AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072720 MtrunA17_Chr1g0179691 97.720 658 15 0 1 658 1 658 0.0 1322
Msa0072720 MtrunA17_Chr7g0265361 83.748 603 88 2 62 658 50 648 0.0 1043
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072720 AT1G03910.1 75.510 588 139 2 75 658 86 672 0.0 925
Msa0072720 AT1G03910.2 70.095 632 140 3 75 658 86 716 0.0 904
Msa0072720 AT2G36815.2 52.577 97 32 2 282 377 17 100 5.08e-21 89.0
Msa0072720 AT2G36815.1 53.125 96 31 2 283 377 24 106 5.62e-21 89.0

Find 167 sgRNAs with CRISPR-Local

Find 534 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGCTTGCGTAACATTT+TGG 0.170202 1_2:+45767099 None:intergenic
TTCTTGACCCTCTGCTTTAA+TGG 0.192895 1_2:+45766849 Msa0072710:three_prime_UTR
TGCAATACAGGCTTGTTTAA+AGG 0.200086 1_2:-45767131 Msa0072720:intron
AGCTCAGTATTTGGCGAAAA+AGG 0.258558 1_2:-45772036 Msa0072720:CDS
CCCTCTGCTTTAATGGGTTC+GGG 0.271684 1_2:+45766856 Msa0072710:three_prime_UTR
ACCCTCTGCTTTAATGGGTT+CGG 0.272032 1_2:+45766855 Msa0072710:three_prime_UTR
ATCAGAGGGTGAAGATAAAT+TGG 0.274595 1_2:-45767059 Msa0072720:CDS
CGCCAACCCATGTAGAATAT+TGG 0.284425 1_2:-45769072 Msa0072720:CDS
GTTGAAATACTTTGGTTTCC+TGG 0.284593 1_2:+45765597 Msa0072710:three_prime_UTR
TCTTGATGGCTCTGATGATT+TGG 0.289649 1_2:-45770165 Msa0072720:CDS
TGCAGAATTGGAAGCTTTGC+AGG 0.295132 1_2:-45767338 Msa0072720:CDS
TCTTGACCCTCTGCTTTAAT+GGG 0.310995 1_2:+45766850 Msa0072710:three_prime_UTR
CACTCCTTCTGGTGAGTGAT+TGG 0.313594 1_2:-45767507 Msa0072720:CDS
ATGCTATTTGTAGGTTTGTT+TGG 0.327045 1_2:-45771039 Msa0072720:intron
TGTGTCTTGTCTACAAGGTC+TGG 0.329849 1_2:+45765469 Msa0072710:three_prime_UTR
ACGTGCTCGAGCTGAGTTCC+AGG 0.339829 1_2:-45770381 Msa0072720:CDS
AATAGCTCCCATAACCTTCA+TGG 0.340612 1_2:+45766531 Msa0072710:three_prime_UTR
CTTCATGCAGGCACTCCTTC+TGG 0.341193 1_2:-45767518 Msa0072720:intron
GACTTACTTCTCATTAAGAT+TGG 0.354150 1_2:+45771676 None:intergenic
TCATCACCATGAAACAGTTC+TGG 0.358787 1_2:+45766790 Msa0072710:three_prime_UTR
TTATACCCTTGTACAACCTT+TGG 0.359525 1_2:+45765508 Msa0072710:three_prime_UTR
AGAGCAGCAGAGACGAATTC+AGG 0.361317 1_2:-45766605 Msa0072720:CDS
CACCCTCTGATGGTTTCTTA+AGG 0.361872 1_2:+45767071 None:intergenic
TATTTCAACCGTGTTCATAC+TGG 0.366794 1_2:-45765583 Msa0072720:CDS
CTGATGATAGTAGTAGTGAT+AGG 0.370578 1_2:-45772106 Msa0072720:CDS
AAAGTGATCTCTTTGCATAT+TGG 0.373779 1_2:+45766881 None:intergenic
TGCAAAAGCTTCTTCACATC+TGG 0.376117 1_2:+45767373 None:intergenic
CTCTGGTGCAGAAGTAAATC+TGG 0.379600 1_2:-45766485 Msa0072720:CDS
AGAGGAAATAGCTCAGTATT+TGG 0.382147 1_2:-45772045 Msa0072720:CDS
CAGCAAAGCTTGTTGAGTAC+TGG 0.391117 1_2:-45767285 Msa0072720:CDS
GATGAAAGCCATGAAGGTTA+TGG 0.391406 1_2:-45766539 Msa0072720:CDS
GAAGAAGGAGATGTAATGTT+TGG 0.391656 1_2:-45766508 Msa0072720:CDS
TGATGATATCAAAATGCATT+TGG 0.392676 1_2:-45769110 Msa0072720:CDS
GGGGAAGACACATGCAGAAT+TGG 0.400110 1_2:-45767350 Msa0072720:CDS
AGAAAGAAGGAGAAGGAAAT+CGG 0.400976 1_2:-45772261 Msa0072720:CDS
ATCCTTACCAAACATCTTGA+TGG 0.402365 1_2:-45770179 Msa0072720:CDS
TCCGCATTGTAAACAAAGAA+TGG 0.405433 1_2:-45765279 Msa0072720:CDS
TTGAAGGCTCATACTGTGTC+TGG 0.405951 1_2:-45771731 Msa0072720:CDS
GAGCTTGTGTCTTGTCTACA+AGG 0.410873 1_2:+45765464 Msa0072710:three_prime_UTR
GCCAACCCATGTAGAATATT+GGG 0.412226 1_2:-45769071 Msa0072720:CDS
AAATGCATTTGGACTTTGAC+AGG 0.412773 1_2:-45769099 Msa0072720:CDS
ACTCCTTCTGGTGAGTGATT+GGG 0.418323 1_2:-45767506 Msa0072720:CDS
ATCAGAGCCATCAAGATGTT+TGG 0.429860 1_2:+45770172 None:intergenic
TACCCTTGTACAACCTTTGG+AGG 0.431571 1_2:+45765511 Msa0072710:three_prime_UTR
TCAAATGACTCGAATCCATT+TGG 0.433737 1_2:-45771704 Msa0072720:CDS
ATGAAACAGTTCTGGTGAAA+AGG 0.440946 1_2:+45766798 Msa0072710:three_prime_UTR
AAATGTTGGCGCAGGTCTAT+TGG 0.444124 1_2:-45765639 Msa0072720:intron
AGTAGAGCTCTGTCCTCTTC+AGG 0.445180 1_2:+45766748 Msa0072710:intron
CTTCTCAGATTCTTACGCTC+AGG 0.446048 1_2:+45772301 None:intergenic
GAAAGTTGCTAAGAAATTGA+AGG 0.448557 1_2:-45771747 Msa0072720:CDS
TGAAGAGGACAGAGCTCTAC+TGG 0.451227 1_2:-45766746 Msa0072720:intron
TTGAAATACTTTGGTTTCCT+GGG 0.453521 1_2:+45765598 Msa0072710:three_prime_UTR
TGAACACGGTTGAAATACTT+TGG 0.455750 1_2:+45765589 Msa0072710:three_prime_UTR
AGCACGACATGAGGAAGAAA+TGG 0.455954 1_2:-45770601 Msa0072720:intron
ATGAAAGCCATGAAGGTTAT+GGG 0.457579 1_2:-45766538 Msa0072720:CDS
TGAACCATACATGGTCTTCA+AGG 0.457998 1_2:-45770129 Msa0072720:intron
TTAACCTTGAAGACCATGTA+TGG 0.458201 1_2:+45770125 None:intergenic
GTAGTAGTGATAGGGATGGT+AGG 0.460746 1_2:-45772097 Msa0072720:CDS
GAAATCTGAGGAGGATATTG+AGG 0.461280 1_2:-45767020 Msa0072720:CDS
TGTTCAGCAAGCACCTCGGC+TGG 0.461619 1_2:+45767421 None:intergenic
GTGTCTTGTCTACAAGGTCT+GGG 0.462415 1_2:+45765470 Msa0072710:three_prime_UTR
CCGCATTGTAAACAAAGAAT+GGG 0.467266 1_2:-45765278 Msa0072720:CDS
AAAGAGACAGAGAGAAAGGA+TGG 0.468118 1_2:-45770948 Msa0072720:intron
TCTCCGGTGGTGTTGATCAT+TGG 0.468616 1_2:-45772535 None:intergenic
TGGGAATATTCTCACAAGAA+AGG 0.469421 1_2:-45765259 Msa0072720:CDS
GAGACGGAGCCGACATGAAT+CGG 0.472964 1_2:-45772147 Msa0072720:CDS
AATTTATCTTCACCCTCTGA+TGG 0.482921 1_2:+45767061 None:intergenic
CCAACCGTGTTCTCCGCCGC+AGG 0.483061 1_2:-45772494 Msa0072720:intron
CACTATGGTGACCACTCCTC+CGG 0.484550 1_2:+45772186 None:intergenic
ATTGGTGGCATGACAAATAC+AGG 0.484625 1_2:-45765621 Msa0072720:CDS
GTTATGGGAGCTATTGAAGA+AGG 0.486560 1_2:-45766523 Msa0072720:CDS
AGAATCTGAGAAGAATAGAA+TGG 0.487342 1_2:-45772291 Msa0072720:exon
GGATTGCGAAGAAGTTGATT+CGG 0.490066 1_2:+45772226 None:intergenic
GGTAAGGATATCAATTGGCT+TGG 0.490758 1_2:+45770193 None:intergenic
AAATTATCTTCAGATGGAGC+AGG 0.490796 1_2:+45766565 Msa0072710:three_prime_UTR
TGTTTGGTAAGGATATCAAT+TGG 0.493901 1_2:+45770188 None:intergenic
GAATCTGAGAAGAATAGAAT+GGG 0.496092 1_2:-45772290 Msa0072720:exon
AGAACACGGTTGGAGAATTA+CGG 0.501092 1_2:+45772504 None:intergenic
ATTGAGCGTGATGTTGTTCA+AGG 0.501715 1_2:-45771007 Msa0072720:CDS
ATCTCAAAATTATCTTCAGA+TGG 0.502531 1_2:+45766559 Msa0072710:three_prime_UTR
CCTTGTACAACCTTTGGAGG+TGG 0.503514 1_2:+45765514 Msa0072710:three_prime_UTR
CCACCTCCAAAGGTTGTACA+AGG 0.506231 1_2:-45765514 Msa0072720:CDS
TTAAGATTGGAATCACCAAA+TGG 0.507057 1_2:+45771689 None:intergenic
GAAGAAGTAGAAGATGAGGC+TGG 0.507844 1_2:-45766823 Msa0072720:CDS
TCCTTCTCAATAGTGTAAGT+TGG 0.508185 1_2:+45765442 Msa0072710:three_prime_UTR
AGCAAAGCTTGTTGAGTACT+GGG 0.510191 1_2:-45767284 Msa0072720:CDS
AGGTGAAGAAGTAGAAGATG+AGG 0.510258 1_2:-45766827 Msa0072720:CDS
GGGTTTGACAGTGAACGAAA+TGG 0.515774 1_2:-45769143 Msa0072720:CDS
AAGATGCAATTGATCGAGCT+AGG 0.518701 1_2:-45767462 Msa0072720:CDS
CCGATCATTCCGATAGAATC+CGG 0.519720 1_2:-45772205 Msa0072720:CDS
TCGAGCTGAGTTCCAGGACT+GGG 0.522136 1_2:-45770375 Msa0072720:CDS
CCAGAAATTATCTGCGGTAG+CGG 0.525395 1_2:+45765179 Msa0072710:three_prime_UTR
GGCATGACAAATACAGGCCC+AGG 0.525776 1_2:-45765615 Msa0072720:CDS
CTCGAGCTGAGTTCCAGGAC+TGG 0.526610 1_2:-45770376 Msa0072720:CDS
AATGCAGGCGGAAATTGAAA+AGG 0.529839 1_2:-45770658 Msa0072720:intron
ACCACTCCTCCGGATTCTAT+CGG 0.536244 1_2:+45772196 None:intergenic
AGAAGTAAATCTGGATTCAC+AGG 0.541558 1_2:-45766476 Msa0072720:intron
TCTGTGACCGCCGATCACTA+TGG 0.542891 1_2:+45772171 None:intergenic
CTTCGTATGGTGGCCCTGCA+TGG 0.548737 1_2:+45765386 Msa0072710:three_prime_UTR
TGATGATAGTAGTAGTGATA+GGG 0.552104 1_2:-45772105 Msa0072720:CDS
CTCAAGGAAAATTACTGAAG+AGG 0.557543 1_2:-45772063 Msa0072720:CDS
GAATGGGTAGGAAAGAAAGA+AGG 0.558466 1_2:-45772274 Msa0072720:CDS
AGAAATAAATGAACCATACA+TGG 0.559048 1_2:-45770138 Msa0072720:CDS
ATACCTCCCAATATTCTACA+TGG 0.559393 1_2:+45769065 None:intergenic
CCGGATTCTATCGGAATGAT+CGG 0.567648 1_2:+45772205 None:intergenic
TCCCAATATTCTACATGGGT+TGG 0.568443 1_2:+45769070 None:intergenic
AGCCATCAAGATGTTTGGTA+AGG 0.571050 1_2:+45770177 None:intergenic
CCTGCGGCGGAGAACACGGT+TGG 0.575105 1_2:+45772494 None:intergenic
CGAACCTGCGGCGGAGAACA+CGG 0.579053 1_2:+45772490 None:intergenic
ATTAAAGCAGAGGGTCAAGA+AGG 0.580470 1_2:-45766847 Msa0072720:CDS
AGACTTACAATGTCTTCGTA+TGG 0.580822 1_2:+45765373 Msa0072710:intron
ATTGAGAAGGATGGCAGCAA+TGG 0.582219 1_2:-45765430 Msa0072720:CDS
TCAGCAAGCACCTCGGCTGG+AGG 0.583261 1_2:+45767424 None:intergenic
GAAATTATCTGCGGTAGCGG+TGG 0.585724 1_2:+45765182 Msa0072710:three_prime_UTR
CCCGAACCCATTAAAGCAGA+GGG 0.588808 1_2:-45766856 Msa0072720:CDS
ATTGAGTCAGAAATGCGTAC+TGG 0.589102 1_2:-45767310 Msa0072720:CDS
CCCATTCTTTGTTTACAATG+CGG 0.589870 1_2:+45765278 Msa0072710:three_prime_UTR
TCCGATAGAATCCGGAGGAG+TGG 0.590097 1_2:-45772197 Msa0072720:CDS
GGAGATGTAATGTTTGGCTC+TGG 0.590473 1_2:-45766502 Msa0072720:CDS
CTGAGAAGAATAGAATGGGT+AGG 0.591313 1_2:-45772286 Msa0072720:exon
TTACCTTGGCTTTATATATG+CGG 0.592230 1_2:+45767242 None:intergenic
ATCGGCGGTCACAGAGGAGA+CGG 0.593716 1_2:-45772163 Msa0072720:CDS
TCCCGAACCCATTAAAGCAG+AGG 0.593821 1_2:-45766857 Msa0072720:CDS
TGCATCATAAGATTCCATGC+AGG 0.594356 1_2:-45765400 Msa0072720:CDS
ATTGATCGAGCTAGGGTGCG+TGG 0.595446 1_2:-45767454 Msa0072720:CDS
ATATTCTACATGGGTTGGCG+TGG 0.603561 1_2:+45769075 None:intergenic
GTAGGAAAGAAAGAAGGAGA+AGG 0.603835 1_2:-45772268 Msa0072720:CDS
GCATCATAAGATTCCATGCA+GGG 0.604220 1_2:-45765399 Msa0072720:CDS
GATAGTAGTAGTGATAGGGA+TGG 0.605108 1_2:-45772101 Msa0072720:CDS
TGTTGGCGCAGGTCTATTGG+TGG 0.605871 1_2:-45765636 Msa0072720:intron
CTTACAATGTCTTCGTATGG+TGG 0.608002 1_2:+45765376 Msa0072710:intron
AGATGCAATTGATCGAGCTA+GGG 0.609364 1_2:-45767461 Msa0072720:CDS
ACTTACACTATTGAGAAGGA+TGG 0.610559 1_2:-45765439 Msa0072720:CDS
GTTTCATGGTGATGAAAATG+AGG 0.610771 1_2:-45766782 Msa0072720:CDS
TGGAGAAGAACCTCCAGCCG+AGG 0.612324 1_2:-45767434 Msa0072720:CDS
TCATGACAATCCACCTCCAA+AGG 0.613499 1_2:-45765524 Msa0072720:CDS
GAGACGAATTCAGGAAGCAA+TGG 0.614187 1_2:-45766596 Msa0072720:CDS
CCTTGGCTTTATATATGCGG+AGG 0.616946 1_2:+45767245 None:intergenic
AAGAAGTAGAAGATGAGGCT+GGG 0.617278 1_2:-45766822 Msa0072720:CDS
TCCAACTTACACTATTGAGA+AGG 0.618655 1_2:-45765443 Msa0072720:CDS
ACTCCCAATCACTCACCAGA+AGG 0.619083 1_2:+45767503 None:intergenic
CGCCTTAAGAAACCATCAGA+GGG 0.619195 1_2:-45767073 Msa0072720:CDS
GTAGGAAGAGAAAGTCCTCA+AGG 0.620517 1_2:-45772079 Msa0072720:CDS
CCTCCGCATATATAAAGCCA+AGG 0.624228 1_2:-45767245 Msa0072720:intron
AATGCATTTGGACTTTGACA+GGG 0.628278 1_2:-45769098 Msa0072720:CDS
GGAGTGGTCACCATAGTGAT+CGG 0.640226 1_2:-45772181 Msa0072720:CDS
ACTTGAGAAAGCACGACATG+AGG 0.644679 1_2:-45770610 Msa0072720:CDS
GGAAGCTATTGATCCTGAAG+AGG 0.658125 1_2:-45766761 Msa0072720:CDS
TGCTCATGTTATGAAATCTG+AGG 0.658528 1_2:-45767032 Msa0072720:CDS
TTTAAGTGCACATTTGAACG+TGG 0.660103 1_2:-45765235 Msa0072720:CDS
TACCTCCCAATATTCTACAT+GGG 0.662886 1_2:+45769066 None:intergenic
GAGCCGACATGAATCGGACT+CGG 0.665866 1_2:-45772141 Msa0072720:CDS
TCATGTTATGAAATCTGAGG+AGG 0.666704 1_2:-45767029 Msa0072720:CDS
GTGTTCATACTGGATATGAG+TGG 0.672306 1_2:-45765573 Msa0072720:CDS
TATCCGAGTCCGATTCATGT+CGG 0.677662 1_2:+45772138 None:intergenic
ATAGTGATCGGCGGTCACAG+AGG 0.679327 1_2:-45772169 Msa0072720:CDS
AACCCATGTAGAATATTGGG+AGG 0.679555 1_2:-45769068 Msa0072720:intron
ACGCCTTAAGAAACCATCAG+AGG 0.683028 1_2:-45767074 Msa0072720:CDS
TCTGAAATTAGATTGCGTGA+AGG 0.695601 1_2:-45770221 Msa0072720:CDS
CACCTCCAAAGGTTGTACAA+GGG 0.704703 1_2:-45765513 Msa0072720:CDS
GTGGTCACCATAGTGATCGG+CGG 0.706810 1_2:-45772178 Msa0072720:CDS
ATCATTCCGATAGAATCCGG+AGG 0.708307 1_2:-45772202 Msa0072720:CDS
ACTCATATCCAGTATGAACA+CGG 0.712518 1_2:+45765575 Msa0072710:three_prime_UTR
CGGTTGGAGAATTACGGCGA+CGG 0.722765 1_2:+45772510 None:intergenic
GAGGTGCTTGCTGAACAGAG+AGG 0.735663 1_2:-45767415 Msa0072720:CDS
TCTCTGTTCAGCAAGCACCT+CGG 0.736566 1_2:+45767417 None:intergenic
AGAGTGCCAGAAATTATCTG+CGG 0.744813 1_2:+45765173 Msa0072710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTAATGATC+TGG - chr1_2:45765839-45765858 Msa0072720:intron 10.0%
!! TATATGTGTAAATATAAATA+TGG - chr1_2:45766259-45766278 Msa0072720:intron 10.0%
!!! ATAATTAATTTTTTATGACA+TGG + chr1_2:45767708-45767727 None:intergenic 10.0%
!!! ATTAAATAAATCATAGTTTT+CGG + chr1_2:45768307-45768326 None:intergenic 10.0%
!! ATTAAAACTAAATGATTAAA+AGG + chr1_2:45769335-45769354 None:intergenic 10.0%
!!! AAATAGTTTTTTCAATTTAA+TGG + chr1_2:45769403-45769422 None:intergenic 10.0%
!! TAATGTTAATTATTATTAGA+TGG - chr1_2:45771335-45771354 Msa0072720:intron 10.0%
!!! ATGATATATATTGTTATTTT+AGG - chr1_2:45771991-45772010 Msa0072720:intron 10.0%
!!! TGATATATATTGTTATTTTA+GGG - chr1_2:45771992-45772011 Msa0072720:intron 10.0%
!!! TGAAATATTATCGTTATTTT+AGG - chr1_2:45765374-45765393 Msa0072720:intron 15.0%
!! ATCTGAAAATTATATTTCTT+CGG + chr1_2:45766124-45766143 Msa0072710:intron 15.0%
!!! TATAATTTTCAGATATGTAT+TGG - chr1_2:45766130-45766149 Msa0072720:intron 15.0%
!! AAGAAAAACAAGTTAATTAT+TGG - chr1_2:45766290-45766309 Msa0072720:intron 15.0%
!! TAAAACAGAAAAAAATGAAA+AGG + chr1_2:45766513-45766532 Msa0072710:three_prime_UTR 15.0%
!!! TCATTTTTTTCTGTTTTATT+TGG - chr1_2:45766515-45766534 Msa0072720:CDS 15.0%
!!! ATTATGATTTTACAACATTT+TGG - chr1_2:45766847-45766866 Msa0072720:CDS 15.0%
!! TTATTTGATATAACAACAAA+TGG + chr1_2:45767397-45767416 None:intergenic 15.0%
!! TGTTGTTATATCAAATAAAA+TGG - chr1_2:45767399-45767418 Msa0072720:CDS 15.0%
!! TATATCAAATAAAATGGTAT+TGG - chr1_2:45767405-45767424 Msa0072720:CDS 15.0%
!!! GTTAAAAAGTATTAGATAAA+AGG + chr1_2:45767862-45767881 None:intergenic 15.0%
!!! ATAATTTGTTCATACAATAT+TGG - chr1_2:45767938-45767957 Msa0072720:intron 15.0%
!!! TAATTTGTTCATACAATATT+GGG - chr1_2:45767939-45767958 Msa0072720:intron 15.0%
!! GATTTATTTAATAAATGACA+TGG - chr1_2:45768315-45768334 Msa0072720:intron 15.0%
!! TTATAATTTACAACAGTTAA+AGG + chr1_2:45768423-45768442 None:intergenic 15.0%
!! ACATAATGATTTGATATTTA+TGG - chr1_2:45768538-45768557 Msa0072720:intron 15.0%
!! ATACTTCAATAGTAAAATTA+TGG - chr1_2:45768698-45768717 Msa0072720:intron 15.0%
!!! AATTTTAAATACTTTGTATG+AGG + chr1_2:45769438-45769457 None:intergenic 15.0%
!!! TCATACAAAGTATTTAAAAT+TGG - chr1_2:45769437-45769456 Msa0072720:intron 15.0%
!!! ATTTGTAAAATATTGACTTT+TGG - chr1_2:45770750-45770769 Msa0072720:intron 15.0%
!!! ATTTTGGAATACTATTATAA+AGG - chr1_2:45771869-45771888 Msa0072720:intron 15.0%
!! AATACATGAAATAAGTAATT+TGG + chr1_2:45772399-45772418 None:intergenic 15.0%
!!! TTTTTTTTTTAATGATCTGG+AGG - chr1_2:45765842-45765861 Msa0072720:intron 20.0%
!!! ATGAATTGAATTGGTTTAAA+GGG - chr1_2:45765894-45765913 Msa0072720:intron 20.0%
!! TCTGAAAATTATATTTCTTC+GGG + chr1_2:45766123-45766142 Msa0072710:intron 20.0%
!!! TCAAAGAAACTTTATTTTTG+TGG - chr1_2:45766190-45766209 Msa0072720:intron 20.0%
!!! AGGTTATACAATTTTTTTCT+TGG + chr1_2:45766372-45766391 Msa0072710:intron 20.0%
!! AGAAAAAAATTGTATAACCT+TGG - chr1_2:45766372-45766391 Msa0072720:intron 20.0%
!!! AACTTTTAGTTTTTTTCGTT+TGG - chr1_2:45766438-45766457 Msa0072720:intron 20.0%
!! TTAACTGAAAAATCATCAAT+AGG + chr1_2:45766731-45766750 Msa0072710:intron 20.0%
!!! TTTTCTCCAAAAAATGTTTT+TGG - chr1_2:45766790-45766809 Msa0072720:CDS 20.0%
!!! TAACATCCAAAAACATTTTT+TGG + chr1_2:45766799-45766818 Msa0072710:three_prime_UTR 20.0%
!!! AAAAAATGTTTTTGGATGTT+AGG - chr1_2:45766798-45766817 Msa0072720:CDS 20.0%
!!! AAAAATGTTTTTGGATGTTA+GGG - chr1_2:45766799-45766818 Msa0072720:CDS 20.0%
!! TTAACAAGAAATTAGTCAAA+TGG + chr1_2:45767024-45767043 None:intergenic 20.0%
!! TCTTGTTAAAATTATAATGC+AGG - chr1_2:45767035-45767054 Msa0072720:CDS 20.0%
!! CCAATAATAAGTTATAAGAA+TGG + chr1_2:45767142-45767161 None:intergenic 20.0%
!! CCATTCTTATAACTTATTAT+TGG - chr1_2:45767139-45767158 Msa0072720:intron 20.0%
!! GTTCTTTATTCTCATAATAT+TGG + chr1_2:45767626-45767645 None:intergenic 20.0%
!! GCAAAATTATGAAATTAGAT+TGG - chr1_2:45768337-45768356 Msa0072720:intron 20.0%
!! GAAATTGTCTAAAAATTAAG+AGG - chr1_2:45768720-45768739 Msa0072720:intron 20.0%
!! TATATATTGTTGTATACTCT+TGG - chr1_2:45768763-45768782 Msa0072720:intron 20.0%
!!! TTTTTCTTTGTTGAATAAAC+CGG + chr1_2:45769080-45769099 None:intergenic 20.0%
!!! AGTTTTGAATTTAAACACTT+TGG - chr1_2:45769290-45769309 Msa0072720:intron 20.0%
!!! GTTTTGAATTTAAACACTTT+GGG - chr1_2:45769291-45769310 Msa0072720:intron 20.0%
!!! ATTCCTTTTTTTATTTGATG+CGG - chr1_2:45769478-45769497 Msa0072720:intron 20.0%
!!! GATTTTCATTGATTTTGAAA+AGG - chr1_2:45769553-45769572 Msa0072720:intron 20.0%
!! AACTGATAAATCTTTAGTTA+CGG + chr1_2:45769702-45769721 None:intergenic 20.0%
!! AAAGATTTATCAGTTTATCT+TGG - chr1_2:45769707-45769726 Msa0072720:intron 20.0%
!! TTTGTTTCAGTTAACTTATA+TGG - chr1_2:45770066-45770085 Msa0072720:intron 20.0%
!! TAACATTAAAACTAGAATCA+TGG + chr1_2:45771323-45771342 None:intergenic 20.0%
!! GTTCAGAAAAAAAATTAGTT+AGG - chr1_2:45771830-45771849 Msa0072720:intron 20.0%
!!! AAAACTTTCAGATTTTAAGT+CGG + chr1_2:45771908-45771927 None:intergenic 20.0%
!!! TAATTTTGATATACTGTCGA+TGG - chr1_2:45765735-45765754 Msa0072720:intron 25.0%
!! TGTGTTTTCATGAATTGAAT+TGG - chr1_2:45765885-45765904 Msa0072720:intron 25.0%
!! CATGAATTGAATTGGTTTAA+AGG - chr1_2:45765893-45765912 Msa0072720:intron 25.0%
! TTTGATGTTGAATTGTTCTT+TGG - chr1_2:45765921-45765940 Msa0072720:intron 25.0%
! CACAAGACAGAAAAAAATTA+GGG + chr1_2:45766068-45766087 Msa0072710:intron 25.0%
! ACACAAGACAGAAAAAAATT+AGG + chr1_2:45766069-45766088 Msa0072710:intron 25.0%
!!! AAACTTTATTTTTGTGGAGA+GGG - chr1_2:45766196-45766215 Msa0072720:intron 25.0%
! GTTGCTGAATAAGTTTATTT+CGG - chr1_2:45766335-45766354 Msa0072720:intron 25.0%
!!! TTTTAGTTTTTTTCGTTTGG+AGG - chr1_2:45766441-45766460 Msa0072720:intron 25.0%
!!! TTTAGTTTTTTTCGTTTGGA+GGG - chr1_2:45766442-45766461 Msa0072720:intron 25.0%
!!! ACATTGTTATTTTCTAGAAG+CGG - chr1_2:45766563-45766582 Msa0072720:CDS 25.0%
! AAATTAGTCAAATGGTAGAT+GGG + chr1_2:45767016-45767035 None:intergenic 25.0%
! TGTTAAAATTATAATGCAGG+CGG - chr1_2:45767038-45767057 Msa0072720:CDS 25.0%
! AAAAAATAGTTTATGCACCA+AGG + chr1_2:45767257-45767276 None:intergenic 25.0%
!!! ATTTTGATCAAAGCAAGTTT+AGG - chr1_2:45767464-45767483 Msa0072720:CDS 25.0%
! AGAAATAAATGAACCATACA+TGG - chr1_2:45767570-45767589 Msa0072720:intron 25.0%
! TTAGATAAAAGGATATTGCA+TGG + chr1_2:45767851-45767870 None:intergenic 25.0%
! AAATTAGAAACTCATGCAAA+AGG + chr1_2:45767915-45767934 None:intergenic 25.0%
! GAAAAGAAACATGAGTTTAA+AGG + chr1_2:45768401-45768420 None:intergenic 25.0%
! ATTTAGTCATGCTAATGAAA+GGG + chr1_2:45768481-45768500 None:intergenic 25.0%
! TATTTAGTCATGCTAATGAA+AGG + chr1_2:45768482-45768501 None:intergenic 25.0%
!!! CTAGTTTTAAACGTCAATAT+TGG - chr1_2:45768505-45768524 Msa0072720:intron 25.0%
!!! AATGCATTTTGATATCATCA+CGG + chr1_2:45768598-45768617 None:intergenic 25.0%
! TGATGATATCAAAATGCATT+TGG - chr1_2:45768598-45768617 Msa0072720:intron 25.0%
! ACTATAGATTAGAGCAAATA+AGG + chr1_2:45768852-45768871 None:intergenic 25.0%
!! ATACAGTGGTTTTCTTTAAA+AGG - chr1_2:45769577-45769596 Msa0072720:intron 25.0%
! ACTGATAAATCTTTAGTTAC+GGG + chr1_2:45769701-45769720 None:intergenic 25.0%
!!! TATCAGTTTATCTTGGTTTT+AGG - chr1_2:45769714-45769733 Msa0072720:intron 25.0%
! TAAACAGCAAATAAGAAGTA+TGG - chr1_2:45769877-45769896 Msa0072720:intron 25.0%
! AAGAAGACAACTAATTGATT+GGG + chr1_2:45770033-45770052 None:intergenic 25.0%
! TAAGAAGACAACTAATTGAT+TGG + chr1_2:45770034-45770053 None:intergenic 25.0%
! TAAGTTAACTGAAACAAAAG+AGG + chr1_2:45770064-45770083 None:intergenic 25.0%
! ATGCATAACATTACATGTTA+AGG + chr1_2:45770108-45770127 None:intergenic 25.0%
! GTCATTTCATAATTCATGTT+CGG - chr1_2:45770143-45770162 Msa0072720:CDS 25.0%
!!! CAAAATGAAGTTTTGGATAT+AGG + chr1_2:45770782-45770801 None:intergenic 25.0%
!! GGAAAATCAAAATGAAGTTT+TGG + chr1_2:45770789-45770808 None:intergenic 25.0%
! TGAGTTTGTGTTAAGTATAT+AGG - chr1_2:45771025-45771044 Msa0072720:CDS 25.0%
! ATCTCAAAATTATCTTCAGA+TGG + chr1_2:45771152-45771171 None:intergenic 25.0%
!! ATTTGTATGATTTTCACACT+TGG - chr1_2:45771269-45771288 Msa0072720:intron 25.0%
!! ATTTTCACACTTGGTAAAAT+GGG - chr1_2:45771278-45771297 Msa0072720:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1_2:45771444-45771463 Msa0072720:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr1_2:45771484-45771503 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr1_2:45771626-45771645 None:intergenic 25.0%
! TTGGAATACTATTATAAAGG+AGG - chr1_2:45771872-45771891 Msa0072720:intron 25.0%
! AATACTATTATAAAGGAGGT+GGG - chr1_2:45771876-45771895 Msa0072720:intron 25.0%
! CTTATGTAAGTGATAAATGT+TGG - chr1_2:45772055-45772074 Msa0072720:CDS 25.0%
! ACTTATTTCATGTATTTGAC+AGG - chr1_2:45772403-45772422 Msa0072720:intron 25.0%
AAATTCGAAGTGAAAATCGA+CGG + chr1_2:45765252-45765271 Msa0072710:three_prime_UTR 30.0%
AGAATCTGAGAAGAATAGAA+TGG - chr1_2:45765417-45765436 Msa0072720:CDS 30.0%
GAATCTGAGAAGAATAGAAT+GGG - chr1_2:45765418-45765437 Msa0072720:CDS 30.0%
TGATGATAGTAGTAGTGATA+GGG - chr1_2:45765603-45765622 Msa0072720:CDS 30.0%
! TGGAAAAGTTTTTACGTTGT+CGG - chr1_2:45765755-45765774 Msa0072720:intron 30.0%
GAAAGTTGCTAAGAAATTGA+AGG - chr1_2:45765961-45765980 Msa0072720:intron 30.0%
TTAAGATTGGAATCACCAAA+TGG + chr1_2:45766022-45766041 Msa0072710:intron 30.0%
GACTTACTTCTCATTAAGAT+TGG + chr1_2:45766035-45766054 Msa0072710:intron 30.0%
AAAAAATTAGGGAGAAGAGA+GGG + chr1_2:45766057-45766076 Msa0072710:intron 30.0%
AAAAAAATTAGGGAGAAGAG+AGG + chr1_2:45766058-45766077 Msa0072710:intron 30.0%
!!! GAAACTTTATTTTTGTGGAG+AGG - chr1_2:45766195-45766214 Msa0072720:intron 30.0%
AATGATTAATACTCGTTCCA+AGG + chr1_2:45766392-45766411 Msa0072710:intron 30.0%
ATCATTGAAGTTCTTGATGT+TGG - chr1_2:45766406-45766425 Msa0072720:intron 30.0%
CAATAAATTTGCAAGCTTAG+CGG + chr1_2:45766543-45766562 Msa0072710:three_prime_UTR 30.0%
GTTCGTAAATAAGATGATGA+AGG + chr1_2:45766649-45766668 Msa0072710:intron 30.0%
! TTTACGAACATGCTATTTGT+AGG - chr1_2:45766660-45766679 Msa0072720:intron 30.0%
! ATGCTATTTGTAGGTTTGTT+TGG - chr1_2:45766669-45766688 Msa0072720:intron 30.0%
ACAAAACAACTAGTTAGTAG+TGG + chr1_2:45766887-45766906 None:intergenic 30.0%
!! CTACTAACTAGTTGTTTTGT+TGG - chr1_2:45766887-45766906 Msa0072720:intron 30.0%
ATCATCATAATCAATAACCC+GGG + chr1_2:45766968-45766987 None:intergenic 30.0%
CATCATCATAATCAATAACC+CGG + chr1_2:45766969-45766988 None:intergenic 30.0%
GAAATTAGTCAAATGGTAGA+TGG + chr1_2:45767017-45767036 None:intergenic 30.0%
TTATACAAATTGTCTCTCAC+AGG - chr1_2:45767288-45767307 Msa0072720:CDS 30.0%
TGTTTGGTAAGGATATCAAT+TGG + chr1_2:45767523-45767542 None:intergenic 30.0%
TGGTCTTCAAGGTTAATATT+TGG - chr1_2:45767590-45767609 Msa0072720:intron 30.0%
GCTAAAAGATGCAATTTGAT+TGG + chr1_2:45767686-45767705 None:intergenic 30.0%
TCTGAGTAGAAAAGTTGAAA+TGG + chr1_2:45767772-45767791 None:intergenic 30.0%
CTTTCTATCTTTAACTCACT+CGG + chr1_2:45768234-45768253 None:intergenic 30.0%
!! GTTTTAAACGTCAATATTGG+TGG - chr1_2:45768508-45768527 Msa0072720:intron 30.0%
TGATTTGATATTTATGGTGC+AGG - chr1_2:45768544-45768563 Msa0072720:intron 30.0%
GATTTGATATTTATGGTGCA+GGG - chr1_2:45768545-45768564 Msa0072720:intron 30.0%
TGTTGTATACTCTTGGAATT+TGG - chr1_2:45768770-45768789 Msa0072720:intron 30.0%
GTTGTATACTCTTGGAATTT+GGG - chr1_2:45768771-45768790 Msa0072720:intron 30.0%
! TAATCTATAGTTGATGTCTC+AGG - chr1_2:45768861-45768880 Msa0072720:intron 30.0%
ATCTAATACATGGAGTAATG+TGG - chr1_2:45768891-45768910 Msa0072720:intron 30.0%
TCTAATACATGGAGTAATGT+GGG - chr1_2:45768892-45768911 Msa0072720:intron 30.0%
ACATGGTATAACTAAGATTG+AGG - chr1_2:45768972-45768991 Msa0072720:intron 30.0%
!! TAGATCACAGGTTTGTTATT+GGG + chr1_2:45768998-45769017 None:intergenic 30.0%
! CTAAAGCTCTAATTCTAAGA+TGG + chr1_2:45769036-45769055 None:intergenic 30.0%
CATCTTAGAATTAGAGCTTT+AGG - chr1_2:45769034-45769053 Msa0072720:intron 30.0%
AAAGAAAAACCTCACAAAAC+TGG - chr1_2:45769091-45769110 Msa0072720:CDS 30.0%
ATGCATAGATGATATTGTAC+TGG + chr1_2:45769371-45769390 None:intergenic 30.0%
ACACCGCATCAAATAAAAAA+AGG + chr1_2:45769484-45769503 None:intergenic 30.0%
GAAGACTAATGTAGTGATAT+TGG - chr1_2:45769507-45769526 Msa0072720:intron 30.0%
GTGATATTGGAGAAATCAAA+AGG - chr1_2:45769520-45769539 Msa0072720:intron 30.0%
TTAATGGTACGAAACCATAT+GGG - chr1_2:45769660-45769679 Msa0072720:intron 30.0%
! TGAGTAAAAAGCATGAACAA+TGG + chr1_2:45769791-45769810 None:intergenic 30.0%
TTAACTTATATGGCCATTGT+GGG - chr1_2:45770076-45770095 Msa0072720:intron 30.0%
ACATGTAATGTTATGCATCT+TGG - chr1_2:45770110-45770129 Msa0072720:intron 30.0%
!! TTACCTTGGCTTTATATATG+CGG + chr1_2:45770469-45770488 None:intergenic 30.0%
TAATGTTAGAGAGATTACCT+TGG + chr1_2:45770483-45770502 None:intergenic 30.0%
TGTTACATGCCATAACTTAA+TGG - chr1_2:45770533-45770552 Msa0072720:intron 30.0%
AAAGTGATCTCTTTGCATAT+TGG + chr1_2:45770830-45770849 None:intergenic 30.0%
! GATTTTCACACTTGGTAAAA+TGG - chr1_2:45771277-45771296 Msa0072720:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr1_2:45771440-45771459 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr1_2:45771479-45771498 Msa0072720:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG - chr1_2:45771491-45771510 Msa0072720:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr1_2:45771559-45771578 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr1_2:45771560-45771579 Msa0072720:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr1_2:45771630-45771649 Msa0072720:intron 30.0%
! TATTTTCCATGTAGTATGAC+CGG + chr1_2:45771806-45771825 None:intergenic 30.0%
! AGTACAAAGTTCAGAGATTT+TGG - chr1_2:45771853-45771872 Msa0072720:intron 30.0%
GAATACTATTATAAAGGAGG+TGG - chr1_2:45771875-45771894 Msa0072720:intron 30.0%
ATACTATTATAAAGGAGGTG+GGG - chr1_2:45771877-45771896 Msa0072720:intron 30.0%
! TTGAAATACTTTGGTTTCCT+GGG + chr1_2:45772113-45772132 None:intergenic 30.0%
TGTAAGTCTATTGTTCATGA+TGG - chr1_2:45772349-45772368 Msa0072720:intron 30.0%
AGACTAGATAGTATTTGCGA+TGG + chr1_2:45765314-45765333 Msa0072710:intron 35.0%
TCGCAAATACTATCTAGTCT+AGG - chr1_2:45765314-45765333 Msa0072720:intron 35.0%
CGCAAATACTATCTAGTCTA+GGG - chr1_2:45765315-45765334 Msa0072720:intron 35.0%
AGAAAGAAGGAGAAGGAAAT+CGG - chr1_2:45765447-45765466 Msa0072720:CDS 35.0%
CTGATGATAGTAGTAGTGAT+AGG - chr1_2:45765602-45765621 Msa0072720:CDS 35.0%
! CTCTTCAGTAATTTTCCTTG+AGG + chr1_2:45765647-45765666 Msa0072710:intron 35.0%
CTCAAGGAAAATTACTGAAG+AGG - chr1_2:45765645-45765664 Msa0072720:intron 35.0%
AGAGGAAATAGCTCAGTATT+TGG - chr1_2:45765663-45765682 Msa0072720:intron 35.0%
!!! TGTTCTTTGGTTTTGTGTTC+AGG - chr1_2:45765934-45765953 Msa0072720:intron 35.0%
TCAAATGACTCGAATCCATT+TGG - chr1_2:45766004-45766023 Msa0072720:intron 35.0%
TTATTCAGCAACCAGCAATA+GGG + chr1_2:45766327-45766346 Msa0072710:intron 35.0%
GCTGAATAAGTTTATTTCGG+TGG - chr1_2:45766338-45766357 Msa0072720:intron 35.0%
AGAAAAAGAGACAGAGAGAA+AGG - chr1_2:45766756-45766775 Msa0072720:CDS 35.0%
TCATCATAATCAATAACCCG+GGG + chr1_2:45766967-45766986 None:intergenic 35.0%
TGAAAAAACGAAGAGAAGAG+AGG - chr1_2:45767073-45767092 Msa0072720:CDS 35.0%
GAAAAAACGAAGAGAAGAGA+GGG - chr1_2:45767074-45767093 Msa0072720:CDS 35.0%
TAGAAGCGAAATTACGTTCT+GGG - chr1_2:45767177-45767196 Msa0072720:intron 35.0%
TAAAAGAATATAGCCGAGAC+AGG + chr1_2:45767212-45767231 None:intergenic 35.0%
TAGTTTATGCACCAAGGTTT+GGG + chr1_2:45767251-45767270 None:intergenic 35.0%
ATAGTTTATGCACCAAGGTT+TGG + chr1_2:45767252-45767271 None:intergenic 35.0%
AAAAAAGAGAAGTGGAGGTA+TGG - chr1_2:45767356-45767375 Msa0072720:CDS 35.0%
! TCTGAAATTAGATTGCGTGA+AGG - chr1_2:45767487-45767506 Msa0072720:CDS 35.0%
ATCCTTACCAAACATCTTGA+TGG - chr1_2:45767529-45767548 Msa0072720:intron 35.0%
TTAACCTTGAAGACCATGTA+TGG + chr1_2:45767586-45767605 None:intergenic 35.0%
!! TTGGATGACACTCTAAAGTT+AGG + chr1_2:45767667-45767686 None:intergenic 35.0%
! CAACTTTTCTACTCAGATCA+TGG - chr1_2:45767775-45767794 Msa0072720:intron 35.0%
!!! GTGAATGCATCTACTTTTTC+TGG - chr1_2:45767961-45767980 Msa0072720:intron 35.0%
TTCATGGTTGTTGATGTTAG+AGG + chr1_2:45768001-45768020 None:intergenic 35.0%
TCTAACATCAACAACCATGA+AGG - chr1_2:45768000-45768019 Msa0072720:intron 35.0%
TTGGAAAGCAGTGAAGAAAA+CGG + chr1_2:45768198-45768217 None:intergenic 35.0%
! TCAATCTGGTTTGTATAGAG+AGG - chr1_2:45768270-45768289 Msa0072720:intron 35.0%
! CAATCTGGTTTGTATAGAGA+GGG - chr1_2:45768271-45768290 Msa0072720:intron 35.0%
! AATCTGGTTTGTATAGAGAG+GGG - chr1_2:45768272-45768291 Msa0072720:intron 35.0%
AAATGCATTTGGACTTTGAC+AGG - chr1_2:45768609-45768628 Msa0072720:intron 35.0%
AATGCATTTGGACTTTGACA+GGG - chr1_2:45768610-45768629 Msa0072720:intron 35.0%
TACCTCCCAATATTCTACAT+GGG + chr1_2:45768645-45768664 None:intergenic 35.0%
ATACCTCCCAATATTCTACA+TGG + chr1_2:45768646-45768665 None:intergenic 35.0%
ACTAAACAAGCCATGGAAAA+AGG + chr1_2:45768672-45768691 None:intergenic 35.0%
TGATGTAACTAAACAAGCCA+TGG + chr1_2:45768679-45768698 None:intergenic 35.0%
!!! TGGTTTTGTAGGGTTGAATT+AGG + chr1_2:45768804-45768823 None:intergenic 35.0%
!!! CCTTAGAAGTTGGTTTTGTA+GGG + chr1_2:45768814-45768833 None:intergenic 35.0%
!!! ACCTTAGAAGTTGGTTTTGT+AGG + chr1_2:45768815-45768834 None:intergenic 35.0%
!! CTAGATCACAGGTTTGTTAT+TGG + chr1_2:45768999-45769018 None:intergenic 35.0%
CAATAACAAACCTGTGATCT+AGG - chr1_2:45768997-45769016 Msa0072720:intron 35.0%
! AAACACTTTGGGAATAGCAT+TGG - chr1_2:45769302-45769321 Msa0072720:intron 35.0%
!! GATTTTGAAAAGGCATACAG+TGG - chr1_2:45769563-45769582 Msa0072720:intron 35.0%
!! AGTACTCTGAGATATATGTG+AGG - chr1_2:45769628-45769647 Msa0072720:intron 35.0%
!! GTACTCTGAGATATATGTGA+GGG - chr1_2:45769629-45769648 Msa0072720:intron 35.0%
!! TACTCTGAGATATATGTGAG+GGG - chr1_2:45769630-45769649 Msa0072720:intron 35.0%
GTTAATGGTACGAAACCATA+TGG - chr1_2:45769659-45769678 Msa0072720:intron 35.0%
TAATGGTACGAAACCATATG+GGG - chr1_2:45769661-45769680 Msa0072720:intron 35.0%
! AAATCTTTTGTAGCCCCATA+TGG + chr1_2:45769677-45769696 None:intergenic 35.0%
AACCAGGATAAAACGATAAG+CGG + chr1_2:45769747-45769766 None:intergenic 35.0%
ACATTCAACCCTATATAGCA+TGG + chr1_2:45769850-45769869 None:intergenic 35.0%
TGCTATATAGGGTTGAATGT+TGG - chr1_2:45769850-45769869 Msa0072720:intron 35.0%
GCTATATAGGGTTGAATGTT+GGG - chr1_2:45769851-45769870 Msa0072720:intron 35.0%
! AAGAAGTATGGTCAATGTTG+TGG - chr1_2:45769889-45769908 Msa0072720:intron 35.0%
GTTAACTTATATGGCCATTG+TGG - chr1_2:45770075-45770094 Msa0072720:intron 35.0%
GCGAACAATCCATTAAGTTA+TGG + chr1_2:45770545-45770564 None:intergenic 35.0%
! TCCATTATTTGCTGCAATAC+AGG - chr1_2:45770565-45770584 Msa0072720:intron 35.0%
! TGCAATACAGGCTTGTTTAA+AGG - chr1_2:45770577-45770596 Msa0072720:intron 35.0%
! CAAATGCTTGCGTAACATTT+TGG + chr1_2:45770612-45770631 None:intergenic 35.0%
AATTTATCTTCACCCTCTGA+TGG + chr1_2:45770650-45770669 None:intergenic 35.0%
ATCAGAGGGTGAAGATAAAT+TGG - chr1_2:45770649-45770668 Msa0072720:CDS 35.0%
TGCTCATGTTATGAAATCTG+AGG - chr1_2:45770676-45770695 Msa0072720:intron 35.0%
TCATGTTATGAAATCTGAGG+AGG - chr1_2:45770679-45770698 Msa0072720:intron 35.0%
TGGACTGCACAAAAAATATC+AGG + chr1_2:45770810-45770829 None:intergenic 35.0%
! ATGAAACAGTTCTGGTGAAA+AGG + chr1_2:45770913-45770932 None:intergenic 35.0%
! TTTTCACCAGAACTGTTTCA+TGG - chr1_2:45770912-45770931 Msa0072720:intron 35.0%
! GTTTCATGGTGATGAAAATG+AGG - chr1_2:45770926-45770945 Msa0072720:intron 35.0%
AAATTATCTTCAGATGGAGC+AGG + chr1_2:45771146-45771165 None:intergenic 35.0%
!!! TTTTGAGATGAAAGCCATGA+AGG - chr1_2:45771163-45771182 Msa0072720:intron 35.0%
ATGAAAGCCATGAAGGTTAT+GGG - chr1_2:45771170-45771189 Msa0072720:intron 35.0%
GAAGAAGGAGATGTAATGTT+TGG - chr1_2:45771200-45771219 Msa0072720:intron 35.0%
AGAAGTAAATCTGGATTCAC+AGG - chr1_2:45771232-45771251 Msa0072720:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_2:45771460-45771479 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_2:45771472-45771491 None:intergenic 35.0%
! GTTTCTCGAATGGTTTTCTT+GGG - chr1_2:45771501-45771520 Msa0072720:intron 35.0%
AAGAAGAGTAGATCAAATGG+CGG + chr1_2:45771556-45771575 None:intergenic 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_2:45771612-45771631 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_2:45771617-45771636 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_2:45771637-45771656 None:intergenic 35.0%
AGACTAGACAAGATAGGATT+AGG + chr1_2:45771687-45771706 None:intergenic 35.0%
TACTATTATAAAGGAGGTGG+GGG - chr1_2:45771878-45771897 Msa0072720:intron 35.0%
! GTTGAAATACTTTGGTTTCC+TGG + chr1_2:45772114-45772133 None:intergenic 35.0%
TGAACACGGTTGAAATACTT+TGG + chr1_2:45772122-45772141 None:intergenic 35.0%
TATTTCAACCGTGTTCATAC+TGG - chr1_2:45772125-45772144 Msa0072720:CDS 35.0%
ACTCATATCCAGTATGAACA+CGG + chr1_2:45772136-45772155 None:intergenic 35.0%
TTATACCCTTGTACAACCTT+TGG + chr1_2:45772203-45772222 None:intergenic 35.0%
TCCAACTTACACTATTGAGA+AGG - chr1_2:45772265-45772284 Msa0072720:CDS 35.0%
TCCTTCTCAATAGTGTAAGT+TGG + chr1_2:45772269-45772288 None:intergenic 35.0%
ACTTACACTATTGAGAAGGA+TGG - chr1_2:45772269-45772288 Msa0072720:CDS 35.0%
AGACTTACAATGTCTTCGTA+TGG + chr1_2:45772338-45772357 None:intergenic 35.0%
TCCGCATTGTAAACAAAGAA+TGG - chr1_2:45772429-45772448 Msa0072720:intron 35.0%
! CCCATTCTTTGTTTACAATG+CGG + chr1_2:45772433-45772452 None:intergenic 35.0%
CCGCATTGTAAACAAAGAAT+GGG - chr1_2:45772430-45772449 Msa0072720:intron 35.0%
TGGGAATATTCTCACAAGAA+AGG - chr1_2:45772449-45772468 Msa0072720:intron 35.0%
TTTAAGTGCACATTTGAACG+TGG - chr1_2:45772473-45772492 Msa0072720:intron 35.0%
AGAACACGGTTGGAGAATTA+CGG + chr1_2:45765207-45765226 Msa0072710:three_prime_UTR 40.0%
ACGGAAAAATAACGAACCTG+CGG + chr1_2:45765233-45765252 Msa0072710:three_prime_UTR 40.0%
CTGAGAAGAATAGAATGGGT+AGG - chr1_2:45765422-45765441 Msa0072720:CDS 40.0%
GAATGGGTAGGAAAGAAAGA+AGG - chr1_2:45765434-45765453 Msa0072720:CDS 40.0%
GTAGGAAAGAAAGAAGGAGA+AGG - chr1_2:45765440-45765459 Msa0072720:CDS 40.0%
! GGATTGCGAAGAAGTTGATT+CGG + chr1_2:45765485-45765504 Msa0072710:three_prime_UTR 40.0%
GATAGTAGTAGTGATAGGGA+TGG - chr1_2:45765607-45765626 Msa0072720:CDS 40.0%
AGCTCAGTATTTGGCGAAAA+AGG - chr1_2:45765672-45765691 Msa0072720:intron 40.0%
ATGCATGCATACTGCATATG+AGG + chr1_2:45766158-45766177 Msa0072710:intron 40.0%
!! TATTTTTGTGGAGAGGGTAG+TGG - chr1_2:45766202-45766221 Msa0072720:intron 40.0%
CTTATTCAGCAACCAGCAAT+AGG + chr1_2:45766328-45766347 Msa0072710:intron 40.0%
!!! AGTTTTTTTCGTTTGGAGGG+TGG - chr1_2:45766445-45766464 Msa0072720:intron 40.0%
!!! GTTTTTTTCGTTTGGAGGGT+GGG - chr1_2:45766446-45766465 Msa0072720:intron 40.0%
ATTGAGCGTGATGTTGTTCA+AGG - chr1_2:45766701-45766720 Msa0072720:intron 40.0%
AAAGAGACAGAGAGAAAGGA+TGG - chr1_2:45766760-45766779 Msa0072720:CDS 40.0%
ACTAGTTAGTAGTGGCAAGT+TGG + chr1_2:45766879-45766898 None:intergenic 40.0%
CATCATAATCAATAACCCGG+GGG + chr1_2:45766966-45766985 None:intergenic 40.0%
AATGCAGGCGGAAATTGAAA+AGG - chr1_2:45767050-45767069 Msa0072720:CDS 40.0%
CTAGAAGCGAAATTACGTTC+TGG - chr1_2:45767176-45767195 Msa0072720:intron 40.0%
GGTAAGGATATCAATTGGCT+TGG + chr1_2:45767518-45767537 None:intergenic 40.0%
AGCCATCAAGATGTTTGGTA+AGG + chr1_2:45767534-45767553 None:intergenic 40.0%
ATCAGAGCCATCAAGATGTT+TGG + chr1_2:45767539-45767558 None:intergenic 40.0%
!! TCTTGATGGCTCTGATGATT+TGG - chr1_2:45767543-45767562 Msa0072720:intron 40.0%
TGAACCATACATGGTCTTCA+AGG - chr1_2:45767579-45767598 Msa0072720:intron 40.0%
AGGATATTGCATGGAGAAGA+TGG + chr1_2:45767842-45767861 None:intergenic 40.0%
!! TGTGGATTTTGGTGCAATGA+AGG + chr1_2:45768069-45768088 None:intergenic 40.0%
AGTGACAGAAATTGTGGTCA+TGG + chr1_2:45768096-45768115 None:intergenic 40.0%
TGGAAAGCAGTGAAGAAAAC+GGG + chr1_2:45768197-45768216 None:intergenic 40.0%
AGATAGAAAGTTGCAGCAGA+TGG - chr1_2:45768244-45768263 Msa0072720:intron 40.0%
! ATCTGGTTTGTATAGAGAGG+GGG - chr1_2:45768273-45768292 Msa0072720:intron 40.0%
GCCAACCCATGTAGAATATT+GGG - chr1_2:45768637-45768656 Msa0072720:intron 40.0%
TCCCAATATTCTACATGGGT+TGG + chr1_2:45768641-45768660 None:intergenic 40.0%
AACCCATGTAGAATATTGGG+AGG - chr1_2:45768640-45768659 Msa0072720:intron 40.0%
!! GAGGTATCTTCCTTTTTCCA+TGG - chr1_2:45768659-45768678 Msa0072720:intron 40.0%
CCCTACAAAACCAACTTCTA+AGG - chr1_2:45768811-45768830 Msa0072720:intron 40.0%
!! CAAAACCAACTTCTAAGGTG+AGG - chr1_2:45768816-45768835 Msa0072720:intron 40.0%
! TCTATAGTTGATGTCTCAGG+TGG - chr1_2:45768864-45768883 Msa0072720:intron 40.0%
! CTATAGTTGATGTCTCAGGT+GGG - chr1_2:45768865-45768884 Msa0072720:intron 40.0%
AGGTGGGAACATCTAATACA+TGG - chr1_2:45768881-45768900 Msa0072720:intron 40.0%
AATACATGGAGTAATGTGGG+TGG - chr1_2:45768895-45768914 Msa0072720:intron 40.0%
AGTAATGTGGGTGGAATACA+TGG - chr1_2:45768904-45768923 Msa0072720:intron 40.0%
ATAGCGTGAACATTTGCACA+TGG - chr1_2:45768955-45768974 Msa0072720:intron 40.0%
AACAAACCTGTGATCTAGGA+TGG - chr1_2:45769001-45769020 Msa0072720:intron 40.0%
!! TTGAATAAACCGGTTTTGCG+AGG + chr1_2:45769070-45769089 None:intergenic 40.0%
!! AAAACTGGCTTGTAAGGTGA+GGG - chr1_2:45769106-45769125 Msa0072720:CDS 40.0%
ACTAGAGACTAGTGCTTACA+AGG + chr1_2:45769147-45769166 None:intergenic 40.0%
CTAAGGCAGGTGGAATAATA+GGG - chr1_2:45769231-45769250 Msa0072720:intron 40.0%
!! ACTCTGAGATATATGTGAGG+GGG - chr1_2:45769631-45769650 Msa0072720:intron 40.0%
! TACCGCTTATCGTTTTATCC+TGG - chr1_2:45769742-45769761 Msa0072720:intron 40.0%
!! TCTCTAGGATATGCAAAACC+AGG + chr1_2:45769763-45769782 None:intergenic 40.0%
!! GGCTGGTCTTATGCTTTAAA+GGG + chr1_2:45769829-45769848 None:intergenic 40.0%
!! TGGCTGGTCTTATGCTTTAA+AGG + chr1_2:45769830-45769849 None:intergenic 40.0%
TAAGACCAGCCATGCTATAT+AGG - chr1_2:45769838-45769857 Msa0072720:intron 40.0%
AAGACCAGCCATGCTATATA+GGG - chr1_2:45769839-45769858 Msa0072720:intron 40.0%
AAGTATGGTCAATGTTGTGG+AGG - chr1_2:45769892-45769911 Msa0072720:intron 40.0%
GTTCGGAGTTGAAAATCTCT+TGG - chr1_2:45770160-45770179 Msa0072720:CDS 40.0%
AAGATGCAATTGATCGAGCT+AGG - chr1_2:45770246-45770265 Msa0072720:CDS 40.0%
AGATGCAATTGATCGAGCTA+GGG - chr1_2:45770247-45770266 Msa0072720:CDS 40.0%
TGCAAAAGCTTCTTCACATC+TGG + chr1_2:45770338-45770357 None:intergenic 40.0%
! AGATGTGAAGAAGCTTTTGC+AGG - chr1_2:45770337-45770356 Msa0072720:intron 40.0%
! GATGTGAAGAAGCTTTTGCA+GGG - chr1_2:45770338-45770357 Msa0072720:intron 40.0%
! ATGTGAAGAAGCTTTTGCAG+GGG - chr1_2:45770339-45770358 Msa0072720:intron 40.0%
ATTGAGTCAGAAATGCGTAC+TGG - chr1_2:45770398-45770417 Msa0072720:CDS 40.0%
!! AGCAAAGCTTGTTGAGTACT+GGG - chr1_2:45770424-45770443 Msa0072720:intron 40.0%
GCCTGTATTGCAGCAAATAA+TGG + chr1_2:45770569-45770588 None:intergenic 40.0%
GAAATCTGAGGAGGATATTG+AGG - chr1_2:45770688-45770707 Msa0072720:intron 40.0%
TCTTGACCCTCTGCTTTAAT+GGG + chr1_2:45770861-45770880 None:intergenic 40.0%
TTCTTGACCCTCTGCTTTAA+TGG + chr1_2:45770862-45770881 None:intergenic 40.0%
ATTAAAGCAGAGGGTCAAGA+AGG - chr1_2:45770861-45770880 Msa0072720:intron 40.0%
AGGTGAAGAAGTAGAAGATG+AGG - chr1_2:45770881-45770900 Msa0072720:intron 40.0%
AAGAAGTAGAAGATGAGGCT+GGG - chr1_2:45770886-45770905 Msa0072720:intron 40.0%
TCATCACCATGAAACAGTTC+TGG + chr1_2:45770921-45770940 None:intergenic 40.0%
! ATAGGCTAACTTGTCCACAA+TGG - chr1_2:45771043-45771062 Msa0072720:intron 40.0%
TTCCTGTGAATGTACCATTG+TGG + chr1_2:45771060-45771079 None:intergenic 40.0%
GATGAAAGCCATGAAGGTTA+TGG - chr1_2:45771169-45771188 Msa0072720:intron 40.0%
AATAGCTCCCATAACCTTCA+TGG + chr1_2:45771180-45771199 None:intergenic 40.0%
GTTATGGGAGCTATTGAAGA+AGG - chr1_2:45771185-45771204 Msa0072720:intron 40.0%
! GGTTTCTCGAATGGTTTTCT+TGG - chr1_2:45771500-45771519 Msa0072720:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_2:45771531-45771550 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr1_2:45771569-45771588 Msa0072720:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG + chr1_2:45771693-45771712 None:intergenic 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG + chr1_2:45771740-45771759 None:intergenic 40.0%
CACTTACTTTACTCTCGTGT+TGG - chr1_2:45771743-45771762 Msa0072720:CDS 40.0%
! GTTGTATGATACGGAGTGTT+GGG + chr1_2:45771779-45771798 None:intergenic 40.0%
TGTTGTATGATACGGAGTGT+TGG + chr1_2:45771780-45771799 None:intergenic 40.0%
TCCGTATCATACAACATTGC+CGG - chr1_2:45771784-45771803 Msa0072720:intron 40.0%
ACCGGCAATGTTGTATGATA+CGG + chr1_2:45771788-45771807 None:intergenic 40.0%
TAAGTGATAAATGTTGGCGC+AGG - chr1_2:45772061-45772080 Msa0072720:CDS 40.0%
! ATTGGTGGCATGACAAATAC+AGG - chr1_2:45772087-45772106 Msa0072720:CDS 40.0%
GTGTTCATACTGGATATGAG+TGG - chr1_2:45772135-45772154 Msa0072720:CDS 40.0%
TGCATCATAAGATTCCATGC+AGG - chr1_2:45772308-45772327 Msa0072720:five_prime_UTR 40.0%
GCATCATAAGATTCCATGCA+GGG - chr1_2:45772309-45772328 Msa0072720:five_prime_UTR 40.0%
CTTACAATGTCTTCGTATGG+TGG + chr1_2:45772335-45772354 None:intergenic 40.0%
GAAAAATAACGAACCTGCGG+CGG + chr1_2:45765230-45765249 Msa0072710:three_prime_UTR 45.0%
CTTCTCAGATTCTTACGCTC+AGG + chr1_2:45765410-45765429 Msa0072710:three_prime_UTR 45.0%
CCGGATTCTATCGGAATGAT+CGG + chr1_2:45765506-45765525 Msa0072710:three_prime_UTR 45.0%
CCGATCATTCCGATAGAATC+CGG - chr1_2:45765503-45765522 Msa0072720:CDS 45.0%
ATCATTCCGATAGAATCCGG+AGG - chr1_2:45765506-45765525 Msa0072720:CDS 45.0%
TATCCGAGTCCGATTCATGT+CGG + chr1_2:45765573-45765592 Msa0072710:three_prime_UTR 45.0%
GTAGTAGTGATAGGGATGGT+AGG - chr1_2:45765611-45765630 Msa0072720:CDS 45.0%
GTAGGAAGAGAAAGTCCTCA+AGG - chr1_2:45765629-45765648 Msa0072720:intron 45.0%
TTGAAGGCTCATACTGTGTC+TGG - chr1_2:45765977-45765996 Msa0072720:intron 45.0%
TGGTAGGCACTAGGTAGTTA+TGG - chr1_2:45766222-45766241 Msa0072720:intron 45.0%
TTGAGATTCCTCCCTATTGC+TGG - chr1_2:45766313-45766332 Msa0072720:intron 45.0%
!! AGTTGTTTTGTTGGCGTGAC+TGG - chr1_2:45766896-45766915 Msa0072720:intron 45.0%
! ACTTGAGAAAGCACGACATG+AGG - chr1_2:45767098-45767117 Msa0072720:CDS 45.0%
AGCACGACATGAGGAAGAAA+TGG - chr1_2:45767107-45767126 Msa0072720:CDS 45.0%
TGCCAGTTATTCCCAAACCT+TGG - chr1_2:45767237-45767256 Msa0072720:intron 45.0%
CACCAAGGTTTGGGAATAAC+TGG + chr1_2:45767242-45767261 None:intergenic 45.0%
!!! CTTCTCTTTTTTCCCAGTCC+TGG + chr1_2:45767348-45767367 None:intergenic 45.0%
GGACTGGGAAAAAAGAGAAG+TGG - chr1_2:45767348-45767367 Msa0072720:CDS 45.0%
CTGGGAAAAAAGAGAAGTGG+AGG - chr1_2:45767351-45767370 Msa0072720:CDS 45.0%
!! AGATGGATTGATGCAGTCGT+GGG + chr1_2:45767825-45767844 None:intergenic 45.0%
!! AAGATGGATTGATGCAGTCG+TGG + chr1_2:45767826-45767845 None:intergenic 45.0%
ACAACCATGAAGGCAGTGTA+TGG - chr1_2:45768010-45768029 Msa0072720:intron 45.0%
! GTCATGGCAGTTGTGGATTT+TGG + chr1_2:45768080-45768099 None:intergenic 45.0%
AATTGTGGTCATGGCAGTTG+TGG + chr1_2:45768087-45768106 None:intergenic 45.0%
TCGCTGAGTGACAGAAATTG+TGG + chr1_2:45768102-45768121 None:intergenic 45.0%
GTTTGTATAGAGAGGGGGAA+TGG - chr1_2:45768278-45768297 Msa0072720:intron 45.0%
GGGTTTGACAGTGAACGAAA+TGG - chr1_2:45768565-45768584 Msa0072720:intron 45.0%
!! ATATTCTACATGGGTTGGCG+TGG + chr1_2:45768636-45768655 None:intergenic 45.0%
CGCCAACCCATGTAGAATAT+TGG - chr1_2:45768636-45768655 Msa0072720:intron 45.0%
!! TTCTAAGGTGAGGACTGCTT+AGG - chr1_2:45768826-45768845 Msa0072720:intron 45.0%
CGCTATAGATGTCCAGACAT+GGG + chr1_2:45768941-45768960 None:intergenic 45.0%
ACGCTATAGATGTCCAGACA+TGG + chr1_2:45768942-45768961 None:intergenic 45.0%
TAGAGTCCATCCTAGATCAC+AGG + chr1_2:45769010-45769029 None:intergenic 45.0%
!! CCTTACAAGCCAGTTTTGTG+AGG + chr1_2:45769103-45769122 None:intergenic 45.0%
!! CCTCACAAAACTGGCTTGTA+AGG - chr1_2:45769100-45769119 Msa0072720:CDS 45.0%
!! CAAAACTGGCTTGTAAGGTG+AGG - chr1_2:45769105-45769124 Msa0072720:CDS 45.0%
AGACTAGTGCTTACAAGGCT+TGG + chr1_2:45769142-45769161 None:intergenic 45.0%
GCTAAGGCAGGTGGAATAAT+AGG - chr1_2:45769230-45769249 Msa0072720:intron 45.0%
AGATATATGTGAGGGGGTCA+TGG - chr1_2:45769637-45769656 Msa0072720:intron 45.0%
TGAACAATGGCACTGTCTCT+AGG + chr1_2:45769778-45769797 None:intergenic 45.0%
TCAACCCTATATAGCATGGC+TGG + chr1_2:45769846-45769865 None:intergenic 45.0%
GTTAAGGAAGCAACCCACAA+TGG + chr1_2:45770092-45770111 None:intergenic 45.0%
ACTCCTTCTGGTGAGTGATT+GGG - chr1_2:45770202-45770221 Msa0072720:CDS 45.0%
TGCAGAATTGGAAGCTTTGC+AGG - chr1_2:45770370-45770389 Msa0072720:CDS 45.0%
!! CAGCAAAGCTTGTTGAGTAC+TGG - chr1_2:45770423-45770442 Msa0072720:intron 45.0%
!! CCTTGGCTTTATATATGCGG+AGG + chr1_2:45770466-45770485 None:intergenic 45.0%
CCTCCGCATATATAAAGCCA+AGG - chr1_2:45770463-45770482 Msa0072720:intron 45.0%
ACGCCTTAAGAAACCATCAG+AGG - chr1_2:45770634-45770653 Msa0072720:CDS 45.0%
CGCCTTAAGAAACCATCAGA+GGG - chr1_2:45770635-45770654 Msa0072720:CDS 45.0%
CACCCTCTGATGGTTTCTTA+AGG + chr1_2:45770640-45770659 None:intergenic 45.0%
!! ACCCTCTGCTTTAATGGGTT+CGG + chr1_2:45770856-45770875 None:intergenic 45.0%
GAAGAAGTAGAAGATGAGGC+TGG - chr1_2:45770885-45770904 Msa0072720:intron 45.0%
GGAAGCTATTGATCCTGAAG+AGG - chr1_2:45770947-45770966 Msa0072720:intron 45.0%
GTCCACAATGGTACATTCAC+AGG - chr1_2:45771055-45771074 Msa0072720:intron 45.0%
GAGACGAATTCAGGAAGCAA+TGG - chr1_2:45771112-45771131 Msa0072720:intron 45.0%
! GGAGATGTAATGTTTGGCTC+TGG - chr1_2:45771206-45771225 Msa0072720:intron 45.0%
CTCTGGTGCAGAAGTAAATC+TGG - chr1_2:45771223-45771242 Msa0072720:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_2:45771390-45771409 Msa0072720:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_2:45771391-45771410 Msa0072720:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr1_2:45771570-45771589 Msa0072720:intron 45.0%
ATGACACCATTCGAGAGAGT+GGG + chr1_2:45771663-45771682 None:intergenic 45.0%
AATGACACCATTCGAGAGAG+TGG + chr1_2:45771664-45771683 None:intergenic 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + chr1_2:45771732-45771751 None:intergenic 45.0%
ACATTGCCGGTCATACTACA+TGG - chr1_2:45771797-45771816 Msa0072720:intron 45.0%
AAATGTTGGCGCAGGTCTAT+TGG - chr1_2:45772069-45772088 Msa0072720:CDS 45.0%
TCATGACAATCCACCTCCAA+AGG - chr1_2:45772184-45772203 Msa0072720:CDS 45.0%
CACCTCCAAAGGTTGTACAA+GGG - chr1_2:45772195-45772214 Msa0072720:CDS 45.0%
TACCCTTGTACAACCTTTGG+AGG + chr1_2:45772200-45772219 None:intergenic 45.0%
GTGTCTTGTCTACAAGGTCT+GGG + chr1_2:45772241-45772260 None:intergenic 45.0%
TGTGTCTTGTCTACAAGGTC+TGG + chr1_2:45772242-45772261 None:intergenic 45.0%
GAGCTTGTGTCTTGTCTACA+AGG + chr1_2:45772247-45772266 None:intergenic 45.0%
ATTGAGAAGGATGGCAGCAA+TGG - chr1_2:45772278-45772297 Msa0072720:exon 45.0%
ACCACTCCTCCGGATTCTAT+CGG + chr1_2:45765515-45765534 Msa0072710:three_prime_UTR 50.0%
GGAGTGGTCACCATAGTGAT+CGG - chr1_2:45765527-45765546 Msa0072720:CDS 50.0%
! TTTGTGGAGAGGGTAGTGGT+AGG - chr1_2:45766206-45766225 Msa0072720:intron 50.0%
TTCAGCAACCAGCAATAGGG+AGG + chr1_2:45766324-45766343 Msa0072710:intron 50.0%
TAATCAATAACCCGGGGGCT+GGG + chr1_2:45766961-45766980 None:intergenic 50.0%
ATAATCAATAACCCGGGGGC+TGG + chr1_2:45766962-45766981 None:intergenic 50.0%
AGAATATAGCCGAGACAGGC+AGG + chr1_2:45767208-45767227 None:intergenic 50.0%
! TGGAGGTATGGCTGCTTGAA+TGG - chr1_2:45767368-45767387 Msa0072720:CDS 50.0%
GTTGCCATACACTGCCTTCA+TGG + chr1_2:45768017-45768036 None:intergenic 50.0%
AGTGAAGAAAACGGGTGAGG+TGG + chr1_2:45768189-45768208 None:intergenic 50.0%
AGCAGTGAAGAAAACGGGTG+AGG + chr1_2:45768192-45768211 None:intergenic 50.0%
CTGCTTTCCAACTGCTGTGA+TGG - chr1_2:45768207-45768226 Msa0072720:intron 50.0%
GCAGCAGATGGTGTTCAATC+TGG - chr1_2:45768256-45768275 Msa0072720:intron 50.0%
GCAGTCCTCACCTTAGAAGT+TGG + chr1_2:45768824-45768843 None:intergenic 50.0%
! CGGTTTTGCGAGGTTGAGTT+GGG + chr1_2:45769060-45769079 None:intergenic 50.0%
CCAACTCAACCTCGCAAAAC+CGG - chr1_2:45769058-45769077 Msa0072720:intron 50.0%
TGTAAGGTGAGGGTTGTCCA+AGG - chr1_2:45769116-45769135 Msa0072720:CDS 50.0%
TCAAATCCTAAGCCTGAGGC+GGG + chr1_2:45769196-45769215 None:intergenic 50.0%
GTCAAATCCTAAGCCTGAGG+CGG + chr1_2:45769197-45769216 None:intergenic 50.0%
GGTGTCAAATCCTAAGCCTG+AGG + chr1_2:45769200-45769219 None:intergenic 50.0%
AGGATTTGACACCTGAAGCG+TGG - chr1_2:45769207-45769226 Msa0072720:intron 50.0%
GGATTTGACACCTGAAGCGT+GGG - chr1_2:45769208-45769227 Msa0072720:intron 50.0%
TGTGAGGGGGTCATGGTTAA+TGG - chr1_2:45769644-45769663 Msa0072720:intron 50.0%
CACTCCTTCTGGTGAGTGAT+TGG - chr1_2:45770201-45770220 Msa0072720:CDS 50.0%
ACTCCCAATCACTCACCAGA+AGG + chr1_2:45770208-45770227 None:intergenic 50.0%
TCTCTGTTCAGCAAGCACCT+CGG + chr1_2:45770294-45770313 None:intergenic 50.0%
GGGGAAGACACATGCAGAAT+TGG - chr1_2:45770358-45770377 Msa0072720:CDS 50.0%
TCCCGAACCCATTAAAGCAG+AGG - chr1_2:45770851-45770870 Msa0072720:intron 50.0%
!! CCCTCTGCTTTAATGGGTTC+GGG + chr1_2:45770855-45770874 None:intergenic 50.0%
CCCGAACCCATTAAAGCAGA+GGG - chr1_2:45770852-45770871 Msa0072720:intron 50.0%
AGTAGAGCTCTGTCCTCTTC+AGG + chr1_2:45770963-45770982 None:intergenic 50.0%
TGAAGAGGACAGAGCTCTAC+TGG - chr1_2:45770962-45770981 Msa0072720:CDS 50.0%
AGAGCAGCAGAGACGAATTC+AGG - chr1_2:45771103-45771122 Msa0072720:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_2:45771392-45771411 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_2:45771389-45771408 Msa0072720:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_2:45771395-45771414 Msa0072720:intron 50.0%
GCGGAGAGTCAGGTTAAAAG+AGG + chr1_2:45771537-45771556 None:intergenic 50.0%
! AGATCAAATGGCGGAGAGTC+AGG + chr1_2:45771547-45771566 None:intergenic 50.0%
TGACACCATTCGAGAGAGTG+GGG + chr1_2:45771662-45771681 None:intergenic 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr1_2:45771712-45771731 None:intergenic 50.0%
!! GTATGATACGGAGTGTTGGG+CGG + chr1_2:45771776-45771795 None:intergenic 50.0%
! CCTTGTACAACCTTTGGAGG+TGG + chr1_2:45772197-45772216 None:intergenic 50.0%
CCACCTCCAAAGGTTGTACA+AGG - chr1_2:45772194-45772213 Msa0072720:CDS 50.0%
CGGTTGGAGAATTACGGCGA+CGG + chr1_2:45765201-45765220 Msa0072710:three_prime_UTR 55.0%
TCCGATAGAATCCGGAGGAG+TGG - chr1_2:45765511-45765530 Msa0072720:CDS 55.0%
CACTATGGTGACCACTCCTC+CGG + chr1_2:45765525-45765544 Msa0072710:three_prime_UTR 55.0%
GTGGTCACCATAGTGATCGG+CGG - chr1_2:45765530-45765549 Msa0072720:CDS 55.0%
TCTGTGACCGCCGATCACTA+TGG + chr1_2:45765540-45765559 Msa0072710:three_prime_UTR 55.0%
ATAGTGATCGGCGGTCACAG+AGG - chr1_2:45765539-45765558 Msa0072720:CDS 55.0%
GAGACGGAGCCGACATGAAT+CGG - chr1_2:45765561-45765580 Msa0072720:CDS 55.0%
GAGCCGACATGAATCGGACT+CGG - chr1_2:45765567-45765586 Msa0072720:CDS 55.0%
! GGCGAAAAAGGCGCAGAGAA+AGG - chr1_2:45765684-45765703 Msa0072720:intron 55.0%
! AGAGGGTAGTGGTAGGCACT+AGG - chr1_2:45766213-45766232 Msa0072720:intron 55.0%
AATCAATAACCCGGGGGCTG+GGG + chr1_2:45766960-45766979 None:intergenic 55.0%
ATATAGCCGAGACAGGCAGG+TGG + chr1_2:45767205-45767224 None:intergenic 55.0%
TCGAGCTGAGTTCCAGGACT+GGG - chr1_2:45767333-45767352 Msa0072720:CDS 55.0%
CAGTCGTGGGTCGAAGACAT+GGG + chr1_2:45767812-45767831 None:intergenic 55.0%
CAGCAGCACTGTGACGACAA+CGG + chr1_2:45768161-45768180 None:intergenic 55.0%
ACTCGGTCCATCACAGCAGT+TGG + chr1_2:45768217-45768236 None:intergenic 55.0%
GATCTCAACACGCCCATGTC+TGG - chr1_2:45768926-45768945 Msa0072720:intron 55.0%
! CCGGTTTTGCGAGGTTGAGT+TGG + chr1_2:45769061-45769080 None:intergenic 55.0%
GTGCTTACAAGGCTTGGCCT+TGG + chr1_2:45769136-45769155 None:intergenic 55.0%
CTTCATGCAGGCACTCCTTC+TGG - chr1_2:45770190-45770209 Msa0072720:CDS 55.0%
ATTGATCGAGCTAGGGTGCG+TGG - chr1_2:45770254-45770273 Msa0072720:intron 55.0%
! GAGGTGCTTGCTGAACAGAG+AGG - chr1_2:45770293-45770312 Msa0072720:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_2:45771397-45771416 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_2:45771403-45771422 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_2:45771404-45771423 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_2:45771403-45771422 Msa0072720:intron 55.0%
GACACCATTCGAGAGAGTGG+GGG + chr1_2:45771661-45771680 None:intergenic 55.0%
CGGAGATGAGGATGTTGCGT+TGG + chr1_2:45771720-45771739 None:intergenic 55.0%
TGTTGGCGCAGGTCTATTGG+TGG - chr1_2:45772072-45772091 Msa0072720:CDS 55.0%
GGCATGACAAATACAGGCCC+AGG - chr1_2:45772093-45772112 Msa0072720:CDS 55.0%
ATCGGCGGTCACAGAGGAGA+CGG - chr1_2:45765545-45765564 Msa0072720:CDS 60.0%
TGGGTACCACCTGCCTGTCT+CGG - chr1_2:45767196-45767215 Msa0072720:intron 60.0%
ACGTGCTCGAGCTGAGTTCC+AGG - chr1_2:45767327-45767346 Msa0072720:CDS 60.0%
CTCGAGCTGAGTTCCAGGAC+TGG - chr1_2:45767332-45767351 Msa0072720:CDS 60.0%
TCGTGGGTCGAAGACATGGG+AGG + chr1_2:45767809-45767828 None:intergenic 60.0%
GCAGTCGTGGGTCGAAGACA+TGG + chr1_2:45767813-45767832 None:intergenic 60.0%
CAAATCTCGACACCCGCCTC+AGG - chr1_2:45769181-45769200 Msa0072720:intron 60.0%
! GACACCTGAAGCGTGGGCTA+AGG - chr1_2:45769214-45769233 Msa0072720:intron 60.0%
TGGAGAAGAACCTCCAGCCG+AGG - chr1_2:45770274-45770293 Msa0072720:intron 60.0%
TGTTCAGCAAGCACCTCGGC+TGG + chr1_2:45770290-45770309 None:intergenic 60.0%
GCTACCCCCACTCTCTCGAA+TGG - chr1_2:45771654-45771673 Msa0072720:intron 60.0%
CTTCGTATGGTGGCCCTGCA+TGG + chr1_2:45772325-45772344 None:intergenic 60.0%
CGAACCTGCGGCGGAGAACA+CGG + chr1_2:45765221-45765240 Msa0072710:three_prime_UTR 65.0%
CCTTCATACACCCCAGCCCC+CGG - chr1_2:45766947-45766966 Msa0072720:intron 65.0%
CTTCATACACCCCAGCCCCC+GGG - chr1_2:45766948-45766967 Msa0072720:intron 65.0%
TCGACACCCGCCTCAGGCTT+AGG - chr1_2:45769187-45769206 Msa0072720:intron 65.0%
CCTGCCTTAGCCCACGCTTC+AGG + chr1_2:45769221-45769240 None:intergenic 65.0%
! CCTGAAGCGTGGGCTAAGGC+AGG - chr1_2:45769218-45769237 Msa0072720:intron 65.0%
! GAAGCGTGGGCTAAGGCAGG+TGG - chr1_2:45769221-45769240 Msa0072720:intron 65.0%
TCAGCAAGCACCTCGGCTGG+AGG + chr1_2:45770287-45770306 None:intergenic 65.0%
CCTGCGGCGGAGAACACGGT+TGG + chr1_2:45765217-45765236 Msa0072710:three_prime_UTR 70.0%
CCAACCGTGTTCTCCGCCGC+AGG - chr1_2:45765214-45765233 Msa0072720:CDS 70.0%
CCGGGGGCTGGGGTGTATGA+AGG + chr1_2:45766950-45766969 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 45765186 45772544 45765186 ID=Msa0072720;Name=Msa0072720
chr1_2 mRNA 45765186 45772544 45765186 ID=Msa0072720-mRNA-1;Parent=Msa0072720;Name=Msa0072720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=90|0.61|0.57|1|0.92|0.85|14|0|658
chr1_2 exon 45765186 45765305 45765186 ID=Msa0072720-mRNA-1:exon:13866;Parent=Msa0072720-mRNA-1
chr1_2 exon 45765381 45765647 45765381 ID=Msa0072720-mRNA-1:exon:13865;Parent=Msa0072720-mRNA-1
chr1_2 exon 45766477 45766653 45766477 ID=Msa0072720-mRNA-1:exon:13864;Parent=Msa0072720-mRNA-1
chr1_2 exon 45766747 45766904 45766747 ID=Msa0072720-mRNA-1:exon:13863;Parent=Msa0072720-mRNA-1
chr1_2 exon 45767008 45767143 45767008 ID=Msa0072720-mRNA-1:exon:13862;Parent=Msa0072720-mRNA-1
chr1_2 exon 45767246 45767530 45767246 ID=Msa0072720-mRNA-1:exon:13861;Parent=Msa0072720-mRNA-1
chr1_2 exon 45769069 45769164 45769069 ID=Msa0072720-mRNA-1:exon:13860;Parent=Msa0072720-mRNA-1
chr1_2 exon 45770130 45770270 45770130 ID=Msa0072720-mRNA-1:exon:13859;Parent=Msa0072720-mRNA-1
chr1_2 exon 45770358 45770420 45770358 ID=Msa0072720-mRNA-1:exon:13858;Parent=Msa0072720-mRNA-1
chr1_2 exon 45770602 45770673 45770602 ID=Msa0072720-mRNA-1:exon:13857;Parent=Msa0072720-mRNA-1
chr1_2 exon 45770949 45771048 45770949 ID=Msa0072720-mRNA-1:exon:13856;Parent=Msa0072720-mRNA-1
chr1_2 exon 45771683 45771774 45771683 ID=Msa0072720-mRNA-1:exon:13855;Parent=Msa0072720-mRNA-1
chr1_2 exon 45772025 45772334 45772025 ID=Msa0072720-mRNA-1:exon:13854;Parent=Msa0072720-mRNA-1
chr1_2 exon 45772495 45772544 45772495 ID=Msa0072720-mRNA-1:exon:13853;Parent=Msa0072720-mRNA-1
chr1_2 five_prime_UTR 45772495 45772544 45772495 ID=Msa0072720-mRNA-1:five_prime_utr;Parent=Msa0072720-mRNA-1
chr1_2 five_prime_UTR 45772295 45772334 45772295 ID=Msa0072720-mRNA-1:five_prime_utr;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45772025 45772294 45772025 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45771683 45771774 45771683 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45770949 45771048 45770949 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45770602 45770673 45770602 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45770358 45770420 45770358 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45770130 45770270 45770130 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45769069 45769164 45769069 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45767246 45767530 45767246 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45767008 45767143 45767008 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45766747 45766904 45766747 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45766477 45766653 45766477 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45765381 45765647 45765381 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
chr1_2 CDS 45765186 45765305 45765186 ID=Msa0072720-mRNA-1:cds;Parent=Msa0072720-mRNA-1
Gene Sequence

>Msa0072720

ATGGGTAGGAAAGAAAGAAGGAGAAGGAAATCGGATGATTCTGCATCCGAATCAACTTCTTCGCAATCCGATCATTCCGATAGAATCCGGAGGAGTGGTCACCATAGTGATCGGCGGTCACAGAGGAGACGGAGCCGACATGAATCGGACTCGGATAATTCTACTTCTGATGATAGTAGTAGTGATAGGGATGGTAGGAAGAGAAAGTCCTCAAGGAAAATTACTGAAGAGGAAATAGCTCAGTATTTGGCGAAAAAGGCGCAGAGAAAGGCGTTGAAAGTTGCTAAGAAATTGAAGGCTCATACTGTGTCTGGATATTCAAATGACTCGAATCCATTTGGTGATTCCAATCTTAATGAGAAGTTTGTTTGGCGTAAGAAGATTGAGCGTGATGTTGTTCAAGGTGTGCCTATTGATGATTTTTCAGTTAAAGCTGAGAAAAAGAGACAGAGAGAAAGGATGGCGGAAATTGAAAAGGTGAAAAAACGAAGAGAAGAGAGGGCACTTGAGAAAGCACGACATGAGGAAGAAATGGCATTGTTAGCTAGAGAACGTGCTCGAGCTGAGTTCCAGGACTGGGAAAAAAGAGAAGTGGAGTTTCATTTTGATCAAAGCAAGTTTAGGTCTGAAATTAGATTGCGTGAAGGACGTGCCAAGCCAATTGATATCCTTACCAAACATCTTGATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACAGTGAACGAAATGGAAGAGCTCCGTGATGATATCAAAATGCATTTGGACTTTGACAGGGCCACGCCAACCCATGTAGAATATTGGGAGGCACTCCTTCTGGTGAGTGATTGGGAGTTAGCTGAAGCTAGAAAAAAAGATGCAATTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCAGCCGAGGTGCTTGCTGAACAGAGAGGTCTGCATAACAGTGTTGAACCAGATGTGAAGAAGCTTTTGCAGGGGAAGACACATGCAGAATTGGAAGCTTTGCAGGCGCATATTGAGTCAGAAATGCGTACTGGTGCAGCAAAGCTTGTTGAGTACTGGGAGACTGTTTTAAAGTACCTCCGCATATATAAAGCCAAGGCTTGTTTAAAGGAAATTCATGCCAAAATGTTACGCAAGCATTTGCTACGCCTTAAGAAACCATCAGAGGGTGAAGATAAATTGGAAGATGCTCATGTTATGAAATCTGAGGAGGATATTGAGGATTATGTTAAATTCCAATATGCAAAGAGATCACTTTCTCCCGAACCCATTAAAGCAGAGGGTCAAGAAGGTGAAGAAGTAGAAGATGAGGCTGGGTCCTTTTCACCAGAACTGTTTCATGGTGATGAAAATGAGGAAGCTATTGATCCTGAAGAGGACAGAGCTCTACTGGAACAAAAACGTTTGTCTGTAAAAGAAGAGCAGCAGAGACGAATTCAGGAAGCAATGGCATCAAAGCCTGCTCCATCTGAAGATAATTTTGAGATGAAAGCCATGAAGGTTATGGGAGCTATTGAAGAAGGAGATGTAATGTTTGGCTCTGGTGCAGAAGTAAATCTGGATTCACAGGTCTATTGGTGGCATGACAAATACAGGCCCAGGAAACCAAAGTATTTCAACCGTGTTCATACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAATCCACCTCCAAAGGTTGTACAAGGGTATAAATTTAACATATTCTACCCAGACCTTGTAGACAAGACACAAGCTCCAACTTACACTATTGAGAAGGATGGCAGCAATGGCGAGACTTGCATCATAAGATTCCATGCAGGGCCACCATACGAAGACATTGCTTTCCGCATTGTAAACAAAGAATGGGAATATTCTCACAAGAAAGGTTTTAAGTGCACATTTGAACGTGGAATTCTACATGTATACTTCAATTTCAAACGCCACCGCTACCGCAGATAA

Protein sequence

>Msa0072720

MGRKERRRRKSDDSASESTSSQSDHSDRIRRSGHHSDRRSQRRRSRHESDSDNSTSDDSSSDRDGRKRKSSRKITEEEIAQYLAKKAQRKALKVAKKLKAHTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVVQGVPIDDFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKREVEFHFDQSKFRSEIRLREGRAKPIDILTKHLDGSDDLDIEINEPYMVFKGLTVNEMEELRDDIKMHLDFDRATPTHVEYWEALLLVSDWELAEARKKDAIDRARVRGEEPPAEVLAEQRGLHNSVEPDVKKLLQGKTHAELEALQAHIESEMRTGAAKLVEYWETVLKYLRIYKAKACLKEIHAKMLRKHLLRLKKPSEGEDKLEDAHVMKSEEDIEDYVKFQYAKRSLSPEPIKAEGQEGEEVEDEAGSFSPELFHGDENEEAIDPEEDRALLEQKRLSVKEEQQRRIQEAMASKPAPSEDNFEMKAMKVMGAIEEGDVMFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKVVQGYKFNIFYPDLVDKTQAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR*