AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861090 MtrunA17_Chr5g0440841 85.390 308 6 1 1 308 1 269 0.0 515
Msa0861090 MtrunA17_Chr3g0080341 37.330 367 126 8 1 308 1 322 3.66e-59 192
Msa0861090 MtrunA17_Chr8g0355121 41.127 355 120 9 1 308 1 313 3.98e-59 191
Msa0861090 MtrunA17_Chr6g0460301 35.083 362 135 10 6 308 1 321 6.78e-37 134
Msa0861090 MtrunA17_Chr7g0254991 43.750 144 62 5 6 140 1 134 9.57e-24 99.0
Msa0861090 MtrunA17_Chr7g0254991 38.235 170 59 6 138 306 194 318 3.26e-16 77.8
Msa0861090 MtrunA17_Chr3g0133971 46.721 122 55 3 22 140 27 141 2.28e-22 96.7
Msa0861090 MtrunA17_Chr3g0133971 52.000 75 34 1 172 244 324 398 9.49e-13 68.2
Msa0861090 MtrunA17_Chr2g0321411 31.984 247 134 9 25 241 11 253 7.31e-21 90.5
Msa0861090 MtrunA17_Chr4g0044771 41.732 127 59 4 22 140 18 137 7.01e-20 89.0
Msa0861090 MtrunA17_Chr2g0321381 28.920 287 155 8 1 241 1 284 1.21e-15 75.9
Msa0861090 MtrunA17_Chr7g0266211 35.878 131 66 2 29 141 46 176 1.23e-14 73.9
Msa0861090 MtrunA17_Chr1g0201751 34.637 179 92 6 87 243 32 207 1.20e-11 63.5
Msa0861090 MtrunA17_Chr4g0051101 38.211 123 56 3 124 243 70 175 2.21e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861090 AT3G56850.1 38.390 323 122 12 22 308 16 297 9.12e-46 157
Msa0861090 AT2G41070.3 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0861090 AT2G41070.1 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0861090 AT2G41070.2 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0861090 AT2G41070.4 36.667 300 120 7 22 306 25 269 7.44e-42 146
Msa0861090 AT2G41070.5 41.322 242 110 7 22 247 16 241 1.60e-40 142
Msa0861090 AT1G49720.1 42.188 128 65 1 22 140 23 150 1.52e-23 99.8
Msa0861090 AT1G49720.3 42.188 128 65 1 22 140 23 150 1.52e-23 99.8
Msa0861090 AT1G49720.2 42.188 128 65 1 22 140 23 150 1.68e-23 99.8
Msa0861090 AT4G34000.3 39.873 158 56 4 22 140 27 184 8.20e-22 95.5
Msa0861090 AT4G34000.1 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0861090 AT4G34000.4 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0861090 AT4G34000.2 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0861090 AT3G44460.1 33.716 261 124 7 24 241 37 291 7.67e-20 88.6
Msa0861090 AT3G19290.2 38.686 137 66 3 22 140 34 170 3.76e-19 87.4
Msa0861090 AT3G19290.4 38.686 137 66 3 22 140 34 170 5.46e-19 87.0
Msa0861090 AT3G19290.3 38.686 137 66 3 22 140 34 170 6.39e-19 87.0
Msa0861090 AT3G19290.1 38.686 137 66 3 22 140 34 170 6.42e-19 87.0
Msa0861090 AT3G19290.5 38.686 137 66 3 22 140 34 170 6.42e-19 87.0
Msa0861090 AT1G03970.1 40.244 164 73 5 94 244 83 234 1.89e-17 80.9
Msa0861090 AT1G45249.1 39.098 133 64 4 22 140 21 150 4.40e-16 78.6
Msa0861090 AT1G45249.4 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0861090 AT1G45249.8 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0861090 AT1G45249.2 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0861090 AT1G45249.9 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0861090 AT1G45249.7 39.098 133 64 4 22 140 36 165 4.91e-16 78.6
Msa0861090 AT1G45249.6 39.098 133 64 4 22 140 36 165 4.91e-16 78.6
Msa0861090 AT1G45249.10 39.098 133 64 4 22 140 21 150 5.16e-16 78.2
Msa0861090 AT1G45249.5 39.098 133 64 4 22 140 21 150 5.16e-16 78.2
Msa0861090 AT1G45249.3 39.098 133 64 4 22 140 21 150 6.18e-16 78.2
Msa0861090 AT2G17770.2 29.651 172 95 5 98 244 1 171 2.28e-12 65.1
Msa0861090 AT2G36270.3 61.404 57 22 0 184 240 342 398 1.69e-11 65.1
Msa0861090 AT2G36270.1 61.404 57 22 0 184 240 342 398 1.97e-11 64.7
Msa0861090 AT2G36270.2 61.404 57 22 0 184 240 342 398 1.97e-11 64.7

Find 127 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTATCATGAGAAATAATT+TGG 0.110275 5_4:-60274704 None:intergenic
TCAACATAAATTTGTGAATA+TGG 0.139500 5_4:-60279041 None:intergenic
GAAATTAAGTAGGTCTTATT+AGG 0.195039 5_4:+60279337 Msa0861090:three_prime_UTR
TGTAAGCTGAGGTGATTATT+AGG 0.210490 5_4:+60279273 Msa0861090:three_prime_UTR
CTACTTAATTTCAGTTTCTT+TGG 0.232176 5_4:-60279326 None:intergenic
CCTTCAGACCTTCTCAAATA+TGG 0.248350 5_4:+60276929 Msa0861090:CDS
AATAGTCTACTAGGAGATTT+GGG 0.275351 5_4:+60275732 Msa0861090:CDS
TAATAGTCTACTAGGAGATT+TGG 0.281034 5_4:+60275731 Msa0861090:CDS
CCTTGGTAACCAGTTCATTA+TGG 0.284719 5_4:-60276409 None:intergenic
ACTCTTCGAAGACGGTATTT+AGG 0.289336 5_4:-60278968 None:intergenic
TTAGGTTCAGGTGATGATTC+AGG 0.303409 5_4:-60278950 None:intergenic
CAACATAAATTTGTGAATAT+GGG 0.318760 5_4:-60279040 None:intergenic
TTACCTGAAGGAAAAGAAAT+AGG 0.328349 5_4:-60274963 None:intergenic
GTAAGCTGAGGTGATTATTA+GGG 0.331486 5_4:+60279274 Msa0861090:three_prime_UTR
GTTTGATGTTCATAGGCTTC+AGG 0.334827 5_4:+60279191 Msa0861090:three_prime_UTR
CGAAGACGGTATTTAGGTTC+AGG 0.343807 5_4:-60278962 None:intergenic
TGGGCAACAGTCTCATTTAC+AGG 0.354570 5_4:+60275656 Msa0861090:CDS
GCTGAAGGAAATAAGGTTGT+AGG 0.386567 5_4:+60275807 Msa0861090:CDS
TTCTTCAATTAGTAGTTTGT+CGG 0.387734 5_4:+60276139 Msa0861090:CDS
GGAGATTTGGGGAAGCCGTT+AGG 0.390252 5_4:+60275744 Msa0861090:CDS
GAAAGTTGAGGATAGGGAAA+TGG 0.390564 5_4:+60275974 Msa0861090:CDS
TTGAGAAGGTCTGAAGGAAT+TGG 0.394839 5_4:-60276923 None:intergenic
TGAGAAGGAAAATCAAGAAT+AGG 0.395993 5_4:+60276225 Msa0861090:CDS
CCTTGCACAGGAGTTTGAGC+AGG 0.397902 5_4:+60278919 Msa0861090:intron
TGCTGGTCACTTGTCAGAAA+AGG 0.398451 5_4:-60279000 None:intergenic
GGAAGAAACCGATTAAAGTA+TGG 0.403603 5_4:-60274909 None:intergenic
TACTATAGCGAAAGCACACC+AGG 0.405628 5_4:-60279112 None:intergenic
CTAGGTCAGAAGAAACAATA+TGG 0.406097 5_4:+60275942 Msa0861090:CDS
CAATGGGTTCTCAAAGTAAT+GGG 0.413643 5_4:+60275637 Msa0861090:CDS
AGTTAGTTAAGCAAAATTCA+TGG 0.414879 5_4:+60275685 Msa0861090:CDS
CAATAATCTGAACAAGTTAG+AGG 0.421804 5_4:-60274930 None:intergenic
ATTGTTTCTTCTGACCTAGC+TGG 0.422038 5_4:-60275938 None:intergenic
AGCTAAGGTTTGATGTTCAT+AGG 0.425292 5_4:+60279184 Msa0861090:three_prime_UTR
AAATTTATGTTGAAGTATCC+TGG 0.427224 5_4:+60279051 Msa0861090:three_prime_UTR
GAGAAGGAAAATCAAGAATA+GGG 0.428756 5_4:+60276226 Msa0861090:CDS
GCGTTCACGTGCAAGAAAAC+AGG 0.432338 5_4:+60276259 Msa0861090:CDS
AGTTTGTCGGATGCAAAATC+AGG 0.438269 5_4:+60276152 Msa0861090:CDS
GTGGACTGCTGAAGGAAATA+AGG 0.439159 5_4:+60275800 Msa0861090:CDS
ATGCAAAATCAGGTCGCAAA+AGG 0.439902 5_4:+60276162 Msa0861090:CDS
ATCTATATTAACTAACTAAA+GGG 0.443756 5_4:+60279153 Msa0861090:three_prime_UTR
ATGTTGAAGTATCCTGGATA+AGG 0.445642 5_4:+60279057 Msa0861090:three_prime_UTR
TATCTATATTAACTAACTAA+AGG 0.445996 5_4:+60279152 Msa0861090:three_prime_UTR
GAGGTGATTATTAGGGAGTC+TGG 0.449100 5_4:+60279281 Msa0861090:three_prime_UTR
AAAGTTGAGGATAGGGAAAT+GGG 0.453635 5_4:+60275975 Msa0861090:CDS
AGGGAGTCTGGTTCTTGAAA+AGG 0.455796 5_4:+60279293 Msa0861090:three_prime_UTR
GAGATTTGGGGAAGCCGTTA+GGG 0.461727 5_4:+60275745 Msa0861090:CDS
CGATGTGAAAGTTGAGGATA+GGG 0.461810 5_4:+60275968 Msa0861090:CDS
TGTAGGGATGGAGAGTGAGC+AGG 0.463391 5_4:+60275824 Msa0861090:CDS
GGATGCATATGAGAAGGCTT+TGG 0.465775 5_4:+60276193 Msa0861090:CDS
GTTAAGCAAAATTCATGGTA+TGG 0.470540 5_4:+60275690 Msa0861090:CDS
GAAATGAAAGTGAGTTGAAT+GGG 0.478556 5_4:+60275606 Msa0861090:exon
CTTCAGACCTCAGTCCTACC+AGG 0.480840 5_4:+60276885 Msa0861090:CDS
TTGCACGGTGTTGCTGCCCC+TGG 0.482023 5_4:+60279094 Msa0861090:three_prime_UTR
CTTGCACAGGAGTTTGAGCA+GGG 0.484759 5_4:+60278920 Msa0861090:intron
AAGAACCACTCCAAGTTTAG+AGG 0.485878 5_4:+60276973 Msa0861090:CDS
GGAAGACGGTGGATGATGTA+TGG 0.489215 5_4:+60275907 Msa0861090:CDS
TATTAGTCCGACGGTGGGGT+TGG 0.490449 5_4:+60276058 Msa0861090:CDS
GCTGGTCACTTGTCAGAAAA+GGG 0.496060 5_4:-60278999 None:intergenic
GGGTCTCGGTGGTACGACTT+TGG 0.498535 5_4:+60275995 Msa0861090:CDS
ACGATGTGAAAGTTGAGGAT+AGG 0.500216 5_4:+60275967 Msa0861090:CDS
ACAATGGGTTCTCAAAGTAA+TGG 0.500285 5_4:+60275636 Msa0861090:CDS
ATCGTCTTCTCTTCAACGGC+AGG 0.510272 5_4:+60275854 Msa0861090:CDS
GCTTCTATTAGTCCGACGGT+GGG 0.511307 5_4:+60276053 Msa0861090:CDS
CAAACTACTAATTGAAGAAG+AGG 0.512419 5_4:-60276135 None:intergenic
ATTTGTGAATATGGGGAATG+AGG 0.513016 5_4:-60279032 None:intergenic
GACGGTGGGGTTGGATGCAA+TGG 0.513361 5_4:+60276067 Msa0861090:CDS
CTGTTCTAGCAGAGTAACCT+TGG 0.515075 5_4:-60276426 None:intergenic
AAGTTATGCTCTCCTTATCC+AGG 0.515544 5_4:-60279069 None:intergenic
AGGTCGCAAAAGGGATGCTC+CGG 0.515870 5_4:+60276172 Msa0861090:CDS
CTTTCAACCGAAAACAAGCT+TGG 0.516273 5_4:+60276109 Msa0861090:CDS
CAAAGAAACTGAAATTAAGT+AGG 0.516851 5_4:+60279327 Msa0861090:three_prime_UTR
CTGAAGGAAATAAGGTTGTA+GGG 0.518539 5_4:+60275808 Msa0861090:CDS
GCAGGCTTACCATAATGAAC+TGG 0.521206 5_4:+60276400 Msa0861090:intron
AGGAAATAAGGTTGTAGGGA+TGG 0.523139 5_4:+60275812 Msa0861090:CDS
CGTCATCGTCTTCTCTTCAA+CGG 0.525850 5_4:+60275850 Msa0861090:CDS
CTTTGGAAAGGAGGCTGAGA+AGG 0.527338 5_4:+60276210 Msa0861090:CDS
GAATGAGGAAACTTCACTGC+TGG 0.529335 5_4:-60279017 None:intergenic
GAGGATAGGGAAATGGGTCT+CGG 0.530192 5_4:+60275981 Msa0861090:CDS
TGCAAAATCAGGTCGCAAAA+GGG 0.532164 5_4:+60276163 Msa0861090:CDS
AACATAAATTTGTGAATATG+GGG 0.532622 5_4:-60279039 None:intergenic
TTGAATGGGGATTCAAACAA+TGG 0.534421 5_4:+60275620 Msa0861090:exon
TGAATGGGGATTCAAACAAT+GGG 0.535901 5_4:+60275621 Msa0861090:exon
AAAGCCTTCTCATATGCATC+CGG 0.537373 5_4:-60276191 None:intergenic
CTGGTAGGACTGAGGTCTGA+AGG 0.541251 5_4:-60276884 None:intergenic
GATGAGGTTAATAGTCTACT+AGG 0.549320 5_4:+60275723 Msa0861090:CDS
TAAAGGGTACATATTAGCTA+AGG 0.553242 5_4:+60279169 Msa0861090:three_prime_UTR
AAGATTGCCTTTGTAAGCTG+AGG 0.557060 5_4:+60279262 Msa0861090:three_prime_UTR
CAGAATGTGTGGACTGCTGA+AGG 0.557306 5_4:+60275792 Msa0861090:CDS
ATGGAGTGTACCTCTAAACT+TGG 0.560073 5_4:-60276983 None:intergenic
GAGTGTGTTAGAATTCAGAC+AGG 0.561239 5_4:-60274788 None:intergenic
CGAATTTCGACCAAATCAAG+TGG 0.565829 5_4:-60274853 None:intergenic
TGAAATGAAAGTGAGTTGAA+TGG 0.565868 5_4:+60275605 Msa0861090:exon
CACTCAGTCCATATTTGAGA+AGG 0.567961 5_4:-60276937 None:intergenic
ATGAGAAGGCTTTGGAAAGG+AGG 0.572932 5_4:+60276201 Msa0861090:CDS
TGGAGACGATGTGAAAGTTG+AGG 0.573499 5_4:+60275962 Msa0861090:CDS
TGGAGCTTCTATTAGTCCGA+CGG 0.576977 5_4:+60276049 Msa0861090:CDS
AGCTTCTATTAGTCCGACGG+TGG 0.577860 5_4:+60276052 Msa0861090:CDS
ACGAGCTTCTTCAGAATGTG+TGG 0.579972 5_4:+60275781 Msa0861090:CDS
CGTTGGCTCGTGCTTTGAGT+GGG 0.589340 5_4:+60275886 Msa0861090:CDS
TCGTGCTTTGAGTGGGAAGA+CGG 0.590102 5_4:+60275893 Msa0861090:CDS
ACGTTGGCTCGTGCTTTGAG+TGG 0.590747 5_4:+60275885 Msa0861090:CDS
CAGGAAAGATTTGAGTCTCG+TGG 0.592505 5_4:+60279210 Msa0861090:three_prime_UTR
ATAATCACCTCAGCTTACAA+AGG 0.599904 5_4:-60279269 None:intergenic
TCAAGATTCATGCTCCCTAA+CGG 0.602234 5_4:-60275759 None:intergenic
CCATATTTGAGAAGGTCTGA+AGG 0.610076 5_4:-60276929 None:intergenic
CCATAATGAACTGGTTACCA+AGG 0.615234 5_4:+60276409 Msa0861090:CDS
GTATGGTCTAACTCTTGATG+AGG 0.618117 5_4:+60275707 Msa0861090:CDS
CTTCTATTAGTCCGACGGTG+GGG 0.618855 5_4:+60276054 Msa0861090:CDS
CAGAACTTACTCTTCGAAGA+CGG 0.629693 5_4:-60278976 None:intergenic
TGCTCCGGATGCATATGAGA+AGG 0.633586 5_4:+60276187 Msa0861090:CDS
TTGAAAGCTTTGAGGAATAG+CGG 0.633827 5_4:-60276093 None:intergenic
CTACCAGGAATAAAACAGAA+AGG 0.634802 5_4:+60276900 Msa0861090:CDS
TATGCAGCTCAAGAAAGAGA+AGG 0.635674 5_4:+60276454 Msa0861090:CDS
AAATGAAAGTGAGTTGAATG+GGG 0.643853 5_4:+60275607 Msa0861090:exon
GAGAGCATAACTTCATTGCA+CGG 0.648663 5_4:+60279079 Msa0861090:three_prime_UTR
TGCTTTGAGTGGGAAGACGG+TGG 0.649656 5_4:+60275896 Msa0861090:CDS
GTGTACCTCTAAACTTGGAG+TGG 0.649695 5_4:-60276978 None:intergenic
ATTGCATCCAACCCCACCGT+CGG 0.650426 5_4:-60276065 None:intergenic
CATATGAGAAGGCTTTGGAA+AGG 0.652484 5_4:+60276198 Msa0861090:CDS
GATAGGGAAATGGGTCTCGG+TGG 0.652593 5_4:+60275984 Msa0861090:CDS
GTATGGAGAGAAATCCAGCT+AGG 0.652627 5_4:+60275924 Msa0861090:CDS
ACTATAGCGAAAGCACACCA+GGG 0.654661 5_4:-60279111 None:intergenic
ACGGCAGGCTAGTATGACGT+TGG 0.673052 5_4:+60275869 Msa0861090:CDS
GAAAGATTTGAGTCTCGTGG+TGG 0.686530 5_4:+60279213 Msa0861090:three_prime_UTR
ATAGTCTACTAGGAGATTTG+GGG 0.688137 5_4:+60275733 Msa0861090:CDS
CTATAGCGAAAGCACACCAG+GGG 0.699287 5_4:-60279110 None:intergenic
TTGCACAGGAGTTTGAGCAG+GGG 0.710311 5_4:+60278921 Msa0861090:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATTTGTTTTTTTTTTT+TGG + chr5_4:60275491-60275510 Msa0861090:intron 10.0%
!!! ATGATTTGTTTTTTTTTTTT+GGG + chr5_4:60275492-60275511 Msa0861090:intron 10.0%
!! TTTAAATAAATTGATTGTAT+CGG + chr5_4:60276315-60276334 Msa0861090:intron 10.0%
!! CATAATAAAAATAAAACTAA+AGG + chr5_4:60276795-60276814 Msa0861090:intron 10.0%
!!! ATTAAAGTATGGATTTTTTT+TGG - chr5_4:60274901-60274920 None:intergenic 15.0%
!! AAAAAAATCCATACTTTAAT+CGG + chr5_4:60274901-60274920 Msa0861090:five_prime_UTR 15.0%
!!! TAATGAATGATTTTGATTAA+TGG + chr5_4:60275055-60275074 Msa0861090:intron 15.0%
!!! AATGAATGATTTTGATTAAT+GGG + chr5_4:60275056-60275075 Msa0861090:intron 15.0%
!! TAAAAATAAAACTAAAGGTA+AGG + chr5_4:60276800-60276819 Msa0861090:intron 15.0%
!!! AATGATTATTTTTGTCTTTT+AGG + chr5_4:60278163-60278182 Msa0861090:intron 15.0%
!!! ACTATTTTTTAAATCAAACA+TGG + chr5_4:60278292-60278311 Msa0861090:intron 15.0%
!! TATCTATATTAACTAACTAA+AGG + chr5_4:60279152-60279171 Msa0861090:three_prime_UTR 15.0%
!! ATCTATATTAACTAACTAAA+GGG + chr5_4:60279153-60279172 Msa0861090:three_prime_UTR 15.0%
!!! ATGAATGATTTTGATTAATG+GGG + chr5_4:60275057-60275076 Msa0861090:intron 20.0%
!! TTTAAGAAATAGAAGAATCT+AGG + chr5_4:60275278-60275297 Msa0861090:intron 20.0%
!! ATGAACTAAAAATAAAACCT+TGG - chr5_4:60276842-60276861 None:intergenic 20.0%
!! TAATGCGAAATACATAATAA+TGG - chr5_4:60277322-60277341 None:intergenic 20.0%
!! TGTCAATGTATTAGTTATTA+TGG + chr5_4:60278001-60278020 Msa0861090:intron 20.0%
!!! GTTATTTTTTCTCAAGTTAT+GGG - chr5_4:60278224-60278243 None:intergenic 20.0%
!!! AGTTATTTTTTCTCAAGTTA+TGG - chr5_4:60278225-60278244 None:intergenic 20.0%
!! AACTTGAGAAAAAATAACTT+TGG + chr5_4:60278226-60278245 Msa0861090:intron 20.0%
!! ACTTGAGAAAAAATAACTTT+GGG + chr5_4:60278227-60278246 Msa0861090:intron 20.0%
!!! AAGCATTCATTTTTTACTAT+GGG - chr5_4:60278370-60278389 None:intergenic 20.0%
!!! AAAGCATTCATTTTTTACTA+TGG - chr5_4:60278371-60278390 None:intergenic 20.0%
!!! ATTTTGTGTAATATGATCTT+AGG + chr5_4:60278470-60278489 Msa0861090:intron 20.0%
!! AAAGAATACACAATATAATC+AGG - chr5_4:60278898-60278917 None:intergenic 20.0%
!! AACATAAATTTGTGAATATG+GGG - chr5_4:60279042-60279061 None:intergenic 20.0%
!! CAACATAAATTTGTGAATAT+GGG - chr5_4:60279043-60279062 None:intergenic 20.0%
!! TCAACATAAATTTGTGAATA+TGG - chr5_4:60279044-60279063 None:intergenic 20.0%
!!! TATTAGGATTTTTAAAGTGA+AGG + chr5_4:60279353-60279372 Msa0861090:three_prime_UTR 20.0%
! CTCTATCATGAGAAATAATT+TGG - chr5_4:60274707-60274726 None:intergenic 25.0%
!!! AAGTATGGATTTTTTTTGGT+CGG - chr5_4:60274897-60274916 None:intergenic 25.0%
! CCATTAACATAAAAAAGAAG+AGG - chr5_4:60275001-60275020 None:intergenic 25.0%
!!! CCTCTTCTTTTTTATGTTAA+TGG + chr5_4:60274998-60275017 Msa0861090:intron 25.0%
! ATTTGTGGTATTTCCTAAAA+AGG + chr5_4:60275089-60275108 Msa0861090:intron 25.0%
! TTCCTAAAAAGGTTAAAACT+TGG + chr5_4:60275100-60275119 Msa0861090:intron 25.0%
!! TGGAAAAAAGTGTACAAAAA+TGG + chr5_4:60275123-60275142 Msa0861090:intron 25.0%
!!! TTTTTTGTAAACCAAGTATC+CGG - chr5_4:60275450-60275469 None:intergenic 25.0%
! AGTTAGTTAAGCAAAATTCA+TGG + chr5_4:60275685-60275704 Msa0861090:CDS 25.0%
!! TTCTTCAATTAGTAGTTTGT+CGG + chr5_4:60276139-60276158 Msa0861090:CDS 25.0%
! TTACTTTACATAACGCATAA+AGG - chr5_4:60276290-60276309 None:intergenic 25.0%
!! TATTCATCATTTTCCTTAGT+TGG + chr5_4:60276340-60276359 Msa0861090:intron 25.0%
! AAGCAAATATATTCCAACTA+AGG - chr5_4:60276356-60276375 None:intergenic 25.0%
! TGTGACTTATAAATGTTTGA+TGG + chr5_4:60276376-60276395 Msa0861090:intron 25.0%
! TCTACGAAAAGATAACTTAA+CGG - chr5_4:60276550-60276569 None:intergenic 25.0%
! TGATTCTGATTTCTTAATGT+CGG - chr5_4:60276656-60276675 None:intergenic 25.0%
! GTGAGGTATATTCTATTTAT+TGG + chr5_4:60276680-60276699 Msa0861090:intron 25.0%
! AACTAAAAATAAAACCTTGG+AGG - chr5_4:60276839-60276858 None:intergenic 25.0%
! ATTCTAAACCGTTCTATATA+AGG + chr5_4:60277143-60277162 Msa0861090:intron 25.0%
! TATGTTAGTAGCATTTAGTA+GGG + chr5_4:60277417-60277436 Msa0861090:intron 25.0%
! TCTTGTACTGTATTCTATAA+AGG + chr5_4:60277464-60277483 Msa0861090:intron 25.0%
! CACTAGAATTAAGTATCTAA+CGG - chr5_4:60277798-60277817 None:intergenic 25.0%
! ATTTCAGTTGTCATTCAATT+TGG + chr5_4:60277819-60277838 Msa0861090:intron 25.0%
!! ACCATTTATGTTGATTGATT+AGG - chr5_4:60277963-60277982 None:intergenic 25.0%
!! CACTGATATTTTACCATATT+AGG - chr5_4:60278066-60278085 None:intergenic 25.0%
!!! GCTTTATTTTTTAGTAGCAT+TGG + chr5_4:60278090-60278109 Msa0861090:intron 25.0%
! TATATCGAGATTATCTACAA+GGG - chr5_4:60278545-60278564 None:intergenic 25.0%
! ATATATCGAGATTATCTACA+AGG - chr5_4:60278546-60278565 None:intergenic 25.0%
! AATGGTACTTAATATAGCAA+AGG - chr5_4:60278585-60278604 None:intergenic 25.0%
!! AAATTTATGTTGAAGTATCC+TGG + chr5_4:60279051-60279070 Msa0861090:three_prime_UTR 25.0%
! CTACTTAATTTCAGTTTCTT+TGG - chr5_4:60279329-60279348 None:intergenic 25.0%
! CAAAGAAACTGAAATTAAGT+AGG + chr5_4:60279327-60279346 Msa0861090:three_prime_UTR 25.0%
!!! GAAATTAAGTAGGTCTTATT+AGG + chr5_4:60279337-60279356 Msa0861090:three_prime_UTR 25.0%
! TGATTCAGTTATGAAAAAGT+TGG + chr5_4:60279400-60279419 Msa0861090:three_prime_UTR 25.0%
! TGTTTTTCTTCCACTTGATT+TGG + chr5_4:60274843-60274862 Msa0861090:five_prime_UTR 30.0%
!!! AGTATGGATTTTTTTTGGTC+GGG - chr5_4:60274896-60274915 None:intergenic 30.0%
CAATAATCTGAACAAGTTAG+AGG - chr5_4:60274933-60274952 None:intergenic 30.0%
TTACCTGAAGGAAAAGAAAT+AGG - chr5_4:60274966-60274985 None:intergenic 30.0%
AACGAGTAATTATTACCTGA+AGG - chr5_4:60274978-60274997 None:intergenic 30.0%
!! CACCAAGTTTTAACCTTTTT+AGG - chr5_4:60275105-60275124 None:intergenic 30.0%
CTAAAAAGGTTAAAACTTGG+TGG + chr5_4:60275103-60275122 Msa0861090:intron 30.0%
AAATAGAAGAATCTAGGCTT+TGG + chr5_4:60275284-60275303 Msa0861090:intron 30.0%
! TGAAATGAAAGTGAGTTGAA+TGG + chr5_4:60275605-60275624 Msa0861090:exon 30.0%
! GAAATGAAAGTGAGTTGAAT+GGG + chr5_4:60275606-60275625 Msa0861090:exon 30.0%
! AAATGAAAGTGAGTTGAATG+GGG + chr5_4:60275607-60275626 Msa0861090:exon 30.0%
GTTAAGCAAAATTCATGGTA+TGG + chr5_4:60275690-60275709 Msa0861090:CDS 30.0%
TAATAGTCTACTAGGAGATT+TGG + chr5_4:60275731-60275750 Msa0861090:CDS 30.0%
AATAGTCTACTAGGAGATTT+GGG + chr5_4:60275732-60275751 Msa0861090:CDS 30.0%
!!! AAGATTTTTTAGTGCAAGCA+GGG + chr5_4:60276018-60276037 Msa0861090:CDS 30.0%
CAAACTACTAATTGAAGAAG+AGG - chr5_4:60276138-60276157 None:intergenic 30.0%
TGAGAAGGAAAATCAAGAAT+AGG + chr5_4:60276225-60276244 Msa0861090:CDS 30.0%
GAGAAGGAAAATCAAGAATA+GGG + chr5_4:60276226-60276245 Msa0861090:CDS 30.0%
!! TTATAAATGTTTGATGGTGC+AGG + chr5_4:60276382-60276401 Msa0861090:intron 30.0%
AAACTAAAGGTAAGGAAACT+AGG + chr5_4:60276808-60276827 Msa0861090:intron 30.0%
! GTTCATATAAGTGTTTCTGA+AGG + chr5_4:60276856-60276875 Msa0861090:intron 30.0%
ATACTTCTTAAATTGCTGCT+TGG - chr5_4:60277093-60277112 None:intergenic 30.0%
! TTTACAGGCCTTATATAGAA+CGG - chr5_4:60277154-60277173 None:intergenic 30.0%
! CACAAACACATGATTTTTAC+AGG - chr5_4:60277169-60277188 None:intergenic 30.0%
ACTACAACGTATACAGAAAA+GGG - chr5_4:60277226-60277245 None:intergenic 30.0%
!! ATTTTAGTGCCAGGAAAAAA+AGG - chr5_4:60277275-60277294 None:intergenic 30.0%
GTATGTTAGTAGCATTTAGT+AGG + chr5_4:60277416-60277435 Msa0861090:intron 30.0%
! ACCAATTTTACTTTATAGCC+TGG + chr5_4:60277487-60277506 Msa0861090:intron 30.0%
TCCAGGCTATAAAGTAAAAT+TGG - chr5_4:60277491-60277510 None:intergenic 30.0%
TCATCATGAATGAAAACCAT+TGG - chr5_4:60277528-60277547 None:intergenic 30.0%
! TTCATTCATGATGAGTTTTG+AGG + chr5_4:60277534-60277553 Msa0861090:intron 30.0%
CAAAATCAATAATCTATCCC+TGG + chr5_4:60277635-60277654 Msa0861090:intron 30.0%
ATGAAACTTCAAACGTATCT+TGG + chr5_4:60277913-60277932 Msa0861090:intron 30.0%
GCCTAATCAATCAACATAAA+TGG + chr5_4:60277959-60277978 Msa0861090:intron 30.0%
TGACATCTGTTATCCTAATA+TGG + chr5_4:60278050-60278069 Msa0861090:intron 30.0%
ACCATTATTACTTATCACGT+AGG + chr5_4:60278133-60278152 Msa0861090:intron 30.0%
TTTCTCAAGTTATGGGATAA+CGG - chr5_4:60278217-60278236 None:intergenic 30.0%
CTGATATGCAAAAAACTGAA+GGG - chr5_4:60278342-60278361 None:intergenic 30.0%
TCTGATATGCAAAAAACTGA+AGG - chr5_4:60278343-60278362 None:intergenic 30.0%
AACTTAAGTAGAGTTGCATA+AGG + chr5_4:60278442-60278461 Msa0861090:intron 30.0%
TGCTATATTAAGTACCATTG+TGG + chr5_4:60278586-60278605 Msa0861090:intron 30.0%
GTAAAATCAATACTCCACAA+TGG - chr5_4:60278603-60278622 None:intergenic 30.0%
!!! TGGAGTATTGATTTTACTTG+TGG + chr5_4:60278606-60278625 Msa0861090:intron 30.0%
TTTCAAAACAAAGAGACATG+TGG - chr5_4:60278636-60278655 None:intergenic 30.0%
! GTTTTGTACATGTTTCTCAA+AGG + chr5_4:60278806-60278825 Msa0861090:intron 30.0%
! TAAAGGGTACATATTAGCTA+AGG + chr5_4:60279169-60279188 Msa0861090:three_prime_UTR 30.0%
!! GCTTTCGCTATTTAATTTTC+TGG - chr5_4:60279447-60279466 None:intergenic 30.0%
AGAAAAACACAGAACAGAAC+AGG - chr5_4:60274832-60274851 None:intergenic 35.0%
GGAAGAAACCGATTAAAGTA+TGG - chr5_4:60274912-60274931 None:intergenic 35.0%
!! GATCCTATTTCTTTTCCTTC+AGG + chr5_4:60274960-60274979 Msa0861090:five_prime_UTR 35.0%
ATAAGGTTGGATTGAGTGTT+AGG + chr5_4:60275229-60275248 Msa0861090:intron 35.0%
TTGGGAAAGTAAGTTGTTCT+AGG + chr5_4:60275510-60275529 Msa0861090:intron 35.0%
TGGGAAAGTAAGTTGTTCTA+GGG + chr5_4:60275511-60275530 Msa0861090:intron 35.0%
TTGAATGGGGATTCAAACAA+TGG + chr5_4:60275620-60275639 Msa0861090:exon 35.0%
TGAATGGGGATTCAAACAAT+GGG + chr5_4:60275621-60275640 Msa0861090:exon 35.0%
! ACAATGGGTTCTCAAAGTAA+TGG + chr5_4:60275636-60275655 Msa0861090:CDS 35.0%
! CAATGGGTTCTCAAAGTAAT+GGG + chr5_4:60275637-60275656 Msa0861090:CDS 35.0%
GATGAGGTTAATAGTCTACT+AGG + chr5_4:60275723-60275742 Msa0861090:CDS 35.0%
ATAGTCTACTAGGAGATTTG+GGG + chr5_4:60275733-60275752 Msa0861090:CDS 35.0%
CTGAAGGAAATAAGGTTGTA+GGG + chr5_4:60275808-60275827 Msa0861090:CDS 35.0%
CTAGGTCAGAAGAAACAATA+TGG + chr5_4:60275942-60275961 Msa0861090:CDS 35.0%
AAAGTTGAGGATAGGGAAAT+GGG + chr5_4:60275975-60275994 Msa0861090:CDS 35.0%
!!! GAAGATTTTTTAGTGCAAGC+AGG + chr5_4:60276017-60276036 Msa0861090:CDS 35.0%
!! TTGAAAGCTTTGAGGAATAG+CGG - chr5_4:60276096-60276115 None:intergenic 35.0%
ACAAACAGCAAACACTAAGT+GGG - chr5_4:60276503-60276522 None:intergenic 35.0%
AACAAACAGCAAACACTAAG+TGG - chr5_4:60276504-60276523 None:intergenic 35.0%
AAGATGTGAACTCGATTCAT+TGG + chr5_4:60276721-60276740 Msa0861090:intron 35.0%
!! CTTTCTGTTTTATTCCTGGT+AGG - chr5_4:60276902-60276921 None:intergenic 35.0%
CTACCAGGAATAAAACAGAA+AGG + chr5_4:60276900-60276919 Msa0861090:CDS 35.0%
GTTAACATACTCACTTAGCA+GGG - chr5_4:60277035-60277054 None:intergenic 35.0%
AGTTAACATACTCACTTAGC+AGG - chr5_4:60277036-60277055 None:intergenic 35.0%
CACTACAACGTATACAGAAA+AGG - chr5_4:60277227-60277246 None:intergenic 35.0%
CCAGGAAAAAAAGGAATACT+TGG - chr5_4:60277266-60277285 None:intergenic 35.0%
!!! CCAAGTATTCCTTTTTTTCC+TGG + chr5_4:60277263-60277282 Msa0861090:intron 35.0%
!!! TGTCAATGTATTTTAGTGCC+AGG - chr5_4:60277284-60277303 None:intergenic 35.0%
ACTCGAAGGATCAAATCATA+AGG - chr5_4:60277445-60277464 None:intergenic 35.0%
GACATGTTTGTCTTAACCAA+TGG + chr5_4:60277509-60277528 Msa0861090:intron 35.0%
AACCATCATGGAAATTTCCA+GGG - chr5_4:60277655-60277674 None:intergenic 35.0%
CTACATTTGTGAAACAACTG+TGG - chr5_4:60277697-60277716 None:intergenic 35.0%
TTGGATAAGCTGCATTGAAA+AGG + chr5_4:60277838-60277857 Msa0861090:intron 35.0%
! TAGTTATTATGGTAGTGACG+CGG + chr5_4:60278012-60278031 Msa0861090:intron 35.0%
GCCTACGTGATAAGTAATAA+TGG - chr5_4:60278137-60278156 None:intergenic 35.0%
!! TCTTTTAGGTAGTTTTCCGT+TGG + chr5_4:60278177-60278196 Msa0861090:intron 35.0%
!! CTTTTAGGTAGTTTTCCGTT+GGG + chr5_4:60278178-60278197 Msa0861090:intron 35.0%
TTCTCAAGTTATGGGATAAC+GGG - chr5_4:60278216-60278235 None:intergenic 35.0%
AGGACGAAATTGATGGAAAA+AGG - chr5_4:60278671-60278690 None:intergenic 35.0%
ATTTGTGAATATGGGGAATG+AGG - chr5_4:60279035-60279054 None:intergenic 35.0%
! ATGTTGAAGTATCCTGGATA+AGG + chr5_4:60279057-60279076 Msa0861090:three_prime_UTR 35.0%
AGCTAAGGTTTGATGTTCAT+AGG + chr5_4:60279184-60279203 Msa0861090:three_prime_UTR 35.0%
ATAATCACCTCAGCTTACAA+AGG - chr5_4:60279272-60279291 None:intergenic 35.0%
TGTAAGCTGAGGTGATTATT+AGG + chr5_4:60279273-60279292 Msa0861090:three_prime_UTR 35.0%
GTAAGCTGAGGTGATTATTA+GGG + chr5_4:60279274-60279293 Msa0861090:three_prime_UTR 35.0%
GAGTGTGTTAGAATTCAGAC+AGG - chr5_4:60274791-60274810 None:intergenic 40.0%
CGAATTTCGACCAAATCAAG+TGG - chr5_4:60274856-60274875 None:intergenic 40.0%
! ATGGGGTTGATCATGATTTG+TGG + chr5_4:60275074-60275093 Msa0861090:intron 40.0%
ATGTTGTGTTACATCAGCTG+GGG - chr5_4:60275198-60275217 None:intergenic 40.0%
CATGTTGTGTTACATCAGCT+GGG - chr5_4:60275199-60275218 None:intergenic 40.0%
CAGCTGATGTAACACAACAT+GGG + chr5_4:60275198-60275217 Msa0861090:intron 40.0%
AGCTGATGTAACACAACATG+GGG + chr5_4:60275199-60275218 Msa0861090:intron 40.0%
GGATTGAGTGTTAGGTTTGT+TGG + chr5_4:60275237-60275256 Msa0861090:intron 40.0%
!! AAGAATCTAGGCTTTGGACT+TGG + chr5_4:60275290-60275309 Msa0861090:intron 40.0%
GTATGGTCTAACTCTTGATG+AGG + chr5_4:60275707-60275726 Msa0861090:CDS 40.0%
TCAAGATTCATGCTCCCTAA+CGG - chr5_4:60275762-60275781 None:intergenic 40.0%
GCTGAAGGAAATAAGGTTGT+AGG + chr5_4:60275807-60275826 Msa0861090:CDS 40.0%
AGGAAATAAGGTTGTAGGGA+TGG + chr5_4:60275812-60275831 Msa0861090:CDS 40.0%
! ATTGTTTCTTCTGACCTAGC+TGG - chr5_4:60275941-60275960 None:intergenic 40.0%
ACGATGTGAAAGTTGAGGAT+AGG + chr5_4:60275967-60275986 Msa0861090:CDS 40.0%
CGATGTGAAAGTTGAGGATA+GGG + chr5_4:60275968-60275987 Msa0861090:CDS 40.0%
GAAAGTTGAGGATAGGGAAA+TGG + chr5_4:60275974-60275993 Msa0861090:CDS 40.0%
! GTTTTCGGTTGAAAGCTTTG+AGG - chr5_4:60276104-60276123 None:intergenic 40.0%
CTTTCAACCGAAAACAAGCT+TGG + chr5_4:60276109-60276128 Msa0861090:CDS 40.0%
!! GAGGATACCAAGCTTGTTTT+CGG - chr5_4:60276119-60276138 None:intergenic 40.0%
AGTTTGTCGGATGCAAAATC+AGG + chr5_4:60276152-60276171 Msa0861090:CDS 40.0%
ATGCAAAATCAGGTCGCAAA+AGG + chr5_4:60276162-60276181 Msa0861090:CDS 40.0%
TGCAAAATCAGGTCGCAAAA+GGG + chr5_4:60276163-60276182 Msa0861090:CDS 40.0%
AAAGCCTTCTCATATGCATC+CGG - chr5_4:60276194-60276213 None:intergenic 40.0%
!! CATATGAGAAGGCTTTGGAA+AGG + chr5_4:60276198-60276217 Msa0861090:CDS 40.0%
! CCTTGGTAACCAGTTCATTA+TGG - chr5_4:60276412-60276431 None:intergenic 40.0%
CCATAATGAACTGGTTACCA+AGG + chr5_4:60276409-60276428 Msa0861090:CDS 40.0%
TATGCAGCTCAAGAAAGAGA+AGG + chr5_4:60276454-60276473 Msa0861090:CDS 40.0%
AAACAGCAAACACTAAGTGG+GGG - chr5_4:60276501-60276520 None:intergenic 40.0%
CAAACAGCAAACACTAAGTG+GGG - chr5_4:60276502-60276521 None:intergenic 40.0%
GAAATCAGAATCACAGTGTG+AGG + chr5_4:60276663-60276682 Msa0861090:intron 40.0%
AACTCGATTCATTGGATGTG+AGG + chr5_4:60276729-60276748 Msa0861090:intron 40.0%
GAAACTAGGAAATTCCTCCA+AGG + chr5_4:60276822-60276841 Msa0861090:intron 40.0%
! TTTTATTCCTGGTAGGACTG+AGG - chr5_4:60276895-60276914 None:intergenic 40.0%
!! TGGCCTTTCTGTTTTATTCC+TGG - chr5_4:60276906-60276925 None:intergenic 40.0%
TTGAGAAGGTCTGAAGGAAT+TGG - chr5_4:60276926-60276945 None:intergenic 40.0%
CCATATTTGAGAAGGTCTGA+AGG - chr5_4:60276932-60276951 None:intergenic 40.0%
CCTTCAGACCTTCTCAAATA+TGG + chr5_4:60276929-60276948 Msa0861090:CDS 40.0%
CACTCAGTCCATATTTGAGA+AGG - chr5_4:60276940-60276959 None:intergenic 40.0%
AAGAACCACTCCAAGTTTAG+AGG + chr5_4:60276973-60276992 Msa0861090:CDS 40.0%
ATGGAGTGTACCTCTAAACT+TGG - chr5_4:60276986-60277005 None:intergenic 40.0%
!! TTCTCTGTTTCTGCTGTTCA+TGG - chr5_4:60277064-60277083 None:intergenic 40.0%
GAATACAGTACAAGACTCGA+AGG - chr5_4:60277459-60277478 None:intergenic 40.0%
TGGTTAAGACAAACATGTCC+AGG - chr5_4:60277508-60277527 None:intergenic 40.0%
CAAAGATCCCTACAAAACGA+AGG - chr5_4:60277600-60277619 None:intergenic 40.0%
ATCCCTGGAAATTTCCATGA+TGG + chr5_4:60277650-60277669 Msa0861090:intron 40.0%
CAACCATCATGGAAATTTCC+AGG - chr5_4:60277656-60277675 None:intergenic 40.0%
ATTTCCATGATGGTTGTCCA+TGG + chr5_4:60277660-60277679 Msa0861090:intron 40.0%
CATTTGTGAAACAACTGTGG+AGG - chr5_4:60277694-60277713 None:intergenic 40.0%
ATTGGTGAATGATGAGAGAG+AGG + chr5_4:60278108-60278127 Msa0861090:intron 40.0%
TATGCAAAAAACTGAAGGGC+TGG - chr5_4:60278338-60278357 None:intergenic 40.0%
! GTTGTTTAGGCTCTTGTTGT+TGG + chr5_4:60278419-60278438 Msa0861090:intron 40.0%
GTGATACAGGACGAAATTGA+TGG - chr5_4:60278678-60278697 None:intergenic 40.0%
AGATGATGACTCAGTGATAC+AGG - chr5_4:60278691-60278710 None:intergenic 40.0%
ACTCTGTAAGAACAGAAGCA+CGG - chr5_4:60278732-60278751 None:intergenic 40.0%
TTAGGTTCAGGTGATGATTC+AGG - chr5_4:60278953-60278972 None:intergenic 40.0%
ACTCTTCGAAGACGGTATTT+AGG - chr5_4:60278971-60278990 None:intergenic 40.0%
CAGAACTTACTCTTCGAAGA+CGG - chr5_4:60278979-60278998 None:intergenic 40.0%
AAGTTATGCTCTCCTTATCC+AGG - chr5_4:60279072-60279091 None:intergenic 40.0%
! GAGAGCATAACTTCATTGCA+CGG + chr5_4:60279079-60279098 Msa0861090:three_prime_UTR 40.0%
GTTTGATGTTCATAGGCTTC+AGG + chr5_4:60279191-60279210 Msa0861090:three_prime_UTR 40.0%
AAGATTGCCTTTGTAAGCTG+AGG + chr5_4:60279262-60279281 Msa0861090:three_prime_UTR 40.0%
CCATGTTGTGTTACATCAGC+TGG - chr5_4:60275200-60275219 None:intergenic 45.0%
CCAGCTGATGTAACACAACA+TGG + chr5_4:60275197-60275216 Msa0861090:intron 45.0%
GCTGATGTAACACAACATGG+GGG + chr5_4:60275200-60275219 Msa0861090:intron 45.0%
ACATGAATCGGTTGCACCTA+GGG - chr5_4:60275350-60275369 None:intergenic 45.0%
! GTGCAACCGATTCATGTGTT+GGG + chr5_4:60275353-60275372 Msa0861090:intron 45.0%
! AACCGATTCATGTGTTGGGT+TGG + chr5_4:60275357-60275376 Msa0861090:intron 45.0%
GACCAACCCAACACATGAAT+CGG - chr5_4:60275362-60275381 None:intergenic 45.0%
!! TGGGTTGGTCTGACTTCTAT+TGG + chr5_4:60275372-60275391 Msa0861090:intron 45.0%
!! GTAAGTTGTTCTAGGGCTTG+TGG + chr5_4:60275518-60275537 Msa0861090:intron 45.0%
!! TTGTGGTTCTGTGGTTTGGT+TGG + chr5_4:60275535-60275554 Msa0861090:intron 45.0%
!! GCACTGATTGTGATGATGAC+AGG + chr5_4:60275574-60275593 Msa0861090:intron 45.0%
TGGGCAACAGTCTCATTTAC+AGG + chr5_4:60275656-60275675 Msa0861090:CDS 45.0%
ACGAGCTTCTTCAGAATGTG+TGG + chr5_4:60275781-60275800 Msa0861090:CDS 45.0%
! GTGGACTGCTGAAGGAAATA+AGG + chr5_4:60275800-60275819 Msa0861090:CDS 45.0%
CGTCATCGTCTTCTCTTCAA+CGG + chr5_4:60275850-60275869 Msa0861090:CDS 45.0%
GTATGGAGAGAAATCCAGCT+AGG + chr5_4:60275924-60275943 Msa0861090:CDS 45.0%
TGGAGACGATGTGAAAGTTG+AGG + chr5_4:60275962-60275981 Msa0861090:CDS 45.0%
TGGAGCTTCTATTAGTCCGA+CGG + chr5_4:60276049-60276068 Msa0861090:CDS 45.0%
GGATGCATATGAGAAGGCTT+TGG + chr5_4:60276193-60276212 Msa0861090:CDS 45.0%
!! ATGAGAAGGCTTTGGAAAGG+AGG + chr5_4:60276201-60276220 Msa0861090:CDS 45.0%
CACGTGCAAGAAAACAGGTT+TGG + chr5_4:60276264-60276283 Msa0861090:intron 45.0%
GCAGGCTTACCATAATGAAC+TGG + chr5_4:60276400-60276419 Msa0861090:intron 45.0%
CTGTTCTAGCAGAGTAACCT+TGG - chr5_4:60276429-60276448 None:intergenic 45.0%
GTGTACCTCTAAACTTGGAG+TGG - chr5_4:60276981-60277000 None:intergenic 45.0%
! CAAAACGAAGGCGTGCATAA+AGG - chr5_4:60277588-60277607 None:intergenic 45.0%
! TATGCACGCCTTCGTTTTGT+AGG + chr5_4:60277589-60277608 Msa0861090:intron 45.0%
! ATGCACGCCTTCGTTTTGTA+GGG + chr5_4:60277590-60277609 Msa0861090:intron 45.0%
TGATCCATGGACAACCATCA+TGG - chr5_4:60277667-60277686 None:intergenic 45.0%
TGATGGTTGTCCATGGATCA+AGG + chr5_4:60277667-60277686 Msa0861090:intron 45.0%
! GTCAGCGCTGTATGTTGTTT+AGG + chr5_4:60278406-60278425 Msa0861090:intron 45.0%
GTGTATTCTTTCCCTTGCAC+AGG + chr5_4:60278907-60278926 Msa0861090:intron 45.0%
! CGAAGACGGTATTTAGGTTC+AGG - chr5_4:60278965-60278984 None:intergenic 45.0%
GCTGGTCACTTGTCAGAAAA+GGG - chr5_4:60279002-60279021 None:intergenic 45.0%
TGCTGGTCACTTGTCAGAAA+AGG - chr5_4:60279003-60279022 None:intergenic 45.0%
GAATGAGGAAACTTCACTGC+TGG - chr5_4:60279020-60279039 None:intergenic 45.0%
! ACTATAGCGAAAGCACACCA+GGG - chr5_4:60279114-60279133 None:intergenic 45.0%
! TACTATAGCGAAAGCACACC+AGG - chr5_4:60279115-60279134 None:intergenic 45.0%
CAGGAAAGATTTGAGTCTCG+TGG + chr5_4:60279210-60279229 Msa0861090:three_prime_UTR 45.0%
GAAAGATTTGAGTCTCGTGG+TGG + chr5_4:60279213-60279232 Msa0861090:three_prime_UTR 45.0%
GAGGTGATTATTAGGGAGTC+TGG + chr5_4:60279281-60279300 Msa0861090:three_prime_UTR 45.0%
!! AGGGAGTCTGGTTCTTGAAA+AGG + chr5_4:60279293-60279312 Msa0861090:three_prime_UTR 45.0%
CAACATGGGGGCTTGCAATA+AGG + chr5_4:60275212-60275231 Msa0861090:intron 50.0%
ATGGGGGCTTGCAATAAGGT+TGG + chr5_4:60275216-60275235 Msa0861090:intron 50.0%
CATGAATCGGTTGCACCTAG+GGG - chr5_4:60275349-60275368 None:intergenic 50.0%
CACATGAATCGGTTGCACCT+AGG - chr5_4:60275351-60275370 None:intergenic 50.0%
! GGTGCAACCGATTCATGTGT+TGG + chr5_4:60275352-60275371 Msa0861090:intron 50.0%
!! TTCTAGGGCTTGTGGTTCTG+TGG + chr5_4:60275526-60275545 Msa0861090:intron 50.0%
GAGATTTGGGGAAGCCGTTA+GGG + chr5_4:60275745-60275764 Msa0861090:CDS 50.0%
! CAGAATGTGTGGACTGCTGA+AGG + chr5_4:60275792-60275811 Msa0861090:CDS 50.0%
ATCGTCTTCTCTTCAACGGC+AGG + chr5_4:60275854-60275873 Msa0861090:CDS 50.0%
! TCGTGCTTTGAGTGGGAAGA+CGG + chr5_4:60275893-60275912 Msa0861090:CDS 50.0%
GGAAGACGGTGGATGATGTA+TGG + chr5_4:60275907-60275926 Msa0861090:CDS 50.0%
GAGGATAGGGAAATGGGTCT+CGG + chr5_4:60275981-60276000 Msa0861090:CDS 50.0%
AGCTTCTATTAGTCCGACGG+TGG + chr5_4:60276052-60276071 Msa0861090:CDS 50.0%
GCTTCTATTAGTCCGACGGT+GGG + chr5_4:60276053-60276072 Msa0861090:CDS 50.0%
CTTCTATTAGTCCGACGGTG+GGG + chr5_4:60276054-60276073 Msa0861090:CDS 50.0%
TGCTCCGGATGCATATGAGA+AGG + chr5_4:60276187-60276206 Msa0861090:CDS 50.0%
! CTTTGGAAAGGAGGCTGAGA+AGG + chr5_4:60276210-60276229 Msa0861090:CDS 50.0%
! TTTTCTTGCACGTGAACGCG+CGG - chr5_4:60276258-60276277 None:intergenic 50.0%
GCGTTCACGTGCAAGAAAAC+AGG + chr5_4:60276259-60276278 Msa0861090:CDS 50.0%
! AGAGGTACACTCCATGTGCT+AGG + chr5_4:60276991-60277010 Msa0861090:intron 50.0%
GCAACATCTTGCCTAGCACA+TGG - chr5_4:60277005-60277024 None:intergenic 50.0%
GGGACTGCTTAAAGTCCCAA+CGG - chr5_4:60278196-60278215 None:intergenic 50.0%
CTGCTCAAACTCCTGTGCAA+GGG - chr5_4:60278921-60278940 None:intergenic 50.0%
CTTGCACAGGAGTTTGAGCA+GGG + chr5_4:60278920-60278939 Msa0861090:intron 50.0%
TTGCACAGGAGTTTGAGCAG+GGG + chr5_4:60278921-60278940 Msa0861090:intron 50.0%
! CTATAGCGAAAGCACACCAG+GGG - chr5_4:60279113-60279132 None:intergenic 50.0%
!! AGGCTTTGGACTTGGAAGCG+CGG + chr5_4:60275298-60275317 Msa0861090:intron 55.0%
GTCGTAGGTTCGAATCCCCT+AGG + chr5_4:60275331-60275350 Msa0861090:intron 55.0%
GGTCTGACTTCTATTGGCCC+CGG + chr5_4:60275378-60275397 Msa0861090:intron 55.0%
!! ATTGGTCCCCCCGGATTAGT+CGG + chr5_4:60275416-60275435 Msa0861090:intron 55.0%
CAAAGACCGACTAATCCGGG+GGG - chr5_4:60275425-60275444 None:intergenic 55.0%
CCAAAGACCGACTAATCCGG+GGG - chr5_4:60275426-60275445 None:intergenic 55.0%
CCCAAAGACCGACTAATCCG+GGG - chr5_4:60275427-60275446 None:intergenic 55.0%
!! CCCCGGATTAGTCGGTCTTT+GGG + chr5_4:60275424-60275443 Msa0861090:intron 55.0%
GCCCAAAGACCGACTAATCC+GGG - chr5_4:60275428-60275447 None:intergenic 55.0%
GGCCCAAAGACCGACTAATC+CGG - chr5_4:60275429-60275448 None:intergenic 55.0%
!! GGATTAGTCGGTCTTTGGGC+CGG + chr5_4:60275428-60275447 Msa0861090:intron 55.0%
! GGGCTTGTGGTTCTGTGGTT+TGG + chr5_4:60275531-60275550 Msa0861090:intron 55.0%
GGAGATTTGGGGAAGCCGTT+AGG + chr5_4:60275744-60275763 Msa0861090:CDS 55.0%
TGTAGGGATGGAGAGTGAGC+AGG + chr5_4:60275824-60275843 Msa0861090:CDS 55.0%
ACGGCAGGCTAGTATGACGT+TGG + chr5_4:60275869-60275888 Msa0861090:CDS 55.0%
!! ACGTTGGCTCGTGCTTTGAG+TGG + chr5_4:60275885-60275904 Msa0861090:CDS 55.0%
!! CGTTGGCTCGTGCTTTGAGT+GGG + chr5_4:60275886-60275905 Msa0861090:CDS 55.0%
! TGCTTTGAGTGGGAAGACGG+TGG + chr5_4:60275896-60275915 Msa0861090:CDS 55.0%
GATAGGGAAATGGGTCTCGG+TGG + chr5_4:60275984-60276003 Msa0861090:CDS 55.0%
! GTGCAAGCAGGGCTTTTTGC+TGG + chr5_4:60276029-60276048 Msa0861090:CDS 55.0%
TATTAGTCCGACGGTGGGGT+TGG + chr5_4:60276058-60276077 Msa0861090:CDS 55.0%
ATTGCATCCAACCCCACCGT+CGG - chr5_4:60276068-60276087 None:intergenic 55.0%
AGGTCGCAAAAGGGATGCTC+CGG + chr5_4:60276172-60276191 Msa0861090:CDS 55.0%
CTGGTAGGACTGAGGTCTGA+AGG - chr5_4:60276887-60276906 None:intergenic 55.0%
CTTCAGACCTCAGTCCTACC+AGG + chr5_4:60276885-60276904 Msa0861090:CDS 55.0%
CTGTGGAGGACCTTGATCCA+TGG - chr5_4:60277680-60277699 None:intergenic 55.0%
CCTGCTCAAACTCCTGTGCA+AGG - chr5_4:60278922-60278941 None:intergenic 55.0%
CCTTGCACAGGAGTTTGAGC+AGG + chr5_4:60278919-60278938 Msa0861090:intron 55.0%
! TTGGAAGCGCGGTGCTCTGT+AGG + chr5_4:60275309-60275328 Msa0861090:intron 60.0%
CTTCTATTGGCCCCGGCTAG+TGG + chr5_4:60275385-60275404 Msa0861090:intron 60.0%
TATTGGCCCCGGCTAGTGGA+TGG + chr5_4:60275389-60275408 Msa0861090:intron 60.0%
AATCCCGCCATCCACTAGCC+GGG - chr5_4:60275399-60275418 None:intergenic 60.0%
CAATCCCGCCATCCACTAGC+CGG - chr5_4:60275400-60275419 None:intergenic 60.0%
!! CCCCCGGATTAGTCGGTCTT+TGG + chr5_4:60275423-60275442 Msa0861090:intron 60.0%
CGGTCTTTGGGCCGGATACT+TGG + chr5_4:60275436-60275455 Msa0861090:intron 60.0%
GGGTCTCGGTGGTACGACTT+TGG + chr5_4:60275995-60276014 Msa0861090:CDS 60.0%
GACGGTGGGGTTGGATGCAA+TGG + chr5_4:60276067-60276086 Msa0861090:CDS 60.0%
CGCGGTGCTCTGTAGGTCGT+AGG + chr5_4:60275316-60275335 Msa0861090:intron 65.0%
ATCCCGCCATCCACTAGCCG+GGG - chr5_4:60275398-60275417 None:intergenic 65.0%
!! CGGCTAGTGGATGGCGGGAT+TGG + chr5_4:60275398-60275417 Msa0861090:intron 65.0%
!! TTGCACGGTGTTGCTGCCCC+TGG + chr5_4:60279094-60279113 Msa0861090:three_prime_UTR 65.0%
! TGGCCCCGGCTAGTGGATGG+CGG + chr5_4:60275392-60275411 Msa0861090:intron 70.0%
!! GATGGCGGGATTGGTCCCCC+CGG + chr5_4:60275407-60275426 Msa0861090:intron 70.0%
! GGCCCCGGCTAGTGGATGGC+GGG + chr5_4:60275393-60275412 Msa0861090:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60274684 60279480 60274684 ID=Msa0861090;Name=Msa0861090
chr5_4 mRNA 60274684 60279480 60274684 ID=Msa0861090-mRNA-1;Parent=Msa0861090;Name=Msa0861090-mRNA-1;_AED=0.07;_eAED=0.07;_QI=326|0.5|0.8|0.8|0.75|0.6|5|471|308
chr5_4 exon 60274684 60274981 60274684 ID=Msa0861090-mRNA-1:exon:18612;Parent=Msa0861090-mRNA-1
chr5_4 exon 60275596 60276280 60275596 ID=Msa0861090-mRNA-1:exon:18613;Parent=Msa0861090-mRNA-1
chr5_4 exon 60276404 60276475 60276404 ID=Msa0861090-mRNA-1:exon:18614;Parent=Msa0861090-mRNA-1
chr5_4 exon 60276878 60276994 60276878 ID=Msa0861090-mRNA-1:exon:18615;Parent=Msa0861090-mRNA-1
chr5_4 exon 60278929 60279480 60278929 ID=Msa0861090-mRNA-1:exon:18616;Parent=Msa0861090-mRNA-1
chr5_4 five_prime_UTR 60274684 60274981 60274684 ID=Msa0861090-mRNA-1:five_prime_utr;Parent=Msa0861090-mRNA-1
chr5_4 five_prime_UTR 60275596 60275623 60275596 ID=Msa0861090-mRNA-1:five_prime_utr;Parent=Msa0861090-mRNA-1
chr5_4 CDS 60275624 60276280 60275624 ID=Msa0861090-mRNA-1:cds;Parent=Msa0861090-mRNA-1
chr5_4 CDS 60276404 60276475 60276404 ID=Msa0861090-mRNA-1:cds;Parent=Msa0861090-mRNA-1
chr5_4 CDS 60276878 60276994 60276878 ID=Msa0861090-mRNA-1:cds;Parent=Msa0861090-mRNA-1
chr5_4 CDS 60278929 60279009 60278929 ID=Msa0861090-mRNA-1:cds;Parent=Msa0861090-mRNA-1
chr5_4 three_prime_UTR 60279010 60279480 60279010 ID=Msa0861090-mRNA-1:three_prime_utr;Parent=Msa0861090-mRNA-1
Gene Sequence

>Msa0861090

ATGGGGATTCAAACAATGGGTTCTCAAAGTAATGGGCAACAGTCTCATTTACAGGCTAATCAGTTAGTTAAGCAAAATTCATGGTATGGTCTAACTCTTGATGAGGTTAATAGTCTACTAGGAGATTTGGGGAAGCCGTTAGGGAGCATGAATCTTGACGAGCTTCTTCAGAATGTGTGGACTGCTGAAGGAAATAAGGTTGTAGGGATGGAGAGTGAGCAGGTTTCGTCATCGTCTTCTCTTCAACGGCAGGCTAGTATGACGTTGGCTCGTGCTTTGAGTGGGAAGACGGTGGATGATGTATGGAGAGAAATCCAGCTAGGTCAGAAGAAACAATATGGAGACGATGTGAAAGTTGAGGATAGGGAAATGGGTCTCGGTGGTACGACTTTGGAAGATTTTTTAGTGCAAGCAGGGCTTTTTGCTGGAGCTTCTATTAGTCCGACGGTGGGGTTGGATGCAATGGATACCGCTATTCCTCAAAGCTTTCAACCGAAAACAAGCTTGGTATCCTCTTCTTCAATTAGTAGTTTGTCGGATGCAAAATCAGGTCGCAAAAGGGATGCTCCGGATGCATATGAGAAGGCTTTGGAAAGGAGGCTGAGAAGGAAAATCAAGAATAGGGAATCTGCCGCGCGTTCACGTGCAAGAAAACAGGCTTACCATAATGAACTGGTTACCAAGGTTACTCTGCTAGAACAGCAAAATATGCAGCTCAAGAAAGAGAAGGAATTTCCTTCAGACCTCAGTCCTACCAGGAATAAAACAGAAAGGCCAATTCCTTCAGACCTTCTCAAATATGGACTGAGTGACAGAGTGAAGCAAAGAACCACTCCAAGTTTAGAGGAGTTTGAGCAGGGGCTACAACCTGAATCATCACCTGAACCTAAATACCGTCTTCGAAGAGTAAGTTCTGCCCTTTTCTGA
Protein sequence

>Msa0861090

MGIQTMGSQSNGQQSHLQANQLVKQNSWYGLTLDEVNSLLGDLGKPLGSMNLDELLQNVWTAEGNKVVGMESEQVSSSSSLQRQASMTLARALSGKTVDDVWREIQLGQKKQYGDDVKVEDREMGLGGTTLEDFLVQAGLFAGASISPTVGLDAMDTAIPQSFQPKTSLVSSSSISSLSDAKSGRKRDAPDAYEKALERRLRRKIKNRESAARSRARKQAYHNELVTKVTLLEQQNMQLKKEKEFPSDLSPTRNKTERPIPSDLLKYGLSDRVKQRTTPSLEEFEQGLQPESSPEPKYRLRRVSSALF*