Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141680 | QDC27833.1 | 100.000 | 192 | 0 | 0 | 4 | 195 | 318 | 509 | 1.81e-136 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141680 | sp|Q9FUJ1|CKX7_ARATH | 63.874 | 191 | 68 | 1 | 3 | 192 | 333 | 523 | 4.57e-87 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141680 | A0A4Y5UJA3 | 100.000 | 192 | 0 | 0 | 4 | 195 | 318 | 509 | 8.66e-137 | 401 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059880 | Msa0141680 | -0.809125 | 2.208416e-50 | -8.615850e-47 |
| Msa0094840 | Msa0141680 | 0.809541 | 1.798063e-50 | -8.615850e-47 |
| Msa0106110 | Msa0141680 | -0.802073 | 6.670989e-49 | -8.615850e-47 |
| Msa0134550 | Msa0141680 | 0.801148 | 1.032439e-48 | -8.615850e-47 |
| Msa0141680 | Msa0148000 | 0.842620 | 2.314383e-58 | -8.615850e-47 |
| Msa0141680 | Msa0242700 | -0.816831 | 4.514938e-52 | -8.615850e-47 |
| Msa0141680 | Msa0309160 | 0.805744 | 1.151691e-49 | -8.615850e-47 |
| Msa0141680 | Msa0365360 | 0.833355 | 5.592745e-56 | -8.615850e-47 |
| Msa0141680 | Msa0413040 | 0.802557 | 5.302682e-49 | -8.615850e-47 |
| Msa0141680 | Msa0457370 | 0.843331 | 1.496284e-58 | -8.615850e-47 |
| Msa0141680 | Msa0504630 | 0.807927 | 3.978534e-50 | -8.615850e-47 |
| Msa0141680 | Msa0513170 | 0.815005 | 1.153739e-51 | -8.615850e-47 |
| Msa0141680 | Msa0535050 | 0.802818 | 4.682731e-49 | -8.615850e-47 |
| Msa0141680 | Msa0610850 | 0.813855 | 2.072240e-51 | -8.615850e-47 |
| Msa0141680 | Msa0739410 | 0.838904 | 2.180070e-57 | -8.615850e-47 |
| Msa0141680 | Msa0910830 | -0.806151 | 9.455403e-50 | -8.615850e-47 |
| Msa0141680 | Msa1055710 | 0.811321 | 7.421689e-51 | -8.615850e-47 |
| Msa0141680 | Msa1081600 | 0.814113 | 1.817571e-51 | -8.615850e-47 |
| Msa0141680 | Msa1109890 | -0.816990 | 4.158789e-52 | -8.615850e-47 |
| Msa0141680 | Msa1166370 | 0.819687 | 1.018764e-52 | -8.615850e-47 |
| Msa0141680 | Msa1220710 | 0.802164 | 6.389376e-49 | -8.615850e-47 |
| Msa0141680 | Msa1298910 | 0.809057 | 2.284149e-50 | -8.615850e-47 |
| Msa0141680 | Msa1307770 | 0.820838 | 5.550871e-53 | -8.615850e-47 |
| Msa0141680 | Msa1330530 | 0.812004 | 5.272504e-51 | -8.615850e-47 |
| Msa0141680 | Msa1348500 | 0.815461 | 9.138176e-52 | -8.615850e-47 |
| Msa0141680 | Msa1390410 | 0.807261 | 5.510357e-50 | -8.615850e-47 |
| Msa0141680 | Msa1457070 | 0.813871 | 2.055228e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141680 | MtrunA17_Chr1g0150941 | 97.917 | 192 | 4 | 0 | 4 | 195 | 318 | 509 | 7.10e-139 | 397 |
| Msa0141680 | MtrunA17_Chr3g0141981 | 47.059 | 187 | 96 | 1 | 3 | 189 | 339 | 522 | 1.08e-56 | 187 |
| Msa0141680 | MtrunA17_Chr4g0020621 | 43.979 | 191 | 106 | 1 | 3 | 192 | 334 | 524 | 1.50e-55 | 184 |
| Msa0141680 | MtrunA17_Chr3g0091141 | 44.737 | 190 | 102 | 1 | 3 | 192 | 357 | 543 | 2.35e-55 | 183 |
| Msa0141680 | MtrunA17_Chr2g0299361 | 45.026 | 191 | 100 | 3 | 1 | 189 | 123 | 310 | 9.47e-53 | 171 |
| Msa0141680 | MtrunA17_Chr2g0299371 | 44.898 | 196 | 97 | 5 | 3 | 192 | 350 | 540 | 3.08e-52 | 175 |
| Msa0141680 | MtrunA17_Chr7g0257061 | 40.104 | 192 | 114 | 1 | 1 | 191 | 347 | 538 | 2.99e-51 | 172 |
| Msa0141680 | MtrunA17_Chr4g0071111 | 41.146 | 192 | 105 | 3 | 3 | 191 | 341 | 527 | 2.37e-50 | 170 |
| Msa0141680 | MtrunA17_Chr4g0071121 | 40.933 | 193 | 102 | 3 | 3 | 190 | 333 | 518 | 1.09e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141680 | AT5G21482.1 | 63.874 | 191 | 68 | 1 | 3 | 192 | 333 | 523 | 4.64e-88 | 268 |
| Msa0141680 | AT1G75450.1 | 46.316 | 190 | 97 | 2 | 3 | 189 | 333 | 520 | 2.10e-54 | 181 |
| Msa0141680 | AT1G75450.2 | 46.316 | 190 | 97 | 2 | 3 | 189 | 330 | 517 | 2.59e-54 | 181 |
| Msa0141680 | AT2G41510.1 | 41.837 | 196 | 113 | 1 | 1 | 195 | 350 | 545 | 4.21e-53 | 178 |
| Msa0141680 | AT2G41510.2 | 41.837 | 196 | 113 | 1 | 1 | 195 | 412 | 607 | 4.37e-53 | 179 |
| Msa0141680 | AT3G63440.1 | 42.105 | 190 | 109 | 1 | 3 | 191 | 339 | 528 | 4.52e-52 | 175 |
| Msa0141680 | AT5G56970.1 | 42.932 | 191 | 103 | 2 | 3 | 191 | 333 | 519 | 8.21e-50 | 169 |
| Msa0141680 | AT4G29740.2 | 40.957 | 188 | 106 | 2 | 5 | 190 | 340 | 524 | 9.65e-44 | 152 |
| Msa0141680 | AT2G19500.1 | 42.932 | 191 | 101 | 4 | 3 | 189 | 315 | 501 | 1.76e-43 | 151 |
| Msa0141680 | AT5G56970.2 | 49.451 | 91 | 44 | 1 | 3 | 91 | 333 | 423 | 3.00e-21 | 90.5 |
| Msa0141680 | AT2G41510.3 | 41.758 | 91 | 53 | 0 | 1 | 91 | 350 | 440 | 2.80e-19 | 85.1 |
| Msa0141680 | AT4G29740.1 | 40.449 | 89 | 51 | 1 | 5 | 91 | 340 | 428 | 2.19e-13 | 68.2 |
Find 68 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTATTTAAGTTGGTTTC+TGG | 0.147486 | 1_4:+296804 | None:intergenic |
| TGCGACACTTTGGGGATAAA+TGG | 0.271384 | 1_4:-296897 | Msa0141680:CDS |
| ATGCTAAAGCCAAAGGTATA+TGG | 0.292797 | 1_4:-299786 | Msa0141680:CDS |
| GGGACCACCTACTGATAAAT+TGG | 0.310615 | 1_4:-297013 | Msa0141680:CDS |
| TTTGAATTCCTTTATGGTTA+AGG | 0.321249 | 1_4:-300129 | None:intergenic |
| TGATGAACCATTGTAGTAAT+TGG | 0.325750 | 1_4:+296671 | None:intergenic |
| AGAATTGGATGCGACACTTT+GGG | 0.334189 | 1_4:-296906 | Msa0141680:CDS |
| CTAATTAATATTATTTAAGT+TGG | 0.346858 | 1_4:+296797 | None:intergenic |
| AACCATTGTAGTAATTGGTT+GGG | 0.364988 | 1_4:+296676 | None:intergenic |
| CCATTGGCTATTCTTGCACC+TGG | 0.390881 | 1_4:-296841 | Msa0141680:CDS |
| AAAATCAGCAATGTCGGTCT+TGG | 0.394703 | 1_4:+299729 | None:intergenic |
| ACTACACGTCTCAGGAGAAT+TGG | 0.396585 | 1_4:-296921 | Msa0141680:CDS |
| AAGTGGATAGATTGCTTGGA+GGG | 0.409011 | 1_4:-299891 | Msa0141680:CDS |
| ACTTACTTGCTTCGCAATAG+TGG | 0.415161 | 1_4:+299646 | None:intergenic |
| GAGAATTGGATGCGACACTT+TGG | 0.419306 | 1_4:-296907 | Msa0141680:CDS |
| AGGTGCATCCCATATACCTT+TGG | 0.435349 | 1_4:+299777 | None:intergenic |
| TAGAAAGTGGATAGATTGCT+TGG | 0.458245 | 1_4:-299895 | Msa0141680:CDS |
| TGCTAAAGCCAAAGGTATAT+GGG | 0.464646 | 1_4:-299785 | Msa0141680:CDS |
| ATTTATTCCACCACCACCTA+AGG | 0.468688 | 1_4:-297034 | Msa0141680:CDS |
| CAATAGTGGGTACACTAGAA+TGG | 0.480738 | 1_4:+299660 | None:intergenic |
| ATCCTCAAACATGGGGTTGG+TGG | 0.488134 | 1_4:-299685 | Msa0141680:CDS |
| TTATCAGTAGGTGGTCCCTT+AGG | 0.488494 | 1_4:+297018 | None:intergenic |
| GACCACCAACCCCATGTTTG+AGG | 0.489413 | 1_4:+299683 | None:intergenic |
| GGAGGGTTGAGATTTGTTGA+GGG | 0.491332 | 1_4:-299874 | Msa0141680:CDS |
| TGTTGAGGGAATAAAATTTG+AGG | 0.496430 | 1_4:-299860 | Msa0141680:CDS |
| AATAGTGGGTACACTAGAAT+GGG | 0.499246 | 1_4:+299661 | None:intergenic |
| GGTGGTCCCTTAGGTGGTGG+TGG | 0.502048 | 1_4:+297027 | None:intergenic |
| TCTTCCTCACTACACGTCTC+AGG | 0.507862 | 1_4:-296929 | Msa0141680:CDS |
| ACCATTGTAGTAATTGGTTG+GGG | 0.523199 | 1_4:+296677 | None:intergenic |
| TCAAGAAAATCCTCAAACAT+GGG | 0.525014 | 1_4:-299693 | Msa0141680:CDS |
| GAAACAACAACAAGATCGAT+GGG | 0.526881 | 1_4:+296703 | None:intergenic |
| TATTCAATTGTGCTACAACA+AGG | 0.537041 | 1_4:-296971 | Msa0141680:CDS |
| GTAGGTGGTCCCTTAGGTGG+TGG | 0.540886 | 1_4:+297024 | None:intergenic |
| TGTGCCACCAATTTATCAGT+AGG | 0.542453 | 1_4:+297006 | None:intergenic |
| ACGTGTAAAGCGTGTGGAAG+AGG | 0.543242 | 1_4:-299809 | Msa0141680:CDS |
| GAACCATTGTAGTAATTGGT+TGG | 0.544245 | 1_4:+296675 | None:intergenic |
| TCAGTAGGTGGTCCCTTAGG+TGG | 0.547015 | 1_4:+297021 | None:intergenic |
| CTTACTTGCTTCGCAATAGT+GGG | 0.549432 | 1_4:+299647 | None:intergenic |
| ATGTAGAAAATGTTGCTGTC+TGG | 0.552926 | 1_4:+297072 | None:intergenic |
| TGGAGGGTTGAGATTTGTTG+AGG | 0.555521 | 1_4:-299875 | Msa0141680:CDS |
| ATTCAATTGTGCTACAACAA+GGG | 0.556005 | 1_4:-296970 | Msa0141680:CDS |
| TCCCCAACCAATTACTACAA+TGG | 0.556720 | 1_4:-296678 | Msa0141680:three_prime_UTR |
| TAGGTGGTGGTGGAATAAAT+CGG | 0.560506 | 1_4:+297037 | None:intergenic |
| AAAGTGGATAGATTGCTTGG+AGG | 0.565909 | 1_4:-299892 | Msa0141680:CDS |
| GGATGATAGACACTCGGTAG+TGG | 0.567626 | 1_4:-297097 | Msa0141680:CDS |
| AGAAACAACAACAAGATCGA+TGG | 0.569428 | 1_4:+296702 | None:intergenic |
| AAAATCCTCAAACATGGGGT+TGG | 0.574467 | 1_4:-299688 | Msa0141680:CDS |
| TTCAAGAAAATCCTCAAACA+TGG | 0.574533 | 1_4:-299694 | Msa0141680:CDS |
| ACGATCAAAATCAGCAATGT+CGG | 0.577104 | 1_4:+299723 | None:intergenic |
| GACACAAACATGTTCAACCA+TGG | 0.577551 | 1_4:+299751 | None:intergenic |
| TTTATATATAGGATACGCAA+AGG | 0.580837 | 1_4:+296597 | None:intergenic |
| TTTATTCCACCACCACCTAA+GGG | 0.590375 | 1_4:-297033 | Msa0141680:CDS |
| AACATGTTCAACCATGGGTG+AGG | 0.595226 | 1_4:+299757 | None:intergenic |
| TGAGGATGATGTGAAGTACA+TGG | 0.595819 | 1_4:-299842 | Msa0141680:CDS |
| TATGGGATGCACCTCACCCA+TGG | 0.601998 | 1_4:-299768 | Msa0141680:CDS |
| GAATTGGATGCGACACTTTG+GGG | 0.604652 | 1_4:-296905 | Msa0141680:CDS |
| AATATGAAAACAAAATTACA+AGG | 0.605619 | 1_4:+296733 | None:intergenic |
| ACCACCTACTGATAAATTGG+TGG | 0.607929 | 1_4:-297010 | Msa0141680:CDS |
| GCCACCAATTTATCAGTAGG+TGG | 0.612550 | 1_4:+297009 | None:intergenic |
| ACACAAACATGTTCAACCAT+GGG | 0.614296 | 1_4:+299752 | None:intergenic |
| CAGGTGGGATGATAGACACT+CGG | 0.631537 | 1_4:-297103 | Msa0141680:CDS |
| GAAGAGGATGCTAAAGCCAA+AGG | 0.631830 | 1_4:-299793 | Msa0141680:CDS |
| TTTGCTACGTGTAAAGCGTG+TGG | 0.637512 | 1_4:-299815 | Msa0141680:CDS |
| CAAGAAAATCCTCAAACATG+GGG | 0.637785 | 1_4:-299692 | Msa0141680:CDS |
| CATTGGCTATTCTTGCACCT+GGG | 0.639117 | 1_4:-296840 | Msa0141680:CDS |
| TTCTCCTGAGACGTGTAGTG+AGG | 0.643513 | 1_4:+296925 | None:intergenic |
| CCAGGTGCAAGAATAGCCAA+TGG | 0.680263 | 1_4:+296841 | None:intergenic |
| AAACAACAACAAGATCGATG+GGG | 0.732189 | 1_4:+296704 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTATATTAAA+AGG | - | chr1_4:298381-298400 | Msa0141680:intron | 0.0% |
| !!! | TTTTTAATACTTGAAAATTT+AGG | - | chr1_4:297162-297181 | Msa0141680:intron | 10.0% |
| !! | CAATTTAACTAAAAAAAATA+GGG | + | chr1_4:297809-297828 | None:intergenic | 10.0% |
| !!! | AAAAAAGATTTTAAAACATT+TGG | + | chr1_4:298533-298552 | None:intergenic | 10.0% |
| !!! | AAAATCTTTTTTTTTTTTAG+GGG | - | chr1_4:298541-298560 | Msa0141680:intron | 10.0% |
| !! | AATTGATTGATTAATAATTA+AGG | - | chr1_4:299565-299584 | Msa0141680:intron | 10.0% |
| !! | CTAATTAATATTATTTAAGT+TGG | + | chr1_4:299917-299936 | None:intergenic | 10.0% |
| !!! | AAAAATATTGATTTACAATA+TGG | + | chr1_4:300067-300086 | None:intergenic | 10.0% |
| !!! | TATTGTAAATCAATATTTTT+AGG | - | chr1_4:300067-300086 | Msa0141680:intron | 10.0% |
| !! | TATTAAAAATTATGAGACAA+TGG | + | chr1_4:297151-297170 | None:intergenic | 15.0% |
| !! | ATAGAAAATACTATACATAT+AGG | + | chr1_4:297769-297788 | None:intergenic | 15.0% |
| !! | ATAGGGAAAAATTTAAAAAT+TGG | + | chr1_4:297792-297811 | None:intergenic | 15.0% |
| !! | GCAATTTAACTAAAAAAAAT+AGG | + | chr1_4:297810-297829 | None:intergenic | 15.0% |
| !!! | TGAAAATCTTACTTTTTTTA+GGG | + | chr1_4:298064-298083 | None:intergenic | 15.0% |
| !! | AACTTTGAATTATCTTTAAT+TGG | + | chr1_4:299342-299361 | None:intergenic | 15.0% |
| !! | AATATGAAAACAAAATTACA+AGG | + | chr1_4:299981-300000 | None:intergenic | 15.0% |
| !!! | ATATATTTTTTTACCGTGAA+AGG | - | chr1_4:297232-297251 | Msa0141680:intron | 20.0% |
| !!! | TATATTTTTTTACCGTGAAA+GGG | - | chr1_4:297233-297252 | Msa0141680:intron | 20.0% |
| !!! | AATTTTATAAATGCGTTAGT+TGG | - | chr1_4:297277-297296 | Msa0141680:intron | 20.0% |
| !!! | ATTTTATAAATGCGTTAGTT+GGG | - | chr1_4:297278-297297 | Msa0141680:intron | 20.0% |
| !!! | TTAGTTAAATTGCTTCTTTT+TGG | - | chr1_4:297817-297836 | Msa0141680:intron | 20.0% |
| !! | AATTCATAAAATATGCAATG+CGG | + | chr1_4:297862-297881 | None:intergenic | 20.0% |
| !!! | ATTTTTTGGTAACACTTTTT+AGG | + | chr1_4:298039-298058 | None:intergenic | 20.0% |
| !!! | CTTTTTTTAGGGTAATTTTT+TGG | + | chr1_4:298053-298072 | None:intergenic | 20.0% |
| !!! | GTGAAAATCTTACTTTTTTT+AGG | + | chr1_4:298065-298084 | None:intergenic | 20.0% |
| !! | AGATAGATAAAGTTGAAAAA+GGG | + | chr1_4:298410-298429 | None:intergenic | 20.0% |
| !! | AAGATAGATAAAGTTGAAAA+AGG | + | chr1_4:298411-298430 | None:intergenic | 20.0% |
| !!! | TTTTGTATTTTCTCTTGAAA+TGG | - | chr1_4:298823-298842 | Msa0141680:intron | 20.0% |
| !!! | TTTGTATTTTCTCTTGAAAT+GGG | - | chr1_4:298824-298843 | Msa0141680:intron | 20.0% |
| !!! | ACTTACTTTTCATCATTTTA+AGG | + | chr1_4:299419-299438 | None:intergenic | 20.0% |
| !!! | TGTTGTTTTTATGATTAATC+AGG | - | chr1_4:299589-299608 | Msa0141680:intron | 20.0% |
| !!! | AAAACAAAATTTTGATCCAT+TGG | - | chr1_4:299854-299873 | Msa0141680:CDS | 20.0% |
| !!! | ATATTATTTAAGTTGGTTTC+TGG | + | chr1_4:299910-299929 | None:intergenic | 20.0% |
| ! | TATCACTATGTTACATAGAA+AGG | - | chr1_4:297113-297132 | Msa0141680:intron | 25.0% |
| !! | ATTTTATCATGATTATGACG+AGG | - | chr1_4:297345-297364 | Msa0141680:intron | 25.0% |
| ! | AAAGGTTAATAAGCCAAAAT+GGG | - | chr1_4:297632-297651 | Msa0141680:intron | 25.0% |
| ! | AATTCAAGATGAGATAAAGA+AGG | + | chr1_4:297732-297751 | None:intergenic | 25.0% |
| ! | TTCTTTATCTCATCTTGAAT+TGG | - | chr1_4:297731-297750 | Msa0141680:intron | 25.0% |
| ! | ATTCATAAAATATGCAATGC+GGG | + | chr1_4:297861-297880 | None:intergenic | 25.0% |
| !! | CTAAAATGAGTAGTTTGTAA+TGG | - | chr1_4:297927-297946 | Msa0141680:intron | 25.0% |
| ! | TGAGAAAAAACAGATAGAAA+AGG | + | chr1_4:298124-298143 | None:intergenic | 25.0% |
| !!! | TGCAATTAGCTTTGATTTTA+TGG | + | chr1_4:298292-298311 | None:intergenic | 25.0% |
| ! | TAGTTGATTACTATCAAATG+TGG | - | chr1_4:298337-298356 | Msa0141680:intron | 25.0% |
| ! | GATAGATAAAGTTGAAAAAG+GGG | + | chr1_4:298409-298428 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTTTTTTAGGGGA+AGG | - | chr1_4:298545-298564 | Msa0141680:intron | 25.0% |
| !!! | TCTAGTAATCAGGTTTTTTT+CGG | - | chr1_4:298571-298590 | Msa0141680:intron | 25.0% |
| !!! | TTTTTCTAAGGATTGGAATT+TGG | - | chr1_4:298916-298935 | Msa0141680:intron | 25.0% |
| ! | AATGTTCTAATAATGTTGGT+GGG | + | chr1_4:299043-299062 | None:intergenic | 25.0% |
| ! | ATGCAATGTTCTAATAATGT+TGG | + | chr1_4:299047-299066 | None:intergenic | 25.0% |
| ! | ACACTAAAGGAATATTATGT+AGG | + | chr1_4:299093-299112 | None:intergenic | 25.0% |
| !! | TTTTAATCAACAGTTAGTCA+AGG | - | chr1_4:299255-299274 | Msa0141680:intron | 25.0% |
| ! | TTTAATCAACAGTTAGTCAA+GGG | - | chr1_4:299256-299275 | Msa0141680:intron | 25.0% |
| !!! | AGTATGACTTATTTTACTCT+AGG | - | chr1_4:299441-299460 | Msa0141680:intron | 25.0% |
| !! | TTCTAGAGAGAAAATAAAAC+AGG | + | chr1_4:299478-299497 | None:intergenic | 25.0% |
| ! | AGAATTGCAATCACAATTTA+GGG | + | chr1_4:299545-299564 | None:intergenic | 25.0% |
| ! | TAGAATTGCAATCACAATTT+AGG | + | chr1_4:299546-299565 | None:intergenic | 25.0% |
| !!! | TGTTTTTATGATTAATCAGG+TGG | - | chr1_4:299592-299611 | Msa0141680:intron | 25.0% |
| !! | GTTTTTATGATTAATCAGGT+GGG | - | chr1_4:299593-299612 | Msa0141680:intron | 25.0% |
| !!! | GATCAAAATTTTGTTTTCTC+TGG | + | chr1_4:299851-299870 | None:intergenic | 25.0% |
| ! | TTTATATATAGGATACGCAA+AGG | + | chr1_4:300117-300136 | None:intergenic | 25.0% |
| ATCTCAATAATCAGAGCAAA+TGG | + | chr1_4:296639-296658 | None:intergenic | 30.0% | |
| !!! | TCCAGAAAATGATGGTTTTT+TGG | + | chr1_4:296699-296718 | None:intergenic | 30.0% |
| CCACTTTCTACAATATATCA+AGG | + | chr1_4:296806-296825 | None:intergenic | 30.0% | |
| CCTTGATATATTGTAGAAAG+TGG | - | chr1_4:296803-296822 | Msa0141680:exon | 30.0% | |
| TGTTGAGGGAATAAAATTTG+AGG | - | chr1_4:296851-296870 | Msa0141680:CDS | 30.0% | |
| TTCAAGAAAATCCTCAAACA+TGG | - | chr1_4:297017-297036 | Msa0141680:CDS | 30.0% | |
| TCAAGAAAATCCTCAAACAT+GGG | - | chr1_4:297018-297037 | Msa0141680:CDS | 30.0% | |
| ATTCATATACTTTGCAACCA+AGG | + | chr1_4:297489-297508 | None:intergenic | 30.0% | |
| GAAAGGTTAATAAGCCAAAA+TGG | - | chr1_4:297631-297650 | Msa0141680:intron | 30.0% | |
| CATCTTGAATTGGTACTTTA+TGG | - | chr1_4:297741-297760 | Msa0141680:intron | 30.0% | |
| ! | AAGGAGTGATAGTGAATAAT+AGG | + | chr1_4:298213-298232 | None:intergenic | 30.0% |
| CAACGTCAATTTGAAAATTC+TGG | - | chr1_4:298445-298464 | Msa0141680:intron | 30.0% | |
| ATATCCTTGTCCATTCTTAT+TGG | + | chr1_4:298771-298790 | None:intergenic | 30.0% | |
| TCAAGAGAAAATACAAAACC+TGG | + | chr1_4:298821-298840 | None:intergenic | 30.0% | |
| !!! | TATTGATGCTGCTTTTTCTA+AGG | - | chr1_4:298904-298923 | Msa0141680:intron | 30.0% |
| ATGTTCTAATAATGTTGGTG+GGG | + | chr1_4:299042-299061 | None:intergenic | 30.0% | |
| CAATGTTCTAATAATGTTGG+TGG | + | chr1_4:299044-299063 | None:intergenic | 30.0% | |
| GAATATTATGTAGGAGGTTA+TGG | + | chr1_4:299084-299103 | None:intergenic | 30.0% | |
| CTAAAGGAATATTATGTAGG+AGG | + | chr1_4:299090-299109 | None:intergenic | 30.0% | |
| AAACCAATAATACTAGTAGC+AGG | - | chr1_4:299121-299140 | Msa0141680:intron | 30.0% | |
| !! | TTGAAGGAGTATTATGTAGA+AGG | + | chr1_4:299159-299178 | None:intergenic | 30.0% |
| TTAATCAACAGTTAGTCAAG+GGG | - | chr1_4:299257-299276 | Msa0141680:intron | 30.0% | |
| TCAAGGGGTTAAATTATCTT+TGG | - | chr1_4:299272-299291 | Msa0141680:intron | 30.0% | |
| !!! | ATGACTTATTTTACTCTAGG+TGG | - | chr1_4:299444-299463 | Msa0141680:intron | 30.0% |
| GAGAAAATAAAACAGGATCT+TGG | + | chr1_4:299471-299490 | None:intergenic | 30.0% | |
| TATTCAATTGTGCTACAACA+AGG | - | chr1_4:299740-299759 | Msa0141680:CDS | 30.0% | |
| ATTCAATTGTGCTACAACAA+GGG | - | chr1_4:299741-299760 | Msa0141680:CDS | 30.0% | |
| AACCATTGTAGTAATTGGTT+GGG | + | chr1_4:300038-300057 | None:intergenic | 30.0% | |
| TGATGAACCATTGTAGTAAT+TGG | + | chr1_4:300043-300062 | None:intergenic | 30.0% | |
| !!! | GATGGTTTTTTGGCCATTTA+CGG | + | chr1_4:296689-296708 | None:intergenic | 35.0% |
| ! | GCCAAAAAACCATCATTTTC+TGG | - | chr1_4:296695-296714 | Msa0141680:three_prime_UTR | 35.0% |
| CTACAGATTCCAGAAAATGA+TGG | + | chr1_4:296707-296726 | None:intergenic | 35.0% | |
| TAGAAAGTGGATAGATTGCT+TGG | - | chr1_4:296816-296835 | Msa0141680:CDS | 35.0% | |
| ! | ATGCTAAAGCCAAAGGTATA+TGG | - | chr1_4:296925-296944 | Msa0141680:CDS | 35.0% |
| ! | TGCTAAAGCCAAAGGTATAT+GGG | - | chr1_4:296926-296945 | Msa0141680:CDS | 35.0% |
| ACACAAACATGTTCAACCAT+GGG | + | chr1_4:296962-296981 | None:intergenic | 35.0% | |
| ACGATCAAAATCAGCAATGT+CGG | + | chr1_4:296991-297010 | None:intergenic | 35.0% | |
| CAAGAAAATCCTCAAACATG+GGG | - | chr1_4:297019-297038 | Msa0141680:CDS | 35.0% | |
| !! | AATAGTGGGTACACTAGAAT+GGG | + | chr1_4:297053-297072 | None:intergenic | 35.0% |
| !!! | TTTTTTTACCGTGAAAGGGA+AGG | - | chr1_4:297237-297256 | Msa0141680:intron | 35.0% |
| TATAAATGCGTTAGTTGGGT+TGG | - | chr1_4:297282-297301 | Msa0141680:intron | 35.0% | |
| !! | GATTTTGACATGAACTGCTA+AGG | - | chr1_4:297311-297330 | Msa0141680:intron | 35.0% |
| TAAAAACTAGCTACCACTAG+TGG | - | chr1_4:297377-297396 | Msa0141680:intron | 35.0% | |
| TGTTCATATGTTACCACTAG+TGG | + | chr1_4:297393-297412 | None:intergenic | 35.0% | |
| CACATAAAGCAAGAGAGATA+TGG | - | chr1_4:297430-297449 | Msa0141680:intron | 35.0% | |
| !! | TTTCACCCTAATTTGCTTCA+AGG | - | chr1_4:297528-297547 | Msa0141680:intron | 35.0% |
| ! | CAAGGACCACCAATTTTAAA+CGG | - | chr1_4:297546-297565 | Msa0141680:intron | 35.0% |
| ! | AAGGACCACCAATTTTAAAC+GGG | - | chr1_4:297547-297566 | Msa0141680:intron | 35.0% |
| CAATAGATGGTGAAGTGTAT+GGG | + | chr1_4:297667-297686 | None:intergenic | 35.0% | |
| !!! | CTTCTTTTTGGTAGTGATCA+GGG | - | chr1_4:297829-297848 | Msa0141680:intron | 35.0% |
| GCTCATTAAACGCAATTAGT+TGG | - | chr1_4:298636-298655 | Msa0141680:intron | 35.0% | |
| GATCGATGAAAACGAGATAT+TGG | - | chr1_4:298700-298719 | Msa0141680:intron | 35.0% | |
| TTCCAACAACGTATCTTTCA+TGG | - | chr1_4:298736-298755 | Msa0141680:intron | 35.0% | |
| ! | GTCAGTTTTGCCAATAAGAA+TGG | - | chr1_4:298758-298777 | Msa0141680:intron | 35.0% |
| TTTGCCAATAAGAATGGACA+AGG | - | chr1_4:298764-298783 | Msa0141680:intron | 35.0% | |
| AAGGATATTTATTCGCCAAC+CGG | - | chr1_4:298783-298802 | Msa0141680:intron | 35.0% | |
| CAAAAACAAAATCTCCCTTG+TGG | - | chr1_4:298864-298883 | Msa0141680:intron | 35.0% | |
| !!! | ATGCTGCTTTTTCTAAGGAT+TGG | - | chr1_4:298909-298928 | Msa0141680:intron | 35.0% |
| ACTTAAACCAGTTGCAGATT+GGG | + | chr1_4:298981-299000 | None:intergenic | 35.0% | |
| AATGCATGAGGTCAATTCAT+GGG | + | chr1_4:299013-299032 | None:intergenic | 35.0% | |
| TAATGCATGAGGTCAATTCA+TGG | + | chr1_4:299014-299033 | None:intergenic | 35.0% | |
| ! | TGTTCTAATAATGTTGGTGG+GGG | + | chr1_4:299041-299060 | None:intergenic | 35.0% |
| GATCCTGCTACTAGTATTAT+TGG | + | chr1_4:299127-299146 | None:intergenic | 35.0% | |
| ATGTAGAAAATGTTGCTGTC+TGG | + | chr1_4:299642-299661 | None:intergenic | 35.0% | |
| !!! | CTGGAAAATATTTTTTGCCC+AGG | + | chr1_4:299891-299910 | None:intergenic | 35.0% |
| AAACAACAACAAGATCGATG+GGG | + | chr1_4:300010-300029 | None:intergenic | 35.0% | |
| GAAACAACAACAAGATCGAT+GGG | + | chr1_4:300011-300030 | None:intergenic | 35.0% | |
| AGAAACAACAACAAGATCGA+TGG | + | chr1_4:300012-300031 | None:intergenic | 35.0% | |
| ACCATTGTAGTAATTGGTTG+GGG | + | chr1_4:300037-300056 | None:intergenic | 35.0% | |
| GAACCATTGTAGTAATTGGT+TGG | + | chr1_4:300039-300058 | None:intergenic | 35.0% | |
| ! | TTGAGATCTTGCTGACGTTT+TGG | - | chr1_4:296652-296671 | Msa0141680:three_prime_UTR | 40.0% |
| AAAGTGGATAGATTGCTTGG+AGG | - | chr1_4:296819-296838 | Msa0141680:CDS | 40.0% | |
| AAGTGGATAGATTGCTTGGA+GGG | - | chr1_4:296820-296839 | Msa0141680:CDS | 40.0% | |
| TGAGGATGATGTGAAGTACA+TGG | - | chr1_4:296869-296888 | Msa0141680:CDS | 40.0% | |
| GACACAAACATGTTCAACCA+TGG | + | chr1_4:296963-296982 | None:intergenic | 40.0% | |
| AAAATCAGCAATGTCGGTCT+TGG | + | chr1_4:296985-297004 | None:intergenic | 40.0% | |
| AAAATCCTCAAACATGGGGT+TGG | - | chr1_4:297023-297042 | Msa0141680:CDS | 40.0% | |
| !! | CAATAGTGGGTACACTAGAA+TGG | + | chr1_4:297054-297073 | None:intergenic | 40.0% |
| CTTACTTGCTTCGCAATAGT+GGG | + | chr1_4:297067-297086 | None:intergenic | 40.0% | |
| ACTTACTTGCTTCGCAATAG+TGG | + | chr1_4:297068-297087 | None:intergenic | 40.0% | |
| ATAGCTTTCCTTCCCTTTCA+CGG | + | chr1_4:297248-297267 | None:intergenic | 40.0% | |
| TTGACATGAACTGCTAAGGT+TGG | - | chr1_4:297315-297334 | Msa0141680:intron | 40.0% | |
| ATTAGGGTGAAAGAGGCAAA+TGG | + | chr1_4:297520-297539 | None:intergenic | 40.0% | |
| GAAGCAAATTAGGGTGAAAG+AGG | + | chr1_4:297527-297546 | None:intergenic | 40.0% | |
| GTGGTCCTTGAAGCAAATTA+GGG | + | chr1_4:297536-297555 | None:intergenic | 40.0% | |
| ! | AGGACCACCAATTTTAAACG+GGG | - | chr1_4:297548-297567 | Msa0141680:intron | 40.0% |
| ! | TTACCCACCCCGTTTAAAAT+TGG | + | chr1_4:297558-297577 | None:intergenic | 40.0% |
| GCACTTGTGTTGAACTAGAA+AGG | - | chr1_4:297614-297633 | Msa0141680:intron | 40.0% | |
| TGGTGAAGTGTATGGGAAAT+GGG | + | chr1_4:297660-297679 | None:intergenic | 40.0% | |
| ATGGTGAAGTGTATGGGAAA+TGG | + | chr1_4:297661-297680 | None:intergenic | 40.0% | |
| CCAATAGATGGTGAAGTGTA+TGG | + | chr1_4:297668-297687 | None:intergenic | 40.0% | |
| CCATACACTTCACCATCTAT+TGG | - | chr1_4:297665-297684 | Msa0141680:intron | 40.0% | |
| TTCACCATCTATTGGTCGTA+TGG | - | chr1_4:297673-297692 | Msa0141680:intron | 40.0% | |
| GTTACCATACGACCAATAGA+TGG | + | chr1_4:297680-297699 | None:intergenic | 40.0% | |
| !!! | GCTTCTTTTTGGTAGTGATC+AGG | - | chr1_4:297828-297847 | Msa0141680:intron | 40.0% |
| ! | TGATTTTATGGCTGTCCTAC+CGG | + | chr1_4:298280-298299 | None:intergenic | 40.0% |
| GGGAAGGAAATCTAGTAATC+AGG | - | chr1_4:298561-298580 | Msa0141680:intron | 40.0% | |
| AAAGAGATCAACGAGCTCAA+CGG | + | chr1_4:298610-298629 | None:intergenic | 40.0% | |
| ! | CTCGTTTTCATCGATCACAA+AGG | + | chr1_4:298696-298715 | None:intergenic | 40.0% |
| GACCATGAAAGATACGTTGT+TGG | + | chr1_4:298741-298760 | None:intergenic | 40.0% | |
| CATCAATATCCCTGTGTATG+TGG | + | chr1_4:298892-298911 | None:intergenic | 40.0% | |
| ! | GAATTTGGTTCCCTCTTCAA+GGG | - | chr1_4:298931-298950 | Msa0141680:intron | 40.0% |
| GACTTAAACCAGTTGCAGAT+TGG | + | chr1_4:298982-299001 | None:intergenic | 40.0% | |
| ! | GTTCTAATAATGTTGGTGGG+GGG | + | chr1_4:299040-299059 | None:intergenic | 40.0% |
| ATTAGAACATTGCATCGCGT+AGG | - | chr1_4:299052-299071 | Msa0141680:intron | 40.0% | |
| GGTTTAAGTCGAGACACTAA+AGG | + | chr1_4:299106-299125 | None:intergenic | 40.0% | |
| ! | GGAGTATTATGTAGAAGGTC+AGG | + | chr1_4:299154-299173 | None:intergenic | 40.0% |
| !! | TAGGTGGTGGTGGAATAAAT+CGG | + | chr1_4:299677-299696 | None:intergenic | 40.0% |
| ATTTATTCCACCACCACCTA+AGG | - | chr1_4:299677-299696 | Msa0141680:CDS | 40.0% | |
| TTTATTCCACCACCACCTAA+GGG | - | chr1_4:299678-299697 | Msa0141680:CDS | 40.0% | |
| ACCACCTACTGATAAATTGG+TGG | - | chr1_4:299701-299720 | Msa0141680:CDS | 40.0% | |
| TGTGCCACCAATTTATCAGT+AGG | + | chr1_4:299708-299727 | None:intergenic | 40.0% | |
| AGAATTGGATGCGACACTTT+GGG | - | chr1_4:299805-299824 | Msa0141680:CDS | 40.0% | |
| TCCCCAACCAATTACTACAA+TGG | - | chr1_4:300033-300052 | Msa0141680:intron | 40.0% | |
| TTGGCCATTTACGGAACTGT+GGG | + | chr1_4:296680-296699 | None:intergenic | 45.0% | |
| TTTGGCCATTTACGGAACTG+TGG | + | chr1_4:296681-296700 | None:intergenic | 45.0% | |
| !! | TGGAGGGTTGAGATTTGTTG+AGG | - | chr1_4:296836-296855 | Msa0141680:CDS | 45.0% |
| !! | GGAGGGTTGAGATTTGTTGA+GGG | - | chr1_4:296837-296856 | Msa0141680:CDS | 45.0% |
| TTTGCTACGTGTAAAGCGTG+TGG | - | chr1_4:296896-296915 | Msa0141680:CDS | 45.0% | |
| GAAGAGGATGCTAAAGCCAA+AGG | - | chr1_4:296918-296937 | Msa0141680:CDS | 45.0% | |
| AGGTGCATCCCATATACCTT+TGG | + | chr1_4:296937-296956 | None:intergenic | 45.0% | |
| AACATGTTCAACCATGGGTG+AGG | + | chr1_4:296957-296976 | None:intergenic | 45.0% | |
| AGCAAGAGAGATATGGACCA+AGG | - | chr1_4:297437-297456 | Msa0141680:intron | 45.0% | |
| GCAAGAGAGATATGGACCAA+GGG | - | chr1_4:297438-297457 | Msa0141680:intron | 45.0% | |
| CAAGAGAGATATGGACCAAG+GGG | - | chr1_4:297439-297458 | Msa0141680:intron | 45.0% | |
| TTGCAACCAAGGTCACAGTT+GGG | + | chr1_4:297478-297497 | None:intergenic | 45.0% | |
| TTTGCAACCAAGGTCACAGT+TGG | + | chr1_4:297479-297498 | None:intergenic | 45.0% | |
| GGTGGTCCTTGAAGCAAATT+AGG | + | chr1_4:297537-297556 | None:intergenic | 45.0% | |
| ! | ACCACCAATTTTAAACGGGG+TGG | - | chr1_4:297551-297570 | Msa0141680:intron | 45.0% |
| ! | CCACCAATTTTAAACGGGGT+GGG | - | chr1_4:297552-297571 | Msa0141680:intron | 45.0% |
| TAAACGGGGTGGGTAAGATT+TGG | - | chr1_4:297562-297581 | Msa0141680:intron | 45.0% | |
| GGTGAAGTGTATGGGAAATG+GGG | + | chr1_4:297659-297678 | None:intergenic | 45.0% | |
| ! | TCAGCTGTTTCATCACACTG+CGG | - | chr1_4:297701-297720 | Msa0141680:intron | 45.0% |
| TGAGCTTAGCTCAGTTGGTT+GGG | + | chr1_4:297887-297906 | None:intergenic | 45.0% | |
| TAGGTTCCCAGTTGCCTTAT+TGG | + | chr1_4:298248-298267 | None:intergenic | 45.0% | |
| TGGGAACCTACATTCCTTTC+CGG | - | chr1_4:298258-298277 | Msa0141680:intron | 45.0% | |
| AACCTACATTCCTTTCCGGT+AGG | - | chr1_4:298262-298281 | Msa0141680:intron | 45.0% | |
| !!! | GAGCCACTTTTTTCTGTGCA+TGG | - | chr1_4:298467-298486 | Msa0141680:intron | 45.0% |
| GTGCCATGCACAGAAAAAAG+TGG | + | chr1_4:298473-298492 | None:intergenic | 45.0% | |
| GTTGAGCTCGTTGATCTCTT+TGG | - | chr1_4:298609-298628 | Msa0141680:intron | 45.0% | |
| !! | AACCTGGTGTCACTGTAATC+CGG | + | chr1_4:298805-298824 | None:intergenic | 45.0% |
| CTGTGTATGTGGAACCACAA+GGG | + | chr1_4:298881-298900 | None:intergenic | 45.0% | |
| CTTGTGGTTCCACATACACA+GGG | - | chr1_4:298880-298899 | Msa0141680:intron | 45.0% | |
| ! | GGAATTTGGTTCCCTCTTCA+AGG | - | chr1_4:298930-298949 | Msa0141680:intron | 45.0% |
| GGTTTGAGTCGAGACATTGA+AGG | + | chr1_4:299175-299194 | None:intergenic | 45.0% | |
| ATGTCTCGACTCAAACCACT+AGG | - | chr1_4:299178-299197 | Msa0141680:intron | 45.0% | |
| TTATCAGTAGGTGGTCCCTT+AGG | + | chr1_4:299696-299715 | None:intergenic | 45.0% | |
| GGGACCACCTACTGATAAAT+TGG | - | chr1_4:299698-299717 | Msa0141680:CDS | 45.0% | |
| GCCACCAATTTATCAGTAGG+TGG | + | chr1_4:299705-299724 | None:intergenic | 45.0% | |
| ACTACACGTCTCAGGAGAAT+TGG | - | chr1_4:299790-299809 | Msa0141680:CDS | 45.0% | |
| GAGAATTGGATGCGACACTT+TGG | - | chr1_4:299804-299823 | Msa0141680:CDS | 45.0% | |
| GAATTGGATGCGACACTTTG+GGG | - | chr1_4:299806-299825 | Msa0141680:CDS | 45.0% | |
| ! | TGCGACACTTTGGGGATAAA+TGG | - | chr1_4:299814-299833 | Msa0141680:CDS | 45.0% |
| ! | CATTGGCTATTCTTGCACCT+GGG | - | chr1_4:299871-299890 | Msa0141680:CDS | 45.0% |
| !!! | AATGATTTTATTAAAAAATT+GGG | + | chr1_4:298098-298117 | None:intergenic | 5.0% |
| !!! | AAATGATTTTATTAAAAAAT+TGG | + | chr1_4:298099-298118 | None:intergenic | 5.0% |
| !!! | TTAAAATCTTTTTTTTTTTT+AGG | - | chr1_4:298539-298558 | Msa0141680:intron | 5.0% |
| !!! | TAAAATCTTTTTTTTTTTTA+GGG | - | chr1_4:298540-298559 | Msa0141680:intron | 5.0% |
| TGGCCATTTACGGAACTGTG+GGG | + | chr1_4:296679-296698 | None:intergenic | 50.0% | |
| ACGTGTAAAGCGTGTGGAAG+AGG | - | chr1_4:296902-296921 | Msa0141680:CDS | 50.0% | |
| ATCCTCAAACATGGGGTTGG+TGG | - | chr1_4:297026-297045 | Msa0141680:CDS | 50.0% | |
| TCACAGTTGGGTGTTCCTAG+TGG | + | chr1_4:297466-297485 | None:intergenic | 50.0% | |
| GTGAAAGAGGCAAATGGCTC+AGG | + | chr1_4:297514-297533 | None:intergenic | 50.0% | |
| ! | CCCACCCCGTTTAAAATTGG+TGG | + | chr1_4:297555-297574 | None:intergenic | 50.0% |
| GTGGGTAAGATTTGGAGGGT+GGG | - | chr1_4:297570-297589 | Msa0141680:intron | 50.0% | |
| ! | TGGGAAATGGGGTCCCATTT+TGG | + | chr1_4:297648-297667 | None:intergenic | 50.0% |
| GCAGTGTGATGAAACAGCTG+AGG | + | chr1_4:297702-297721 | None:intergenic | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | + | chr1_4:297888-297907 | None:intergenic | 50.0% | |
| CATCGTGAGCTTAGCTCAGT+TGG | + | chr1_4:297892-297911 | None:intergenic | 50.0% | |
| TCACTATCACTCCTTGCCTG+TGG | - | chr1_4:298218-298237 | Msa0141680:intron | 50.0% | |
| TATCACTCCTTGCCTGTGGT+TGG | - | chr1_4:298222-298241 | Msa0141680:intron | 50.0% | |
| TTATTGGCCAACCACAGGCA+AGG | + | chr1_4:298232-298251 | None:intergenic | 50.0% | |
| ! | TTGCCTGTGGTTGGCCAATA+AGG | - | chr1_4:298231-298250 | Msa0141680:intron | 50.0% |
| ! | TTGCCTTATTGGCCAACCAC+AGG | + | chr1_4:298237-298256 | None:intergenic | 50.0% |
| ! | TGGTTGGCCAATAAGGCAAC+TGG | - | chr1_4:298238-298257 | Msa0141680:intron | 50.0% |
| ! | GGTTGGCCAATAAGGCAACT+GGG | - | chr1_4:298239-298258 | Msa0141680:intron | 50.0% |
| GTCCTACCGGAAAGGAATGT+AGG | + | chr1_4:298267-298286 | None:intergenic | 50.0% | |
| TTATGGCTGTCCTACCGGAA+AGG | + | chr1_4:298275-298294 | None:intergenic | 50.0% | |
| GAGCTCGTTGATCTCTTTGG+TGG | - | chr1_4:298612-298631 | Msa0141680:intron | 50.0% | |
| !! | TGGTGTCACTGTAATCCGGT+TGG | + | chr1_4:298801-298820 | None:intergenic | 50.0% |
| AACCGGATTACAGTGACACC+AGG | - | chr1_4:298800-298819 | Msa0141680:intron | 50.0% | |
| CCTGTGTATGTGGAACCACA+AGG | + | chr1_4:298882-298901 | None:intergenic | 50.0% | |
| CCTTGTGGTTCCACATACAC+AGG | - | chr1_4:298879-298898 | Msa0141680:intron | 50.0% | |
| AGTTGCAGATTGGGCAAGGT+GGG | + | chr1_4:298972-298991 | None:intergenic | 50.0% | |
| AACCAGTTGCAGATTGGGCA+AGG | + | chr1_4:298976-298995 | None:intergenic | 50.0% | |
| GTGGGGGGAATTAATGCATG+AGG | + | chr1_4:299025-299044 | None:intergenic | 50.0% | |
| ACCACTAGGTTACTCGATCG+AGG | - | chr1_4:299192-299211 | Msa0141680:intron | 50.0% | |
| ACCTCGATCGAGTAACCTAG+TGG | + | chr1_4:299196-299215 | None:intergenic | 50.0% | |
| CAGGTGGGATGATAGACACT+CGG | - | chr1_4:299608-299627 | Msa0141680:intron | 50.0% | |
| GGATGATAGACACTCGGTAG+TGG | - | chr1_4:299614-299633 | Msa0141680:intron | 50.0% | |
| TCTTCCTCACTACACGTCTC+AGG | - | chr1_4:299782-299801 | Msa0141680:CDS | 50.0% | |
| TTCTCCTGAGACGTGTAGTG+AGG | + | chr1_4:299789-299808 | None:intergenic | 50.0% | |
| CCAGGTGCAAGAATAGCCAA+TGG | + | chr1_4:299873-299892 | None:intergenic | 50.0% | |
| ! | CCATTGGCTATTCTTGCACC+TGG | - | chr1_4:299870-299889 | Msa0141680:CDS | 50.0% |
| GGTCCCCACAGTTCCGTAAA+TGG | - | chr1_4:296673-296692 | Msa0141680:three_prime_UTR | 55.0% | |
| TATGGGATGCACCTCACCCA+TGG | - | chr1_4:296943-296962 | Msa0141680:CDS | 55.0% | |
| GACCACCAACCCCATGTTTG+AGG | + | chr1_4:297031-297050 | None:intergenic | 55.0% | |
| TATGGACCAAGGGGTCCACT+AGG | - | chr1_4:297448-297467 | Msa0141680:intron | 55.0% | |
| GGAACACCCAACTGTGACCT+TGG | - | chr1_4:297469-297488 | Msa0141680:intron | 55.0% | |
| ACGGGGTGGGTAAGATTTGG+AGG | - | chr1_4:297565-297584 | Msa0141680:intron | 55.0% | |
| CGGGGTGGGTAAGATTTGGA+GGG | - | chr1_4:297566-297585 | Msa0141680:intron | 55.0% | |
| GGTGGGTAAGATTTGGAGGG+TGG | - | chr1_4:297569-297588 | Msa0141680:intron | 55.0% | |
| TTGCAGATTGGGCAAGGTGG+GGG | + | chr1_4:298970-298989 | None:intergenic | 55.0% | |
| GTTGCAGATTGGGCAAGGTG+GGG | + | chr1_4:298971-298990 | None:intergenic | 55.0% | |
| CAGTTGCAGATTGGGCAAGG+TGG | + | chr1_4:298973-298992 | None:intergenic | 55.0% | |
| CACCTTGCCCAATCTGCAAC+TGG | - | chr1_4:298971-298990 | Msa0141680:intron | 55.0% | |
| TCAGTAGGTGGTCCCTTAGG+TGG | + | chr1_4:299693-299712 | None:intergenic | 55.0% | |
| ! | GGTGTTCCTAGTGGACCCCT+TGG | + | chr1_4:297457-297476 | None:intergenic | 60.0% |
| ATTGGGCAAGGTGGGGGAGA+GGG | + | chr1_4:298964-298983 | None:intergenic | 60.0% | |
| GTAGGTGGTCCCTTAGGTGG+TGG | + | chr1_4:299690-299709 | None:intergenic | 60.0% | |
| GGGGAGGGGACCCTTGAAGA+GGG | + | chr1_4:298944-298963 | None:intergenic | 65.0% | |
| AGGGGAGGGGACCCTTGAAG+AGG | + | chr1_4:298945-298964 | None:intergenic | 65.0% | |
| TTGGGCAAGGTGGGGGAGAG+GGG | + | chr1_4:298963-298982 | None:intergenic | 65.0% | |
| GATTGGGCAAGGTGGGGGAG+AGG | + | chr1_4:298965-298984 | None:intergenic | 65.0% | |
| ! | GGTGGTCCCTTAGGTGGTGG+TGG | + | chr1_4:299687-299706 | None:intergenic | 65.0% |
| CAAGGTGGGGGAGAGGGGAG+GGG | + | chr1_4:298958-298977 | None:intergenic | 70.0% | |
| GCAAGGTGGGGGAGAGGGGA+GGG | + | chr1_4:298959-298978 | None:intergenic | 70.0% | |
| GGCAAGGTGGGGGAGAGGGG+AGG | + | chr1_4:298960-298979 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 296595 | 300138 | 296595 | ID=Msa0141680;Name=Msa0141680 |
| chr1_4 | mRNA | 296595 | 300138 | 296595 | ID=Msa0141680-mRNA-1;Parent=Msa0141680;Name=Msa0141680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|0.66|1|1|3|212|195 |
| chr1_4 | exon | 296595 | 297122 | 296595 | ID=Msa0141680-mRNA-1:exon:39;Parent=Msa0141680-mRNA-1 |
| chr1_4 | exon | 299652 | 299914 | 299652 | ID=Msa0141680-mRNA-1:exon:38;Parent=Msa0141680-mRNA-1 |
| chr1_4 | exon | 300130 | 300138 | 300130 | ID=Msa0141680-mRNA-1:exon:37;Parent=Msa0141680-mRNA-1 |
| chr1_4 | CDS | 300130 | 300138 | 300130 | ID=Msa0141680-mRNA-1:cds;Parent=Msa0141680-mRNA-1 |
| chr1_4 | CDS | 299652 | 299914 | 299652 | ID=Msa0141680-mRNA-1:cds;Parent=Msa0141680-mRNA-1 |
| chr1_4 | CDS | 296807 | 297122 | 296807 | ID=Msa0141680-mRNA-1:cds;Parent=Msa0141680-mRNA-1 |
| chr1_4 | three_prime_UTR | 296595 | 296806 | 296595 | ID=Msa0141680-mRNA-1:three_prime_utr;Parent=Msa0141680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
