AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1203050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203050 MtrunA17_Chr8g0373511 94.653 505 4 4 1 503 1 484 0.0 886
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203050 AT3G50690.1 55.789 475 162 8 9 479 1 431 6.55e-103 316

Find 207 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATACGATTTGGTATTTAA+TGG 0.244192 8_1:-56805696 Msa1203050:CDS
AATAAATTTAAGATAGAAAC+TGG 0.257460 8_1:+56802285 None:intergenic
TTGAGCTTGATGACAATATA+AGG 0.265721 8_1:-56802264 Msa1203050:three_prime_UTR
TCGAAAGATGCTGAAGATTC+TGG 0.268201 8_1:+56805537 None:intergenic
GTCTATGTTTGCTTGTAAAA+AGG 0.269253 8_1:-56802540 Msa1203050:three_prime_UTR
GATCAAGTCGTTGAAGTATT+TGG 0.277626 8_1:-56805246 Msa1203050:CDS
CGTTAAAATTCGTAGTGTTT+TGG 0.287432 8_1:-56805732 Msa1203050:five_prime_UTR
GGAGCTTGGTTGGTGATTCT+TGG 0.294608 8_1:-56802519 Msa1203050:three_prime_UTR
TTTAAGACATGCACGATTGA+TGG 0.303552 8_1:+56802083 None:intergenic
ATCTTGATTTATCGAATAAT+AGG 0.309822 8_1:-56805382 Msa1203050:CDS
AGACTTTGGTGCTGGATATC+TGG 0.318154 8_1:-56803098 Msa1203050:CDS
ATCATTGTCCCTCTTCCTCT+TGG 0.319916 8_1:+56802922 None:intergenic
GGTATTTAATGGATGAGATC+TGG 0.332560 8_1:-56805685 Msa1203050:CDS
TGTGGATTTCTTTGATTTAG+TGG 0.344103 8_1:-56801828 Msa1203050:three_prime_UTR
CGTGTATGAGATATACGATT+TGG 0.346866 8_1:-56805706 Msa1203050:exon
TCCACAATATAGGCATATTA+TGG 0.347540 8_1:+56801765 None:intergenic
TGGCACCCAACTTGCTTCAT+AGG 0.352525 8_1:+56802363 None:intergenic
GATGACGATGATGAGGATTC+TGG 0.355799 8_1:-56804900 Msa1203050:CDS
GTGTGGTCAATGGTGCTTCT+TGG 0.358202 8_1:+56802850 None:intergenic
GTTTCTCTGCTTCCATTACT+TGG 0.365607 8_1:+56802786 None:intergenic
GGGTTAAGGATTATCGATCT+AGG 0.372768 8_1:-56805280 Msa1203050:CDS
TCTAGCCACGTGGGTTAGTT+TGG 0.374378 8_1:-56802054 Msa1203050:three_prime_UTR
ACAATTGCATACACAATTAG+AGG 0.375271 8_1:+56802184 None:intergenic
AACTGGCCACGTCAATATAA+TGG 0.389767 8_1:+56802343 None:intergenic
GAGGAAGATGAGGAGGATCC+GGG 0.389794 8_1:-56805128 Msa1203050:CDS
AAATCTGTGTTCCACAATAT+AGG 0.396067 8_1:+56801755 None:intergenic
TTCTGCAAACTCCGCAGCCT+CGG 0.398831 8_1:+56805479 None:intergenic
GGAGGAAGATGAGGAGGATC+CGG 0.400052 8_1:-56805129 Msa1203050:CDS
GAACATGACATAATTTATAA+TGG 0.401537 8_1:+56802826 None:intergenic
TCATTGTCCCTCTTCCTCTT+GGG 0.401858 8_1:+56802923 None:intergenic
GAGGAGATTGATGAGGAAGA+GGG 0.403055 8_1:-56804876 Msa1203050:CDS
ACGTCCTTGTACACACTTAA+CGG 0.405028 8_1:+56805589 None:intergenic
TGTATGAGTGTCCTGTTACT+AGG 0.408619 8_1:-56805301 Msa1203050:CDS
GATTCTGGAACCTTTCTAGA+AGG 0.409114 8_1:+56805552 None:intergenic
GTATGAGTGTCCTGTTACTA+GGG 0.412401 8_1:-56805300 Msa1203050:CDS
GGGCATAGTGAAGGTGTTGA+TGG 0.414206 8_1:-56805053 Msa1203050:CDS
AGTTGAATTTGTCTGATAAC+CGG 0.414477 8_1:-56805457 Msa1203050:CDS
CCGGGGAGCGGTGAGATTGA+TGG 0.414886 8_1:-56805110 Msa1203050:CDS
AAACGAAAATTGAAGATTGA+AGG 0.415127 8_1:+56805831 None:intergenic
GTGTCCTGTTACTAGGGTTA+AGG 0.418557 8_1:-56805294 Msa1203050:CDS
TAATCCTTAACCCTAGTAAC+AGG 0.421119 8_1:+56805290 None:intergenic
GTTGAAGTATTTGGATAAGA+TGG 0.429276 8_1:-56805237 Msa1203050:CDS
TGTGGCAATAATTTATGAAC+TGG 0.429557 8_1:+56802326 None:intergenic
ACAATATAAGGAGAAAATAT+TGG 0.430035 8_1:-56802252 Msa1203050:three_prime_UTR
GTATTTAATGGATGAGATCT+GGG 0.434647 8_1:-56805684 Msa1203050:CDS
GGTTAATGGGGTGAGTCATC+AGG 0.434758 8_1:-56804961 Msa1203050:CDS
GTGGATTTCTTTGATTTAGT+GGG 0.435213 8_1:-56801827 Msa1203050:three_prime_UTR
TCATCCTCCTCAACATCAAC+CGG 0.447315 8_1:+56804918 None:intergenic
GGTCAATGGTGCTTCTTGGA+TGG 0.448376 8_1:+56802854 None:intergenic
CACCACCGAGCCTTCTAGAA+AGG 0.454576 8_1:-56805562 Msa1203050:CDS
AAGTTAATTCCATCTCTGAT+TGG 0.460608 8_1:+56801947 None:intergenic
GATGAGGAGGATCCGGGGAG+CGG 0.463588 8_1:-56805122 Msa1203050:CDS
CTGAGCCTGAGAGTACTTCT+GGG 0.464067 8_1:-56804725 Msa1203050:CDS
ACTCCAACCCTCCGGCGATC+CGG 0.467299 8_1:+56805438 None:intergenic
CATGAGCAAGGGGAGGAAGA+TGG 0.469155 8_1:-56804669 Msa1203050:CDS
ATCATAACGAAATATCCGTT+AGG 0.469870 8_1:-56805808 Msa1203050:five_prime_UTR
AGAGCATCATCCTGTCCAAC+TGG 0.472880 8_1:+56803070 None:intergenic
AGAGGAGATTGATGAGGAAG+AGG 0.475352 8_1:-56804877 Msa1203050:CDS
CACAATTAGAGGGGCCCCAT+TGG 0.477493 8_1:+56802195 None:intergenic
ATGCCAGGTAATGTACCAAT+GGG 0.477615 8_1:-56802210 Msa1203050:three_prime_UTR
GCACGAACGTTAACACTTGA+CGG 0.478271 8_1:-56805614 Msa1203050:CDS
TAAATAGAGAATGAAGGGAT+TGG 0.479234 8_1:+56805891 None:intergenic
TCATAACGAAATATCCGTTA+GGG 0.480146 8_1:-56805807 Msa1203050:five_prime_UTR
TGTTCATAAGCACTCCTTGA+GGG 0.483042 8_1:-56801798 Msa1203050:three_prime_UTR
TCTGCAAACTCCGCAGCCTC+GGG 0.486466 8_1:+56805480 None:intergenic
GAACGTTGGTGTTTCGTCGT+TGG 0.487282 8_1:-56805510 Msa1203050:CDS
TCTGGTTCAGCCAGTTGGAC+AGG 0.488627 8_1:-56803080 Msa1203050:CDS
GGATGATAATGAGGATAATG+AGG 0.491635 8_1:-56805171 Msa1203050:CDS
GGATGATGAGGATGTGGTGG+AGG 0.492011 8_1:-56804853 Msa1203050:CDS
CGAAGATGGTGAAGAAGAAG+AGG 0.493363 8_1:-56803011 Msa1203050:CDS
AGGAGGTGACGGAGAGTTCG+AGG 0.493792 8_1:-56804989 Msa1203050:CDS
ATGATTCCTATGAAGCAAGT+TGG 0.494305 8_1:-56802369 Msa1203050:three_prime_UTR
GGGGTGAGTCATCAGGAGAA+TGG 0.495267 8_1:-56804954 Msa1203050:CDS
GATAGTGATGATGATGAAGA+TGG 0.496649 8_1:-56804816 Msa1203050:CDS
TGATTCCTATGAAGCAAGTT+GGG 0.496824 8_1:-56802368 Msa1203050:three_prime_UTR
GGTTAAGGATTATCGATCTA+GGG 0.497261 8_1:-56805279 Msa1203050:CDS
GAGCGGTGAGATTGATGGAG+GGG 0.499818 8_1:-56805105 Msa1203050:CDS
GGGTGAGTCATCAGGAGAAT+GGG 0.502342 8_1:-56804953 Msa1203050:CDS
GCTTGGTTGGTGATTCTTGG+AGG 0.503613 8_1:-56802516 Msa1203050:three_prime_UTR
GGCCCCATTGGTACATTACC+TGG 0.504726 8_1:+56802207 None:intergenic
AGGAGATTGATGAGGAAGAG+GGG 0.505317 8_1:-56804875 Msa1203050:CDS
CTTCACATCCCAAGAGGAAG+AGG 0.506682 8_1:-56802931 Msa1203050:CDS
GCTGTGGAAACGGCGTTAGA+AGG 0.507491 8_1:-56805656 Msa1203050:CDS
CTGGGAGAAAGCTGTGGAAA+CGG 0.511218 8_1:-56805666 Msa1203050:CDS
CTTGGTTGGTGATTCTTGGA+GGG 0.515441 8_1:-56802515 Msa1203050:three_prime_UTR
GTCATGTTCATGTTCTGTGA+TGG 0.516793 8_1:-56802812 Msa1203050:three_prime_UTR
TGCTGAGGAAAATGAGAGGC+CGG 0.519348 8_1:-56805213 Msa1203050:CDS
GATTTCTTTGATTTAGTGGG+AGG 0.520836 8_1:-56801824 Msa1203050:three_prime_UTR
TGTTCTATCTAAAACTGTTG+AGG 0.522049 8_1:+56802764 None:intergenic
TGAGGAGAGTGATGCTGATG+AGG 0.523007 8_1:-56805009 Msa1203050:CDS
TGGAGCAGTTCCCGAGGCTG+CGG 0.525753 8_1:-56805490 Msa1203050:CDS
CAGGATGATGCTCTCAATGA+TGG 0.526078 8_1:-56803061 Msa1203050:CDS
CCATCAATCTCACCGCTCCC+CGG 0.526620 8_1:+56805110 None:intergenic
GATGAAGACGACGATGATGA+TGG 0.529486 8_1:-56804591 Msa1203050:CDS
GGATATCTGGTTCAGCCAGT+TGG 0.529575 8_1:-56803085 Msa1203050:CDS
CAGGAGGAAGACTTTGGTGC+TGG 0.529748 8_1:-56803106 Msa1203050:CDS
TTGGAGTATTTAGTCGAAGC+GGG 0.533831 8_1:-56805422 Msa1203050:CDS
CATCTTTCGATTGCGAACGT+TGG 0.535578 8_1:-56805524 Msa1203050:CDS
TGATGAGGAGGAAGATGAGG+AGG 0.535721 8_1:-56805135 Msa1203050:CDS
GTGGAGAATGGGCATAGTGA+AGG 0.537124 8_1:-56805062 Msa1203050:CDS
ATAGTGATGATGATGAAGAT+GGG 0.538505 8_1:-56804815 Msa1203050:CDS
AACCGCCATCTCCTCTTCAC+CGG 0.538747 8_1:+56804623 None:intergenic
TAACTACAGGAGGAAGACTT+TGG 0.538950 8_1:-56803112 Msa1203050:intron
GGAGATTGATGAGGAAGAGG+GGG 0.542720 8_1:-56804874 Msa1203050:CDS
CTTCCTCTTGGGATGTGAAG+AGG 0.543179 8_1:+56802934 None:intergenic
GAAGATGACAATGGAGAGAC+CGG 0.543571 8_1:-56804642 Msa1203050:CDS
GGAGAGTGATGATGAGGAAG+AGG 0.547227 8_1:-56805192 Msa1203050:CDS
TGTTGAGCCGGTTGATGTTG+AGG 0.548559 8_1:-56804925 Msa1203050:CDS
AGATCGATGGGCATGAGCAA+GGG 0.552523 8_1:-56804680 Msa1203050:CDS
GGAGCTGCTGACATCGATGA+TGG 0.552690 8_1:-56803040 Msa1203050:CDS
TTGTCTGATAACCGGATCGC+CGG 0.553043 8_1:-56805449 Msa1203050:CDS
GAATGGGTTTCATGTTGAGC+CGG 0.553635 8_1:-56804937 Msa1203050:CDS
GACTAAATACTCCAACCCTC+CGG 0.554197 8_1:+56805430 None:intergenic
CTGTGATGGCTTCCAAGTAA+TGG 0.554247 8_1:-56802798 Msa1203050:three_prime_UTR
TGGAACCTTTCTAGAAGGCT+CGG 0.556225 8_1:+56805557 None:intergenic
GATGGAGATGAAGATGACAA+TGG 0.557331 8_1:-56804651 Msa1203050:CDS
GGATGATGAAAATGATGAGG+AGG 0.557963 8_1:-56805147 Msa1203050:CDS
CGGTGAGATTGATGGAGGGG+AGG 0.558735 8_1:-56805102 Msa1203050:CDS
GAGATCGATGGGCATGAGCA+AGG 0.559227 8_1:-56804681 Msa1203050:CDS
TCTTCCTCATCATCACTCTC+CGG 0.560355 8_1:+56805194 None:intergenic
ACTAGCTTCACCTGCGCCAA+CGG 0.560946 8_1:+56805335 None:intergenic
AAATGATGAGGAGGAAGATG+AGG 0.561013 8_1:-56805138 Msa1203050:CDS
ACCATAATATGCCTATATTG+TGG 0.561128 8_1:-56801766 Msa1203050:three_prime_UTR
TGTTGATGCTGATGAGGATG+AGG 0.561346 8_1:-56805027 Msa1203050:CDS
TGATTCTTGGAGGGAAGCAA+AGG 0.561431 8_1:-56802506 Msa1203050:three_prime_UTR
GTCTTAATAGTCACAATGCC+AGG 0.562235 8_1:-56802225 Msa1203050:three_prime_UTR
CCTCTTGGGATGTGAAGAGG+CGG 0.566160 8_1:+56802937 None:intergenic
GCAGGTGAAGCTAGTTTCGT+TGG 0.567872 8_1:-56805327 Msa1203050:CDS
AGGAAGATGAGGAGGATCCG+GGG 0.569429 8_1:-56805127 Msa1203050:CDS
AATGCCAGGTAATGTACCAA+TGG 0.570465 8_1:-56802211 Msa1203050:three_prime_UTR
TTGTCAGATTGCTGAAGAGA+AGG 0.571766 8_1:-56804423 Msa1203050:intron
ATTGATGGAAAATGCTGTGT+TGG 0.572498 8_1:+56802098 None:intergenic
GATGAGGTGGATAATGATGA+AGG 0.573969 8_1:-56804756 Msa1203050:CDS
GGAGGTGACGGAGAGTTCGA+GGG 0.575242 8_1:-56804988 Msa1203050:CDS
CAATGGAGAGACCGGTGAAG+AGG 0.576417 8_1:-56804634 Msa1203050:CDS
TGAGGAAGAGGATGATAATG+AGG 0.576584 8_1:-56805180 Msa1203050:CDS
AGAGACCGGTGAAGAGGAGA+TGG 0.577059 8_1:-56804628 Msa1203050:CDS
TGAGAGTACTTCTGGGCGGT+TGG 0.577237 8_1:-56804718 Msa1203050:CDS
GGCATTGTGACTATTAAGAC+GGG 0.577907 8_1:+56802228 None:intergenic
AACCGCCCAGAAGTACTCTC+AGG 0.581186 8_1:+56804720 None:intergenic
AGTACTGAAGGTGAGATCGA+TGG 0.584692 8_1:-56804693 Msa1203050:CDS
GATTCTTGGAGGGAAGCAAA+GGG 0.584963 8_1:-56802505 Msa1203050:three_prime_UTR
TTCTGGAGAGGAGATTGATG+AGG 0.585807 8_1:-56804883 Msa1203050:CDS
GGTTGTAAATAGAGAATGAA+GGG 0.587050 8_1:+56805886 None:intergenic
GAGGTGACGGAGAGTTCGAG+GGG 0.587907 8_1:-56804987 Msa1203050:CDS
GTACTGAAGGTGAGATCGAT+GGG 0.588842 8_1:-56804692 Msa1203050:CDS
TGGCATTGTGACTATTAAGA+CGG 0.589719 8_1:+56802227 None:intergenic
CTCTTGGGATGTGAAGAGGC+GGG 0.589840 8_1:+56802938 None:intergenic
GGGCGGTTGGTGAGTACTGA+AGG 0.591868 8_1:-56804705 Msa1203050:CDS
ATGAGGTGGATAATGATGAA+GGG 0.592895 8_1:-56804755 Msa1203050:CDS
GGAGCGGTGAGATTGATGGA+GGG 0.593809 8_1:-56805106 Msa1203050:CDS
TGGAGTTGTTGATGCTGATG+AGG 0.595509 8_1:-56805033 Msa1203050:CDS
AGAGCTAAGCCAATCAGAGA+TGG 0.596560 8_1:-56801956 Msa1203050:three_prime_UTR
CAATTGCATACACAATTAGA+GGG 0.596683 8_1:+56802185 None:intergenic
CGGTTGTAAATAGAGAATGA+AGG 0.598320 8_1:+56805885 None:intergenic
ATGGTAATGTGTCACCCTCA+AGG 0.598640 8_1:+56801784 None:intergenic
TTATAATGGTGTGTGGTCAA+TGG 0.598793 8_1:+56802840 None:intergenic
CTTTCTAGAAGGCTCGGTGG+TGG 0.598794 8_1:+56805563 None:intergenic
GATGATGGAGAAAACGAAGA+TGG 0.599556 8_1:-56803025 Msa1203050:CDS
CTGATAACCGGATCGCCGGA+GGG 0.599805 8_1:-56805445 Msa1203050:CDS
TGAGGTGGATAATGATGAAG+GGG 0.600478 8_1:-56804754 Msa1203050:CDS
GGCGCCGTTAAGTGTGTACA+AGG 0.600946 8_1:-56805593 Msa1203050:CDS
GGGAGCGGTGAGATTGATGG+AGG 0.601507 8_1:-56805107 Msa1203050:CDS
CATCAAGCTAGCTTGAGGTG+TGG 0.602723 8_1:-56801846 Msa1203050:three_prime_UTR
CGTCGTTGGAGCAGTTCCCG+AGG 0.608969 8_1:-56805496 Msa1203050:CDS
TGATAATGAGGATAATGAGG+AGG 0.612957 8_1:-56805168 Msa1203050:CDS
GAGGCCGGAGAGTGATGATG+AGG 0.619379 8_1:-56805198 Msa1203050:CDS
TTTGGATAAGATGGATGCTG+AGG 0.623083 8_1:-56805228 Msa1203050:CDS
TGATGCTGATGAGGAGGTGA+CGG 0.625829 8_1:-56805000 Msa1203050:CDS
GATCGATGGGCATGAGCAAG+GGG 0.625899 8_1:-56804679 Msa1203050:CDS
CAATGATGATGAAGCTGATG+AGG 0.627438 8_1:-56802906 Msa1203050:CDS
TTGTTCATAAGCACTCCTTG+AGG 0.630631 8_1:-56801799 Msa1203050:three_prime_UTR
ATTATTGCCACATTGTTACG+TGG 0.633384 8_1:-56802315 Msa1203050:three_prime_UTR
ACGAATTTAACAAACCCTAA+CGG 0.636315 8_1:+56805793 None:intergenic
TTCACATCCCAAGAGGAAGA+GGG 0.638573 8_1:-56802930 Msa1203050:CDS
GTTGGAGTATTTAGTCGAAG+CGG 0.642635 8_1:-56805423 Msa1203050:CDS
GGAGAGTGATGCTGATGAGG+AGG 0.643217 8_1:-56805006 Msa1203050:CDS
GTTAACATCAAGCTAGCTTG+AGG 0.643914 8_1:-56801851 Msa1203050:three_prime_UTR
GACCGGTGAAGAGGAGATGG+CGG 0.645047 8_1:-56804625 Msa1203050:CDS
CCGCCTCTTCACATCCCAAG+AGG 0.646330 8_1:-56802937 Msa1203050:CDS
TGATGACGATGATGCTCAAG+AGG 0.646390 8_1:-56802969 Msa1203050:CDS
CGATGATGAGGATTCTGGAG+AGG 0.651757 8_1:-56804895 Msa1203050:CDS
TGAGGAGGATGACGATGATG+AGG 0.651984 8_1:-56804907 Msa1203050:CDS
AGTTTGCGTGACGCACACGC+AGG 0.652384 8_1:-56801891 Msa1203050:three_prime_UTR
GGAGGATGATGAAAATGATG+AGG 0.656411 8_1:-56805150 Msa1203050:CDS
CGATGGGCATGAGCAAGGGG+AGG 0.658907 8_1:-56804676 Msa1203050:CDS
AAATTGAAAATTGAAATCAA+CGG 0.659103 8_1:+56805865 None:intergenic
TGGATGCTGAGGAAAATGAG+AGG 0.665010 8_1:-56805217 Msa1203050:CDS
TGAGATCTGGGAGAAAGCTG+TGG 0.666233 8_1:-56805672 Msa1203050:CDS
TAGTGATGATGATGAAGATG+GGG 0.670653 8_1:-56804814 Msa1203050:CDS
GATAAATCCACGTAACAATG+TGG 0.671642 8_1:+56802308 None:intergenic
TGATGACGAGGACGATGATG+AGG 0.680930 8_1:-56804772 Msa1203050:CDS
TGGGTGCCATTATATTGACG+TGG 0.687025 8_1:-56802349 Msa1203050:three_prime_UTR
TGACGAGGACGATGATGAGG+TGG 0.690905 8_1:-56804769 Msa1203050:CDS
ATAAATTTAAGATAGAAACT+GGG 0.693167 8_1:+56802286 None:intergenic
AGGTGACGGAGAGTTCGAGG+GGG 0.693647 8_1:-56804986 Msa1203050:CDS
GATGATGGAGATGATGACGA+TGG 0.697772 8_1:-56804576 Msa1203050:CDS
ACATAATTTATAATGGTGTG+TGG 0.700752 8_1:+56802833 None:intergenic
AGATGGGGTTGAGTTTGACG+AGG 0.701989 8_1:-56804799 Msa1203050:CDS
TGAGCCGGTTGATGTTGAGG+AGG 0.707857 8_1:-56804922 Msa1203050:CDS
GCTGTGTTGGATGCTTGTTG+AGG 0.710066 8_1:+56802111 None:intergenic
TGACGAGGATGATGATGACG+AGG 0.711417 8_1:-56804784 Msa1203050:CDS
TTGGGATGTGAAGAGGCGGG+AGG 0.711668 8_1:+56802941 None:intergenic
AGCCTGAGAGTACTTCTGGG+CGG 0.715192 8_1:-56804722 Msa1203050:CDS
AACCTTTCTAGAAGGCTCGG+TGG 0.715516 8_1:+56805560 None:intergenic
AATTGCATACACAATTAGAG+GGG 0.734543 8_1:+56802186 None:intergenic
TGCCAGGTAATGTACCAATG+GGG 0.757265 8_1:-56802209 Msa1203050:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGAACAATATTTTTTTTA+AGG - chr8_1:56803452-56803471 Msa1203050:intron 10.0%
!! GAAATTGAATATTAATATAT+TGG - chr8_1:56803748-56803767 Msa1203050:intron 10.0%
!!! GTTATCATTTTTAAAATTTT+TGG - chr8_1:56803789-56803808 Msa1203050:intron 10.0%
!! AAATTTAATTAATTTAGCAA+CGG + chr8_1:56805029-56805048 None:intergenic 10.0%
!! AAATTGAAAATTGAAATCAA+CGG + chr8_1:56801775-56801794 None:intergenic 15.0%
!!! ATAAATTTAAGATAGAAACT+GGG + chr8_1:56805354-56805373 None:intergenic 15.0%
!!! AATAAATTTAAGATAGAAAC+TGG + chr8_1:56805355-56805374 None:intergenic 15.0%
!!! TTTTTGATTTTGCAGATTTT+TGG + chr8_1:56801690-56801709 None:intergenic 20.0%
!!! ATATACGATTTGGTATTTAA+TGG - chr8_1:56801941-56801960 Msa1203050:three_prime_UTR 20.0%
!! ATCTTGATTTATCGAATAAT+AGG - chr8_1:56802255-56802274 Msa1203050:three_prime_UTR 20.0%
!! AACAGGCAAATAAAAATAAT+TGG + chr8_1:56803337-56803356 None:intergenic 20.0%
!!! TTACTTTTTAAAGTGAAAAC+AGG + chr8_1:56803354-56803373 None:intergenic 20.0%
!!! GTTGTTGTGATATTTTATAT+CGG - chr8_1:56803400-56803419 Msa1203050:intron 20.0%
!! AAAATATTGTTCATAAGTCA+AGG + chr8_1:56803447-56803466 None:intergenic 20.0%
!! AAAACAATGAAATATAGCAA+GGG + chr8_1:56803693-56803712 None:intergenic 20.0%
!! AAAAACAATGAAATATAGCA+AGG + chr8_1:56803694-56803713 None:intergenic 20.0%
!! TTGAATATTAATATATTGGC+TGG - chr8_1:56803752-56803771 Msa1203050:intron 20.0%
!!! TTAGTGATTTGTTCAATTTT+TGG - chr8_1:56803914-56803933 Msa1203050:intron 20.0%
!!! ATTTTCCAATATACAATTCA+AGG + chr8_1:56804009-56804028 None:intergenic 20.0%
!!! TTCTAATTATGATGTTTCTA+CGG - chr8_1:56804067-56804086 Msa1203050:intron 20.0%
!!! TACTTGTATATTGGTTTTTT+TGG - chr8_1:56804198-56804217 Msa1203050:intron 20.0%
!!! ACTTGTATATTGGTTTTTTT+GGG - chr8_1:56804199-56804218 Msa1203050:intron 20.0%
!! GAACATGACATAATTTATAA+TGG + chr8_1:56804814-56804833 None:intergenic 20.0%
!!! GTTCGAGAAATTTTTTTAAA+AGG + chr8_1:56805164-56805183 None:intergenic 20.0%
!! ACAATATAAGGAGAAAATAT+TGG - chr8_1:56805385-56805404 Msa1203050:CDS 20.0%
!! TACTAATGTCTAACAAAAAA+TGG - chr8_1:56805478-56805497 Msa1203050:CDS 20.0%
!!! TGGTTTTTTAATCTTCATTT+TGG - chr8_1:56805603-56805622 Msa1203050:CDS 20.0%
!!! TTTTTAATCTTCATTTTGGA+CGG - chr8_1:56805607-56805626 Msa1203050:CDS 20.0%
!!! TTTTGTTTTGTACTAGTTTA+TGG - chr8_1:56805985-56806004 Msa1203050:five_prime_UTR 20.0%
! AAACGAAAATTGAAGATTGA+AGG + chr8_1:56801809-56801828 None:intergenic 25.0%
!! GACCTTTTTGTATTAATTGT+TGG - chr8_1:56803625-56803644 Msa1203050:intron 25.0%
! CACCAACAATTAATACAAAA+AGG + chr8_1:56803630-56803649 None:intergenic 25.0%
! AAACAATGAAATATAGCAAG+GGG + chr8_1:56803692-56803711 None:intergenic 25.0%
!! AATATTAATATATTGGCTGG+TGG - chr8_1:56803755-56803774 Msa1203050:intron 25.0%
!! CAACTAAAGAAGCATAATAA+TGG + chr8_1:56803859-56803878 None:intergenic 25.0%
!!! ATTTGTTCAATTTTTGGTAC+TGG - chr8_1:56803920-56803939 Msa1203050:intron 25.0%
!! ATTTTATGTTGCAGATTACT+TGG - chr8_1:56803965-56803984 Msa1203050:intron 25.0%
!! CTTTTCCTTGAATTGTATAT+TGG - chr8_1:56804001-56804020 Msa1203050:intron 25.0%
! TAAAATCAAGCAAATAAGAC+AGG + chr8_1:56804180-56804199 None:intergenic 25.0%
!! GCTTGATTTTACTTGTATAT+TGG - chr8_1:56804189-56804208 Msa1203050:intron 25.0%
! ACATAATTTATAATGGTGTG+TGG + chr8_1:56804807-56804826 None:intergenic 25.0%
!!! AACAGTTTTAGATAGAACAA+TGG - chr8_1:56804877-56804896 Msa1203050:CDS 25.0%
! AATGTCTAACAAAAAATGGA+TGG - chr8_1:56805482-56805501 Msa1203050:CDS 25.0%
! ACGAATTCGATCAAAAAATA+TGG - chr8_1:56805931-56805950 Msa1203050:five_prime_UTR 25.0%
!!! TTTTGTACTAGTTTATGGTT+GGG - chr8_1:56805990-56806009 Msa1203050:five_prime_UTR 25.0%
TAAATAGAGAATGAAGGGAT+TGG + chr8_1:56801749-56801768 None:intergenic 30.0%
GGTTGTAAATAGAGAATGAA+GGG + chr8_1:56801754-56801773 None:intergenic 30.0%
ATCATAACGAAATATCCGTT+AGG - chr8_1:56801829-56801848 Msa1203050:three_prime_UTR 30.0%
TCATAACGAAATATCCGTTA+GGG - chr8_1:56801830-56801849 Msa1203050:three_prime_UTR 30.0%
ACGAATTTAACAAACCCTAA+CGG + chr8_1:56801847-56801866 None:intergenic 30.0%
! CGTTAAAATTCGTAGTGTTT+TGG - chr8_1:56801905-56801924 Msa1203050:three_prime_UTR 30.0%
! GTATTTAATGGATGAGATCT+GGG - chr8_1:56801953-56801972 Msa1203050:three_prime_UTR 30.0%
AGTTGAATTTGTCTGATAAC+CGG - chr8_1:56802180-56802199 Msa1203050:three_prime_UTR 30.0%
! GTTGAAGTATTTGGATAAGA+TGG - chr8_1:56802400-56802419 Msa1203050:three_prime_UTR 30.0%
! ATAGTGATGATGATGAAGAT+GGG - chr8_1:56802822-56802841 Msa1203050:three_prime_UTR 30.0%
!! GTTTGCTAATTGTTTCTGTT+TGG - chr8_1:56803176-56803195 Msa1203050:intron 30.0%
!!! GATGTTTTCCATTTTTTGTG+TGG - chr8_1:56803306-56803325 Msa1203050:intron 30.0%
ACACTTCAAATTGTAGTATG+AGG + chr8_1:56803587-56803606 None:intergenic 30.0%
!! TGTATTAATTGTTGGTGTTG+TGG - chr8_1:56803633-56803652 Msa1203050:intron 30.0%
AAAACCAGTTCAAAGTCAAA+CGG + chr8_1:56804317-56804336 None:intergenic 30.0%
GTAGGATTACTTGTATCATA+TGG - chr8_1:56804380-56804399 Msa1203050:CDS 30.0%
!! TTGAATTTTGCTGTAACTAC+AGG - chr8_1:56804512-56804531 Msa1203050:intron 30.0%
! TGTTCTATCTAAAACTGTTG+AGG + chr8_1:56804876-56804895 None:intergenic 30.0%
TAGATAGAACAATGGTTAGT+AGG - chr8_1:56804885-56804904 Msa1203050:CDS 30.0%
TAGGAAACAAAATTGTGTGT+TGG - chr8_1:56804939-56804958 Msa1203050:CDS 30.0%
AGGAAACAAAATTGTGTGTT+GGG - chr8_1:56804940-56804959 Msa1203050:CDS 30.0%
GTCTATGTTTGCTTGTAAAA+AGG - chr8_1:56805097-56805116 Msa1203050:CDS 30.0%
!!! AGTTTAATGAGAGCACTTTT+TGG - chr8_1:56805187-56805206 Msa1203050:CDS 30.0%
TGTGGCAATAATTTATGAAC+TGG + chr8_1:56805314-56805333 None:intergenic 30.0%
! TTGAGCTTGATGACAATATA+AGG - chr8_1:56805373-56805392 Msa1203050:CDS 30.0%
AATTGCATACACAATTAGAG+GGG + chr8_1:56805454-56805473 None:intergenic 30.0%
CAATTGCATACACAATTAGA+GGG + chr8_1:56805455-56805474 None:intergenic 30.0%
ACAATTGCATACACAATTAG+AGG + chr8_1:56805456-56805475 None:intergenic 30.0%
AAGTTAATTCCATCTCTGAT+TGG + chr8_1:56805693-56805712 None:intergenic 30.0%
! TTTGCTCTTTTGATGTTATC+AGG - chr8_1:56805711-56805730 Msa1203050:exon 30.0%
! TGTGGATTTCTTTGATTTAG+TGG - chr8_1:56805809-56805828 Msa1203050:five_prime_UTR 30.0%
! GTGGATTTCTTTGATTTAGT+GGG - chr8_1:56805810-56805829 Msa1203050:five_prime_UTR 30.0%
ACCATAATATGCCTATATTG+TGG - chr8_1:56805871-56805890 Msa1203050:five_prime_UTR 30.0%
TCCACAATATAGGCATATTA+TGG + chr8_1:56805875-56805894 None:intergenic 30.0%
AAATCTGTGTTCCACAATAT+AGG + chr8_1:56805885-56805904 None:intergenic 30.0%
!! GTTTTGTACTAGTTTATGGT+TGG - chr8_1:56805989-56806008 Msa1203050:five_prime_UTR 30.0%
CGGTTGTAAATAGAGAATGA+AGG + chr8_1:56801755-56801774 None:intergenic 35.0%
CGTGTATGAGATATACGATT+TGG - chr8_1:56801931-56801950 Msa1203050:three_prime_UTR 35.0%
! GGTATTTAATGGATGAGATC+TGG - chr8_1:56801952-56801971 Msa1203050:three_prime_UTR 35.0%
TAATCCTTAACCCTAGTAAC+AGG + chr8_1:56802350-56802369 None:intergenic 35.0%
GGTTAAGGATTATCGATCTA+GGG - chr8_1:56802358-56802377 Msa1203050:three_prime_UTR 35.0%
!! GATTATCGATCTAGGGTTTT+TGG - chr8_1:56802365-56802384 Msa1203050:three_prime_UTR 35.0%
! GATCAAGTCGTTGAAGTATT+TGG - chr8_1:56802391-56802410 Msa1203050:three_prime_UTR 35.0%
! GGATGATAATGAGGATAATG+AGG - chr8_1:56802466-56802485 Msa1203050:three_prime_UTR 35.0%
! TGATAATGAGGATAATGAGG+AGG - chr8_1:56802469-56802488 Msa1203050:three_prime_UTR 35.0%
! GATAGTGATGATGATGAAGA+TGG - chr8_1:56802821-56802840 Msa1203050:three_prime_UTR 35.0%
! TAGTGATGATGATGAAGATG+GGG - chr8_1:56802823-56802842 Msa1203050:three_prime_UTR 35.0%
ATGAGGTGGATAATGATGAA+GGG - chr8_1:56802882-56802901 Msa1203050:CDS 35.0%
TGGTTAGACCACACAAAAAA+TGG + chr8_1:56803317-56803336 None:intergenic 35.0%
CAAATTGTAGTATGAGGCAA+AGG + chr8_1:56803581-56803600 None:intergenic 35.0%
TGATGTGATGATATGTTCCT+TGG - chr8_1:56803877-56803896 Msa1203050:intron 35.0%
!!! TGTTCAATTTTTGGTACTGG+AGG - chr8_1:56803923-56803942 Msa1203050:intron 35.0%
! ATGTTTGTGATTTGCAAGGT+TGG - chr8_1:56804092-56804111 Msa1203050:intron 35.0%
! TGTTTGTGATTTGCAAGGTT+GGG - chr8_1:56804093-56804112 Msa1203050:intron 35.0%
!!! TTGAGTATCTGTTGTTTTCG+TGG - chr8_1:56804134-56804153 Msa1203050:intron 35.0%
TGAAGCAATCACCATTTGTT+TGG - chr8_1:56804346-56804365 Msa1203050:intron 35.0%
ATATTCACCAGCCAAACAAA+TGG + chr8_1:56804360-56804379 None:intergenic 35.0%
!! AATTTTGCTGTAACTACAGG+AGG - chr8_1:56804515-56804534 Msa1203050:intron 35.0%
TTATAATGGTGTGTGGTCAA+TGG + chr8_1:56804800-56804819 None:intergenic 35.0%
TAGAACAATGGTTAGTAGGT+AGG - chr8_1:56804889-56804908 Msa1203050:CDS 35.0%
TGTTGAACAGAGGACATATT+AGG - chr8_1:56804920-56804939 Msa1203050:CDS 35.0%
AAACAAAATTGTGTGTTGGG+TGG - chr8_1:56804943-56804962 Msa1203050:CDS 35.0%
CAATGTGTATGTAAAGCAGA+GGG + chr8_1:56805006-56805025 None:intergenic 35.0%
TTTGCTTGTAAAAAGGAGCT+TGG - chr8_1:56805104-56805123 Msa1203050:CDS 35.0%
!!! TTAATGAGAGCACTTTTTGG+CGG - chr8_1:56805190-56805209 Msa1203050:CDS 35.0%
CGGCAGAAAAAGGAAAAAAA+AGG - chr8_1:56805210-56805229 Msa1203050:CDS 35.0%
ATGATTCCTATGAAGCAAGT+TGG - chr8_1:56805268-56805287 Msa1203050:CDS 35.0%
TGATTCCTATGAAGCAAGTT+GGG - chr8_1:56805269-56805288 Msa1203050:CDS 35.0%
ATTATTGCCACATTGTTACG+TGG - chr8_1:56805322-56805341 Msa1203050:CDS 35.0%
GATAAATCCACGTAACAATG+TGG + chr8_1:56805332-56805351 None:intergenic 35.0%
TGGCATTGTGACTATTAAGA+CGG + chr8_1:56805413-56805432 None:intergenic 35.0%
ATTGATGGAAAATGCTGTGT+TGG + chr8_1:56805542-56805561 None:intergenic 35.0%
! TTTAAGACATGCACGATTGA+TGG + chr8_1:56805557-56805576 None:intergenic 35.0%
! TAAATTTTCATCTAGCCACG+TGG - chr8_1:56805573-56805592 Msa1203050:CDS 35.0%
! AAATTTTCATCTAGCCACGT+GGG - chr8_1:56805574-56805593 Msa1203050:CDS 35.0%
! GATTTCTTTGATTTAGTGGG+AGG - chr8_1:56805813-56805832 Msa1203050:five_prime_UTR 35.0%
ACGTCCTTGTACACACTTAA+CGG + chr8_1:56802051-56802070 None:intergenic 40.0%
!! GATTCTGGAACCTTTCTAGA+AGG + chr8_1:56802088-56802107 None:intergenic 40.0%
TCGAAAGATGCTGAAGATTC+TGG + chr8_1:56802103-56802122 None:intergenic 40.0%
! GTTGGAGTATTTAGTCGAAG+CGG - chr8_1:56802214-56802233 Msa1203050:three_prime_UTR 40.0%
! TTGGAGTATTTAGTCGAAGC+GGG - chr8_1:56802215-56802234 Msa1203050:three_prime_UTR 40.0%
TGTATGAGTGTCCTGTTACT+AGG - chr8_1:56802336-56802355 Msa1203050:three_prime_UTR 40.0%
GTATGAGTGTCCTGTTACTA+GGG - chr8_1:56802337-56802356 Msa1203050:three_prime_UTR 40.0%
GGGTTAAGGATTATCGATCT+AGG - chr8_1:56802357-56802376 Msa1203050:three_prime_UTR 40.0%
TTTGGATAAGATGGATGCTG+AGG - chr8_1:56802409-56802428 Msa1203050:three_prime_UTR 40.0%
! TGAGGAAGAGGATGATAATG+AGG - chr8_1:56802457-56802476 Msa1203050:three_prime_UTR 40.0%
GGAGGATGATGAAAATGATG+AGG - chr8_1:56802487-56802506 Msa1203050:three_prime_UTR 40.0%
GGATGATGAAAATGATGAGG+AGG - chr8_1:56802490-56802509 Msa1203050:three_prime_UTR 40.0%
AAATGATGAGGAGGAAGATG+AGG - chr8_1:56802499-56802518 Msa1203050:three_prime_UTR 40.0%
GATGAGGTGGATAATGATGA+AGG - chr8_1:56802881-56802900 Msa1203050:CDS 40.0%
TGAGGTGGATAATGATGAAG+GGG - chr8_1:56802883-56802902 Msa1203050:CDS 40.0%
GATGGAGATGAAGATGACAA+TGG - chr8_1:56802986-56803005 Msa1203050:CDS 40.0%
GAAGTGAGATATTCCTTCTC+AGG - chr8_1:56803103-56803122 Msa1203050:CDS 40.0%
AAAAACAAGAGCTCCTGAGA+AGG + chr8_1:56803119-56803138 None:intergenic 40.0%
TTGTCAGATTGCTGAAGAGA+AGG - chr8_1:56803214-56803233 Msa1203050:intron 40.0%
! GAAGAGAAGGCGATGATTTT+TGG - chr8_1:56803227-56803246 Msa1203050:intron 40.0%
ATGTTCCTTGGTCATGTACA+CGG - chr8_1:56803889-56803908 Msa1203050:intron 40.0%
TAATTCCGTGTACATGACCA+AGG + chr8_1:56803897-56803916 None:intergenic 40.0%
GTAGAGTTGTTGTAGCAACA+TGG - chr8_1:56804035-56804054 Msa1203050:intron 40.0%
! GGCTATGTTTGTGATTTGCA+AGG - chr8_1:56804088-56804107 Msa1203050:intron 40.0%
!!! TATCTGTTGTTTTCGTGGAC+TGG - chr8_1:56804139-56804158 Msa1203050:intron 40.0%
TGTTTGGCTGGTGAATATGT+AGG - chr8_1:56804362-56804381 Msa1203050:intron 40.0%
TAACTACAGGAGGAAGACTT+TGG - chr8_1:56804525-56804544 Msa1203050:intron 40.0%
!! GATGATGGAGAAAACGAAGA+TGG - chr8_1:56804612-56804631 Msa1203050:CDS 40.0%
! CAATGATGATGAAGCTGATG+AGG - chr8_1:56804731-56804750 Msa1203050:CDS 40.0%
GTCATGTTCATGTTCTGTGA+TGG - chr8_1:56804825-56804844 Msa1203050:CDS 40.0%
GTTTCTCTGCTTCCATTACT+TGG + chr8_1:56804854-56804873 None:intergenic 40.0%
GGAATTTAGCTGTTGAACAG+AGG - chr8_1:56804910-56804929 Msa1203050:CDS 40.0%
GCAATGTGTATGTAAAGCAG+AGG + chr8_1:56805007-56805026 None:intergenic 40.0%
CTTGTAAAAAGGAGCTTGGT+TGG - chr8_1:56805108-56805127 Msa1203050:CDS 40.0%
AACTGGCCACGTCAATATAA+TGG + chr8_1:56805297-56805316 None:intergenic 40.0%
GGCATTGTGACTATTAAGAC+GGG + chr8_1:56805412-56805431 None:intergenic 40.0%
GTCTTAATAGTCACAATGCC+AGG - chr8_1:56805412-56805431 Msa1203050:CDS 40.0%
AATGCCAGGTAATGTACCAA+TGG - chr8_1:56805426-56805445 Msa1203050:CDS 40.0%
ATGCCAGGTAATGTACCAAT+GGG - chr8_1:56805427-56805446 Msa1203050:CDS 40.0%
AAAAACCAAACTAACCCACG+TGG + chr8_1:56805591-56805610 None:intergenic 40.0%
! GTTAACATCAAGCTAGCTTG+AGG - chr8_1:56805786-56805805 Msa1203050:five_prime_UTR 40.0%
TTGTTCATAAGCACTCCTTG+AGG - chr8_1:56805838-56805857 Msa1203050:five_prime_UTR 40.0%
TGTTCATAAGCACTCCTTGA+GGG - chr8_1:56805839-56805858 Msa1203050:five_prime_UTR 40.0%
GCACGAACGTTAACACTTGA+CGG - chr8_1:56802023-56802042 Msa1203050:three_prime_UTR 45.0%
! TGGAACCTTTCTAGAAGGCT+CGG + chr8_1:56802083-56802102 None:intergenic 45.0%
CATCTTTCGATTGCGAACGT+TGG - chr8_1:56802113-56802132 Msa1203050:three_prime_UTR 45.0%
GACTAAATACTCCAACCCTC+CGG + chr8_1:56802210-56802229 None:intergenic 45.0%
!! TTTTGAAGATCTTGCGCCGT+TGG - chr8_1:56802286-56802305 Msa1203050:three_prime_UTR 45.0%
GTGTCCTGTTACTAGGGTTA+AGG - chr8_1:56802343-56802362 Msa1203050:three_prime_UTR 45.0%
TGGATGCTGAGGAAAATGAG+AGG - chr8_1:56802420-56802439 Msa1203050:three_prime_UTR 45.0%
TCTTCCTCATCATCACTCTC+CGG + chr8_1:56802446-56802465 None:intergenic 45.0%
! GGGAGGAAGATCGAGTTTTT+GGG - chr8_1:56802552-56802571 Msa1203050:intron 45.0%
! GGAGGAAGATCGAGTTTTTG+GGG - chr8_1:56802553-56802572 Msa1203050:intron 45.0%
!!! GAGTTTTTGGGGTGGAGAAT+GGG - chr8_1:56802564-56802583 Msa1203050:intron 45.0%
TGGAGTTGTTGATGCTGATG+AGG - chr8_1:56802604-56802623 Msa1203050:intron 45.0%
TGTTGATGCTGATGAGGATG+AGG - chr8_1:56802610-56802629 Msa1203050:intron 45.0%
! GAATGGGTTTCATGTTGAGC+CGG - chr8_1:56802700-56802719 Msa1203050:intron 45.0%
TCATCCTCCTCAACATCAAC+CGG + chr8_1:56802722-56802741 None:intergenic 45.0%
GATGACGATGATGAGGATTC+TGG - chr8_1:56802737-56802756 Msa1203050:intron 45.0%
! TTCTGGAGAGGAGATTGATG+AGG - chr8_1:56802754-56802773 Msa1203050:intron 45.0%
AGAGGAGATTGATGAGGAAG+AGG - chr8_1:56802760-56802779 Msa1203050:intron 45.0%
GAGGAGATTGATGAGGAAGA+GGG - chr8_1:56802761-56802780 Msa1203050:three_prime_UTR 45.0%
AGGAGATTGATGAGGAAGAG+GGG - chr8_1:56802762-56802781 Msa1203050:three_prime_UTR 45.0%
! AGTACTGAAGGTGAGATCGA+TGG - chr8_1:56802944-56802963 Msa1203050:CDS 45.0%
GTACTGAAGGTGAGATCGAT+GGG - chr8_1:56802945-56802964 Msa1203050:CDS 45.0%
GAAGATGACAATGGAGAGAC+CGG - chr8_1:56802995-56803014 Msa1203050:CDS 45.0%
GATGAAGACGACGATGATGA+TGG - chr8_1:56803046-56803065 Msa1203050:CDS 45.0%
!! GATGATGGAGATGATGACGA+TGG - chr8_1:56803061-56803080 Msa1203050:CDS 45.0%
TACTTTCACCCACCTATGCA+TGG - chr8_1:56803376-56803395 Msa1203050:intron 45.0%
ATCACAACAACGCCATGCAT+AGG + chr8_1:56803391-56803410 None:intergenic 45.0%
TTGTGGAGCTTGTACAACTG+AGG - chr8_1:56803650-56803669 Msa1203050:intron 45.0%
ATATAGCAAGGGGACTAGAG+AGG + chr8_1:56803682-56803701 None:intergenic 45.0%
!! TGTGCCGTTTGACTTTGAAC+TGG - chr8_1:56804310-56804329 Msa1203050:intron 45.0%
GCAATCACCATTTGTTTGGC+TGG - chr8_1:56804350-56804369 Msa1203050:intron 45.0%
!! AGACTTTGGTGCTGGATATC+TGG - chr8_1:56804539-56804558 Msa1203050:intron 45.0%
CAGGATGATGCTCTCAATGA+TGG - chr8_1:56804576-56804595 Msa1203050:CDS 45.0%
CGAAGATGGTGAAGAAGAAG+AGG - chr8_1:56804626-56804645 Msa1203050:CDS 45.0%
! TGATGACGATGATGCTCAAG+AGG - chr8_1:56804668-56804687 Msa1203050:CDS 45.0%
TTCACATCCCAAGAGGAAGA+GGG - chr8_1:56804707-56804726 Msa1203050:CDS 45.0%
TCATTGTCCCTCTTCCTCTT+GGG + chr8_1:56804717-56804736 None:intergenic 45.0%
ATCATTGTCCCTCTTCCTCT+TGG + chr8_1:56804718-56804737 None:intergenic 45.0%
CTGTGATGGCTTCCAAGTAA+TGG - chr8_1:56804839-56804858 Msa1203050:CDS 45.0%
!! CTTGGTTGGTGATTCTTGGA+GGG - chr8_1:56805122-56805141 Msa1203050:CDS 45.0%
TGATTCTTGGAGGGAAGCAA+AGG - chr8_1:56805131-56805150 Msa1203050:CDS 45.0%
GATTCTTGGAGGGAAGCAAA+GGG - chr8_1:56805132-56805151 Msa1203050:CDS 45.0%
!! CACTTTTTGGCGGCAGAAAA+AGG - chr8_1:56805200-56805219 Msa1203050:CDS 45.0%
!! TGGGTGCCATTATATTGACG+TGG - chr8_1:56805288-56805307 Msa1203050:CDS 45.0%
TGCCAGGTAATGTACCAATG+GGG - chr8_1:56805428-56805447 Msa1203050:CDS 45.0%
AGAGCTAAGCCAATCAGAGA+TGG - chr8_1:56805681-56805700 Msa1203050:CDS 45.0%
! ATGGTAATGTGTCACCCTCA+AGG + chr8_1:56805856-56805875 None:intergenic 45.0%
!!! AAATTAATTAAATTTTCAAA+TGG - chr8_1:56805034-56805053 Msa1203050:CDS 5.0%
TGAGATCTGGGAGAAAGCTG+TGG - chr8_1:56801965-56801984 Msa1203050:three_prime_UTR 50.0%
CTGGGAGAAAGCTGTGGAAA+CGG - chr8_1:56801971-56801990 Msa1203050:three_prime_UTR 50.0%
! AACCTTTCTAGAAGGCTCGG+TGG + chr8_1:56802080-56802099 None:intergenic 50.0%
! GAACGTTGGTGTTTCGTCGT+TGG - chr8_1:56802127-56802146 Msa1203050:three_prime_UTR 50.0%
TTGTCTGATAACCGGATCGC+CGG - chr8_1:56802188-56802207 Msa1203050:three_prime_UTR 50.0%
! GCAGGTGAAGCTAGTTTCGT+TGG - chr8_1:56802310-56802329 Msa1203050:three_prime_UTR 50.0%
TGCTGAGGAAAATGAGAGGC+CGG - chr8_1:56802424-56802443 Msa1203050:three_prime_UTR 50.0%
! GGAGAGTGATGATGAGGAAG+AGG - chr8_1:56802445-56802464 Msa1203050:three_prime_UTR 50.0%
TGATGAGGAGGAAGATGAGG+AGG - chr8_1:56802502-56802521 Msa1203050:three_prime_UTR 50.0%
! GGGGAGGAAGATCGAGTTTT+TGG - chr8_1:56802551-56802570 Msa1203050:intron 50.0%
!! GGAAGATCGAGTTTTTGGGG+TGG - chr8_1:56802556-56802575 Msa1203050:intron 50.0%
!!! CGAGTTTTTGGGGTGGAGAA+TGG - chr8_1:56802563-56802582 Msa1203050:intron 50.0%
GTGGAGAATGGGCATAGTGA+AGG - chr8_1:56802575-56802594 Msa1203050:intron 50.0%
!! GGGCATAGTGAAGGTGTTGA+TGG - chr8_1:56802584-56802603 Msa1203050:intron 50.0%
TGAGGAGAGTGATGCTGATG+AGG - chr8_1:56802628-56802647 Msa1203050:intron 50.0%
TGATGCTGATGAGGAGGTGA+CGG - chr8_1:56802637-56802656 Msa1203050:intron 50.0%
GGTTAATGGGGTGAGTCATC+AGG - chr8_1:56802676-56802695 Msa1203050:intron 50.0%
GGGTGAGTCATCAGGAGAAT+GGG - chr8_1:56802684-56802703 Msa1203050:intron 50.0%
! TGTTGAGCCGGTTGATGTTG+AGG - chr8_1:56802712-56802731 Msa1203050:intron 50.0%
TGAGGAGGATGACGATGATG+AGG - chr8_1:56802730-56802749 Msa1203050:intron 50.0%
! CGATGATGAGGATTCTGGAG+AGG - chr8_1:56802742-56802761 Msa1203050:intron 50.0%
GGAGATTGATGAGGAAGAGG+GGG - chr8_1:56802763-56802782 Msa1203050:three_prime_UTR 50.0%
AGATGGGGTTGAGTTTGACG+AGG - chr8_1:56802838-56802857 Msa1203050:exon 50.0%
! TGACGAGGATGATGATGACG+AGG - chr8_1:56802853-56802872 Msa1203050:exon 50.0%
! TGATGACGAGGACGATGATG+AGG - chr8_1:56802865-56802884 Msa1203050:CDS 50.0%
!! CTGAGCCTGAGAGTACTTCT+GGG - chr8_1:56802912-56802931 Msa1203050:CDS 50.0%
AGATCGATGGGCATGAGCAA+GGG - chr8_1:56802957-56802976 Msa1203050:CDS 50.0%
CAACAACGCCATGCATAGGT+GGG + chr8_1:56803387-56803406 None:intergenic 50.0%
ACAACAACGCCATGCATAGG+TGG + chr8_1:56803388-56803407 None:intergenic 50.0%
GAGCTTGTACAACTGAGGCT+TGG - chr8_1:56803655-56803674 Msa1203050:intron 50.0%
! GGATATCTGGTTCAGCCAGT+TGG - chr8_1:56804552-56804571 Msa1203050:intron 50.0%
! AGAGCATCATCCTGTCCAAC+TGG + chr8_1:56804570-56804589 None:intergenic 50.0%
CTTCCTCTTGGGATGTGAAG+AGG + chr8_1:56804706-56804725 None:intergenic 50.0%
CTTCACATCCCAAGAGGAAG+AGG - chr8_1:56804706-56804725 Msa1203050:CDS 50.0%
GGTCAATGGTGCTTCTTGGA+TGG + chr8_1:56804786-56804805 None:intergenic 50.0%
GTGTGGTCAATGGTGCTTCT+TGG + chr8_1:56804790-56804809 None:intergenic 50.0%
ACCTGCATTGAGCACATGAG+CGG + chr8_1:56805079-56805098 None:intergenic 50.0%
!! GGAGCTTGGTTGGTGATTCT+TGG - chr8_1:56805118-56805137 Msa1203050:CDS 50.0%
!! GCTTGGTTGGTGATTCTTGG+AGG - chr8_1:56805121-56805140 Msa1203050:CDS 50.0%
! TGGCACCCAACTTGCTTCAT+AGG + chr8_1:56805277-56805296 None:intergenic 50.0%
! GCTGTGTTGGATGCTTGTTG+AGG + chr8_1:56805529-56805548 None:intergenic 50.0%
!! TCTAGCCACGTGGGTTAGTT+TGG - chr8_1:56805583-56805602 Msa1203050:CDS 50.0%
! CATCAAGCTAGCTTGAGGTG+TGG - chr8_1:56805791-56805810 Msa1203050:five_prime_UTR 50.0%
GCTGTGGAAACGGCGTTAGA+AGG - chr8_1:56801981-56802000 Msa1203050:three_prime_UTR 55.0%
GGCGCCGTTAAGTGTGTACA+AGG - chr8_1:56802044-56802063 Msa1203050:three_prime_UTR 55.0%
!! CTTTCTAGAAGGCTCGGTGG+TGG + chr8_1:56802077-56802096 None:intergenic 55.0%
! CACCACCGAGCCTTCTAGAA+AGG - chr8_1:56802075-56802094 Msa1203050:three_prime_UTR 55.0%
TTCTGCAAACTCCGCAGCCT+CGG + chr8_1:56802161-56802180 None:intergenic 55.0%
! ACTAGCTTCACCTGCGCCAA+CGG + chr8_1:56802305-56802324 None:intergenic 55.0%
GGAGGAAGATGAGGAGGATC+CGG - chr8_1:56802508-56802527 Msa1203050:three_prime_UTR 55.0%
GAGGAAGATGAGGAGGATCC+GGG - chr8_1:56802509-56802528 Msa1203050:three_prime_UTR 55.0%
AGGAAGATGAGGAGGATCCG+GGG - chr8_1:56802510-56802529 Msa1203050:three_prime_UTR 55.0%
GGAGCGGTGAGATTGATGGA+GGG - chr8_1:56802531-56802550 Msa1203050:three_prime_UTR 55.0%
GAGCGGTGAGATTGATGGAG+GGG - chr8_1:56802532-56802551 Msa1203050:three_prime_UTR 55.0%
GGAGAGTGATGCTGATGAGG+AGG - chr8_1:56802631-56802650 Msa1203050:intron 55.0%
AGTTCGAGGGGGAGGGTTAA+TGG - chr8_1:56802662-56802681 Msa1203050:intron 55.0%
GTTCGAGGGGGAGGGTTAAT+GGG - chr8_1:56802663-56802682 Msa1203050:intron 55.0%
TTCGAGGGGGAGGGTTAATG+GGG - chr8_1:56802664-56802683 Msa1203050:intron 55.0%
GGGGTGAGTCATCAGGAGAA+TGG - chr8_1:56802683-56802702 Msa1203050:intron 55.0%
! TGAGCCGGTTGATGTTGAGG+AGG - chr8_1:56802715-56802734 Msa1203050:intron 55.0%
TGAGGAAGAGGGGGATGATG+AGG - chr8_1:56802772-56802791 Msa1203050:three_prime_UTR 55.0%
AGAGGGGGATGATGAGGATG+TGG - chr8_1:56802778-56802797 Msa1203050:three_prime_UTR 55.0%
GGATGATGAGGATGTGGTGG+AGG - chr8_1:56802784-56802803 Msa1203050:three_prime_UTR 55.0%
TGACGAGGACGATGATGAGG+TGG - chr8_1:56802868-56802887 Msa1203050:CDS 55.0%
!! GCTGAGCCTGAGAGTACTTC+TGG - chr8_1:56802911-56802930 Msa1203050:CDS 55.0%
!! AGCCTGAGAGTACTTCTGGG+CGG - chr8_1:56802915-56802934 Msa1203050:CDS 55.0%
!! AACCGCCCAGAAGTACTCTC+AGG + chr8_1:56802920-56802939 None:intergenic 55.0%
!! TGAGAGTACTTCTGGGCGGT+TGG - chr8_1:56802919-56802938 Msa1203050:CDS 55.0%
GAGATCGATGGGCATGAGCA+AGG - chr8_1:56802956-56802975 Msa1203050:CDS 55.0%
GATCGATGGGCATGAGCAAG+GGG - chr8_1:56802958-56802977 Msa1203050:CDS 55.0%
CATGAGCAAGGGGAGGAAGA+TGG - chr8_1:56802968-56802987 Msa1203050:CDS 55.0%
CAATGGAGAGACCGGTGAAG+AGG - chr8_1:56803003-56803022 Msa1203050:CDS 55.0%
AGAGACCGGTGAAGAGGAGA+TGG - chr8_1:56803009-56803028 Msa1203050:CDS 55.0%
AACCGCCATCTCCTCTTCAC+CGG + chr8_1:56803017-56803036 None:intergenic 55.0%
! CAGGAGGAAGACTTTGGTGC+TGG - chr8_1:56804531-56804550 Msa1203050:intron 55.0%
! TCTGGTTCAGCCAGTTGGAC+AGG - chr8_1:56804557-56804576 Msa1203050:CDS 55.0%
GGAGCTGCTGACATCGATGA+TGG - chr8_1:56804597-56804616 Msa1203050:CDS 55.0%
CTCTTGGGATGTGAAGAGGC+GGG + chr8_1:56804702-56804721 None:intergenic 55.0%
CCTCTTGGGATGTGAAGAGG+CGG + chr8_1:56804703-56804722 None:intergenic 55.0%
ACCGCTCATGTGCTCAATGC+AGG - chr8_1:56805075-56805094 Msa1203050:CDS 55.0%
GGCCCCATTGGTACATTACC+TGG + chr8_1:56805433-56805452 None:intergenic 55.0%
CACAATTAGAGGGGCCCCAT+TGG + chr8_1:56805445-56805464 None:intergenic 55.0%
TCTGCAAACTCCGCAGCCTC+GGG + chr8_1:56802160-56802179 None:intergenic 60.0%
TCTGATAACCGGATCGCCGG+AGG - chr8_1:56802191-56802210 Msa1203050:three_prime_UTR 60.0%
CTGATAACCGGATCGCCGGA+GGG - chr8_1:56802192-56802211 Msa1203050:three_prime_UTR 60.0%
! GAGGCCGGAGAGTGATGATG+AGG - chr8_1:56802439-56802458 Msa1203050:three_prime_UTR 60.0%
CCATCAATCTCACCGCTCCC+CGG + chr8_1:56802530-56802549 None:intergenic 60.0%
GGGAGCGGTGAGATTGATGG+AGG - chr8_1:56802530-56802549 Msa1203050:three_prime_UTR 60.0%
CGGTGAGATTGATGGAGGGG+AGG - chr8_1:56802535-56802554 Msa1203050:three_prime_UTR 60.0%
!! AGGAGGTGACGGAGAGTTCG+AGG - chr8_1:56802648-56802667 Msa1203050:intron 60.0%
!! GGAGGTGACGGAGAGTTCGA+GGG - chr8_1:56802649-56802668 Msa1203050:intron 60.0%
!! GAGGTGACGGAGAGTTCGAG+GGG - chr8_1:56802650-56802669 Msa1203050:intron 60.0%
!! AGGTGACGGAGAGTTCGAGG+GGG - chr8_1:56802651-56802670 Msa1203050:intron 60.0%
GGGGGATGATGAGGATGTGG+TGG - chr8_1:56802781-56802800 Msa1203050:three_prime_UTR 60.0%
!! GGGCGGTTGGTGAGTACTGA+AGG - chr8_1:56802932-56802951 Msa1203050:CDS 60.0%
GACCGGTGAAGAGGAGATGG+CGG - chr8_1:56803012-56803031 Msa1203050:CDS 60.0%
TTGGGATGTGAAGAGGCGGG+AGG + chr8_1:56804699-56804718 None:intergenic 60.0%
CCGCCTCTTCACATCCCAAG+AGG - chr8_1:56804700-56804719 Msa1203050:CDS 60.0%
AGTTTGCGTGACGCACACGC+AGG - chr8_1:56805746-56805765 Msa1203050:five_prime_UTR 60.0%
CGTCGTTGGAGCAGTTCCCG+AGG - chr8_1:56802141-56802160 Msa1203050:three_prime_UTR 65.0%
TGGAGCAGTTCCCGAGGCTG+CGG - chr8_1:56802147-56802166 Msa1203050:three_prime_UTR 65.0%
TAACCGGATCGCCGGAGGGT+TGG - chr8_1:56802196-56802215 Msa1203050:three_prime_UTR 65.0%
ACTCCAACCCTCCGGCGATC+CGG + chr8_1:56802202-56802221 None:intergenic 65.0%
AGATCTTGCGCCGTTGGCGC+AGG - chr8_1:56802292-56802311 Msa1203050:three_prime_UTR 65.0%
GATGAGGAGGATCCGGGGAG+CGG - chr8_1:56802515-56802534 Msa1203050:three_prime_UTR 65.0%
CCGGGGAGCGGTGAGATTGA+TGG - chr8_1:56802527-56802546 Msa1203050:three_prime_UTR 65.0%
TGACGGAGAGTTCGAGGGGG+AGG - chr8_1:56802654-56802673 Msa1203050:intron 65.0%
GACGGAGAGTTCGAGGGGGA+GGG - chr8_1:56802655-56802674 Msa1203050:intron 65.0%
CGATGGGCATGAGCAAGGGG+AGG - chr8_1:56802961-56802980 Msa1203050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56801645 56806014 56801645 ID=Msa1203050;Name=Msa1203050
chr8_1 mRNA 56801645 56806014 56801645 ID=Msa1203050-mRNA-1;Parent=Msa1203050;Name=Msa1203050-mRNA-1;_AED=0.17;_eAED=0.17;_QI=291|0.66|0.75|1|0.66|0.5|4|1013|503
chr8_1 exon 56801645 56802562 56801645 ID=Msa1203050-mRNA-1:exon:18568;Parent=Msa1203050-mRNA-1
chr8_1 exon 56802761 56803125 56802761 ID=Msa1203050-mRNA-1:exon:18567;Parent=Msa1203050-mRNA-1
chr8_1 exon 56804367 56804438 56804367 ID=Msa1203050-mRNA-1:exon:18566;Parent=Msa1203050-mRNA-1
chr8_1 exon 56804554 56806014 56804554 ID=Msa1203050-mRNA-1:exon:18565;Parent=Msa1203050-mRNA-1
chr8_1 five_prime_UTR 56805724 56806014 56805724 ID=Msa1203050-mRNA-1:five_prime_utr;Parent=Msa1203050-mRNA-1
chr8_1 CDS 56804554 56805723 56804554 ID=Msa1203050-mRNA-1:cds;Parent=Msa1203050-mRNA-1
chr8_1 CDS 56804367 56804438 56804367 ID=Msa1203050-mRNA-1:cds;Parent=Msa1203050-mRNA-1
chr8_1 CDS 56802856 56803125 56802856 ID=Msa1203050-mRNA-1:cds;Parent=Msa1203050-mRNA-1
chr8_1 three_prime_UTR 56802761 56802855 56802761 ID=Msa1203050-mRNA-1:three_prime_utr;Parent=Msa1203050-mRNA-1
chr8_1 three_prime_UTR 56801645 56802562 56801645 ID=Msa1203050-mRNA-1:three_prime_utr;Parent=Msa1203050-mRNA-1
Gene Sequence

>Msa1203050

ATGAGATATACGATTTGGTATTTAATGGATGAGATCTGGGAGAAAGCTGTGGAAACGGCGTTAGAAGGAGAGAAAGATCATGTTTCAGCACGAACGTTAACACTTGACGGCGCCGTTAAGTGTGTACAAGGACGTTTACCACCACCGAGCCTTCTAGAAAGGTTCCAGAATCTTCAGCATCTTTCGATTGCGAACGTTGGTGTTTCGTCGTTGGAGCAGTTCCCGAGGCTGCGGAGTTTGCAGAAGTTGAATTTGTCTGATAACCGGATCGCCGGAGGGTTGGAGTATTTAGTCGAAGCGGGTCTCGATTCGCTTCGAGATCTTGATTTATCGAATAATAGGATTCAGAATTTTGAAGATCTTGCGCCGTTGGCGCAGGTGAAGCTAGTTTCGTTGGATCTGTATGAGTGTCCTGTTACTAGGGTTAAGGATTATCGATCTAGGGTTTTTGGTTTGATCAAGTCGTTGAAGTATTTGGATAAGATGGATGCTGAGGAAAATGAGAGGCCGGAGAGTGATGATGAGGAAGAGGATGATAATGAGGATAATGAGGAGGATGATGAAAATGATGAGGAGGAAGATGAGGAGGATCCGGGGAGCGGTGAGATTGATGGAGGGGAGGAAGATCGAGTTTTTGGGGTGGAGAATGGGCATAGTGAAGGTGTTGATGGAGTTGTTGATGCTGATGAGGATGAGGAGAGTGATGCTGATGAGGAGGTGACGGAGAGTTCGAGGGGGAGGGTTAATGGGGTGAGTCATCAGGAGAATGGGTTTCATGTTGAGCCGGTTGATGTTGAGGAGGATGACGATGATGAGGATTCTGGAGAGGAGATTGATGAGGAAGAGGGGGATGATGAGGATGTGGTGGAGGTGAATGAGATTGATGATAGTGATGATGATGAAGATGGGGTTGAGTTTGACGAGGATGATGATGACGAGGACGATGATGAGGTGGATAATGATGAAGGGGATTTTGCTGAGCCTGAGAGTACTTCTGGGCGGTTGGTGAGTACTGAAGGTGAGATCGATGGGCATGAGCAAGGGGAGGAAGATGGAGATGAAGATGACAATGGAGAGACCGGTGAAGAGGAGATGGCGGTTGAAGAAGAAGATGAAGACGACGATGATGATGGAGATGATGACGATGGAGAGTTTGAAGACGACGATGAAATTGCTGAAGAGAAGGCGATGATTTTTGGTTCTCTTGATATGATGATGTTTGCTAACTTGATTAGAACTTTTGAGGAAGACTTTGGTGCTGGATATCTGGTTCAGCCAGTTGGACAGGATGATGCTCTCAATGATGGAGCTGCTGACATCGATGATGGAGAAAACGAAGATGGTGAAGAAGAAGAGGAAGTTGATGATGATGATGTTGATGACGATGATGCTCAAGAGGTGTTGCCTCCCGCCTCTTCACATCCCAAGAGGAAGAGGGACAATGATGATGAAGCTGATGAGGACGATGAAGATGAAGCAGCATTCACAAAGCCATCCAAGAAGCACCATTGA
Protein sequence

>Msa1203050

MRYTIWYLMDEIWEKAVETALEGEKDHVSARTLTLDGAVKCVQGRLPPPSLLERFQNLQHLSIANVGVSSLEQFPRLRSLQKLNLSDNRIAGGLEYLVEAGLDSLRDLDLSNNRIQNFEDLAPLAQVKLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDAEENERPESDDEEEDDNEDNEEDDENDEEEDEEDPGSGEIDGGEEDRVFGVENGHSEGVDGVVDADEDEESDADEEVTESSRGRVNGVSHQENGFHVEPVDVEEDDDDEDSGEEIDEEEGDDEDVVEVNEIDDSDDDEDGVEFDEDDDDEDDDEVDNDEGDFAEPESTSGRLVSTEGEIDGHEQGEEDGDEDDNGETGEEEMAVEEEDEDDDDDGDDDDGEFEDDDEIAEEKAMIFGSLDMMMFANLIRTFEEDFGAGYLVQPVGQDDALNDGAADIDDGENEDGEEEEEVDDDDVDDDDAQEVLPPASSHPKRKRDNDDEADEDDEDEAAFTKPSKKHH*