Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116640 | XP_013468250.1 | 96.350 | 274 | 10 | 0 | 1 | 274 | 1 | 274 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116640 | sp|Q9Y7P0|RISA_SCHPO | 50.746 | 201 | 95 | 2 | 57 | 257 | 1 | 197 | 1.88e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116640 | A0A072VKG0 | 96.350 | 274 | 10 | 0 | 1 | 274 | 1 | 274 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072720 | Msa0116640 | -0.830461 | 2.899382e-55 | -8.615850e-47 |
| Msa0116640 | Msa0116730 | 0.991342 | 3.807407e-187 | -8.615850e-47 |
| Msa0116640 | Msa0167980 | -0.813505 | 2.474648e-51 | -8.615850e-47 |
| Msa0116640 | Msa0204960 | -0.807167 | 5.769124e-50 | -8.615850e-47 |
| Msa0116640 | Msa0240900 | -0.821701 | 3.509975e-53 | -8.615850e-47 |
| Msa0116640 | Msa0257490 | -0.807178 | 5.737323e-50 | -8.615850e-47 |
| Msa0116640 | Msa0259210 | -0.812732 | 3.656080e-51 | -8.615850e-47 |
| Msa0116640 | Msa0259220 | -0.806448 | 8.184326e-50 | -8.615850e-47 |
| Msa0116640 | Msa0278570 | -0.812295 | 4.555429e-51 | -8.615850e-47 |
| Msa0116640 | Msa0281530 | -0.838787 | 2.336742e-57 | -8.615850e-47 |
| Msa0116640 | Msa0296790 | -0.801284 | 9.681463e-49 | -8.615850e-47 |
| Msa0116640 | Msa0317970 | -0.829777 | 4.257869e-55 | -8.615850e-47 |
| Msa0116640 | Msa0320590 | -0.817619 | 3.001524e-52 | -8.615850e-47 |
| Msa0116640 | Msa0336300 | -0.807650 | 4.556801e-50 | -8.615850e-47 |
| Msa0116640 | Msa0365100 | -0.801289 | 9.657973e-49 | -8.615850e-47 |
| Msa0116640 | Msa0382370 | -0.806016 | 1.009430e-49 | -8.615850e-47 |
| Msa0116640 | Msa0427120 | -0.800375 | 1.484520e-48 | -8.615850e-47 |
| Msa0116640 | Msa0432160 | -0.801687 | 8.004754e-49 | -8.615850e-47 |
| Msa0116640 | Msa0450400 | 0.816793 | 4.604183e-52 | -8.615850e-47 |
| Msa0116640 | Msa0452710 | -0.801727 | 7.853771e-49 | -8.615850e-47 |
| Msa0116640 | Msa0476680 | -0.804361 | 2.241473e-49 | -8.615850e-47 |
| Msa0116640 | Msa0521010 | -0.807123 | 5.894459e-50 | -8.615850e-47 |
| Msa0116640 | Msa0592270 | -0.811611 | 6.421617e-51 | -8.615850e-47 |
| Msa0116640 | Msa0822500 | -0.803870 | 2.836128e-49 | -8.615850e-47 |
| Msa0116640 | Msa1071050 | -0.808978 | 2.373900e-50 | -8.615850e-47 |
| Msa0116640 | Msa1089450 | -0.819294 | 1.252315e-52 | -8.615850e-47 |
| Msa0116640 | Msa1218450 | -0.812692 | 3.731419e-51 | -8.615850e-47 |
| Msa0116640 | Msa1390680 | -0.808330 | 3.265770e-50 | -8.615850e-47 |
| Msa0116640 | Msa1392890 | -0.808084 | 3.685214e-50 | -8.615850e-47 |
| Msa0116640 | Msa1420120 | -0.802857 | 4.597143e-49 | -8.615850e-47 |
| Msa0116640 | Msa1440310 | -0.810835 | 9.461727e-51 | -8.615850e-47 |
| Msa0116640 | Msa1449340 | 0.802955 | 4.387241e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116640 | MtrunA17_Chr1g0181701 | 96.350 | 274 | 10 | 0 | 1 | 274 | 1 | 274 | 0.0 | 540 |
| Msa0116640 | MtrunA17_Chr4g0021091 | 77.821 | 257 | 52 | 3 | 1 | 257 | 6 | 257 | 2.47e-143 | 402 |
| Msa0116640 | MtrunA17_Chr4g0031201 | 71.212 | 66 | 19 | 0 | 65 | 130 | 1 | 66 | 4.37e-25 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116640 | AT2G20690.1 | 72.464 | 207 | 54 | 2 | 52 | 258 | 59 | 262 | 8.93e-106 | 308 |
Find 86 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTTGTGGGTGAAGATT+AGG | 0.274378 | 1_3:+35726481 | Msa0116640:CDS |
| TTCGAGATTCACCGGTGAAC+CGG | 0.292035 | 1_3:-35726364 | None:intergenic |
| CCATTGCGTCGGATTCTTCA+TGG | 0.293548 | 1_3:+35726742 | Msa0116640:CDS |
| TTCTTTGTGGGTGAAGATTA+GGG | 0.311609 | 1_3:+35726482 | Msa0116640:CDS |
| AATCTTGAAGTTGATGTTCT+TGG | 0.314366 | 1_3:+35726678 | Msa0116640:CDS |
| GGGAGGGTTTGAATCGGAAA+TGG | 0.354448 | 1_3:-35726029 | None:intergenic |
| AAGGCATTGGATTGGGATAT+AGG | 0.356309 | 1_3:-35726106 | None:intergenic |
| GGAGGGTTTGAATCGGAAAT+GGG | 0.364764 | 1_3:-35726028 | None:intergenic |
| GGGTGTGAGAAGTGATTGTT+GGG | 0.369828 | 1_3:-35726005 | None:intergenic |
| GCGGAGAGTGATGGGTTTGC+GGG | 0.377969 | 1_3:-35726076 | None:intergenic |
| TTCTTCATGGTCTTCATCTC+AGG | 0.382525 | 1_3:+35726755 | Msa0116640:CDS |
| GAAGATTAGGGTTGAGAAGA+AGG | 0.393584 | 1_3:+35726494 | Msa0116640:CDS |
| GAGGGTTTGAATCGGAAATG+GGG | 0.405442 | 1_3:-35726027 | None:intergenic |
| AGGGTTTGAATCGGAAATGG+GGG | 0.410939 | 1_3:-35726026 | None:intergenic |
| TGCTACACCGACGGTGAAAT+CGG | 0.412121 | 1_3:-35726301 | None:intergenic |
| ACTGGCCTCGTTGAAGAAAT+CGG | 0.413747 | 1_3:+35726132 | Msa0116640:CDS |
| GGGGTGTGAGAAGTGATTGT+TGG | 0.420093 | 1_3:-35726006 | None:intergenic |
| TGAAGTATATTGTGCCTAAA+GGG | 0.429743 | 1_3:+35726523 | Msa0116640:CDS |
| TGGGTTTGCGGGTGGATTGA+AGG | 0.433810 | 1_3:-35726065 | None:intergenic |
| CAAGGTCACGTGGATGGCAC+GGG | 0.434702 | 1_3:+35726429 | Msa0116640:CDS |
| GTTGAAGAAGGTTGGTCAAA+AGG | 0.440224 | 1_3:+35726653 | Msa0116640:CDS |
| CAGTGAAAAGGCATTGGATT+GGG | 0.443221 | 1_3:-35726113 | None:intergenic |
| GTCCTCGACGGCGTCAGCCT+TGG | 0.444801 | 1_3:+35726219 | Msa0116640:CDS |
| TTGAAGTATATTGTGCCTAA+AGG | 0.450060 | 1_3:+35726522 | Msa0116640:CDS |
| AGGAAGATGCGAAGAGGGGA+GGG | 0.459067 | 1_3:-35726045 | None:intergenic |
| ATTGAAGGAAGATGCGAAGA+GGG | 0.466776 | 1_3:-35726050 | None:intergenic |
| TCAAGGTCACGTGGATGGCA+CGG | 0.471835 | 1_3:+35726428 | Msa0116640:CDS |
| CTTCAACGAGGCCAGTGAAA+AGG | 0.473804 | 1_3:-35726125 | None:intergenic |
| TCGAGATTCACCGGTGAACC+GGG | 0.474305 | 1_3:-35726363 | None:intergenic |
| TGCGGAGAGTGATGGGTTTG+CGG | 0.478744 | 1_3:-35726077 | None:intergenic |
| CGGTGAAATCGGAAGCGGTT+TGG | 0.487072 | 1_3:-35726290 | None:intergenic |
| GTTAACTCCGGTGAGTAGAA+TGG | 0.487110 | 1_3:+35726392 | Msa0116640:CDS |
| GATTGTTGTTCCGTTGAAGA+AGG | 0.488346 | 1_3:+35726641 | Msa0116640:CDS |
| GCCTAAAGGGTTTATTGCTG+TGG | 0.489656 | 1_3:+35726536 | Msa0116640:CDS |
| TGTAAGTCGAAACCGCCGTT+AGG | 0.491421 | 1_3:-35726180 | None:intergenic |
| GGTGAGGCATGTGCCGTTGA+CGG | 0.493251 | 1_3:-35726253 | None:intergenic |
| ACCCACAAAGAATCTCCTTC+AGG | 0.494962 | 1_3:-35726471 | None:intergenic |
| TCTCTCCTCGAACTCGAACC+CGG | 0.497578 | 1_3:+35726345 | Msa0116640:CDS |
| AAGGAAGATGCGAAGAGGGG+AGG | 0.502303 | 1_3:-35726046 | None:intergenic |
| AAAGGGTTTATTGCTGTGGA+TGG | 0.510430 | 1_3:+35726540 | Msa0116640:CDS |
| TTCCTGAAGGAGATTCTTTG+TGG | 0.511063 | 1_3:+35726469 | Msa0116640:CDS |
| GGGTTTGAATCGGAAATGGG+GGG | 0.513055 | 1_3:-35726025 | None:intergenic |
| GTGAACCGGGTTCGAGTTCG+AGG | 0.513466 | 1_3:-35726350 | None:intergenic |
| GCGTTAGTGCGGAGAGTGAT+GGG | 0.513733 | 1_3:-35726084 | None:intergenic |
| CGAGGCCAGTGAAAAGGCAT+TGG | 0.515599 | 1_3:-35726119 | None:intergenic |
| GTTGAGAGGCTTCTTAGTAG+TGG | 0.517944 | 1_3:+35726708 | Msa0116640:CDS |
| TTAACTCCGGTGAGTAGAAT+GGG | 0.518507 | 1_3:+35726393 | Msa0116640:CDS |
| AACGCTCTTTCGAGATTCAC+CGG | 0.519943 | 1_3:-35726372 | None:intergenic |
| GTTGTTCCGTTGAAGAAGGT+TGG | 0.522636 | 1_3:+35726645 | Msa0116640:CDS |
| CGAACTCGAACCCGGTTCAC+CGG | 0.526596 | 1_3:+35726353 | Msa0116640:CDS |
| GGCGTTAGTGCGGAGAGTGA+TGG | 0.530544 | 1_3:-35726085 | None:intergenic |
| GGTTTGGTCGAATTCTGTTA+CGG | 0.531348 | 1_3:-35726274 | None:intergenic |
| CCAGTGAAAAGGCATTGGAT+TGG | 0.536141 | 1_3:-35726114 | None:intergenic |
| AAGGCTGACGCCGTCGAGGA+CGG | 0.544414 | 1_3:-35726217 | None:intergenic |
| TCCTGAAGGAGATTCTTTGT+GGG | 0.545465 | 1_3:+35726470 | Msa0116640:CDS |
| ACCGCTTCCGATTTCACCGT+CGG | 0.547391 | 1_3:+35726294 | Msa0116640:CDS |
| GGCGACAGCATCGCCGTCAA+CGG | 0.553466 | 1_3:+35726240 | Msa0116640:CDS |
| GAGAGTGATGGGTTTGCGGG+TGG | 0.555610 | 1_3:-35726073 | None:intergenic |
| TTGAAGGAAGATGCGAAGAG+GGG | 0.557197 | 1_3:-35726049 | None:intergenic |
| TTTGTTCAAGGTCACGTGGA+TGG | 0.569387 | 1_3:+35726423 | Msa0116640:CDS |
| TCCACAGCAATAAACCCTTT+AGG | 0.573093 | 1_3:-35726537 | None:intergenic |
| AAGGTCACGTGGATGGCACG+GGG | 0.573506 | 1_3:+35726430 | Msa0116640:CDS |
| TTTCACCGTCGGTGTAGCAC+CGG | 0.574525 | 1_3:+35726305 | Msa0116640:CDS |
| TGAAGAATCCGACGCAATGG+AGG | 0.588079 | 1_3:-35726739 | None:intergenic |
| ATTGTTTCGATGATTCCTGA+AGG | 0.590711 | 1_3:+35726456 | Msa0116640:CDS |
| GAAGAGGGGAGGGTTTGAAT+CGG | 0.593742 | 1_3:-35726035 | None:intergenic |
| TGACGGCGATGCTGTCGCCA+AGG | 0.594031 | 1_3:-35726236 | None:intergenic |
| CCATGAAGAATCCGACGCAA+TGG | 0.597904 | 1_3:-35726742 | None:intergenic |
| CGCCAAGGCTGACGCCGTCG+AGG | 0.600871 | 1_3:-35726221 | None:intergenic |
| GAAGAATCCGACGCAATGGA+GGG | 0.605645 | 1_3:-35726738 | None:intergenic |
| TCTCGAAAGAGCGTTAACTC+CGG | 0.607673 | 1_3:+35726380 | Msa0116640:CDS |
| TTCTTGGTAAGCATGTTGAG+AGG | 0.623953 | 1_3:+35726694 | Msa0116640:CDS |
| ACCGACGGTGAAATCGGAAG+CGG | 0.625549 | 1_3:-35726295 | None:intergenic |
| TGTCCACCCATTCTACTCAC+CGG | 0.626670 | 1_3:-35726399 | None:intergenic |
| GGTCGAATTCTGTTACGGTG+AGG | 0.631616 | 1_3:-35726269 | None:intergenic |
| GATTGAAGGAAGATGCGAAG+AGG | 0.634655 | 1_3:-35726051 | None:intergenic |
| AACGCTAAAACCGTCCTCGA+CGG | 0.653931 | 1_3:+35726207 | Msa0116640:CDS |
| AAACTCGGCGAATCTCCTAA+CGG | 0.657767 | 1_3:+35726165 | Msa0116640:CDS |
| GGATGGAACTAGTTTGACTG+TGG | 0.662256 | 1_3:+35726557 | Msa0116640:CDS |
| CGGTGCCGATTTCTTCAACG+AGG | 0.662620 | 1_3:-35726137 | None:intergenic |
| TTGGGATATAGGCGTTAGTG+CGG | 0.668315 | 1_3:-35726095 | None:intergenic |
| AGTTTCCGGTGCTACACCGA+CGG | 0.673432 | 1_3:-35726310 | None:intergenic |
| AGGTCACGTGGATGGCACGG+GGG | 0.687554 | 1_3:+35726431 | Msa0116640:CDS |
| GGTGTGAGAAGTGATTGTTG+GGG | 0.689928 | 1_3:-35726004 | None:intergenic |
| ACTCCGGTGAGTAGAATGGG+TGG | 0.693744 | 1_3:+35726396 | Msa0116640:CDS |
| CTCGGCGAATCTCCTAACGG+CGG | 0.750828 | 1_3:+35726168 | Msa0116640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGGTTGTTTTAATTTTATGT+TGG | + | chr1_3:35726599-35726618 | Msa0116640:CDS | 20.0% |
| !!! | AGGTTGTTTTAATTTTATGT+TGG | + | chr1_3:35726599-35726618 | Msa0116640:CDS | 20.0% |
| TTGAAGTATATTGTGCCTAA+AGG | + | chr1_3:35726522-35726541 | Msa0116640:CDS | 30.0% | |
| TGAAGTATATTGTGCCTAAA+GGG | + | chr1_3:35726523-35726542 | Msa0116640:CDS | 30.0% | |
| !!! | GTTGATGTTTTTGATGATGA+AGG | + | chr1_3:35726579-35726598 | Msa0116640:CDS | 30.0% |
| !! | AATCTTGAAGTTGATGTTCT+TGG | + | chr1_3:35726678-35726697 | Msa0116640:CDS | 30.0% |
| TTGAAGTATATTGTGCCTAA+AGG | + | chr1_3:35726522-35726541 | Msa0116640:CDS | 30.0% | |
| TGAAGTATATTGTGCCTAAA+GGG | + | chr1_3:35726523-35726542 | Msa0116640:CDS | 30.0% | |
| !!! | GTTGATGTTTTTGATGATGA+AGG | + | chr1_3:35726579-35726598 | Msa0116640:CDS | 30.0% |
| !! | AATCTTGAAGTTGATGTTCT+TGG | + | chr1_3:35726678-35726697 | Msa0116640:CDS | 30.0% |
| ! | GGTTTTTGATGTTAAGGTGA+TGG | - | chr1_3:35725986-35726005 | None:intergenic | 35.0% |
| ! | TGTTGGGGTTTTTGATGTTA+AGG | - | chr1_3:35725992-35726011 | None:intergenic | 35.0% |
| ! | GATGTTTTTCTCAGAGTTTC+CGG | - | chr1_3:35726327-35726346 | None:intergenic | 35.0% |
| ATTGTTTCGATGATTCCTGA+AGG | + | chr1_3:35726456-35726475 | Msa0116640:CDS | 35.0% | |
| ATTCTTTGTGGGTGAAGATT+AGG | + | chr1_3:35726481-35726500 | Msa0116640:CDS | 35.0% | |
| TTCTTTGTGGGTGAAGATTA+GGG | + | chr1_3:35726482-35726501 | Msa0116640:CDS | 35.0% | |
| ! | TTTTGACCAACCTTCTTCAA+CGG | - | chr1_3:35726654-35726673 | None:intergenic | 35.0% |
| ! | GGTTTTTGATGTTAAGGTGA+TGG | - | chr1_3:35725986-35726005 | None:intergenic | 35.0% |
| ! | TGTTGGGGTTTTTGATGTTA+AGG | - | chr1_3:35725992-35726011 | None:intergenic | 35.0% |
| ! | GATGTTTTTCTCAGAGTTTC+CGG | - | chr1_3:35726327-35726346 | None:intergenic | 35.0% |
| ATTGTTTCGATGATTCCTGA+AGG | + | chr1_3:35726456-35726475 | Msa0116640:CDS | 35.0% | |
| ATTCTTTGTGGGTGAAGATT+AGG | + | chr1_3:35726481-35726500 | Msa0116640:CDS | 35.0% | |
| TTCTTTGTGGGTGAAGATTA+GGG | + | chr1_3:35726482-35726501 | Msa0116640:CDS | 35.0% | |
| ! | TTTTGACCAACCTTCTTCAA+CGG | - | chr1_3:35726654-35726673 | None:intergenic | 35.0% |
| ATTGAAGGAAGATGCGAAGA+GGG | - | chr1_3:35726053-35726072 | None:intergenic | 40.0% | |
| !! | AAGGCATTGGATTGGGATAT+AGG | - | chr1_3:35726109-35726128 | None:intergenic | 40.0% |
| !! | CAGTGAAAAGGCATTGGATT+GGG | - | chr1_3:35726116-35726135 | None:intergenic | 40.0% |
| !!! | AGATTCGCCGAGTTTTTTGA+CGG | - | chr1_3:35726160-35726179 | None:intergenic | 40.0% |
| ! | GGTTTGGTCGAATTCTGTTA+CGG | - | chr1_3:35726277-35726296 | None:intergenic | 40.0% |
| TTAACTCCGGTGAGTAGAAT+GGG | + | chr1_3:35726393-35726412 | Msa0116640:CDS | 40.0% | |
| ! | ATGGGTGGACATTTTGTTCA+AGG | + | chr1_3:35726411-35726430 | Msa0116640:CDS | 40.0% |
| ! | ACATTTTGTTCAAGGTCACG+TGG | + | chr1_3:35726419-35726438 | Msa0116640:CDS | 40.0% |
| TTCCTGAAGGAGATTCTTTG+TGG | + | chr1_3:35726469-35726488 | Msa0116640:CDS | 40.0% | |
| TCCTGAAGGAGATTCTTTGT+GGG | + | chr1_3:35726470-35726489 | Msa0116640:CDS | 40.0% | |
| GAAGATTAGGGTTGAGAAGA+AGG | + | chr1_3:35726494-35726513 | Msa0116640:CDS | 40.0% | |
| TCCACAGCAATAAACCCTTT+AGG | - | chr1_3:35726540-35726559 | None:intergenic | 40.0% | |
| AAAGGGTTTATTGCTGTGGA+TGG | + | chr1_3:35726540-35726559 | Msa0116640:CDS | 40.0% | |
| ! | GATTGTTGTTCCGTTGAAGA+AGG | + | chr1_3:35726641-35726660 | Msa0116640:CDS | 40.0% |
| ! | GTTGAAGAAGGTTGGTCAAA+AGG | + | chr1_3:35726653-35726672 | Msa0116640:CDS | 40.0% |
| TTCTTGGTAAGCATGTTGAG+AGG | + | chr1_3:35726694-35726713 | Msa0116640:CDS | 40.0% | |
| TTCTTCATGGTCTTCATCTC+AGG | + | chr1_3:35726755-35726774 | Msa0116640:CDS | 40.0% | |
| ATTGAAGGAAGATGCGAAGA+GGG | - | chr1_3:35726053-35726072 | None:intergenic | 40.0% | |
| !! | AAGGCATTGGATTGGGATAT+AGG | - | chr1_3:35726109-35726128 | None:intergenic | 40.0% |
| !! | CAGTGAAAAGGCATTGGATT+GGG | - | chr1_3:35726116-35726135 | None:intergenic | 40.0% |
| !!! | AGATTCGCCGAGTTTTTTGA+CGG | - | chr1_3:35726160-35726179 | None:intergenic | 40.0% |
| ! | GGTTTGGTCGAATTCTGTTA+CGG | - | chr1_3:35726277-35726296 | None:intergenic | 40.0% |
| TTAACTCCGGTGAGTAGAAT+GGG | + | chr1_3:35726393-35726412 | Msa0116640:CDS | 40.0% | |
| ! | ATGGGTGGACATTTTGTTCA+AGG | + | chr1_3:35726411-35726430 | Msa0116640:CDS | 40.0% |
| ! | ACATTTTGTTCAAGGTCACG+TGG | + | chr1_3:35726419-35726438 | Msa0116640:CDS | 40.0% |
| TTCCTGAAGGAGATTCTTTG+TGG | + | chr1_3:35726469-35726488 | Msa0116640:CDS | 40.0% | |
| TCCTGAAGGAGATTCTTTGT+GGG | + | chr1_3:35726470-35726489 | Msa0116640:CDS | 40.0% | |
| GAAGATTAGGGTTGAGAAGA+AGG | + | chr1_3:35726494-35726513 | Msa0116640:CDS | 40.0% | |
| TCCACAGCAATAAACCCTTT+AGG | - | chr1_3:35726540-35726559 | None:intergenic | 40.0% | |
| AAAGGGTTTATTGCTGTGGA+TGG | + | chr1_3:35726540-35726559 | Msa0116640:CDS | 40.0% | |
| ! | GATTGTTGTTCCGTTGAAGA+AGG | + | chr1_3:35726641-35726660 | Msa0116640:CDS | 40.0% |
| ! | GTTGAAGAAGGTTGGTCAAA+AGG | + | chr1_3:35726653-35726672 | Msa0116640:CDS | 40.0% |
| TTCTTGGTAAGCATGTTGAG+AGG | + | chr1_3:35726694-35726713 | Msa0116640:CDS | 40.0% | |
| TTCTTCATGGTCTTCATCTC+AGG | + | chr1_3:35726755-35726774 | Msa0116640:CDS | 40.0% | |
| GGTGTGAGAAGTGATTGTTG+GGG | - | chr1_3:35726007-35726026 | None:intergenic | 45.0% | |
| GGGTGTGAGAAGTGATTGTT+GGG | - | chr1_3:35726008-35726027 | None:intergenic | 45.0% | |
| AGGGTTTGAATCGGAAATGG+GGG | - | chr1_3:35726029-35726048 | None:intergenic | 45.0% | |
| GAGGGTTTGAATCGGAAATG+GGG | - | chr1_3:35726030-35726049 | None:intergenic | 45.0% | |
| GGAGGGTTTGAATCGGAAAT+GGG | - | chr1_3:35726031-35726050 | None:intergenic | 45.0% | |
| TTGAAGGAAGATGCGAAGAG+GGG | - | chr1_3:35726052-35726071 | None:intergenic | 45.0% | |
| GATTGAAGGAAGATGCGAAG+AGG | - | chr1_3:35726054-35726073 | None:intergenic | 45.0% | |
| TTGGGATATAGGCGTTAGTG+CGG | - | chr1_3:35726098-35726117 | None:intergenic | 45.0% | |
| !! | CCAGTGAAAAGGCATTGGAT+TGG | - | chr1_3:35726117-35726136 | None:intergenic | 45.0% |
| ! | CCAATCCAATGCCTTTTCAC+TGG | + | chr1_3:35726114-35726133 | Msa0116640:CDS | 45.0% |
| ! | ACTGGCCTCGTTGAAGAAAT+CGG | + | chr1_3:35726132-35726151 | Msa0116640:CDS | 45.0% |
| ATCGGCACCGTCAAAAAACT+CGG | + | chr1_3:35726150-35726169 | Msa0116640:CDS | 45.0% | |
| AAACTCGGCGAATCTCCTAA+CGG | + | chr1_3:35726165-35726184 | Msa0116640:CDS | 45.0% | |
| AACGCTCTTTCGAGATTCAC+CGG | - | chr1_3:35726375-35726394 | None:intergenic | 45.0% | |
| !! | TCTCGAAAGAGCGTTAACTC+CGG | + | chr1_3:35726380-35726399 | Msa0116640:CDS | 45.0% |
| GTTAACTCCGGTGAGTAGAA+TGG | + | chr1_3:35726392-35726411 | Msa0116640:CDS | 45.0% | |
| TTTGTTCAAGGTCACGTGGA+TGG | + | chr1_3:35726423-35726442 | Msa0116640:CDS | 45.0% | |
| ACCCACAAAGAATCTCCTTC+AGG | - | chr1_3:35726474-35726493 | None:intergenic | 45.0% | |
| GCCTAAAGGGTTTATTGCTG+TGG | + | chr1_3:35726536-35726555 | Msa0116640:CDS | 45.0% | |
| ! | GGATGGAACTAGTTTGACTG+TGG | + | chr1_3:35726557-35726576 | Msa0116640:CDS | 45.0% |
| GTTGTTCCGTTGAAGAAGGT+TGG | + | chr1_3:35726645-35726664 | Msa0116640:CDS | 45.0% | |
| GTTGAGAGGCTTCTTAGTAG+TGG | + | chr1_3:35726708-35726727 | Msa0116640:CDS | 45.0% | |
| ! | TTTTGTTCCCTCCATTGCGT+CGG | + | chr1_3:35726731-35726750 | Msa0116640:CDS | 45.0% |
| GGTGTGAGAAGTGATTGTTG+GGG | - | chr1_3:35726007-35726026 | None:intergenic | 45.0% | |
| GGGTGTGAGAAGTGATTGTT+GGG | - | chr1_3:35726008-35726027 | None:intergenic | 45.0% | |
| AGGGTTTGAATCGGAAATGG+GGG | - | chr1_3:35726029-35726048 | None:intergenic | 45.0% | |
| GAGGGTTTGAATCGGAAATG+GGG | - | chr1_3:35726030-35726049 | None:intergenic | 45.0% | |
| GGAGGGTTTGAATCGGAAAT+GGG | - | chr1_3:35726031-35726050 | None:intergenic | 45.0% | |
| TTGAAGGAAGATGCGAAGAG+GGG | - | chr1_3:35726052-35726071 | None:intergenic | 45.0% | |
| GATTGAAGGAAGATGCGAAG+AGG | - | chr1_3:35726054-35726073 | None:intergenic | 45.0% | |
| TTGGGATATAGGCGTTAGTG+CGG | - | chr1_3:35726098-35726117 | None:intergenic | 45.0% | |
| !! | CCAGTGAAAAGGCATTGGAT+TGG | - | chr1_3:35726117-35726136 | None:intergenic | 45.0% |
| ! | CCAATCCAATGCCTTTTCAC+TGG | + | chr1_3:35726114-35726133 | Msa0116640:CDS | 45.0% |
| ! | ACTGGCCTCGTTGAAGAAAT+CGG | + | chr1_3:35726132-35726151 | Msa0116640:CDS | 45.0% |
| ATCGGCACCGTCAAAAAACT+CGG | + | chr1_3:35726150-35726169 | Msa0116640:CDS | 45.0% | |
| AAACTCGGCGAATCTCCTAA+CGG | + | chr1_3:35726165-35726184 | Msa0116640:CDS | 45.0% | |
| AACGCTCTTTCGAGATTCAC+CGG | - | chr1_3:35726375-35726394 | None:intergenic | 45.0% | |
| !! | TCTCGAAAGAGCGTTAACTC+CGG | + | chr1_3:35726380-35726399 | Msa0116640:CDS | 45.0% |
| GTTAACTCCGGTGAGTAGAA+TGG | + | chr1_3:35726392-35726411 | Msa0116640:CDS | 45.0% | |
| TTTGTTCAAGGTCACGTGGA+TGG | + | chr1_3:35726423-35726442 | Msa0116640:CDS | 45.0% | |
| ACCCACAAAGAATCTCCTTC+AGG | - | chr1_3:35726474-35726493 | None:intergenic | 45.0% | |
| GCCTAAAGGGTTTATTGCTG+TGG | + | chr1_3:35726536-35726555 | Msa0116640:CDS | 45.0% | |
| ! | GGATGGAACTAGTTTGACTG+TGG | + | chr1_3:35726557-35726576 | Msa0116640:CDS | 45.0% |
| GTTGTTCCGTTGAAGAAGGT+TGG | + | chr1_3:35726645-35726664 | Msa0116640:CDS | 45.0% | |
| GTTGAGAGGCTTCTTAGTAG+TGG | + | chr1_3:35726708-35726727 | Msa0116640:CDS | 45.0% | |
| ! | TTTTGTTCCCTCCATTGCGT+CGG | + | chr1_3:35726731-35726750 | Msa0116640:CDS | 45.0% |
| GGGGTGTGAGAAGTGATTGT+TGG | - | chr1_3:35726009-35726028 | None:intergenic | 50.0% | |
| GGGTTTGAATCGGAAATGGG+GGG | - | chr1_3:35726028-35726047 | None:intergenic | 50.0% | |
| GGGAGGGTTTGAATCGGAAA+TGG | - | chr1_3:35726032-35726051 | None:intergenic | 50.0% | |
| GAAGAGGGGAGGGTTTGAAT+CGG | - | chr1_3:35726038-35726057 | None:intergenic | 50.0% | |
| CTTCAACGAGGCCAGTGAAA+AGG | - | chr1_3:35726128-35726147 | None:intergenic | 50.0% | |
| TGTAAGTCGAAACCGCCGTT+AGG | - | chr1_3:35726183-35726202 | None:intergenic | 50.0% | |
| AACGCTAAAACCGTCCTCGA+CGG | + | chr1_3:35726207-35726226 | Msa0116640:CDS | 50.0% | |
| GGTCGAATTCTGTTACGGTG+AGG | - | chr1_3:35726272-35726291 | None:intergenic | 50.0% | |
| TGCTACACCGACGGTGAAAT+CGG | - | chr1_3:35726304-35726323 | None:intergenic | 50.0% | |
| TTCGAGATTCACCGGTGAAC+CGG | - | chr1_3:35726367-35726386 | None:intergenic | 50.0% | |
| TGTCCACCCATTCTACTCAC+CGG | - | chr1_3:35726402-35726421 | None:intergenic | 50.0% | |
| GAAGAATCCGACGCAATGGA+GGG | - | chr1_3:35726741-35726760 | None:intergenic | 50.0% | |
| TGAAGAATCCGACGCAATGG+AGG | - | chr1_3:35726742-35726761 | None:intergenic | 50.0% | |
| CCATGAAGAATCCGACGCAA+TGG | - | chr1_3:35726745-35726764 | None:intergenic | 50.0% | |
| CCATTGCGTCGGATTCTTCA+TGG | + | chr1_3:35726742-35726761 | Msa0116640:CDS | 50.0% | |
| GGGGTGTGAGAAGTGATTGT+TGG | - | chr1_3:35726009-35726028 | None:intergenic | 50.0% | |
| GGGTTTGAATCGGAAATGGG+GGG | - | chr1_3:35726028-35726047 | None:intergenic | 50.0% | |
| GGGAGGGTTTGAATCGGAAA+TGG | - | chr1_3:35726032-35726051 | None:intergenic | 50.0% | |
| GAAGAGGGGAGGGTTTGAAT+CGG | - | chr1_3:35726038-35726057 | None:intergenic | 50.0% | |
| CTTCAACGAGGCCAGTGAAA+AGG | - | chr1_3:35726128-35726147 | None:intergenic | 50.0% | |
| TGTAAGTCGAAACCGCCGTT+AGG | - | chr1_3:35726183-35726202 | None:intergenic | 50.0% | |
| AACGCTAAAACCGTCCTCGA+CGG | + | chr1_3:35726207-35726226 | Msa0116640:CDS | 50.0% | |
| GGTCGAATTCTGTTACGGTG+AGG | - | chr1_3:35726272-35726291 | None:intergenic | 50.0% | |
| TGCTACACCGACGGTGAAAT+CGG | - | chr1_3:35726304-35726323 | None:intergenic | 50.0% | |
| TTCGAGATTCACCGGTGAAC+CGG | - | chr1_3:35726367-35726386 | None:intergenic | 50.0% | |
| TGTCCACCCATTCTACTCAC+CGG | - | chr1_3:35726402-35726421 | None:intergenic | 50.0% | |
| GAAGAATCCGACGCAATGGA+GGG | - | chr1_3:35726741-35726760 | None:intergenic | 50.0% | |
| TGAAGAATCCGACGCAATGG+AGG | - | chr1_3:35726742-35726761 | None:intergenic | 50.0% | |
| CCATGAAGAATCCGACGCAA+TGG | - | chr1_3:35726745-35726764 | None:intergenic | 50.0% | |
| CCATTGCGTCGGATTCTTCA+TGG | + | chr1_3:35726742-35726761 | Msa0116640:CDS | 50.0% | |
| AGGAAGATGCGAAGAGGGGA+GGG | - | chr1_3:35726048-35726067 | None:intergenic | 55.0% | |
| AAGGAAGATGCGAAGAGGGG+AGG | - | chr1_3:35726049-35726068 | None:intergenic | 55.0% | |
| !! | TGGGTTTGCGGGTGGATTGA+AGG | - | chr1_3:35726068-35726087 | None:intergenic | 55.0% |
| !! | TGCGGAGAGTGATGGGTTTG+CGG | - | chr1_3:35726080-35726099 | None:intergenic | 55.0% |
| GCGTTAGTGCGGAGAGTGAT+GGG | - | chr1_3:35726087-35726106 | None:intergenic | 55.0% | |
| ! | CGAGGCCAGTGAAAAGGCAT+TGG | - | chr1_3:35726122-35726141 | None:intergenic | 55.0% |
| !! | CGGTGCCGATTTCTTCAACG+AGG | - | chr1_3:35726140-35726159 | None:intergenic | 55.0% |
| CGGTGAAATCGGAAGCGGTT+TGG | - | chr1_3:35726293-35726312 | None:intergenic | 55.0% | |
| ACCGCTTCCGATTTCACCGT+CGG | + | chr1_3:35726294-35726313 | Msa0116640:CDS | 55.0% | |
| ACCGACGGTGAAATCGGAAG+CGG | - | chr1_3:35726298-35726317 | None:intergenic | 55.0% | |
| TTTCACCGTCGGTGTAGCAC+CGG | + | chr1_3:35726305-35726324 | Msa0116640:CDS | 55.0% | |
| !! | AGTTTCCGGTGCTACACCGA+CGG | - | chr1_3:35726313-35726332 | None:intergenic | 55.0% |
| TCTCTCCTCGAACTCGAACC+CGG | + | chr1_3:35726345-35726364 | Msa0116640:CDS | 55.0% | |
| TCGAGATTCACCGGTGAACC+GGG | - | chr1_3:35726366-35726385 | None:intergenic | 55.0% | |
| ACTCCGGTGAGTAGAATGGG+TGG | + | chr1_3:35726396-35726415 | Msa0116640:CDS | 55.0% | |
| TCAAGGTCACGTGGATGGCA+CGG | + | chr1_3:35726428-35726447 | Msa0116640:CDS | 55.0% | |
| AGGAAGATGCGAAGAGGGGA+GGG | - | chr1_3:35726048-35726067 | None:intergenic | 55.0% | |
| AAGGAAGATGCGAAGAGGGG+AGG | - | chr1_3:35726049-35726068 | None:intergenic | 55.0% | |
| !! | TGGGTTTGCGGGTGGATTGA+AGG | - | chr1_3:35726068-35726087 | None:intergenic | 55.0% |
| !! | TGCGGAGAGTGATGGGTTTG+CGG | - | chr1_3:35726080-35726099 | None:intergenic | 55.0% |
| GCGTTAGTGCGGAGAGTGAT+GGG | - | chr1_3:35726087-35726106 | None:intergenic | 55.0% | |
| ! | CGAGGCCAGTGAAAAGGCAT+TGG | - | chr1_3:35726122-35726141 | None:intergenic | 55.0% |
| !! | CGGTGCCGATTTCTTCAACG+AGG | - | chr1_3:35726140-35726159 | None:intergenic | 55.0% |
| CGGTGAAATCGGAAGCGGTT+TGG | - | chr1_3:35726293-35726312 | None:intergenic | 55.0% | |
| ACCGCTTCCGATTTCACCGT+CGG | + | chr1_3:35726294-35726313 | Msa0116640:CDS | 55.0% | |
| ACCGACGGTGAAATCGGAAG+CGG | - | chr1_3:35726298-35726317 | None:intergenic | 55.0% | |
| TTTCACCGTCGGTGTAGCAC+CGG | + | chr1_3:35726305-35726324 | Msa0116640:CDS | 55.0% | |
| !! | AGTTTCCGGTGCTACACCGA+CGG | - | chr1_3:35726313-35726332 | None:intergenic | 55.0% |
| TCTCTCCTCGAACTCGAACC+CGG | + | chr1_3:35726345-35726364 | Msa0116640:CDS | 55.0% | |
| TCGAGATTCACCGGTGAACC+GGG | - | chr1_3:35726366-35726385 | None:intergenic | 55.0% | |
| ACTCCGGTGAGTAGAATGGG+TGG | + | chr1_3:35726396-35726415 | Msa0116640:CDS | 55.0% | |
| TCAAGGTCACGTGGATGGCA+CGG | + | chr1_3:35726428-35726447 | Msa0116640:CDS | 55.0% | |
| !! | GAGAGTGATGGGTTTGCGGG+TGG | - | chr1_3:35726076-35726095 | None:intergenic | 60.0% |
| !! | GCGGAGAGTGATGGGTTTGC+GGG | - | chr1_3:35726079-35726098 | None:intergenic | 60.0% |
| GGCGTTAGTGCGGAGAGTGA+TGG | - | chr1_3:35726088-35726107 | None:intergenic | 60.0% | |
| CTCGGCGAATCTCCTAACGG+CGG | + | chr1_3:35726168-35726187 | Msa0116640:CDS | 60.0% | |
| ! | GGTGAGGCATGTGCCGTTGA+CGG | - | chr1_3:35726256-35726275 | None:intergenic | 60.0% |
| ! | GTGAACCGGGTTCGAGTTCG+AGG | - | chr1_3:35726353-35726372 | None:intergenic | 60.0% |
| CGAACTCGAACCCGGTTCAC+CGG | + | chr1_3:35726353-35726372 | Msa0116640:CDS | 60.0% | |
| CAAGGTCACGTGGATGGCAC+GGG | + | chr1_3:35726429-35726448 | Msa0116640:CDS | 60.0% | |
| AAGGTCACGTGGATGGCACG+GGG | + | chr1_3:35726430-35726449 | Msa0116640:CDS | 60.0% | |
| !! | GAGAGTGATGGGTTTGCGGG+TGG | - | chr1_3:35726076-35726095 | None:intergenic | 60.0% |
| !! | GCGGAGAGTGATGGGTTTGC+GGG | - | chr1_3:35726079-35726098 | None:intergenic | 60.0% |
| GGCGTTAGTGCGGAGAGTGA+TGG | - | chr1_3:35726088-35726107 | None:intergenic | 60.0% | |
| CTCGGCGAATCTCCTAACGG+CGG | + | chr1_3:35726168-35726187 | Msa0116640:CDS | 60.0% | |
| ! | GGTGAGGCATGTGCCGTTGA+CGG | - | chr1_3:35726256-35726275 | None:intergenic | 60.0% |
| ! | GTGAACCGGGTTCGAGTTCG+AGG | - | chr1_3:35726353-35726372 | None:intergenic | 60.0% |
| CGAACTCGAACCCGGTTCAC+CGG | + | chr1_3:35726353-35726372 | Msa0116640:CDS | 60.0% | |
| CAAGGTCACGTGGATGGCAC+GGG | + | chr1_3:35726429-35726448 | Msa0116640:CDS | 60.0% | |
| AAGGTCACGTGGATGGCACG+GGG | + | chr1_3:35726430-35726449 | Msa0116640:CDS | 60.0% | |
| AAGGCTGACGCCGTCGAGGA+CGG | - | chr1_3:35726220-35726239 | None:intergenic | 65.0% | |
| TGACGGCGATGCTGTCGCCA+AGG | - | chr1_3:35726239-35726258 | None:intergenic | 65.0% | |
| GGCGACAGCATCGCCGTCAA+CGG | + | chr1_3:35726240-35726259 | Msa0116640:CDS | 65.0% | |
| AGGTCACGTGGATGGCACGG+GGG | + | chr1_3:35726431-35726450 | Msa0116640:CDS | 65.0% | |
| AAGGCTGACGCCGTCGAGGA+CGG | - | chr1_3:35726220-35726239 | None:intergenic | 65.0% | |
| TGACGGCGATGCTGTCGCCA+AGG | - | chr1_3:35726239-35726258 | None:intergenic | 65.0% | |
| GGCGACAGCATCGCCGTCAA+CGG | + | chr1_3:35726240-35726259 | Msa0116640:CDS | 65.0% | |
| AGGTCACGTGGATGGCACGG+GGG | + | chr1_3:35726431-35726450 | Msa0116640:CDS | 65.0% | |
| GTCCTCGACGGCGTCAGCCT+TGG | + | chr1_3:35726219-35726238 | Msa0116640:CDS | 70.0% | |
| GTCCTCGACGGCGTCAGCCT+TGG | + | chr1_3:35726219-35726238 | Msa0116640:CDS | 70.0% | |
| CGCCAAGGCTGACGCCGTCG+AGG | - | chr1_3:35726224-35726243 | None:intergenic | 75.0% | |
| CGCCAAGGCTGACGCCGTCG+AGG | - | chr1_3:35726224-35726243 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 35725958 | 35726782 | 35725958 | ID=Msa0116640;Name=Msa0116640 |
| chr1_3 | mRNA | 35725958 | 35726782 | 35725958 | ID=Msa0116640-mRNA-1;Parent=Msa0116640;Name=Msa0116640-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|274 |
| chr1_3 | exon | 35725958 | 35726782 | 35725958 | ID=Msa0116640-mRNA-1:exon:11556;Parent=Msa0116640-mRNA-1 |
| chr1_3 | CDS | 35725958 | 35726782 | 35725958 | ID=Msa0116640-mRNA-1:cds;Parent=Msa0116640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
