AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295950 MtrunA17_Chr8g0373511 94.653 505 4 4 1 503 1 484 0.0 886
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295950 AT3G50690.1 55.789 475 162 8 9 479 1 431 6.55e-103 316

Find 206 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGCTTGATGACAATATA+AGG 0.227874 8_3:+54487452 Msa1295950:three_prime_UTR
ATATACGATTTGGTATTTAA+TGG 0.244192 8_3:+54484015 Msa1295950:CDS
AATAAATTTAAGATAGAAAC+TGG 0.257460 8_3:-54487431 None:intergenic
TCGAAAGATGCTGAAGATTC+TGG 0.268201 8_3:-54484174 None:intergenic
GTCTATGTTTGCTTGTAAAA+AGG 0.269253 8_3:+54487176 Msa1295950:three_prime_UTR
CGTTAAAATTCGTAGTGTTT+TGG 0.287432 8_3:+54483979 Msa1295950:five_prime_UTR
GGAGCTTGGTTGGTGATTCT+TGG 0.294608 8_3:+54487197 Msa1295950:three_prime_UTR
GATTAAGTCGTTGAAGTATT+TGG 0.300256 8_3:+54484465 Msa1295950:CDS
TTTAAGACATGCACGATTGA+TGG 0.303552 8_3:-54487633 None:intergenic
ATCTTGATTTATCGAATAAT+AGG 0.309822 8_3:+54484329 Msa1295950:CDS
AGACTTTGGTGCTGGATATC+TGG 0.318154 8_3:+54486618 Msa1295950:CDS
ATCATTGTCCCTCTTCCTCT+TGG 0.319916 8_3:-54486794 None:intergenic
GGTATTTAATGGATGAGATC+TGG 0.332560 8_3:+54484026 Msa1295950:CDS
TGTGGATTTCTTTGATTTAG+TGG 0.344103 8_3:+54487888 Msa1295950:three_prime_UTR
CGTGTATGAGATATACGATT+TGG 0.346866 8_3:+54484005 Msa1295950:exon
TCCACAATATAGGCATATTA+TGG 0.347540 8_3:-54487951 None:intergenic
TGGCACCCAACTTGCTTCAT+AGG 0.352525 8_3:-54487353 None:intergenic
GTGTGGTCAATGGTGCTTCT+TGG 0.358202 8_3:-54486866 None:intergenic
GATGATGATGATGAGGATTC+TGG 0.363731 8_3:+54484811 Msa1295950:CDS
GTTTCTCTGCTTCCATTACT+TGG 0.365607 8_3:-54486930 None:intergenic
GGGTTAAGGATTATCGATCT+AGG 0.372768 8_3:+54484431 Msa1295950:CDS
TCTAGCCACGTGGGTTAGTT+TGG 0.374378 8_3:+54487662 Msa1295950:three_prime_UTR
ACAATTGCATACACAATTAG+AGG 0.375271 8_3:-54487532 None:intergenic
AACTGGCCACGTCAATATAA+TGG 0.389767 8_3:-54487373 None:intergenic
GAGGAAGATGAGGAGGATCC+GGG 0.389794 8_3:+54484583 Msa1295950:CDS
AAATCTGTGTTCCACAATAT+AGG 0.396067 8_3:-54487961 None:intergenic
TTCTGCAAACTCCGCAGCCT+CGG 0.398831 8_3:-54484232 None:intergenic
GGAGGAAGATGAGGAGGATC+CGG 0.400052 8_3:+54484582 Msa1295950:CDS
GAACATGACATAATTTATAA+TGG 0.401537 8_3:-54486890 None:intergenic
TCATTGTCCCTCTTCCTCTT+GGG 0.401858 8_3:-54486793 None:intergenic
GAGGAGATTGATGAGGAAGA+GGG 0.403055 8_3:+54484835 Msa1295950:CDS
ACAATATAAGGGGAAAATAT+TGG 0.404729 8_3:+54487464 Msa1295950:three_prime_UTR
ACGTCCTTGTACACACTTAA+CGG 0.405028 8_3:-54484122 None:intergenic
TGTATGAGTGTCCTGTTACT+AGG 0.408619 8_3:+54484410 Msa1295950:CDS
GATTCTGGAACCTTTCTAGA+AGG 0.409114 8_3:-54484159 None:intergenic
GTATGAGTGTCCTGTTACTA+GGG 0.412401 8_3:+54484411 Msa1295950:CDS
GGGCATAGTGAAGGTGTTGA+TGG 0.414206 8_3:+54484658 Msa1295950:CDS
AGTTGAATTTGTCTGATAAC+CGG 0.414477 8_3:+54484254 Msa1295950:CDS
CCGGGGAGCGGTGAGATTGA+TGG 0.414886 8_3:+54484601 Msa1295950:CDS
AAACGAAAATTGAAGATTGA+AGG 0.415127 8_3:-54483880 None:intergenic
GTGTCCTGTTACTAGGGTTA+AGG 0.418557 8_3:+54484417 Msa1295950:CDS
TGAGCTTGATGACAATATAA+GGG 0.418997 8_3:+54487453 Msa1295950:three_prime_UTR
TAATCCTTAACCCTAGTAAC+AGG 0.421119 8_3:-54484421 None:intergenic
GTTGAAGTATTTGGATAAGA+TGG 0.429276 8_3:+54484474 Msa1295950:CDS
TGTGGCAATAATTTATGAAC+TGG 0.429557 8_3:-54487390 None:intergenic
GTATTTAATGGATGAGATCT+GGG 0.434647 8_3:+54484027 Msa1295950:CDS
GGTTAATGGGGTGAGTCATC+AGG 0.434758 8_3:+54484750 Msa1295950:CDS
GTGGATTTCTTTGATTTAGT+GGG 0.435213 8_3:+54487889 Msa1295950:three_prime_UTR
TCATCCTCCTCAACATCAAC+CGG 0.446905 8_3:-54484793 None:intergenic
AGGAGGTTACAGAGAGTTCA+AGG 0.448314 8_3:+54484722 Msa1295950:CDS
GGTCAATGGTGCTTCTTGGA+TGG 0.448376 8_3:-54486862 None:intergenic
CACCACCGAGCCTTCTAGAA+AGG 0.454576 8_3:+54484149 Msa1295950:CDS
CACGAGCAAGGGGAGGAAGA+TGG 0.455734 8_3:+54485042 Msa1295950:CDS
AAGTTAATTCCATCTCTGAT+TGG 0.460608 8_3:-54487769 None:intergenic
GATGAGGAGGATCCGGGGAG+CGG 0.463588 8_3:+54484589 Msa1295950:CDS
ATCATAACGAAATATCCGTT+AGG 0.469870 8_3:+54483903 Msa1295950:five_prime_UTR
AGAGCATCATCCTGTCCAAC+TGG 0.472880 8_3:-54486646 None:intergenic
AGAGGAGATTGATGAGGAAG+AGG 0.475352 8_3:+54484834 Msa1295950:CDS
CACAATTAGAGGGGCCCCAT+TGG 0.477493 8_3:-54487521 None:intergenic
ATGCCAGGTAATGTACCAAT+GGG 0.477615 8_3:+54487506 Msa1295950:three_prime_UTR
GCACGAACGTTAACACTTGA+CGG 0.478271 8_3:+54484097 Msa1295950:CDS
TAAATAGAGAATGAAGGGAT+TGG 0.479234 8_3:-54483820 None:intergenic
TCATAACGAAATATCCGTTA+GGG 0.480146 8_3:+54483904 Msa1295950:five_prime_UTR
TGTTCATAAGCACTCCTTGA+GGG 0.483042 8_3:+54487918 Msa1295950:three_prime_UTR
TCTGCAAACTCCGCAGCCTC+GGG 0.486466 8_3:-54484231 None:intergenic
TCTGGTTCAGCCAGTTGGAC+AGG 0.488627 8_3:+54486636 Msa1295950:CDS
TTGTCTGATAACCGGATCGC+TGG 0.489822 8_3:+54484262 Msa1295950:CDS
GGATGATAATGAGGATAATG+AGG 0.491635 8_3:+54484540 Msa1295950:CDS
CGAAGATGGTGAAGAAGAAG+AGG 0.493363 8_3:+54486705 Msa1295950:CDS
ATGATTCCTATGAAGCAAGT+TGG 0.494305 8_3:+54487347 Msa1295950:three_prime_UTR
GGGGTGAGTCATCAGGAGAA+TGG 0.495267 8_3:+54484757 Msa1295950:CDS
GATAGTGATGATGATGAAGA+TGG 0.496649 8_3:+54484895 Msa1295950:CDS
TGATTCCTATGAAGCAAGTT+GGG 0.496824 8_3:+54487348 Msa1295950:three_prime_UTR
GGTTAAGGATTATCGATCTA+GGG 0.497261 8_3:+54484432 Msa1295950:CDS
GAGCGGTGAGATTGATGGAG+GGG 0.499818 8_3:+54484606 Msa1295950:CDS
GGGTGAGTCATCAGGAGAAT+GGG 0.502342 8_3:+54484758 Msa1295950:CDS
GCTTGGTTGGTGATTCTTGG+AGG 0.503613 8_3:+54487200 Msa1295950:three_prime_UTR
GGCCCCATTGGTACATTACC+TGG 0.504726 8_3:-54487509 None:intergenic
AGGAGATTGATGAGGAAGAG+GGG 0.505317 8_3:+54484836 Msa1295950:CDS
CTTCACATCCCAAGAGGAAG+AGG 0.506682 8_3:+54486785 Msa1295950:CDS
GCTGTGGAAACGGCGTTAGA+AGG 0.507491 8_3:+54484055 Msa1295950:CDS
CTGGGAGAAAGCTGTGGAAA+CGG 0.511218 8_3:+54484045 Msa1295950:CDS
CTTGGTTGGTGATTCTTGGA+GGG 0.515441 8_3:+54487201 Msa1295950:three_prime_UTR
AAACGTTGGTGTTTCGTCGT+TGG 0.516059 8_3:+54484201 Msa1295950:CDS
GTCATGTTCATGTTCTGTGA+TGG 0.516793 8_3:+54486904 Msa1295950:three_prime_UTR
TGCTGAGGAAAATGAGAGGC+CGG 0.519348 8_3:+54484498 Msa1295950:CDS
GATTTCTTTGATTTAGTGGG+AGG 0.520836 8_3:+54487892 Msa1295950:three_prime_UTR
TGTTCTATCTAAAACTGTTG+AGG 0.522049 8_3:-54486952 None:intergenic
TGAGGAGAGTGATGCTGATG+AGG 0.523007 8_3:+54484702 Msa1295950:CDS
TGGAGCAGTTCCCGAGGCTG+CGG 0.525753 8_3:+54484221 Msa1295950:CDS
CAGGATGATGCTCTCAATGA+TGG 0.526078 8_3:+54486655 Msa1295950:CDS
CCATCAATCTCACCGCTCCC+CGG 0.526620 8_3:-54484601 None:intergenic
GATGAAGACGACGATGATGA+TGG 0.529486 8_3:+54485120 Msa1295950:CDS
GGATATCTGGTTCAGCCAGT+TGG 0.529575 8_3:+54486631 Msa1295950:CDS
AGATCGATGGGCACGAGCAA+GGG 0.529684 8_3:+54485031 Msa1295950:CDS
CAGGAGGAAGACTTTGGTGC+TGG 0.529748 8_3:+54486610 Msa1295950:intron
GAGATCGATGGGCACGAGCA+AGG 0.532309 8_3:+54485030 Msa1295950:CDS
TTGGAGTATTTAGTCGAAGC+GGG 0.533831 8_3:+54484289 Msa1295950:CDS
TGATGAGGAGGAAGATGAGG+AGG 0.535721 8_3:+54484576 Msa1295950:CDS
GTGGAGAATGGGCATAGTGA+AGG 0.537124 8_3:+54484649 Msa1295950:CDS
ATAGTGATGATGATGAAGAT+GGG 0.538505 8_3:+54484896 Msa1295950:CDS
AACCGCCATCTCCTCTTCAC+CGG 0.538747 8_3:-54485088 None:intergenic
TAACTACAGGAGGAAGACTT+TGG 0.538950 8_3:+54486604 Msa1295950:intron
GGAGATTGATGAGGAAGAGG+GGG 0.542720 8_3:+54484837 Msa1295950:CDS
CTTCCTCTTGGGATGTGAAG+AGG 0.543179 8_3:-54486782 None:intergenic
TAACCGGATCGCTGGAGGGT+TGG 0.543520 8_3:+54484270 Msa1295950:CDS
GAAGATGACAATGGAGAGAC+CGG 0.543571 8_3:+54485069 Msa1295950:CDS
GGAGAGTGATGATGAGGAAG+AGG 0.547227 8_3:+54484519 Msa1295950:CDS
TGTTGAGCCGGTTGATGTTG+AGG 0.548559 8_3:+54484786 Msa1295950:CDS
GGAGCTGCTGACATCGATGA+TGG 0.552690 8_3:+54486676 Msa1295950:CDS
GAATGGGTTTCATGTTGAGC+CGG 0.553635 8_3:+54484774 Msa1295950:CDS
CTGTGATGGCTTCCAAGTAA+TGG 0.554247 8_3:+54486918 Msa1295950:three_prime_UTR
TGGAACCTTTCTAGAAGGCT+CGG 0.556225 8_3:-54484154 None:intergenic
GATGGAGATGAAGATGACAA+TGG 0.557331 8_3:+54485060 Msa1295950:CDS
GGATGATGAAAATGATGAGG+AGG 0.557963 8_3:+54484564 Msa1295950:CDS
CGGTGAGATTGATGGAGGGG+AGG 0.558735 8_3:+54484609 Msa1295950:CDS
TCTTCCTCATCATCACTCTC+CGG 0.560355 8_3:-54484517 None:intergenic
ACTAGCTTCACCTGCGCCAA+CGG 0.560946 8_3:-54484376 None:intergenic
AAATGATGAGGAGGAAGATG+AGG 0.561013 8_3:+54484573 Msa1295950:CDS
ACCATAATATGCCTATATTG+TGG 0.561128 8_3:+54487950 Msa1295950:three_prime_UTR
TGTTGATGCTGATGAGGATG+AGG 0.561346 8_3:+54484684 Msa1295950:CDS
TGATTCTTGGAGGGAAGCAA+AGG 0.561431 8_3:+54487210 Msa1295950:three_prime_UTR
GTCTTAATAGTCACAATGCC+AGG 0.562235 8_3:+54487491 Msa1295950:three_prime_UTR
CCTCTTGGGATGTGAAGAGG+CGG 0.566160 8_3:-54486779 None:intergenic
GCAGGTGAAGCTAGTTTCGT+TGG 0.567872 8_3:+54484384 Msa1295950:CDS
AGGAAGATGAGGAGGATCCG+GGG 0.569429 8_3:+54484584 Msa1295950:CDS
AATGCCAGGTAATGTACCAA+TGG 0.570465 8_3:+54487505 Msa1295950:three_prime_UTR
TTGTCAGATTGCTGAAGAGA+AGG 0.571766 8_3:+54485288 Msa1295950:intron
ATTGATGGAAAATGCTGTGT+TGG 0.572498 8_3:-54487618 None:intergenic
GATGAGGTGGATAATGATGA+AGG 0.573969 8_3:+54484955 Msa1295950:CDS
CAATGGAGAGACCGGTGAAG+AGG 0.576417 8_3:+54485077 Msa1295950:CDS
TGAGGAAGAGGATGATAATG+AGG 0.576584 8_3:+54484531 Msa1295950:CDS
AGAGACCGGTGAAGAGGAGA+TGG 0.577059 8_3:+54485083 Msa1295950:CDS
GGCATTGTGACTATTAAGAC+GGG 0.577907 8_3:-54487488 None:intergenic
CATCTTTCGATTGCAAACGT+TGG 0.580132 8_3:+54484187 Msa1295950:CDS
AGTACTGAAGGTGAGATCGA+TGG 0.584692 8_3:+54485018 Msa1295950:CDS
GATTCTTGGAGGGAAGCAAA+GGG 0.584963 8_3:+54487211 Msa1295950:three_prime_UTR
TTCTGGAGAGGAGATTGATG+AGG 0.585807 8_3:+54484828 Msa1295950:CDS
GGTTGTAAATAGAGAATGAA+GGG 0.587050 8_3:-54483825 None:intergenic
CTGATAACCGGATCGCTGGA+GGG 0.588307 8_3:+54484266 Msa1295950:CDS
TGGCATTGTGACTATTAAGA+CGG 0.589719 8_3:-54487489 None:intergenic
CTCTTGGGATGTGAAGAGGC+GGG 0.589840 8_3:-54486778 None:intergenic
ATGAGGTGGATAATGATGAA+GGG 0.592895 8_3:+54484956 Msa1295950:CDS
GTACTGAAGGTGAGATCGAT+GGG 0.593565 8_3:+54485019 Msa1295950:CDS
GGAGCGGTGAGATTGATGGA+GGG 0.593809 8_3:+54484605 Msa1295950:CDS
TGGAGTTGTTGATGCTGATG+AGG 0.595509 8_3:+54484678 Msa1295950:CDS
AGAGCTAAGCCAATCAGAGA+TGG 0.596560 8_3:+54487760 Msa1295950:three_prime_UTR
CAATTGCATACACAATTAGA+GGG 0.596683 8_3:-54487531 None:intergenic
TGAGGAGGATGATGATGATG+AGG 0.597342 8_3:+54484804 Msa1295950:CDS
CGGTTGTAAATAGAGAATGA+AGG 0.598320 8_3:-54483826 None:intergenic
ATGGTAATGTGTCACCCTCA+AGG 0.598640 8_3:-54487932 None:intergenic
TTATAATGGTGTGTGGTCAA+TGG 0.598793 8_3:-54486876 None:intergenic
CTTTCTAGAAGGCTCGGTGG+TGG 0.598794 8_3:-54484148 None:intergenic
GATGATGGAGAAAACGAAGA+TGG 0.599556 8_3:+54486691 Msa1295950:CDS
TGAGGTGGATAATGATGAAG+GGG 0.600478 8_3:+54484957 Msa1295950:CDS
GGCGCCGTTAAGTGTGTACA+AGG 0.600946 8_3:+54484118 Msa1295950:CDS
GGGAGCGGTGAGATTGATGG+AGG 0.601507 8_3:+54484604 Msa1295950:CDS
CATCAAGCTAGCTTGAGGTG+TGG 0.602723 8_3:+54487870 Msa1295950:three_prime_UTR
GGATGATGAGGATGTTGTTG+AGG 0.602972 8_3:+54484858 Msa1295950:CDS
GATCGATGGGCACGAGCAAG+GGG 0.603104 8_3:+54485032 Msa1295950:CDS
CGTCGTTGGAGCAGTTCCCG+AGG 0.608969 8_3:+54484215 Msa1295950:CDS
GGAGGTTACAGAGAGTTCAA+GGG 0.610540 8_3:+54484723 Msa1295950:CDS
GAGGTTACAGAGAGTTCAAG+GGG 0.610817 8_3:+54484724 Msa1295950:CDS
TGATAATGAGGATAATGAGG+AGG 0.612957 8_3:+54484543 Msa1295950:CDS
AGCCGGAGAGTACTTCTGGA+CGG 0.616299 8_3:+54484989 Msa1295950:CDS
GGAGAGTACTTCTGGACGGT+TGG 0.616930 8_3:+54484993 Msa1295950:CDS
GGACGGTTGGTGAGTACTGA+AGG 0.618952 8_3:+54485006 Msa1295950:CDS
GAGCTTGATGACAATATAAG+GGG 0.618985 8_3:+54487454 Msa1295950:three_prime_UTR
GAGGCCGGAGAGTGATGATG+AGG 0.619379 8_3:+54484513 Msa1295950:CDS
TTTGGATAAGATGGATGCTG+AGG 0.623083 8_3:+54484483 Msa1295950:CDS
CAATGATGATGAAGCTGATG+AGG 0.627438 8_3:+54486810 Msa1295950:CDS
CGATGGGCACGAGCAAGGGG+AGG 0.628652 8_3:+54485035 Msa1295950:CDS
TTGTTCATAAGCACTCCTTG+AGG 0.630631 8_3:+54487917 Msa1295950:three_prime_UTR
ATTATTGCCACATTGTTACG+TGG 0.633384 8_3:+54487401 Msa1295950:three_prime_UTR
ACGAATTTAACAAACCCTAA+CGG 0.636315 8_3:-54483918 None:intergenic
AACCGTCCAGAAGTACTCTC+CGG 0.638201 8_3:-54484991 None:intergenic
TTCACATCCCAAGAGGAAGA+GGG 0.638573 8_3:+54486786 Msa1295950:CDS
GTTGGAGTATTTAGTCGAAG+CGG 0.642635 8_3:+54484288 Msa1295950:CDS
GTTAACATCAAGCTAGCTTG+AGG 0.643914 8_3:+54487865 Msa1295950:three_prime_UTR
GACCGGTGAAGAGGAGATGG+CGG 0.645047 8_3:+54485086 Msa1295950:CDS
CCGCCTCTTCACATCCCAAG+AGG 0.646330 8_3:+54486779 Msa1295950:CDS
TGATGACGATGATGCTCAAG+AGG 0.646390 8_3:+54486747 Msa1295950:CDS
TGATGATGAGGATTCTGGAG+AGG 0.647700 8_3:+54484816 Msa1295950:CDS
GGAGAGTGATGCTGATGAGG+AGG 0.647955 8_3:+54484705 Msa1295950:CDS
AGTTTGCGTGACGCACACGC+AGG 0.652384 8_3:+54487825 Msa1295950:three_prime_UTR
GGAGGATGATGAAAATGATG+AGG 0.656411 8_3:+54484561 Msa1295950:CDS
AAATTGAAAATTGAAATCAA+CGG 0.659103 8_3:-54483846 None:intergenic
TGGATGCTGAGGAAAATGAG+AGG 0.665010 8_3:+54484494 Msa1295950:CDS
TGAGATCTGGGAGAAAGCTG+TGG 0.666233 8_3:+54484039 Msa1295950:CDS
TAGTGATGATGATGAAGATG+GGG 0.670653 8_3:+54484897 Msa1295950:CDS
GATAAATCCACGTAACAATG+TGG 0.671642 8_3:-54487408 None:intergenic
AGATGGGGTTGAGTTTGACG+AGG 0.683136 8_3:+54484912 Msa1295950:CDS
TGGGTGCCATTATATTGACG+TGG 0.687025 8_3:+54487367 Msa1295950:three_prime_UTR
TGACGAGGACGATGATGAGG+TGG 0.690905 8_3:+54484942 Msa1295950:CDS
TGATGACGAGGACGATGATG+AGG 0.692003 8_3:+54484939 Msa1295950:CDS
ATAAATTTAAGATAGAAACT+GGG 0.693167 8_3:-54487430 None:intergenic
GATGATGGAGATGATGACGA+TGG 0.697772 8_3:+54485135 Msa1295950:CDS
ACATAATTTATAATGGTGTG+TGG 0.700752 8_3:-54486883 None:intergenic
TGAGCCGGTTGATGTTGAGG+AGG 0.707857 8_3:+54484789 Msa1295950:CDS
TGACGAGGACGATGATGACG+AGG 0.709384 8_3:+54484927 Msa1295950:CDS
GCTGTGTTGGATGCTTGTTG+AGG 0.710066 8_3:-54487605 None:intergenic
TTGGGATGTGAAGAGGCGGG+AGG 0.711668 8_3:-54486775 None:intergenic
AACCTTTCTAGAAGGCTCGG+TGG 0.715516 8_3:-54484151 None:intergenic
AATTGCATACACAATTAGAG+GGG 0.734543 8_3:-54487530 None:intergenic
TGCCAGGTAATGTACCAATG+GGG 0.757265 8_3:+54487507 Msa1295950:three_prime_UTR
AGGTTACAGAGAGTTCAAGG+GGG 0.779843 8_3:+54484725 Msa1295950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGAACAATATTTTTTTTA+AGG + chr8_3:54485526-54485545 Msa1295950:intron 10.0%
!! GAAATTGAATATTAATATAT+TGG + chr8_3:54485827-54485846 Msa1295950:intron 10.0%
!!! GTTATCATTTTTAAAATTTT+TGG + chr8_3:54485868-54485887 Msa1295950:intron 10.0%
!! AAATTTAATTAATTTAGCAA+CGG - chr8_3:54487108-54487127 None:intergenic 10.0%
!! AAATTGAAAATTGAAATCAA+CGG - chr8_3:54483849-54483868 None:intergenic 15.0%
!!! TTACTTTTTAAAATGAAAAC+AGG - chr8_3:54485428-54485447 None:intergenic 15.0%
!!! ATAAATTTAAGATAGAAACT+GGG - chr8_3:54487433-54487452 None:intergenic 15.0%
!!! AATAAATTTAAGATAGAAAC+TGG - chr8_3:54487434-54487453 None:intergenic 15.0%
!!! TTTTTGATTTTGCAGATTTT+TGG - chr8_3:54483764-54483783 None:intergenic 20.0%
!!! ATATACGATTTGGTATTTAA+TGG + chr8_3:54484015-54484034 Msa1295950:CDS 20.0%
!! ATCTTGATTTATCGAATAAT+AGG + chr8_3:54484329-54484348 Msa1295950:CDS 20.0%
!! AACAGGCAAATAAAAATAAT+TGG - chr8_3:54485411-54485430 None:intergenic 20.0%
!!! GTTGTTGTGATATTTTATAT+CGG + chr8_3:54485474-54485493 Msa1295950:intron 20.0%
!! AAAATATTGTTCATAAGTCA+AGG - chr8_3:54485521-54485540 None:intergenic 20.0%
!! AAAACAATGAAATATAGCAA+GGG - chr8_3:54485772-54485791 None:intergenic 20.0%
!! AAAAACAATGAAATATAGCA+AGG - chr8_3:54485773-54485792 None:intergenic 20.0%
!! TTGAATATTAATATATTGGC+TGG + chr8_3:54485831-54485850 Msa1295950:intron 20.0%
!!! TTAGTGATTTGTTCAATTTT+TGG + chr8_3:54485993-54486012 Msa1295950:intron 20.0%
!!! TTTTTCCTTGAATTGTATAT+TGG + chr8_3:54486080-54486099 Msa1295950:intron 20.0%
!!! ATTTTCCAATATACAATTCA+AGG - chr8_3:54486088-54486107 None:intergenic 20.0%
!!! TTCTAATTATGATGTTTCTA+CGG + chr8_3:54486146-54486165 Msa1295950:intron 20.0%
!!! TACTTGTATATTGGTTTTTT+TGG + chr8_3:54486277-54486296 Msa1295950:intron 20.0%
!!! ACTTGTATATTGGTTTTTTT+GGG + chr8_3:54486278-54486297 Msa1295950:intron 20.0%
!! GAACATGACATAATTTATAA+TGG - chr8_3:54486893-54486912 None:intergenic 20.0%
!!! GTTCGAGAAATTTTTTTAAA+AGG - chr8_3:54487243-54487262 None:intergenic 20.0%
!! TACTAATGTCTAACAAAAAA+TGG + chr8_3:54487557-54487576 Msa1295950:three_prime_UTR 20.0%
!!! TGGTTTTTTAATCTTCATTT+TGG + chr8_3:54487682-54487701 Msa1295950:three_prime_UTR 20.0%
!!! TTTTTAATCTTCATTTTGGA+CGG + chr8_3:54487686-54487705 Msa1295950:three_prime_UTR 20.0%
!!! TTTTGTTTTGTACTAGTTTA+TGG + chr8_3:54488064-54488083 Msa1295950:three_prime_UTR 20.0%
! AAACGAAAATTGAAGATTGA+AGG - chr8_3:54483883-54483902 None:intergenic 25.0%
!! GTTTGCTAATTGTTTATGTT+TGG + chr8_3:54485250-54485269 Msa1295950:intron 25.0%
!! GACCTTTTTGTATTAATTGT+TGG + chr8_3:54485704-54485723 Msa1295950:intron 25.0%
! CACCAACAATTAATACAAAA+AGG - chr8_3:54485709-54485728 None:intergenic 25.0%
! AAACAATGAAATATAGCAAG+GGG - chr8_3:54485771-54485790 None:intergenic 25.0%
!! AATATTAATATATTGGCTGG+TGG + chr8_3:54485834-54485853 Msa1295950:intron 25.0%
!! CAACTAAAGAAGCATAATAA+TGG - chr8_3:54485938-54485957 None:intergenic 25.0%
!!! ATTTGTTCAATTTTTGGTAC+TGG + chr8_3:54485999-54486018 Msa1295950:intron 25.0%
!! ATTTTATGTTGCAGATTACT+TGG + chr8_3:54486044-54486063 Msa1295950:intron 25.0%
! TAAAATCAAGCAAATAAGAC+AGG - chr8_3:54486259-54486278 None:intergenic 25.0%
!! GCTTGATTTTACTTGTATAT+TGG + chr8_3:54486268-54486287 Msa1295950:intron 25.0%
! ACATAATTTATAATGGTGTG+TGG - chr8_3:54486886-54486905 None:intergenic 25.0%
!!! AACAGTTTTAGATAGAACAA+TGG + chr8_3:54486956-54486975 Msa1295950:three_prime_UTR 25.0%
! ACAATATAAGGGGAAAATAT+TGG + chr8_3:54487464-54487483 Msa1295950:three_prime_UTR 25.0%
! AATGTCTAACAAAAAATGGA+TGG + chr8_3:54487561-54487580 Msa1295950:three_prime_UTR 25.0%
! ACGAATTCGATCAAAAAATA+TGG + chr8_3:54488010-54488029 Msa1295950:three_prime_UTR 25.0%
!!! TTTTGTACTAGTTTATGGTT+GGG + chr8_3:54488069-54488088 Msa1295950:three_prime_UTR 25.0%
TAAATAGAGAATGAAGGGAT+TGG - chr8_3:54483823-54483842 None:intergenic 30.0%
GGTTGTAAATAGAGAATGAA+GGG - chr8_3:54483828-54483847 None:intergenic 30.0%
ATCATAACGAAATATCCGTT+AGG + chr8_3:54483903-54483922 Msa1295950:five_prime_UTR 30.0%
TCATAACGAAATATCCGTTA+GGG + chr8_3:54483904-54483923 Msa1295950:five_prime_UTR 30.0%
ACGAATTTAACAAACCCTAA+CGG - chr8_3:54483921-54483940 None:intergenic 30.0%
! CGTTAAAATTCGTAGTGTTT+TGG + chr8_3:54483979-54483998 Msa1295950:five_prime_UTR 30.0%
! GTATTTAATGGATGAGATCT+GGG + chr8_3:54484027-54484046 Msa1295950:CDS 30.0%
AGTTGAATTTGTCTGATAAC+CGG + chr8_3:54484254-54484273 Msa1295950:CDS 30.0%
! GATTAAGTCGTTGAAGTATT+TGG + chr8_3:54484465-54484484 Msa1295950:CDS 30.0%
! GTTGAAGTATTTGGATAAGA+TGG + chr8_3:54484474-54484493 Msa1295950:CDS 30.0%
! ATAGTGATGATGATGAAGAT+GGG + chr8_3:54484896-54484915 Msa1295950:CDS 30.0%
!!! GATGTTTTCCATTTTTTGTG+TGG + chr8_3:54485380-54485399 Msa1295950:intron 30.0%
AGTCTACACTTCAAATTGTA+GGG - chr8_3:54485671-54485690 None:intergenic 30.0%
TAGTCTACACTTCAAATTGT+AGG - chr8_3:54485672-54485691 None:intergenic 30.0%
!! TGTATTAATTGTTGGTGTTG+TGG + chr8_3:54485712-54485731 Msa1295950:intron 30.0%
AAAACCAGTTCAAAGTCAAA+CGG - chr8_3:54486396-54486415 None:intergenic 30.0%
GTAGGATTACTTGTATCATA+TGG + chr8_3:54486459-54486478 Msa1295950:intron 30.0%
!! TTGAATTTTGCTGTAACTAC+AGG + chr8_3:54486591-54486610 Msa1295950:intron 30.0%
! TGTTCTATCTAAAACTGTTG+AGG - chr8_3:54486955-54486974 None:intergenic 30.0%
TAGATAGAACAATGGTTAGT+AGG + chr8_3:54486964-54486983 Msa1295950:intron 30.0%
TAGGAAACAAAATTGTGTGT+TGG + chr8_3:54487018-54487037 Msa1295950:intron 30.0%
AGGAAACAAAATTGTGTGTT+GGG + chr8_3:54487019-54487038 Msa1295950:intron 30.0%
GTCTATGTTTGCTTGTAAAA+AGG + chr8_3:54487176-54487195 Msa1295950:three_prime_UTR 30.0%
!!! AGTTTAATGAGAGCACTTTT+TGG + chr8_3:54487266-54487285 Msa1295950:three_prime_UTR 30.0%
TGTGGCAATAATTTATGAAC+TGG - chr8_3:54487393-54487412 None:intergenic 30.0%
! TTGAGCTTGATGACAATATA+AGG + chr8_3:54487452-54487471 Msa1295950:three_prime_UTR 30.0%
! TGAGCTTGATGACAATATAA+GGG + chr8_3:54487453-54487472 Msa1295950:three_prime_UTR 30.0%
AATTGCATACACAATTAGAG+GGG - chr8_3:54487533-54487552 None:intergenic 30.0%
CAATTGCATACACAATTAGA+GGG - chr8_3:54487534-54487553 None:intergenic 30.0%
ACAATTGCATACACAATTAG+AGG - chr8_3:54487535-54487554 None:intergenic 30.0%
AAGTTAATTCCATCTCTGAT+TGG - chr8_3:54487772-54487791 None:intergenic 30.0%
! TTTGCTCTTTTGATGTTATC+AGG + chr8_3:54487790-54487809 Msa1295950:three_prime_UTR 30.0%
! TGTGGATTTCTTTGATTTAG+TGG + chr8_3:54487888-54487907 Msa1295950:three_prime_UTR 30.0%
! GTGGATTTCTTTGATTTAGT+GGG + chr8_3:54487889-54487908 Msa1295950:three_prime_UTR 30.0%
ACCATAATATGCCTATATTG+TGG + chr8_3:54487950-54487969 Msa1295950:three_prime_UTR 30.0%
TCCACAATATAGGCATATTA+TGG - chr8_3:54487954-54487973 None:intergenic 30.0%
AAATCTGTGTTCCACAATAT+AGG - chr8_3:54487964-54487983 None:intergenic 30.0%
!! GTTTTGTACTAGTTTATGGT+TGG + chr8_3:54488068-54488087 Msa1295950:three_prime_UTR 30.0%
CGGTTGTAAATAGAGAATGA+AGG - chr8_3:54483829-54483848 None:intergenic 35.0%
CGTGTATGAGATATACGATT+TGG + chr8_3:54484005-54484024 Msa1295950:exon 35.0%
! GGTATTTAATGGATGAGATC+TGG + chr8_3:54484026-54484045 Msa1295950:CDS 35.0%
TAATCCTTAACCCTAGTAAC+AGG - chr8_3:54484424-54484443 None:intergenic 35.0%
GGTTAAGGATTATCGATCTA+GGG + chr8_3:54484432-54484451 Msa1295950:CDS 35.0%
!! GATTATCGATCTAGGGTTTT+TGG + chr8_3:54484439-54484458 Msa1295950:CDS 35.0%
! GGATGATAATGAGGATAATG+AGG + chr8_3:54484540-54484559 Msa1295950:CDS 35.0%
! TGATAATGAGGATAATGAGG+AGG + chr8_3:54484543-54484562 Msa1295950:CDS 35.0%
! GATAGTGATGATGATGAAGA+TGG + chr8_3:54484895-54484914 Msa1295950:CDS 35.0%
! TAGTGATGATGATGAAGATG+GGG + chr8_3:54484897-54484916 Msa1295950:CDS 35.0%
ATGAGGTGGATAATGATGAA+GGG + chr8_3:54484956-54484975 Msa1295950:CDS 35.0%
! AAAAACAAGAGCTTCTGAGA+AGG - chr8_3:54485193-54485212 None:intergenic 35.0%
TGGTTAGACCACACAAAAAA+TGG - chr8_3:54485391-54485410 None:intergenic 35.0%
TCAAATTGTAGGGTTGTATG+AGG - chr8_3:54485661-54485680 None:intergenic 35.0%
TGATGTGATGATATGTTCCT+TGG + chr8_3:54485956-54485975 Msa1295950:intron 35.0%
!!! TGTTCAATTTTTGGTACTGG+AGG + chr8_3:54486002-54486021 Msa1295950:intron 35.0%
! ATGTTTGTGATTTGCAAGGT+TGG + chr8_3:54486171-54486190 Msa1295950:intron 35.0%
! TGTTTGTGATTTGCAAGGTT+GGG + chr8_3:54486172-54486191 Msa1295950:intron 35.0%
!!! TTGAGTATCTGTTGTTTTCG+TGG + chr8_3:54486213-54486232 Msa1295950:intron 35.0%
TGAAGCAATCACCATTTGTT+TGG + chr8_3:54486425-54486444 Msa1295950:intron 35.0%
ATATTCACCAGCCAAACAAA+TGG - chr8_3:54486439-54486458 None:intergenic 35.0%
!! AATTTTGCTGTAACTACAGG+AGG + chr8_3:54486594-54486613 Msa1295950:intron 35.0%
TTATAATGGTGTGTGGTCAA+TGG - chr8_3:54486879-54486898 None:intergenic 35.0%
TAGAACAATGGTTAGTAGGT+AGG + chr8_3:54486968-54486987 Msa1295950:intron 35.0%
TGTTGAACAGAGGACATATT+AGG + chr8_3:54486999-54487018 Msa1295950:intron 35.0%
AAACAAAATTGTGTGTTGGG+CGG + chr8_3:54487022-54487041 Msa1295950:intron 35.0%
CTATGTGTATGTAAAGCAGA+GGG - chr8_3:54487085-54487104 None:intergenic 35.0%
TTTGCTTGTAAAAAGGAGCT+TGG + chr8_3:54487183-54487202 Msa1295950:three_prime_UTR 35.0%
!!! TTAATGAGAGCACTTTTTGG+CGG + chr8_3:54487269-54487288 Msa1295950:three_prime_UTR 35.0%
CGGCAGAAAAAGGAAAAAAA+AGG + chr8_3:54487289-54487308 Msa1295950:three_prime_UTR 35.0%
ATGATTCCTATGAAGCAAGT+TGG + chr8_3:54487347-54487366 Msa1295950:three_prime_UTR 35.0%
TGATTCCTATGAAGCAAGTT+GGG + chr8_3:54487348-54487367 Msa1295950:three_prime_UTR 35.0%
ATTATTGCCACATTGTTACG+TGG + chr8_3:54487401-54487420 Msa1295950:three_prime_UTR 35.0%
GATAAATCCACGTAACAATG+TGG - chr8_3:54487411-54487430 None:intergenic 35.0%
! GAGCTTGATGACAATATAAG+GGG + chr8_3:54487454-54487473 Msa1295950:three_prime_UTR 35.0%
TGGCATTGTGACTATTAAGA+CGG - chr8_3:54487492-54487511 None:intergenic 35.0%
ATTGATGGAAAATGCTGTGT+TGG - chr8_3:54487621-54487640 None:intergenic 35.0%
! TTTAAGACATGCACGATTGA+TGG - chr8_3:54487636-54487655 None:intergenic 35.0%
! TAAATTTTCATCTAGCCACG+TGG + chr8_3:54487652-54487671 Msa1295950:three_prime_UTR 35.0%
! AAATTTTCATCTAGCCACGT+GGG + chr8_3:54487653-54487672 Msa1295950:three_prime_UTR 35.0%
! GATTTCTTTGATTTAGTGGG+AGG + chr8_3:54487892-54487911 Msa1295950:three_prime_UTR 35.0%
ACGTCCTTGTACACACTTAA+CGG - chr8_3:54484125-54484144 None:intergenic 40.0%
!! GATTCTGGAACCTTTCTAGA+AGG - chr8_3:54484162-54484181 None:intergenic 40.0%
TCGAAAGATGCTGAAGATTC+TGG - chr8_3:54484177-54484196 None:intergenic 40.0%
CATCTTTCGATTGCAAACGT+TGG + chr8_3:54484187-54484206 Msa1295950:CDS 40.0%
! GTTGGAGTATTTAGTCGAAG+CGG + chr8_3:54484288-54484307 Msa1295950:CDS 40.0%
! TTGGAGTATTTAGTCGAAGC+GGG + chr8_3:54484289-54484308 Msa1295950:CDS 40.0%
TGTATGAGTGTCCTGTTACT+AGG + chr8_3:54484410-54484429 Msa1295950:CDS 40.0%
GTATGAGTGTCCTGTTACTA+GGG + chr8_3:54484411-54484430 Msa1295950:CDS 40.0%
GGGTTAAGGATTATCGATCT+AGG + chr8_3:54484431-54484450 Msa1295950:CDS 40.0%
TTTGGATAAGATGGATGCTG+AGG + chr8_3:54484483-54484502 Msa1295950:CDS 40.0%
! TGAGGAAGAGGATGATAATG+AGG + chr8_3:54484531-54484550 Msa1295950:CDS 40.0%
GGAGGATGATGAAAATGATG+AGG + chr8_3:54484561-54484580 Msa1295950:CDS 40.0%
GGATGATGAAAATGATGAGG+AGG + chr8_3:54484564-54484583 Msa1295950:CDS 40.0%
AAATGATGAGGAGGAAGATG+AGG + chr8_3:54484573-54484592 Msa1295950:CDS 40.0%
! GATGATGATGATGAGGATTC+TGG + chr8_3:54484811-54484830 Msa1295950:CDS 40.0%
GATGAGGTGGATAATGATGA+AGG + chr8_3:54484955-54484974 Msa1295950:CDS 40.0%
TGAGGTGGATAATGATGAAG+GGG + chr8_3:54484957-54484976 Msa1295950:CDS 40.0%
GATGGAGATGAAGATGACAA+TGG + chr8_3:54485060-54485079 Msa1295950:CDS 40.0%
TTGTCAGATTGCTGAAGAGA+AGG + chr8_3:54485288-54485307 Msa1295950:intron 40.0%
! GAAGAGAAGGCGATGATTTT+TGG + chr8_3:54485301-54485320 Msa1295950:CDS 40.0%
ATGTTCCTTGGTCATGTACA+CGG + chr8_3:54485968-54485987 Msa1295950:intron 40.0%
TAATTCCGTGTACATGACCA+AGG - chr8_3:54485976-54485995 None:intergenic 40.0%
GTAGAGTTGTTGTAGCAACA+TGG + chr8_3:54486114-54486133 Msa1295950:intron 40.0%
! GGCTATGTTTGTGATTTGCA+AGG + chr8_3:54486167-54486186 Msa1295950:intron 40.0%
!!! TATCTGTTGTTTTCGTGGAC+TGG + chr8_3:54486218-54486237 Msa1295950:intron 40.0%
TGTTTGGCTGGTGAATATGT+AGG + chr8_3:54486441-54486460 Msa1295950:intron 40.0%
TAACTACAGGAGGAAGACTT+TGG + chr8_3:54486604-54486623 Msa1295950:intron 40.0%
!! GATGATGGAGAAAACGAAGA+TGG + chr8_3:54486691-54486710 Msa1295950:CDS 40.0%
! CAATGATGATGAAGCTGATG+AGG + chr8_3:54486810-54486829 Msa1295950:CDS 40.0%
GTCATGTTCATGTTCTGTGA+TGG + chr8_3:54486904-54486923 Msa1295950:three_prime_UTR 40.0%
GTTTCTCTGCTTCCATTACT+TGG - chr8_3:54486933-54486952 None:intergenic 40.0%
GGAATTTAGCTGTTGAACAG+AGG + chr8_3:54486989-54487008 Msa1295950:intron 40.0%
GCTATGTGTATGTAAAGCAG+AGG - chr8_3:54487086-54487105 None:intergenic 40.0%
CTTGTAAAAAGGAGCTTGGT+TGG + chr8_3:54487187-54487206 Msa1295950:three_prime_UTR 40.0%
AACTGGCCACGTCAATATAA+TGG - chr8_3:54487376-54487395 None:intergenic 40.0%
GGCATTGTGACTATTAAGAC+GGG - chr8_3:54487491-54487510 None:intergenic 40.0%
GTCTTAATAGTCACAATGCC+AGG + chr8_3:54487491-54487510 Msa1295950:three_prime_UTR 40.0%
AATGCCAGGTAATGTACCAA+TGG + chr8_3:54487505-54487524 Msa1295950:three_prime_UTR 40.0%
ATGCCAGGTAATGTACCAAT+GGG + chr8_3:54487506-54487525 Msa1295950:three_prime_UTR 40.0%
AAAAACCAAACTAACCCACG+TGG - chr8_3:54487670-54487689 None:intergenic 40.0%
! GTTAACATCAAGCTAGCTTG+AGG + chr8_3:54487865-54487884 Msa1295950:three_prime_UTR 40.0%
TTGTTCATAAGCACTCCTTG+AGG + chr8_3:54487917-54487936 Msa1295950:three_prime_UTR 40.0%
TGTTCATAAGCACTCCTTGA+GGG + chr8_3:54487918-54487937 Msa1295950:three_prime_UTR 40.0%
GCACGAACGTTAACACTTGA+CGG + chr8_3:54484097-54484116 Msa1295950:CDS 45.0%
! TGGAACCTTTCTAGAAGGCT+CGG - chr8_3:54484157-54484176 None:intergenic 45.0%
! AAACGTTGGTGTTTCGTCGT+TGG + chr8_3:54484201-54484220 Msa1295950:CDS 45.0%
!! TTTTGAAGATCTTGCGCCGT+TGG + chr8_3:54484360-54484379 Msa1295950:CDS 45.0%
GTGTCCTGTTACTAGGGTTA+AGG + chr8_3:54484417-54484436 Msa1295950:CDS 45.0%
TGGATGCTGAGGAAAATGAG+AGG + chr8_3:54484494-54484513 Msa1295950:CDS 45.0%
TCTTCCTCATCATCACTCTC+CGG - chr8_3:54484520-54484539 None:intergenic 45.0%
! GGGAGGAAGATCGAGTTTTT+GGG + chr8_3:54484626-54484645 Msa1295950:CDS 45.0%
! GGAGGAAGATCGAGTTTTTG+GGG + chr8_3:54484627-54484646 Msa1295950:CDS 45.0%
!!! GAGTTTTTGGGGTGGAGAAT+GGG + chr8_3:54484638-54484657 Msa1295950:CDS 45.0%
TGGAGTTGTTGATGCTGATG+AGG + chr8_3:54484678-54484697 Msa1295950:CDS 45.0%
TGTTGATGCTGATGAGGATG+AGG + chr8_3:54484684-54484703 Msa1295950:CDS 45.0%
AGGAGGTTACAGAGAGTTCA+AGG + chr8_3:54484722-54484741 Msa1295950:CDS 45.0%
GGAGGTTACAGAGAGTTCAA+GGG + chr8_3:54484723-54484742 Msa1295950:CDS 45.0%
GAGGTTACAGAGAGTTCAAG+GGG + chr8_3:54484724-54484743 Msa1295950:CDS 45.0%
AGGTTACAGAGAGTTCAAGG+GGG + chr8_3:54484725-54484744 Msa1295950:CDS 45.0%
! GAATGGGTTTCATGTTGAGC+CGG + chr8_3:54484774-54484793 Msa1295950:CDS 45.0%
TCATCCTCCTCAACATCAAC+CGG - chr8_3:54484796-54484815 None:intergenic 45.0%
! TGAGGAGGATGATGATGATG+AGG + chr8_3:54484804-54484823 Msa1295950:CDS 45.0%
! TGATGATGAGGATTCTGGAG+AGG + chr8_3:54484816-54484835 Msa1295950:CDS 45.0%
! TTCTGGAGAGGAGATTGATG+AGG + chr8_3:54484828-54484847 Msa1295950:CDS 45.0%
AGAGGAGATTGATGAGGAAG+AGG + chr8_3:54484834-54484853 Msa1295950:CDS 45.0%
GAGGAGATTGATGAGGAAGA+GGG + chr8_3:54484835-54484854 Msa1295950:CDS 45.0%
AGGAGATTGATGAGGAAGAG+GGG + chr8_3:54484836-54484855 Msa1295950:CDS 45.0%
GGATGATGAGGATGTTGTTG+AGG + chr8_3:54484858-54484877 Msa1295950:CDS 45.0%
! AGTACTGAAGGTGAGATCGA+TGG + chr8_3:54485018-54485037 Msa1295950:CDS 45.0%
GTACTGAAGGTGAGATCGAT+GGG + chr8_3:54485019-54485038 Msa1295950:CDS 45.0%
GAAGATGACAATGGAGAGAC+CGG + chr8_3:54485069-54485088 Msa1295950:CDS 45.0%
GATGAAGACGACGATGATGA+TGG + chr8_3:54485120-54485139 Msa1295950:CDS 45.0%
!! GATGATGGAGATGATGACGA+TGG + chr8_3:54485135-54485154 Msa1295950:CDS 45.0%
TACTTTCACCCACCTATGCA+TGG + chr8_3:54485450-54485469 Msa1295950:intron 45.0%
ATCACAACAACGCCATGCAT+AGG - chr8_3:54485465-54485484 None:intergenic 45.0%
TGTAGGGTTGTATGAGGCAA+AGG - chr8_3:54485655-54485674 None:intergenic 45.0%
TTGTGGAGCTTGTACAACTG+AGG + chr8_3:54485729-54485748 Msa1295950:intron 45.0%
ATATAGCAAGGGGACTAGAG+AGG - chr8_3:54485761-54485780 None:intergenic 45.0%
!! TGTGCCGTTTGACTTTGAAC+TGG + chr8_3:54486389-54486408 Msa1295950:intron 45.0%
GCAATCACCATTTGTTTGGC+TGG + chr8_3:54486429-54486448 Msa1295950:intron 45.0%
!! AGACTTTGGTGCTGGATATC+TGG + chr8_3:54486618-54486637 Msa1295950:CDS 45.0%
CAGGATGATGCTCTCAATGA+TGG + chr8_3:54486655-54486674 Msa1295950:CDS 45.0%
CGAAGATGGTGAAGAAGAAG+AGG + chr8_3:54486705-54486724 Msa1295950:CDS 45.0%
! TGATGACGATGATGCTCAAG+AGG + chr8_3:54486747-54486766 Msa1295950:CDS 45.0%
TTCACATCCCAAGAGGAAGA+GGG + chr8_3:54486786-54486805 Msa1295950:CDS 45.0%
TCATTGTCCCTCTTCCTCTT+GGG - chr8_3:54486796-54486815 None:intergenic 45.0%
ATCATTGTCCCTCTTCCTCT+TGG - chr8_3:54486797-54486816 None:intergenic 45.0%
CTGTGATGGCTTCCAAGTAA+TGG + chr8_3:54486918-54486937 Msa1295950:three_prime_UTR 45.0%
!! CTTGGTTGGTGATTCTTGGA+GGG + chr8_3:54487201-54487220 Msa1295950:three_prime_UTR 45.0%
TGATTCTTGGAGGGAAGCAA+AGG + chr8_3:54487210-54487229 Msa1295950:three_prime_UTR 45.0%
GATTCTTGGAGGGAAGCAAA+GGG + chr8_3:54487211-54487230 Msa1295950:three_prime_UTR 45.0%
!! CACTTTTTGGCGGCAGAAAA+AGG + chr8_3:54487279-54487298 Msa1295950:three_prime_UTR 45.0%
!! TGGGTGCCATTATATTGACG+TGG + chr8_3:54487367-54487386 Msa1295950:three_prime_UTR 45.0%
TGCCAGGTAATGTACCAATG+GGG + chr8_3:54487507-54487526 Msa1295950:three_prime_UTR 45.0%
AGAGCTAAGCCAATCAGAGA+TGG + chr8_3:54487760-54487779 Msa1295950:three_prime_UTR 45.0%
! ATGGTAATGTGTCACCCTCA+AGG - chr8_3:54487935-54487954 None:intergenic 45.0%
!!! AAATTAATTAAATTTTCAAA+TGG + chr8_3:54487113-54487132 Msa1295950:intron 5.0%
TGAGATCTGGGAGAAAGCTG+TGG + chr8_3:54484039-54484058 Msa1295950:CDS 50.0%
CTGGGAGAAAGCTGTGGAAA+CGG + chr8_3:54484045-54484064 Msa1295950:CDS 50.0%
! AACCTTTCTAGAAGGCTCGG+TGG - chr8_3:54484154-54484173 None:intergenic 50.0%
TTGTCTGATAACCGGATCGC+TGG + chr8_3:54484262-54484281 Msa1295950:CDS 50.0%
! GCAGGTGAAGCTAGTTTCGT+TGG + chr8_3:54484384-54484403 Msa1295950:CDS 50.0%
TGCTGAGGAAAATGAGAGGC+CGG + chr8_3:54484498-54484517 Msa1295950:CDS 50.0%
! GGAGAGTGATGATGAGGAAG+AGG + chr8_3:54484519-54484538 Msa1295950:CDS 50.0%
TGATGAGGAGGAAGATGAGG+AGG + chr8_3:54484576-54484595 Msa1295950:CDS 50.0%
! GGGGAGGAAGATCGAGTTTT+TGG + chr8_3:54484625-54484644 Msa1295950:CDS 50.0%
!! GGAAGATCGAGTTTTTGGGG+TGG + chr8_3:54484630-54484649 Msa1295950:CDS 50.0%
!!! CGAGTTTTTGGGGTGGAGAA+TGG + chr8_3:54484637-54484656 Msa1295950:CDS 50.0%
GTGGAGAATGGGCATAGTGA+AGG + chr8_3:54484649-54484668 Msa1295950:CDS 50.0%
!! GGGCATAGTGAAGGTGTTGA+TGG + chr8_3:54484658-54484677 Msa1295950:CDS 50.0%
TGAGGAGAGTGATGCTGATG+AGG + chr8_3:54484702-54484721 Msa1295950:CDS 50.0%
TTACAGAGAGTTCAAGGGGG+AGG + chr8_3:54484728-54484747 Msa1295950:CDS 50.0%
TACAGAGAGTTCAAGGGGGA+GGG + chr8_3:54484729-54484748 Msa1295950:CDS 50.0%
AGTTCAAGGGGGAGGGTTAA+TGG + chr8_3:54484736-54484755 Msa1295950:CDS 50.0%
GTTCAAGGGGGAGGGTTAAT+GGG + chr8_3:54484737-54484756 Msa1295950:CDS 50.0%
TTCAAGGGGGAGGGTTAATG+GGG + chr8_3:54484738-54484757 Msa1295950:CDS 50.0%
GGTTAATGGGGTGAGTCATC+AGG + chr8_3:54484750-54484769 Msa1295950:CDS 50.0%
GGGTGAGTCATCAGGAGAAT+GGG + chr8_3:54484758-54484777 Msa1295950:CDS 50.0%
! TGTTGAGCCGGTTGATGTTG+AGG + chr8_3:54484786-54484805 Msa1295950:CDS 50.0%
GGAGATTGATGAGGAAGAGG+GGG + chr8_3:54484837-54484856 Msa1295950:CDS 50.0%
AGATGGGGTTGAGTTTGACG+AGG + chr8_3:54484912-54484931 Msa1295950:CDS 50.0%
! TGATGACGAGGACGATGATG+AGG + chr8_3:54484939-54484958 Msa1295950:CDS 50.0%
! TGAAGGGGATTTTGCTGAGC+CGG + chr8_3:54484972-54484991 Msa1295950:CDS 50.0%
!! AACCGTCCAGAAGTACTCTC+CGG - chr8_3:54484994-54485013 None:intergenic 50.0%
CAACAACGCCATGCATAGGT+GGG - chr8_3:54485461-54485480 None:intergenic 50.0%
ACAACAACGCCATGCATAGG+TGG - chr8_3:54485462-54485481 None:intergenic 50.0%
GAGCTTGTACAACTGAGGCT+TGG + chr8_3:54485734-54485753 Msa1295950:intron 50.0%
! GGATATCTGGTTCAGCCAGT+TGG + chr8_3:54486631-54486650 Msa1295950:CDS 50.0%
! AGAGCATCATCCTGTCCAAC+TGG - chr8_3:54486649-54486668 None:intergenic 50.0%
CTTCCTCTTGGGATGTGAAG+AGG - chr8_3:54486785-54486804 None:intergenic 50.0%
CTTCACATCCCAAGAGGAAG+AGG + chr8_3:54486785-54486804 Msa1295950:CDS 50.0%
GGTCAATGGTGCTTCTTGGA+TGG - chr8_3:54486865-54486884 None:intergenic 50.0%
GTGTGGTCAATGGTGCTTCT+TGG - chr8_3:54486869-54486888 None:intergenic 50.0%
ACCTGCATTGAGCACATGAG+CGG - chr8_3:54487158-54487177 None:intergenic 50.0%
!! GGAGCTTGGTTGGTGATTCT+TGG + chr8_3:54487197-54487216 Msa1295950:three_prime_UTR 50.0%
!! GCTTGGTTGGTGATTCTTGG+AGG + chr8_3:54487200-54487219 Msa1295950:three_prime_UTR 50.0%
! TGGCACCCAACTTGCTTCAT+AGG - chr8_3:54487356-54487375 None:intergenic 50.0%
! GCTGTGTTGGATGCTTGTTG+AGG - chr8_3:54487608-54487627 None:intergenic 50.0%
!! TCTAGCCACGTGGGTTAGTT+TGG + chr8_3:54487662-54487681 Msa1295950:three_prime_UTR 50.0%
! CATCAAGCTAGCTTGAGGTG+TGG + chr8_3:54487870-54487889 Msa1295950:three_prime_UTR 50.0%
GCTGTGGAAACGGCGTTAGA+AGG + chr8_3:54484055-54484074 Msa1295950:CDS 55.0%
GGCGCCGTTAAGTGTGTACA+AGG + chr8_3:54484118-54484137 Msa1295950:CDS 55.0%
!! CTTTCTAGAAGGCTCGGTGG+TGG - chr8_3:54484151-54484170 None:intergenic 55.0%
! CACCACCGAGCCTTCTAGAA+AGG + chr8_3:54484149-54484168 Msa1295950:CDS 55.0%
TTCTGCAAACTCCGCAGCCT+CGG - chr8_3:54484235-54484254 None:intergenic 55.0%
TCTGATAACCGGATCGCTGG+AGG + chr8_3:54484265-54484284 Msa1295950:CDS 55.0%
CTGATAACCGGATCGCTGGA+GGG + chr8_3:54484266-54484285 Msa1295950:CDS 55.0%
! ACTAGCTTCACCTGCGCCAA+CGG - chr8_3:54484379-54484398 None:intergenic 55.0%
GGAGGAAGATGAGGAGGATC+CGG + chr8_3:54484582-54484601 Msa1295950:CDS 55.0%
GAGGAAGATGAGGAGGATCC+GGG + chr8_3:54484583-54484602 Msa1295950:CDS 55.0%
AGGAAGATGAGGAGGATCCG+GGG + chr8_3:54484584-54484603 Msa1295950:CDS 55.0%
GGAGCGGTGAGATTGATGGA+GGG + chr8_3:54484605-54484624 Msa1295950:CDS 55.0%
GAGCGGTGAGATTGATGGAG+GGG + chr8_3:54484606-54484625 Msa1295950:CDS 55.0%
GGAGAGTGATGCTGATGAGG+AGG + chr8_3:54484705-54484724 Msa1295950:CDS 55.0%
GGGGTGAGTCATCAGGAGAA+TGG + chr8_3:54484757-54484776 Msa1295950:CDS 55.0%
! TGAGCCGGTTGATGTTGAGG+AGG + chr8_3:54484789-54484808 Msa1295950:CDS 55.0%
TGAGGAAGAGGGGGATGATG+AGG + chr8_3:54484846-54484865 Msa1295950:CDS 55.0%
! TGACGAGGACGATGATGACG+AGG + chr8_3:54484927-54484946 Msa1295950:CDS 55.0%
TGACGAGGACGATGATGAGG+TGG + chr8_3:54484942-54484961 Msa1295950:CDS 55.0%
!! AGCCGGAGAGTACTTCTGGA+CGG + chr8_3:54484989-54485008 Msa1295950:CDS 55.0%
!! GGAGAGTACTTCTGGACGGT+TGG + chr8_3:54484993-54485012 Msa1295950:CDS 55.0%
!! GGACGGTTGGTGAGTACTGA+AGG + chr8_3:54485006-54485025 Msa1295950:CDS 55.0%
AGATCGATGGGCACGAGCAA+GGG + chr8_3:54485031-54485050 Msa1295950:CDS 55.0%
CAATGGAGAGACCGGTGAAG+AGG + chr8_3:54485077-54485096 Msa1295950:CDS 55.0%
AGAGACCGGTGAAGAGGAGA+TGG + chr8_3:54485083-54485102 Msa1295950:CDS 55.0%
AACCGCCATCTCCTCTTCAC+CGG - chr8_3:54485091-54485110 None:intergenic 55.0%
! CAGGAGGAAGACTTTGGTGC+TGG + chr8_3:54486610-54486629 Msa1295950:intron 55.0%
! TCTGGTTCAGCCAGTTGGAC+AGG + chr8_3:54486636-54486655 Msa1295950:CDS 55.0%
GGAGCTGCTGACATCGATGA+TGG + chr8_3:54486676-54486695 Msa1295950:CDS 55.0%
CTCTTGGGATGTGAAGAGGC+GGG - chr8_3:54486781-54486800 None:intergenic 55.0%
CCTCTTGGGATGTGAAGAGG+CGG - chr8_3:54486782-54486801 None:intergenic 55.0%
ACCGCTCATGTGCTCAATGC+AGG + chr8_3:54487154-54487173 Msa1295950:intron 55.0%
GGCCCCATTGGTACATTACC+TGG - chr8_3:54487512-54487531 None:intergenic 55.0%
CACAATTAGAGGGGCCCCAT+TGG - chr8_3:54487524-54487543 None:intergenic 55.0%
TCTGCAAACTCCGCAGCCTC+GGG - chr8_3:54484234-54484253 None:intergenic 60.0%
TAACCGGATCGCTGGAGGGT+TGG + chr8_3:54484270-54484289 Msa1295950:CDS 60.0%
ACTCCAACCCTCCAGCGATC+CGG - chr8_3:54484276-54484295 None:intergenic 60.0%
! GAGGCCGGAGAGTGATGATG+AGG + chr8_3:54484513-54484532 Msa1295950:CDS 60.0%
CCATCAATCTCACCGCTCCC+CGG - chr8_3:54484604-54484623 None:intergenic 60.0%
GGGAGCGGTGAGATTGATGG+AGG + chr8_3:54484604-54484623 Msa1295950:CDS 60.0%
CGGTGAGATTGATGGAGGGG+AGG + chr8_3:54484609-54484628 Msa1295950:CDS 60.0%
!! GCTGAGCCGGAGAGTACTTC+TGG + chr8_3:54484985-54485004 Msa1295950:CDS 60.0%
GAGATCGATGGGCACGAGCA+AGG + chr8_3:54485030-54485049 Msa1295950:CDS 60.0%
GATCGATGGGCACGAGCAAG+GGG + chr8_3:54485032-54485051 Msa1295950:CDS 60.0%
CACGAGCAAGGGGAGGAAGA+TGG + chr8_3:54485042-54485061 Msa1295950:CDS 60.0%
GACCGGTGAAGAGGAGATGG+CGG + chr8_3:54485086-54485105 Msa1295950:CDS 60.0%
TTGGGATGTGAAGAGGCGGG+AGG - chr8_3:54486778-54486797 None:intergenic 60.0%
CCGCCTCTTCACATCCCAAG+AGG + chr8_3:54486779-54486798 Msa1295950:CDS 60.0%
AGTTTGCGTGACGCACACGC+AGG + chr8_3:54487825-54487844 Msa1295950:three_prime_UTR 60.0%
CGTCGTTGGAGCAGTTCCCG+AGG + chr8_3:54484215-54484234 Msa1295950:CDS 65.0%
TGGAGCAGTTCCCGAGGCTG+CGG + chr8_3:54484221-54484240 Msa1295950:CDS 65.0%
AGATCTTGCGCCGTTGGCGC+AGG + chr8_3:54484366-54484385 Msa1295950:CDS 65.0%
GATGAGGAGGATCCGGGGAG+CGG + chr8_3:54484589-54484608 Msa1295950:CDS 65.0%
CCGGGGAGCGGTGAGATTGA+TGG + chr8_3:54484601-54484620 Msa1295950:CDS 65.0%
CGATGGGCACGAGCAAGGGG+AGG + chr8_3:54485035-54485054 Msa1295950:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 54483719 54488093 54483719 ID=Msa1295950;Name=Msa1295950
chr8_3 mRNA 54483719 54488093 54483719 ID=Msa1295950-mRNA-1;Parent=Msa1295950;Name=Msa1295950-mRNA-1;_AED=0.17;_eAED=0.17;_QI=291|0.66|0.75|1|0.66|0.5|4|1013|503
chr8_3 exon 54483719 54485179 54483719 ID=Msa1295950-mRNA-1:exon:15657;Parent=Msa1295950-mRNA-1
chr8_3 exon 54485295 54485366 54485295 ID=Msa1295950-mRNA-1:exon:15658;Parent=Msa1295950-mRNA-1
chr8_3 exon 54486613 54486977 54486613 ID=Msa1295950-mRNA-1:exon:15659;Parent=Msa1295950-mRNA-1
chr8_3 exon 54487176 54488093 54487176 ID=Msa1295950-mRNA-1:exon:15660;Parent=Msa1295950-mRNA-1
chr8_3 five_prime_UTR 54483719 54484009 54483719 ID=Msa1295950-mRNA-1:five_prime_utr;Parent=Msa1295950-mRNA-1
chr8_3 CDS 54484010 54485179 54484010 ID=Msa1295950-mRNA-1:cds;Parent=Msa1295950-mRNA-1
chr8_3 CDS 54485295 54485366 54485295 ID=Msa1295950-mRNA-1:cds;Parent=Msa1295950-mRNA-1
chr8_3 CDS 54486613 54486882 54486613 ID=Msa1295950-mRNA-1:cds;Parent=Msa1295950-mRNA-1
chr8_3 three_prime_UTR 54486883 54486977 54486883 ID=Msa1295950-mRNA-1:three_prime_utr;Parent=Msa1295950-mRNA-1
chr8_3 three_prime_UTR 54487176 54488093 54487176 ID=Msa1295950-mRNA-1:three_prime_utr;Parent=Msa1295950-mRNA-1
Gene Sequence

>Msa1295950

ATGAGATATACGATTTGGTATTTAATGGATGAGATCTGGGAGAAAGCTGTGGAAACGGCGTTAGAAGGAGAGAAAGATCATGTTTCAGCACGAACGTTAACACTTGACGGCGCCGTTAAGTGTGTACAAGGACGTTTACCACCACCGAGCCTTCTAGAAAGGTTCCAGAATCTTCAGCATCTTTCGATTGCAAACGTTGGTGTTTCGTCGTTGGAGCAGTTCCCGAGGCTGCGGAGTTTGCAGAAGTTGAATTTGTCTGATAACCGGATCGCTGGAGGGTTGGAGTATTTAGTCGAAGCGGGTCTCGATTCGCTTCGAGATCTTGATTTATCGAATAATAGGATTCAGAATTTTGAAGATCTTGCGCCGTTGGCGCAGGTGAAGCTAGTTTCGTTGGATCTGTATGAGTGTCCTGTTACTAGGGTTAAGGATTATCGATCTAGGGTTTTTGGTTTGATTAAGTCGTTGAAGTATTTGGATAAGATGGATGCTGAGGAAAATGAGAGGCCGGAGAGTGATGATGAGGAAGAGGATGATAATGAGGATAATGAGGAGGATGATGAAAATGATGAGGAGGAAGATGAGGAGGATCCGGGGAGCGGTGAGATTGATGGAGGGGAGGAAGATCGAGTTTTTGGGGTGGAGAATGGGCATAGTGAAGGTGTTGATGGAGTTGTTGATGCTGATGAGGATGAGGAGAGTGATGCTGATGAGGAGGTTACAGAGAGTTCAAGGGGGAGGGTTAATGGGGTGAGTCATCAGGAGAATGGGTTTCATGTTGAGCCGGTTGATGTTGAGGAGGATGATGATGATGAGGATTCTGGAGAGGAGATTGATGAGGAAGAGGGGGATGATGAGGATGTTGTTGAGGTGAACGAGATTGATGATAGTGATGATGATGAAGATGGGGTTGAGTTTGACGAGGACGATGATGACGAGGACGATGATGAGGTGGATAATGATGAAGGGGATTTTGCTGAGCCGGAGAGTACTTCTGGACGGTTGGTGAGTACTGAAGGTGAGATCGATGGGCACGAGCAAGGGGAGGAAGATGGAGATGAAGATGACAATGGAGAGACCGGTGAAGAGGAGATGGCGGTTGAAGAAGAAGATGAAGACGACGATGATGATGGAGATGATGACGATGGAGAGTTTGAAGATGACGATGAAATTGCTGAAGAGAAGGCGATGATTTTTGGTTCTCTTGATATGATGATGTTTGCTAACTTGATTAGAACTTTTGAGGAAGACTTTGGTGCTGGATATCTGGTTCAGCCAGTTGGACAGGATGATGCTCTCAATGATGGAGCTGCTGACATCGATGATGGAGAAAACGAAGATGGTGAAGAAGAAGAGGAAGTTGATGATGATGATGTTGATGACGATGATGCTCAAGAGGTGTTGCCTCCCGCCTCTTCACATCCCAAGAGGAAGAGGGACAATGATGATGAAGCTGATGAGGACGATGAAGATGAAGCAGCATTCACAAAGCCATCCAAGAAGCACCATTGA
Protein sequence

>Msa1295950

MRYTIWYLMDEIWEKAVETALEGEKDHVSARTLTLDGAVKCVQGRLPPPSLLERFQNLQHLSIANVGVSSLEQFPRLRSLQKLNLSDNRIAGGLEYLVEAGLDSLRDLDLSNNRIQNFEDLAPLAQVKLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDAEENERPESDDEEEDDNEDNEEDDENDEEEDEEDPGSGEIDGGEEDRVFGVENGHSEGVDGVVDADEDEESDADEEVTESSRGRVNGVSHQENGFHVEPVDVEEDDDDEDSGEEIDEEEGDDEDVVEVNEIDDSDDDEDGVEFDEDDDDEDDDEVDNDEGDFAEPESTSGRLVSTEGEIDGHEQGEEDGDEDDNGETGEEEMAVEEEDEDDDDDGDDDDGEFEDDDEIAEEKAMIFGSLDMMMFANLIRTFEEDFGAGYLVQPVGQDDALNDGAADIDDGENEDGEEEEEVDDDDVDDDDAQEVLPPASSHPKRKRDNDDEADEDDEDEAAFTKPSKKHH*