | -0.804971 | 1.672046e-49 | -8.615850e-47 |
| Msa0116730 | Msa0278570 | -0.810396 | 1.176718e-50 | -8.615850e-47 |
| Msa0116730 | Msa0281530 | -0.829812 | 4.174505e-55 | -8.615850e-47 |
| Msa0116730 | Msa0317970 | -0.819316 | 1.238328e-52 | -8.615850e-47 |
| Msa0116730 | Msa0320590 | -0.804409 | 2.190589e-49 | -8.615850e-47 |
| Msa0116730 | Msa0360210 | -0.801219 | 9.984916e-49 | -8.615850e-47 |
| Msa0116730 | Msa0406770 | -0.802017 | 6.848306e-49 | -8.615850e-47 |
| Msa0116730 | Msa0450400 | 0.815352 | 9.659458e-52 | -8.615850e-47 |
| Msa0116730 | Msa0452710 | -0.803486 | 3.407563e-49 | -8.615850e-47 |
| Msa0116730 | Msa0592270 | -0.806143 | 9.491386e-50 | -8.615850e-47 |
| Msa0116730 | Msa0822500 | -0.802866 | 4.577907e-49 | -8.615850e-47 |
| Msa0116730 | Msa1071050 | -0.809327 | 1.999161e-50 | -8.615850e-47 |
| Msa0116730 | Msa1089450 | -0.808000 | 3.840391e-50 | -8.615850e-47 |
| Msa0116730 | Msa1218450 | -0.804956 | 1.684069e-49 | -8.615850e-47 |
| Msa0116730 | Msa1440310 | -0.807172 | 5.754969e-50 | -8.615850e-47 |
| Msa0116730 | Msa1449340 | 0.801619 | 8.266067e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116730 | MtrunA17_Chr1g0181701 | 96.350 | 274 | 10 | 0 | 1 | 274 | 1 | 274 | 0.0 | 540 |
| Msa0116730 | MtrunA17_Chr4g0021091 | 77.821 | 257 | 52 | 3 | 1 | 257 | 6 | 257 | 2.47e-143 | 402 |
| Msa0116730 | MtrunA17_Chr4g0031201 | 71.212 | 66 | 19 | 0 | 65 | 130 | 1 | 66 | 4.37e-25 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116730 | AT2G20690.1 | 72.464 | 207 | 54 | 2 | 52 | 258 | 59 | 262 | 8.93e-106 | 308 |
Find 86 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTTGTGGGTGAAGATT+AGG | 0.274378 | 1_3:+35857766 | Msa0116730:CDS |
| TTCGAGATTCACCGGTGAAC+CGG | 0.292035 | 1_3:-35857649 | None:intergenic |
| CCATTGCGTCGGATTCTTCA+TGG | 0.293548 | 1_3:+35858027 | Msa0116730:CDS |
| TTCTTTGTGGGTGAAGATTA+GGG | 0.311609 | 1_3:+35857767 | Msa0116730:CDS |
| AATCTTGAAGTTGATGTTCT+TGG | 0.314366 | 1_3:+35857963 | Msa0116730:CDS |
| GGGAGGGTTTGAATCGGAAA+TGG | 0.354448 | 1_3:-35857314 | None:intergenic |
| AAGGCATTGGATTGGGATAT+AGG | 0.356309 | 1_3:-35857391 | None:intergenic |
| GGAGGGTTTGAATCGGAAAT+GGG | 0.364764 | 1_3:-35857313 | None:intergenic |
| GGGTGTGAGAAGTGATTGTT+GGG | 0.369828 | 1_3:-35857290 | None:intergenic |
| GCGGAGAGTGATGGGTTTGC+GGG | 0.377969 | 1_3:-35857361 | None:intergenic |
| TTCTTCATGGTCTTCATCTC+AGG | 0.382525 | 1_3:+35858040 | Msa0116730:CDS |
| GAAGATTAGGGTTGAGAAGA+AGG | 0.393584 | 1_3:+35857779 | Msa0116730:CDS |
| GAGGGTTTGAATCGGAAATG+GGG | 0.405442 | 1_3:-35857312 | None:intergenic |
| AGGGTTTGAATCGGAAATGG+GGG | 0.410939 | 1_3:-35857311 | None:intergenic |
| TGCTACACCGACGGTGAAAT+CGG | 0.412121 | 1_3:-35857586 | None:intergenic |
| ACTGGCCTCGTTGAAGAAAT+CGG | 0.413747 | 1_3:+35857417 | Msa0116730:CDS |
| GGGGTGTGAGAAGTGATTGT+TGG | 0.420093 | 1_3:-35857291 | None:intergenic |
| TGAAGTATATTGTGCCTAAA+GGG | 0.429743 | 1_3:+35857808 | Msa0116730:CDS |
| TGGGTTTGCGGGTGGATTGA+AGG | 0.433810 | 1_3:-35857350 | None:intergenic |
| CAAGGTCACGTGGATGGCAC+GGG | 0.434702 | 1_3:+35857714 | Msa0116730:CDS |
| GTTGAAGAAGGTTGGTCAAA+AGG | 0.440224 | 1_3:+35857938 | Msa0116730:CDS |
| CAGTGAAAAGGCATTGGATT+GGG | 0.443221 | 1_3:-35857398 | None:intergenic |
| GTCCTCGACGGCGTCAGCCT+TGG | 0.444801 | 1_3:+35857504 | Msa0116730:CDS |
| TTGAAGTATATTGTGCCTAA+AGG | 0.450060 | 1_3:+35857807 | Msa0116730:CDS |
| AGGAAGATGCGAAGAGGGGA+GGG | 0.459067 | 1_3:-35857330 | None:intergenic |
| ATTGAAGGAAGATGCGAAGA+GGG | 0.466776 | 1_3:-35857335 | None:intergenic |
| TCAAGGTCACGTGGATGGCA+CGG | 0.471835 | 1_3:+35857713 | Msa0116730:CDS |
| CTTCAACGAGGCCAGTGAAA+AGG | 0.473804 | 1_3:-35857410 | None:intergenic |
| TCGAGATTCACCGGTGAACC+GGG | 0.474305 | 1_3:-35857648 | None:intergenic |
| TGCGGAGAGTGATGGGTTTG+CGG | 0.478744 | 1_3:-35857362 | None:intergenic |
| CGGTGAAATCGGAAGCGGTT+TGG | 0.487072 | 1_3:-35857575 | None:intergenic |
| GTTAACTCCGGTGAGTAGAA+TGG | 0.487110 | 1_3:+35857677 | Msa0116730:CDS |
| GATTGTTGTTCCGTTGAAGA+AGG | 0.488346 | 1_3:+35857926 | Msa0116730:CDS |
| GCCTAAAGGGTTTATTGCTG+TGG | 0.489656 | 1_3:+35857821 | Msa0116730:CDS |
| TGTAAGTCGAAACCGCCGTT+AGG | 0.491421 | 1_3:-35857465 | None:intergenic |
| GGTGAGGCATGTGCCGTTGA+CGG | 0.493251 | 1_3:-35857538 | None:intergenic |
| ACCCACAAAGAATCTCCTTC+AGG | 0.494962 | 1_3:-35857756 | None:intergenic |
| TCTCTCCTCGAACTCGAACC+CGG | 0.497578 | 1_3:+35857630 | Msa0116730:CDS |
| AAGGAAGATGCGAAGAGGGG+AGG | 0.502303 | 1_3:-35857331 | None:intergenic |
| AAAGGGTTTATTGCTGTGGA+TGG | 0.510430 | 1_3:+35857825 | Msa0116730:CDS |
| TTCCTGAAGGAGATTCTTTG+TGG | 0.511063 | 1_3:+35857754 | Msa0116730:CDS |
| GGGTTTGAATCGGAAATGGG+GGG | 0.513055 | 1_3:-35857310 | None:intergenic |
| GTGAACCGGGTTCGAGTTCG+AGG | 0.513466 | 1_3:-35857635 | None:intergenic |
| GCGTTAGTGCGGAGAGTGAT+GGG | 0.513733 | 1_3:-35857369 | None:intergenic |
| CGAGGCCAGTGAAAAGGCAT+TGG | 0.515599 | 1_3:-35857404 | None:intergenic |
| GTTGAGAGGCTTCTTAGTAG+TGG | 0.517944 | 1_3:+35857993 | Msa0116730:CDS |
| TTAACTCCGGTGAGTAGAAT+GGG | 0.518507 | 1_3:+35857678 | Msa0116730:CDS |
| AACGCTCTTTCGAGATTCAC+CGG | 0.519943 | 1_3:-35857657 | None:intergenic |
| GTTGTTCCGTTGAAGAAGGT+TGG | 0.522636 | 1_3:+35857930 | Msa0116730:CDS |
| CGAACTCGAACCCGGTTCAC+CGG | 0.526596 | 1_3:+35857638 | Msa0116730:CDS |
| GGCGTTAGTGCGGAGAGTGA+TGG | 0.530544 | 1_3:-35857370 | None:intergenic |
| GGTTTGGTCGAATTCTGTTA+CGG | 0.531348 | 1_3:-35857559 | None:intergenic |
| CCAGTGAAAAGGCATTGGAT+TGG | 0.536141 | 1_3:-35857399 | None:intergenic |
| AAGGCTGACGCCGTCGAGGA+CGG | 0.544414 | 1_3:-35857502 | None:intergenic |
| TCCTGAAGGAGATTCTTTGT+GGG | 0.545465 | 1_3:+35857755 | Msa0116730:CDS |
| ACCGCTTCCGATTTCACCGT+CGG | 0.547391 | 1_3:+35857579 | Msa0116730:CDS |
| GGCGACAGCATCGCCGTCAA+CGG | 0.553466 | 1_3:+35857525 | Msa0116730:CDS |
| GAGAGTGATGGGTTTGCGGG+TGG | 0.555610 | 1_3:-35857358 | None:intergenic |
| TTGAAGGAAGATGCGAAGAG+GGG | 0.557197 | 1_3:-35857334 | None:intergenic |
| TTTGTTCAAGGTCACGTGGA+TGG | 0.569387 | 1_3:+35857708 | Msa0116730:CDS |
| TCCACAGCAATAAACCCTTT+AGG | 0.573093 | 1_3:-35857822 | None:intergenic |
| AAGGTCACGTGGATGGCACG+GGG | 0.573506 | 1_3:+35857715 | Msa0116730:CDS |
| TTTCACCGTCGGTGTAGCAC+CGG | 0.574525 | 1_3:+35857590 | Msa0116730:CDS |
| TGAAGAATCCGACGCAATGG+AGG | 0.588079 | 1_3:-35858024 | None:intergenic |
| ATTGTTTCGATGATTCCTGA+AGG | 0.590711 | 1_3:+35857741 | Msa0116730:CDS |
| GAAGAGGGGAGGGTTTGAAT+CGG | 0.593742 | 1_3:-35857320 | None:intergenic |
| TGACGGCGATGCTGTCGCCA+AGG | 0.594031 | 1_3:-35857521 | None:intergenic |
| CCATGAAGAATCCGACGCAA+TGG | 0.597904 | 1_3:-35858027 | None:intergenic |
| CGCCAAGGCTGACGCCGTCG+AGG | 0.600871 | 1_3:-35857506 | None:intergenic |
| GAAGAATCCGACGCAATGGA+GGG | 0.605645 | 1_3:-35858023 | None:intergenic |
| TCTCGAAAGAGCGTTAACTC+CGG | 0.607673 | 1_3:+35857665 | Msa0116730:CDS |
| TTCTTGGTAAGCATGTTGAG+AGG | 0.623953 | 1_3:+35857979 | Msa0116730:CDS |
| ACCGACGGTGAAATCGGAAG+CGG | 0.625549 | 1_3:-35857580 | None:intergenic |
| TGTCCACCCATTCTACTCAC+CGG | 0.626670 | 1_3:-35857684 | None:intergenic |
| GGTCGAATTCTGTTACGGTG+AGG | 0.631616 | 1_3:-35857554 | None:intergenic |
| GATTGAAGGAAGATGCGAAG+AGG | 0.634655 | 1_3:-35857336 | None:intergenic |
| AACGCTAAAACCGTCCTCGA+CGG | 0.653931 | 1_3:+35857492 | Msa0116730:CDS |
| AAACTCGGCGAATCTCCTAA+CGG | 0.657767 | 1_3:+35857450 | Msa0116730:CDS |
| GGATGGAACTAGTTTGACTG+TGG | 0.662256 | 1_3:+35857842 | Msa0116730:CDS |
| CGGTGCCGATTTCTTCAACG+AGG | 0.662620 | 1_3:-35857422 | None:intergenic |
| TTGGGATATAGGCGTTAGTG+CGG | 0.668315 | 1_3:-35857380 | None:intergenic |
| AGTTTCCGGTGCTACACCGA+CGG | 0.673432 | 1_3:-35857595 | None:intergenic |
| AGGTCACGTGGATGGCACGG+GGG | 0.687554 | 1_3:+35857716 | Msa0116730:CDS |
| GGTGTGAGAAGTGATTGTTG+GGG | 0.689928 | 1_3:-35857289 | None:intergenic |
| ACTCCGGTGAGTAGAATGGG+TGG | 0.693744 | 1_3:+35857681 | Msa0116730:CDS |
| CTCGGCGAATCTCCTAACGG+CGG | 0.750828 | 1_3:+35857453 | Msa0116730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGGTTGTTTTAATTTTATGT+TGG | + | chr1_3:35857884-35857903 | Msa0116730:CDS | 20.0% |
| !!! | AGGTTGTTTTAATTTTATGT+TGG | + | chr1_3:35857884-35857903 | Msa0116730:CDS | 20.0% |
| TTGAAGTATATTGTGCCTAA+AGG | + | chr1_3:35857807-35857826 | Msa0116730:CDS | 30.0% | |
| TGAAGTATATTGTGCCTAAA+GGG | + | chr1_3:35857808-35857827 | Msa0116730:CDS | 30.0% | |
| !!! | GTTGATGTTTTTGATGATGA+AGG | + | chr1_3:35857864-35857883 | Msa0116730:CDS | 30.0% |
| !! | AATCTTGAAGTTGATGTTCT+TGG | + | chr1_3:35857963-35857982 | Msa0116730:CDS | 30.0% |
| TTGAAGTATATTGTGCCTAA+AGG | + | chr1_3:35857807-35857826 | Msa0116730:CDS | 30.0% | |
| TGAAGTATATTGTGCCTAAA+GGG | + | chr1_3:35857808-35857827 | Msa0116730:CDS | 30.0% | |
| !!! | GTTGATGTTTTTGATGATGA+AGG | + | chr1_3:35857864-35857883 | Msa0116730:CDS | 30.0% |
| !! | AATCTTGAAGTTGATGTTCT+TGG | + | chr1_3:35857963-35857982 | Msa0116730:CDS | 30.0% |
| ! | GGTTTTTGATGTTAAGGTGA+TGG | - | chr1_3:35857271-35857290 | None:intergenic | 35.0% |
| ! | TGTTGGGGTTTTTGATGTTA+AGG | - | chr1_3:35857277-35857296 | None:intergenic | 35.0% |
| ! | GATGTTTTTCTCAGAGTTTC+CGG | - | chr1_3:35857612-35857631 | None:intergenic | 35.0% |
| ATTGTTTCGATGATTCCTGA+AGG | + | chr1_3:35857741-35857760 | Msa0116730:CDS | 35.0% | |
| ATTCTTTGTGGGTGAAGATT+AGG | + | chr1_3:35857766-35857785 | Msa0116730:CDS | 35.0% | |
| TTCTTTGTGGGTGAAGATTA+GGG | + | chr1_3:35857767-35857786 | Msa0116730:CDS | 35.0% | |
| ! | TTTTGACCAACCTTCTTCAA+CGG | - | chr1_3:35857939-35857958 | None:intergenic | 35.0% |
| ! | GGTTTTTGATGTTAAGGTGA+TGG | - | chr1_3:35857271-35857290 | None:intergenic | 35.0% |
| ! | TGTTGGGGTTTTTGATGTTA+AGG | - | chr1_3:35857277-35857296 | None:intergenic | 35.0% |
| ! | GATGTTTTTCTCAGAGTTTC+CGG | - | chr1_3:35857612-35857631 | None:intergenic | 35.0% |
| ATTGTTTCGATGATTCCTGA+AGG | + | chr1_3:35857741-35857760 | Msa0116730:CDS | 35.0% | |
| ATTCTTTGTGGGTGAAGATT+AGG | + | chr1_3:35857766-35857785 | Msa0116730:CDS | 35.0% | |
| TTCTTTGTGGGTGAAGATTA+GGG | + | chr1_3:35857767-35857786 | Msa0116730:CDS | 35.0% | |
| ! | TTTTGACCAACCTTCTTCAA+CGG | - | chr1_3:35857939-35857958 | None:intergenic | 35.0% |
| ATTGAAGGAAGATGCGAAGA+GGG | - | chr1_3:35857338-35857357 | None:intergenic | 40.0% | |
| !! | AAGGCATTGGATTGGGATAT+AGG | - | chr1_3:35857394-35857413 | None:intergenic | 40.0% |
| !! | CAGTGAAAAGGCATTGGATT+GGG | - | chr1_3:35857401-35857420 | None:intergenic | 40.0% |
| !!! | AGATTCGCCGAGTTTTTTGA+CGG | - | chr1_3:35857445-35857464 | None:intergenic | 40.0% |
| ! | GGTTTGGTCGAATTCTGTTA+CGG | - | chr1_3:35857562-35857581 | None:intergenic | 40.0% |
| TTAACTCCGGTGAGTAGAAT+GGG | + | chr1_3:35857678-35857697 | Msa0116730:CDS | 40.0% | |
| ! | ATGGGTGGACATTTTGTTCA+AGG | + | chr1_3:35857696-35857715 | Msa0116730:CDS | 40.0% |
| ! | ACATTTTGTTCAAGGTCACG+TGG | + | chr1_3:35857704-35857723 | Msa0116730:CDS | 40.0% |
| TTCCTGAAGGAGATTCTTTG+TGG | + | chr1_3:35857754-35857773 | Msa0116730:CDS | 40.0% | |
| TCCTGAAGGAGATTCTTTGT+GGG | + | chr1_3:35857755-35857774 | Msa0116730:CDS | 40.0% | |
| GAAGATTAGGGTTGAGAAGA+AGG | + | chr1_3:35857779-35857798 | Msa0116730:CDS | 40.0% | |
| TCCACAGCAATAAACCCTTT+AGG | - | chr1_3:35857825-35857844 | None:intergenic | 40.0% | |
| AAAGGGTTTATTGCTGTGGA+TGG | + | chr1_3:35857825-35857844 | Msa0116730:CDS | 40.0% | |
| ! | GATTGTTGTTCCGTTGAAGA+AGG | + | chr1_3:35857926-35857945 | Msa0116730:CDS | 40.0% |
| ! | GTTGAAGAAGGTTGGTCAAA+AGG | + | chr1_3:35857938-35857957 | Msa0116730:CDS | 40.0% |
| TTCTTGGTAAGCATGTTGAG+AGG | + | chr1_3:35857979-35857998 | Msa0116730:CDS | 40.0% | |
| TTCTTCATGGTCTTCATCTC+AGG | + | chr1_3:35858040-35858059 | Msa0116730:CDS | 40.0% | |
| ATTGAAGGAAGATGCGAAGA+GGG | - | chr1_3:35857338-35857357 | None:intergenic | 40.0% | |
| !! | AAGGCATTGGATTGGGATAT+AGG | - | chr1_3:35857394-35857413 | None:intergenic | 40.0% |
| !! | CAGTGAAAAGGCATTGGATT+GGG | - | chr1_3:35857401-35857420 | None:intergenic | 40.0% |
| !!! | AGATTCGCCGAGTTTTTTGA+CGG | - | chr1_3:35857445-35857464 | None:intergenic | 40.0% |
| ! | GGTTTGGTCGAATTCTGTTA+CGG | - | chr1_3:35857562-35857581 | None:intergenic | 40.0% |
| TTAACTCCGGTGAGTAGAAT+GGG | + | chr1_3:35857678-35857697 | Msa0116730:CDS | 40.0% | |
| ! | ATGGGTGGACATTTTGTTCA+AGG | + | chr1_3:35857696-35857715 | Msa0116730:CDS | 40.0% |
| ! | ACATTTTGTTCAAGGTCACG+TGG | + | chr1_3:35857704-35857723 | Msa0116730:CDS | 40.0% |
| TTCCTGAAGGAGATTCTTTG+TGG | + | chr1_3:35857754-35857773 | Msa0116730:CDS | 40.0% | |
| TCCTGAAGGAGATTCTTTGT+GGG | + | chr1_3:35857755-35857774 | Msa0116730:CDS | 40.0% | |
| GAAGATTAGGGTTGAGAAGA+AGG | + | chr1_3:35857779-35857798 | Msa0116730:CDS | 40.0% | |
| TCCACAGCAATAAACCCTTT+AGG | - | chr1_3:35857825-35857844 | None:intergenic | 40.0% | |
| AAAGGGTTTATTGCTGTGGA+TGG | + | chr1_3:35857825-35857844 | Msa0116730:CDS | 40.0% | |
| ! | GATTGTTGTTCCGTTGAAGA+AGG | + | chr1_3:35857926-35857945 | Msa0116730:CDS | 40.0% |
| ! | GTTGAAGAAGGTTGGTCAAA+AGG | + | chr1_3:35857938-35857957 | Msa0116730:CDS | 40.0% |
| TTCTTGGTAAGCATGTTGAG+AGG | + | chr1_3:35857979-35857998 | Msa0116730:CDS | 40.0% | |
| TTCTTCATGGTCTTCATCTC+AGG | + | chr1_3:35858040-35858059 | Msa0116730:CDS | 40.0% | |
| GGTGTGAGAAGTGATTGTTG+GGG | - | chr1_3:35857292-35857311 | None:intergenic | 45.0% | |
| GGGTGTGAGAAGTGATTGTT+GGG | - | chr1_3:35857293-35857312 | None:intergenic | 45.0% | |
| AGGGTTTGAATCGGAAATGG+GGG | - | chr1_3:35857314-35857333 | None:intergenic | 45.0% | |
| GAGGGTTTGAATCGGAAATG+GGG | - | chr1_3:35857315-35857334 | None:intergenic | 45.0% | |
| GGAGGGTTTGAATCGGAAAT+GGG | - | chr1_3:35857316-35857335 | None:intergenic | 45.0% | |
| TTGAAGGAAGATGCGAAGAG+GGG | - | chr1_3:35857337-35857356 | None:intergenic | 45.0% | |
| GATTGAAGGAAGATGCGAAG+AGG | - | chr1_3:35857339-35857358 | None:intergenic | 45.0% | |
| TTGGGATATAGGCGTTAGTG+CGG | - | chr1_3:35857383-35857402 | None:intergenic | 45.0% | |
| !! | CCAGTGAAAAGGCATTGGAT+TGG | - | chr1_3:35857402-35857421 | None:intergenic | 45.0% |
| ! | CCAATCCAATGCCTTTTCAC+TGG | + | chr1_3:35857399-35857418 | Msa0116730:CDS | 45.0% |
| ! | ACTGGCCTCGTTGAAGAAAT+CGG | + | chr1_3:35857417-35857436 | Msa0116730:CDS | 45.0% |
| ATCGGCACCGTCAAAAAACT+CGG | + | chr1_3:35857435-35857454 | Msa0116730:CDS | 45.0% | |
| AAACTCGGCGAATCTCCTAA+CGG | + | chr1_3:35857450-35857469 | Msa0116730:CDS | 45.0% | |
| AACGCTCTTTCGAGATTCAC+CGG | - | chr1_3:35857660-35857679 | None:intergenic | 45.0% | |
| !! | TCTCGAAAGAGCGTTAACTC+CGG | + | chr1_3:35857665-35857684 | Msa0116730:CDS | 45.0% |
| GTTAACTCCGGTGAGTAGAA+TGG | + | chr1_3:35857677-35857696 | Msa0116730:CDS | 45.0% | |
| TTTGTTCAAGGTCACGTGGA+TGG | + | chr1_3:35857708-35857727 | Msa0116730:CDS | 45.0% | |
| ACCCACAAAGAATCTCCTTC+AGG | - | chr1_3:35857759-35857778 | None:intergenic | 45.0% | |
| GCCTAAAGGGTTTATTGCTG+TGG | + | chr1_3:35857821-35857840 | Msa0116730:CDS | 45.0% | |
| ! | GGATGGAACTAGTTTGACTG+TGG | + | chr1_3:35857842-35857861 | Msa0116730:CDS | 45.0% |
| GTTGTTCCGTTGAAGAAGGT+TGG | + | chr1_3:35857930-35857949 | Msa0116730:CDS | 45.0% | |
| GTTGAGAGGCTTCTTAGTAG+TGG | + | chr1_3:35857993-35858012 | Msa0116730:CDS | 45.0% | |
| ! | TTTTGTTCCCTCCATTGCGT+CGG | + | chr1_3:35858016-35858035 | Msa0116730:CDS | 45.0% |
| GGTGTGAGAAGTGATTGTTG+GGG | - | chr1_3:35857292-35857311 | None:intergenic | 45.0% | |
| GGGTGTGAGAAGTGATTGTT+GGG | - | chr1_3:35857293-35857312 | None:intergenic | 45.0% | |
| AGGGTTTGAATCGGAAATGG+GGG | - | chr1_3:35857314-35857333 | None:intergenic | 45.0% | |
| GAGGGTTTGAATCGGAAATG+GGG | - | chr1_3:35857315-35857334 | None:intergenic | 45.0% | |
| GGAGGGTTTGAATCGGAAAT+GGG | - | chr1_3:35857316-35857335 | None:intergenic | 45.0% | |
| TTGAAGGAAGATGCGAAGAG+GGG | - | chr1_3:35857337-35857356 | None:intergenic | 45.0% | |
| GATTGAAGGAAGATGCGAAG+AGG | - | chr1_3:35857339-35857358 | None:intergenic | 45.0% | |
| TTGGGATATAGGCGTTAGTG+CGG | - | chr1_3:35857383-35857402 | None:intergenic | 45.0% | |
| !! | CCAGTGAAAAGGCATTGGAT+TGG | - | chr1_3:35857402-35857421 | None:intergenic | 45.0% |
| ! | CCAATCCAATGCCTTTTCAC+TGG | + | chr1_3:35857399-35857418 | Msa0116730:CDS | 45.0% |
| ! | ACTGGCCTCGTTGAAGAAAT+CGG | + | chr1_3:35857417-35857436 | Msa0116730:CDS | 45.0% |
| ATCGGCACCGTCAAAAAACT+CGG | + | chr1_3:35857435-35857454 | Msa0116730:CDS | 45.0% | |
| AAACTCGGCGAATCTCCTAA+CGG | + | chr1_3:35857450-35857469 | Msa0116730:CDS | 45.0% | |
| AACGCTCTTTCGAGATTCAC+CGG | - | chr1_3:35857660-35857679 | None:intergenic | 45.0% | |
| !! | TCTCGAAAGAGCGTTAACTC+CGG | + | chr1_3:35857665-35857684 | Msa0116730:CDS | 45.0% |
| GTTAACTCCGGTGAGTAGAA+TGG | + | chr1_3:35857677-35857696 | Msa0116730:CDS | 45.0% | |
| TTTGTTCAAGGTCACGTGGA+TGG | + | chr1_3:35857708-35857727 | Msa0116730:CDS | 45.0% | |
| ACCCACAAAGAATCTCCTTC+AGG | - | chr1_3:35857759-35857778 | None:intergenic | 45.0% | |
| GCCTAAAGGGTTTATTGCTG+TGG | + | chr1_3:35857821-35857840 | Msa0116730:CDS | 45.0% | |
| ! | GGATGGAACTAGTTTGACTG+TGG | + | chr1_3:35857842-35857861 | Msa0116730:CDS | 45.0% |
| GTTGTTCCGTTGAAGAAGGT+TGG | + | chr1_3:35857930-35857949 | Msa0116730:CDS | 45.0% | |
| GTTGAGAGGCTTCTTAGTAG+TGG | + | chr1_3:35857993-35858012 | Msa0116730:CDS | 45.0% | |
| ! | TTTTGTTCCCTCCATTGCGT+CGG | + | chr1_3:35858016-35858035 | Msa0116730:CDS | 45.0% |
| GGGGTGTGAGAAGTGATTGT+TGG | - | chr1_3:35857294-35857313 | None:intergenic | 50.0% | |
| GGGTTTGAATCGGAAATGGG+GGG | - | chr1_3:35857313-35857332 | None:intergenic | 50.0% | |
| GGGAGGGTTTGAATCGGAAA+TGG | - | chr1_3:35857317-35857336 | None:intergenic | 50.0% | |
| GAAGAGGGGAGGGTTTGAAT+CGG | - | chr1_3:35857323-35857342 | None:intergenic | 50.0% | |
| CTTCAACGAGGCCAGTGAAA+AGG | - | chr1_3:35857413-35857432 | None:intergenic | 50.0% | |
| TGTAAGTCGAAACCGCCGTT+AGG | - | chr1_3:35857468-35857487 | None:intergenic | 50.0% | |
| AACGCTAAAACCGTCCTCGA+CGG | + | chr1_3:35857492-35857511 | Msa0116730:CDS | 50.0% | |
| GGTCGAATTCTGTTACGGTG+AGG | - | chr1_3:35857557-35857576 | None:intergenic | 50.0% | |
| TGCTACACCGACGGTGAAAT+CGG | - | chr1_3:35857589-35857608 | None:intergenic | 50.0% | |
| TTCGAGATTCACCGGTGAAC+CGG | - | chr1_3:35857652-35857671 | None:intergenic | 50.0% | |
| TGTCCACCCATTCTACTCAC+CGG | - | chr1_3:35857687-35857706 | None:intergenic | 50.0% | |
| GAAGAATCCGACGCAATGGA+GGG | - | chr1_3:35858026-35858045 | None:intergenic | 50.0% | |
| TGAAGAATCCGACGCAATGG+AGG | - | chr1_3:35858027-35858046 | None:intergenic | 50.0% | |
| CCATGAAGAATCCGACGCAA+TGG | - | chr1_3:35858030-35858049 | None:intergenic | 50.0% | |
| CCATTGCGTCGGATTCTTCA+TGG | + | chr1_3:35858027-35858046 | Msa0116730:CDS | 50.0% | |
| GGGGTGTGAGAAGTGATTGT+TGG | - | chr1_3:35857294-35857313 | None:intergenic | 50.0% | |
| GGGTTTGAATCGGAAATGGG+GGG | - | chr1_3:35857313-35857332 | None:intergenic | 50.0% | |
| GGGAGGGTTTGAATCGGAAA+TGG | - | chr1_3:35857317-35857336 | None:intergenic | 50.0% | |
| GAAGAGGGGAGGGTTTGAAT+CGG | - | chr1_3:35857323-35857342 | None:intergenic | 50.0% | |
| CTTCAACGAGGCCAGTGAAA+AGG | - | chr1_3:35857413-35857432 | None:intergenic | 50.0% | |
| TGTAAGTCGAAACCGCCGTT+AGG | - | chr1_3:35857468-35857487 | None:intergenic | 50.0% | |
| AACGCTAAAACCGTCCTCGA+CGG | + | chr1_3:35857492-35857511 | Msa0116730:CDS | 50.0% | |
| GGTCGAATTCTGTTACGGTG+AGG | - | chr1_3:35857557-35857576 | None:intergenic | 50.0% | |
| TGCTACACCGACGGTGAAAT+CGG | - | chr1_3:35857589-35857608 | None:intergenic | 50.0% | |
| TTCGAGATTCACCGGTGAAC+CGG | - | chr1_3:35857652-35857671 | None:intergenic | 50.0% | |
| TGTCCACCCATTCTACTCAC+CGG | - | chr1_3:35857687-35857706 | None:intergenic | 50.0% | |
| GAAGAATCCGACGCAATGGA+GGG | - | chr1_3:35858026-35858045 | None:intergenic | 50.0% | |
| TGAAGAATCCGACGCAATGG+AGG | - | chr1_3:35858027-35858046 | None:intergenic | 50.0% | |
| CCATGAAGAATCCGACGCAA+TGG | - | chr1_3:35858030-35858049 | None:intergenic | 50.0% | |
| CCATTGCGTCGGATTCTTCA+TGG | + | chr1_3:35858027-35858046 | Msa0116730:CDS | 50.0% | |
| AGGAAGATGCGAAGAGGGGA+GGG | - | chr1_3:35857333-35857352 | None:intergenic | 55.0% | |
| AAGGAAGATGCGAAGAGGGG+AGG | - | chr1_3:35857334-35857353 | None:intergenic | 55.0% | |
| !! | TGGGTTTGCGGGTGGATTGA+AGG | - | chr1_3:35857353-35857372 | None:intergenic | 55.0% |
| !! | TGCGGAGAGTGATGGGTTTG+CGG | - | chr1_3:35857365-35857384 | None:intergenic | 55.0% |
| GCGTTAGTGCGGAGAGTGAT+GGG | - | chr1_3:35857372-35857391 | None:intergenic | 55.0% | |
| ! | CGAGGCCAGTGAAAAGGCAT+TGG | - | chr1_3:35857407-35857426 | None:intergenic | 55.0% |
| !! | CGGTGCCGATTTCTTCAACG+AGG | - | chr1_3:35857425-35857444 | None:intergenic | 55.0% |
| CGGTGAAATCGGAAGCGGTT+TGG | - | chr1_3:35857578-35857597 | None:intergenic | 55.0% | |
| ACCGCTTCCGATTTCACCGT+CGG | + | chr1_3:35857579-35857598 | Msa0116730:CDS | 55.0% | |
| ACCGACGGTGAAATCGGAAG+CGG | - | chr1_3:35857583-35857602 | None:intergenic | 55.0% | |
| TTTCACCGTCGGTGTAGCAC+CGG | + | chr1_3:35857590-35857609 | Msa0116730:CDS | 55.0% | |
| !! | AGTTTCCGGTGCTACACCGA+CGG | - | chr1_3:35857598-35857617 | None:intergenic | 55.0% |
| TCTCTCCTCGAACTCGAACC+CGG | + | chr1_3:35857630-35857649 | Msa0116730:CDS | 55.0% | |
| TCGAGATTCACCGGTGAACC+GGG | - | chr1_3:35857651-35857670 | None:intergenic | 55.0% | |
| ACTCCGGTGAGTAGAATGGG+TGG | + | chr1_3:35857681-35857700 | Msa0116730:CDS | 55.0% | |
| TCAAGGTCACGTGGATGGCA+CGG | + | chr1_3:35857713-35857732 | Msa0116730:CDS | 55.0% | |
| AGGAAGATGCGAAGAGGGGA+GGG | - | chr1_3:35857333-35857352 | None:intergenic | 55.0% | |
| AAGGAAGATGCGAAGAGGGG+AGG | - | chr1_3:35857334-35857353 | None:intergenic | 55.0% | |
| !! | TGGGTTTGCGGGTGGATTGA+AGG | - | chr1_3:35857353-35857372 | None:intergenic | 55.0% |
| !! | TGCGGAGAGTGATGGGTTTG+CGG | - | chr1_3:35857365-35857384 | None:intergenic | 55.0% |
| GCGTTAGTGCGGAGAGTGAT+GGG | - | chr1_3:35857372-35857391 | None:intergenic | 55.0% | |
| ! | CGAGGCCAGTGAAAAGGCAT+TGG | - | chr1_3:35857407-35857426 | None:intergenic | 55.0% |
| !! | CGGTGCCGATTTCTTCAACG+AGG | - | chr1_3:35857425-35857444 | None:intergenic | 55.0% |
| CGGTGAAATCGGAAGCGGTT+TGG | - | chr1_3:35857578-35857597 | None:intergenic | 55.0% | |
| ACCGCTTCCGATTTCACCGT+CGG | + | chr1_3:35857579-35857598 | Msa0116730:CDS | 55.0% | |
| ACCGACGGTGAAATCGGAAG+CGG | - | chr1_3:35857583-35857602 | None:intergenic | 55.0% | |
| TTTCACCGTCGGTGTAGCAC+CGG | + | chr1_3:35857590-35857609 | Msa0116730:CDS | 55.0% | |
| !! | AGTTTCCGGTGCTACACCGA+CGG | - | chr1_3:35857598-35857617 | None:intergenic | 55.0% |
| TCTCTCCTCGAACTCGAACC+CGG | + | chr1_3:35857630-35857649 | Msa0116730:CDS | 55.0% | |
| TCGAGATTCACCGGTGAACC+GGG | - | chr1_3:35857651-35857670 | None:intergenic | 55.0% | |
| ACTCCGGTGAGTAGAATGGG+TGG | + | chr1_3:35857681-35857700 | Msa0116730:CDS | 55.0% | |
| TCAAGGTCACGTGGATGGCA+CGG | + | chr1_3:35857713-35857732 | Msa0116730:CDS | 55.0% | |
| !! | GAGAGTGATGGGTTTGCGGG+TGG | - | chr1_3:35857361-35857380 | None:intergenic | 60.0% |
| !! | GCGGAGAGTGATGGGTTTGC+GGG | - | chr1_3:35857364-35857383 | None:intergenic | 60.0% |
| GGCGTTAGTGCGGAGAGTGA+TGG | - | chr1_3:35857373-35857392 | None:intergenic | 60.0% | |
| CTCGGCGAATCTCCTAACGG+CGG | + | chr1_3:35857453-35857472 | Msa0116730:CDS | 60.0% | |
| ! | GGTGAGGCATGTGCCGTTGA+CGG | - | chr1_3:35857541-35857560 | None:intergenic | 60.0% |
| ! | GTGAACCGGGTTCGAGTTCG+AGG | - | chr1_3:35857638-35857657 | None:intergenic | 60.0% |
| CGAACTCGAACCCGGTTCAC+CGG | + | chr1_3:35857638-35857657 | Msa0116730:CDS | 60.0% | |
| CAAGGTCACGTGGATGGCAC+GGG | + | chr1_3:35857714-35857733 | Msa0116730:CDS | 60.0% | |
| AAGGTCACGTGGATGGCACG+GGG | + | chr1_3:35857715-35857734 | Msa0116730:CDS | 60.0% | |
| !! | GAGAGTGATGGGTTTGCGGG+TGG | - | chr1_3:35857361-35857380 | None:intergenic | 60.0% |
| !! | GCGGAGAGTGATGGGTTTGC+GGG | - | chr1_3:35857364-35857383 | None:intergenic | 60.0% |
| GGCGTTAGTGCGGAGAGTGA+TGG | - | chr1_3:35857373-35857392 | None:intergenic | 60.0% | |
| CTCGGCGAATCTCCTAACGG+CGG | + | chr1_3:35857453-35857472 | Msa0116730:CDS | 60.0% | |
| ! | GGTGAGGCATGTGCCGTTGA+CGG | - | chr1_3:35857541-35857560 | None:intergenic | 60.0% |
| ! | GTGAACCGGGTTCGAGTTCG+AGG | - | chr1_3:35857638-35857657 | None:intergenic | 60.0% |
| CGAACTCGAACCCGGTTCAC+CGG | + | chr1_3:35857638-35857657 | Msa0116730:CDS | 60.0% | |
| CAAGGTCACGTGGATGGCAC+GGG | + | chr1_3:35857714-35857733 | Msa0116730:CDS | 60.0% | |
| AAGGTCACGTGGATGGCACG+GGG | + | chr1_3:35857715-35857734 | Msa0116730:CDS | 60.0% | |
| AAGGCTGACGCCGTCGAGGA+CGG | - | chr1_3:35857505-35857524 | None:intergenic | 65.0% | |
| TGACGGCGATGCTGTCGCCA+AGG | - | chr1_3:35857524-35857543 | None:intergenic | 65.0% | |
| GGCGACAGCATCGCCGTCAA+CGG | + | chr1_3:35857525-35857544 | Msa0116730:CDS | 65.0% | |
| AGGTCACGTGGATGGCACGG+GGG | + | chr1_3:35857716-35857735 | Msa0116730:CDS | 65.0% | |
| AAGGCTGACGCCGTCGAGGA+CGG | - | chr1_3:35857505-35857524 | None:intergenic | 65.0% | |
| TGACGGCGATGCTGTCGCCA+AGG | - | chr1_3:35857524-35857543 | None:intergenic | 65.0% | |
| GGCGACAGCATCGCCGTCAA+CGG | + | chr1_3:35857525-35857544 | Msa0116730:CDS | 65.0% | |
| AGGTCACGTGGATGGCACGG+GGG | + | chr1_3:35857716-35857735 | Msa0116730:CDS | 65.0% | |
| GTCCTCGACGGCGTCAGCCT+TGG | + | chr1_3:35857504-35857523 | Msa0116730:CDS | 70.0% | |
| GTCCTCGACGGCGTCAGCCT+TGG | + | chr1_3:35857504-35857523 | Msa0116730:CDS | 70.0% | |
| CGCCAAGGCTGACGCCGTCG+AGG | - | chr1_3:35857509-35857528 | None:intergenic | 75.0% | |
| CGCCAAGGCTGACGCCGTCG+AGG | - | chr1_3:35857509-35857528 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 35857243 | 35858067 | 35857243 | ID=Msa0116730;Name=Msa0116730 |
| chr1_3 | mRNA | 35857243 | 35858067 | 35857243 | ID=Msa0116730-mRNA-1;Parent=Msa0116730;Name=Msa0116730-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|274 |
| chr1_3 | exon | 35857243 | 35858067 | 35857243 | ID=Msa0116730-mRNA-1:exon:11609;Parent=Msa0116730-mRNA-1 |
| chr1_3 | CDS | 35857243 | 35858067 | 35857243 | ID=Msa0116730-mRNA-1:cds;Parent=Msa0116730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
