Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298910 | XP_013457758.1 | 95.518 | 714 | 32 | 0 | 1 | 714 | 1 | 714 | 0.0 | 1320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298910 | sp|Q8VY13|FRO8_ARATH | 50.626 | 719 | 321 | 14 | 20 | 714 | 20 | 728 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298910 | A0A072UPM9 | 95.518 | 714 | 32 | 0 | 1 | 714 | 1 | 714 | 0.0 | 1320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042510 | Msa1298910 | -0.802510 | 5.421519e-49 | -8.615850e-47 |
| Msa0077390 | Msa1298910 | 0.824700 | 7.004379e-54 | -8.615850e-47 |
| Msa0078370 | Msa1298910 | 0.813174 | 2.924439e-51 | -8.615850e-47 |
| Msa0089150 | Msa1298910 | -0.837712 | 4.421950e-57 | -8.615850e-47 |
| Msa0090280 | Msa1298910 | -0.808759 | 2.644414e-50 | -8.615850e-47 |
| Msa0093440 | Msa1298910 | 0.825739 | 3.977767e-54 | -8.615850e-47 |
| Msa0621170 | Msa1298910 | -0.803165 | 3.970452e-49 | -8.615850e-47 |
| Msa0621190 | Msa1298910 | -0.819118 | 1.373881e-52 | -8.615850e-47 |
| Msa0641020 | Msa1298910 | 0.881201 | 2.921131e-70 | -8.615850e-47 |
| Msa0641030 | Msa1298910 | 0.859212 | 4.836814e-63 | -8.615850e-47 |
| Msa0660870 | Msa1298910 | 0.828711 | 7.721796e-55 | -8.615850e-47 |
| Msa0679560 | Msa1298910 | 0.871422 | 6.917968e-67 | -8.615850e-47 |
| Msa0700370 | Msa1298910 | -0.811958 | 5.396587e-51 | -8.615850e-47 |
| Msa0716750 | Msa1298910 | 0.807565 | 4.749575e-50 | -8.615850e-47 |
| Msa0739410 | Msa1298910 | 0.805424 | 1.343966e-49 | -8.615850e-47 |
| Msa0757980 | Msa1298910 | 0.820028 | 8.513651e-53 | -8.615850e-47 |
| Msa0776030 | Msa1298910 | 0.825407 | 4.766081e-54 | -8.615850e-47 |
| Msa0799280 | Msa1298910 | 0.822982 | 1.769498e-53 | -8.615850e-47 |
| Msa0839230 | Msa1298910 | 0.833368 | 5.550410e-56 | -8.615850e-47 |
| Msa0141680 | Msa1298910 | 0.809057 | 2.284149e-50 | -8.615850e-47 |
| Msa0164830 | Msa1298910 | 0.809994 | 1.436709e-50 | -8.615850e-47 |
| Msa0201330 | Msa1298910 | 0.802282 | 6.041639e-49 | -8.615850e-47 |
| Msa0225370 | Msa1298910 | 0.815799 | 7.683470e-52 | -8.615850e-47 |
| Msa0227800 | Msa1298910 | 0.813173 | 2.926301e-51 | -8.615850e-47 |
| Msa1232330 | Msa1298910 | 0.800092 | 1.695037e-48 | -8.615850e-47 |
| Msa1244300 | Msa1298910 | 0.833394 | 5.469874e-56 | -8.615850e-47 |
| Msa1246040 | Msa1298910 | 0.976585 | 4.159013e-142 | -8.615850e-47 |
| Msa1275340 | Msa1298910 | 0.802180 | 6.339238e-49 | -8.615850e-47 |
| Msa1298910 | Msa1330530 | 0.993285 | 1.097416e-198 | -8.615850e-47 |
| Msa1298910 | Msa1331730 | 0.800091 | 1.695314e-48 | -8.615850e-47 |
| Msa1298910 | Msa1375800 | 0.828230 | 1.008857e-54 | -8.615850e-47 |
| Msa1298910 | Msa1387750 | -0.827306 | 1.683084e-54 | -8.615850e-47 |
| Msa1298910 | Msa1445250 | 0.885859 | 5.650439e-72 | -8.615850e-47 |
| Msa1298910 | Msa1457020 | 0.817885 | 2.615128e-52 | -8.615850e-47 |
| Msa1298910 | Msa1457070 | 0.825068 | 5.732582e-54 | -8.615850e-47 |
| Msa1298910 | Msa1466810 | 0.810265 | 1.256325e-50 | -8.615850e-47 |
| Msa0365360 | Msa1298910 | 0.815228 | 1.029177e-51 | -8.615850e-47 |
| Msa0370480 | Msa1298910 | 0.870904 | 1.025266e-66 | -8.615850e-47 |
| Msa0416470 | Msa1298910 | -0.821769 | 3.384985e-53 | -8.615850e-47 |
| Msa0426820 | Msa1298910 | -0.812590 | 3.927261e-51 | -8.615850e-47 |
| Msa0431250 | Msa1298910 | 0.804936 | 1.700176e-49 | -8.615850e-47 |
| Msa0439700 | Msa1298910 | 0.806421 | 8.294539e-50 | -8.615850e-47 |
| Msa0440040 | Msa1298910 | 0.846791 | 1.739196e-59 | -8.615850e-47 |
| Msa0452680 | Msa1298910 | 0.828826 | 7.244124e-55 | -8.615850e-47 |
| Msa0457370 | Msa1298910 | 0.861301 | 1.129242e-63 | -8.615850e-47 |
| Msa0467740 | Msa1298910 | -0.831733 | 1.411739e-55 | -8.615850e-47 |
| Msa0470230 | Msa1298910 | -0.801549 | 8.544807e-49 | -8.615850e-47 |
| Msa0998890 | Msa1298910 | -0.847209 | 1.336927e-59 | -8.615850e-47 |
| Msa1001210 | Msa1298910 | 0.821618 | 3.668553e-53 | -8.615850e-47 |
| Msa1008340 | Msa1298910 | 0.822199 | 2.691034e-53 | -8.615850e-47 |
| Msa1027280 | Msa1298910 | 0.820657 | 6.107821e-53 | -8.615850e-47 |
| Msa1083410 | Msa1298910 | 0.820791 | 5.692426e-53 | -8.615850e-47 |
| Msa0241580 | Msa1298910 | 0.813747 | 2.189082e-51 | -8.615850e-47 |
| Msa0243930 | Msa1298910 | 0.800114 | 1.677215e-48 | -8.615850e-47 |
| Msa0261260 | Msa1298910 | 0.833502 | 5.141382e-56 | -8.615850e-47 |
| Msa0264370 | Msa1298910 | 0.834505 | 2.883921e-56 | -8.615850e-47 |
| Msa0266380 | Msa1298910 | 0.802844 | 4.625788e-49 | -8.615850e-47 |
| Msa0279490 | Msa1298910 | 0.809816 | 1.569081e-50 | -8.615850e-47 |
| Msa0282590 | Msa1298910 | 0.819338 | 1.223750e-52 | -8.615850e-47 |
| Msa0299200 | Msa1298910 | 0.834838 | 2.377099e-56 | -8.615850e-47 |
| Msa0304990 | Msa1298910 | 0.816461 | 5.464829e-52 | -8.615850e-47 |
| Msa0307510 | Msa1298910 | 0.864975 | 8.256088e-65 | -8.615850e-47 |
| Msa0330670 | Msa1298910 | 0.803727 | 3.035993e-49 | -8.615850e-47 |
| Msa0334170 | Msa1298910 | 0.818540 | 1.858308e-52 | -8.615850e-47 |
| Msa1139240 | Msa1298910 | 0.829017 | 6.512974e-55 | -8.615850e-47 |
| Msa1190460 | Msa1298910 | 0.821662 | 3.584024e-53 | -8.615850e-47 |
| Msa1208760 | Msa1298910 | 0.839936 | 1.175900e-57 | -8.615850e-47 |
| Msa1209560 | Msa1298910 | 0.974820 | 7.805451e-139 | -8.615850e-47 |
| Msa1209570 | Msa1298910 | 0.808671 | 2.761284e-50 | -8.615850e-47 |
| Msa1219040 | Msa1298910 | 0.806080 | 9.784651e-50 | -8.615850e-47 |
| Msa0513170 | Msa1298910 | 0.803289 | 3.743455e-49 | -8.615850e-47 |
| Msa0514130 | Msa1298910 | -0.824049 | 9.960746e-54 | -8.615850e-47 |
| Msa0528970 | Msa1298910 | 0.806347 | 8.598232e-50 | -8.615850e-47 |
| Msa0544930 | Msa1298910 | 0.860023 | 2.756814e-63 | -8.615850e-47 |
| Msa0884890 | Msa1298910 | 0.819800 | 9.599700e-53 | -8.615850e-47 |
| Msa0885320 | Msa1298910 | 0.815353 | 9.657551e-52 | -8.615850e-47 |
| Msa0900200 | Msa1298910 | 0.802599 | 5.197664e-49 | -8.615850e-47 |
| Msa0912200 | Msa1298910 | 0.803074 | 4.146038e-49 | -8.615850e-47 |
| Msa0912210 | Msa1298910 | 0.806260 | 8.968084e-50 | -8.615850e-47 |
| Msa0912230 | Msa1298910 | 0.811417 | 7.075601e-51 | -8.615850e-47 |
| Msa0912470 | Msa1298910 | 0.873584 | 1.312585e-67 | -8.615850e-47 |
| Msa0921220 | Msa1298910 | 0.816432 | 5.546006e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298910 | MtrunA17_Chr4g0058571 | 95.559 | 698 | 31 | 0 | 17 | 714 | 33 | 730 | 0.0 | 1296 |
| Msa1298910 | MtrunA17_Chr1g0202741 | 32.764 | 702 | 423 | 16 | 10 | 687 | 9 | 685 | 1.53e-125 | 389 |
| Msa1298910 | MtrunA17_Chr1g0202731 | 32.568 | 697 | 431 | 18 | 10 | 687 | 14 | 690 | 1.35e-118 | 371 |
| Msa1298910 | MtrunA17_Chr8g0348521 | 32.725 | 712 | 417 | 16 | 8 | 689 | 7 | 686 | 1.09e-113 | 358 |
| Msa1298910 | MtrunA17_Chr8g0348531 | 37.079 | 534 | 310 | 12 | 22 | 543 | 34 | 553 | 1.94e-106 | 340 |
| Msa1298910 | MtrunA17_Chr2g0291481 | 30.233 | 688 | 443 | 15 | 44 | 714 | 73 | 740 | 2.31e-90 | 298 |
| Msa1298910 | MtrunA17_Chr8g0349071 | 43.273 | 275 | 147 | 5 | 231 | 502 | 4 | 272 | 4.07e-62 | 209 |
| Msa1298910 | MtrunA17_Chr4g0061441 | 26.074 | 326 | 188 | 12 | 168 | 446 | 349 | 668 | 9.82e-24 | 107 |
| Msa1298910 | MtrunA17_Chr8g0387591 | 23.377 | 385 | 230 | 11 | 168 | 494 | 430 | 807 | 5.18e-20 | 95.5 |
| Msa1298910 | MtrunA17_Chr1g0192121 | 26.016 | 246 | 139 | 6 | 241 | 446 | 476 | 718 | 1.09e-18 | 90.9 |
| Msa1298910 | MtrunA17_Chr3g0131361 | 25.568 | 352 | 186 | 13 | 168 | 446 | 386 | 734 | 1.29e-18 | 90.9 |
| Msa1298910 | MtrunA17_Chr3g0131401 | 26.531 | 245 | 132 | 8 | 231 | 446 | 523 | 748 | 4.93e-18 | 89.0 |
| Msa1298910 | MtrunA17_Chr8g0385411 | 26.540 | 211 | 124 | 6 | 264 | 446 | 520 | 727 | 2.01e-17 | 87.0 |
| Msa1298910 | MtrunA17_Chr7g0272591 | 24.335 | 263 | 156 | 7 | 223 | 446 | 472 | 730 | 1.86e-16 | 84.0 |
| Msa1298910 | MtrunA17_Chr3g0131381 | 26.027 | 219 | 130 | 6 | 257 | 446 | 527 | 742 | 5.78e-16 | 82.4 |
| Msa1298910 | MtrunA17_Chr8g0349061 | 31.111 | 135 | 86 | 3 | 8 | 136 | 7 | 140 | 4.14e-15 | 73.6 |
| Msa1298910 | MtrunA17_Chr2g0301511 | 25.513 | 341 | 192 | 15 | 168 | 450 | 420 | 756 | 5.04e-15 | 79.3 |
| Msa1298910 | MtrunA17_Chr7g0238371 | 26.484 | 219 | 122 | 7 | 264 | 446 | 469 | 684 | 1.89e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298910 | AT5G50160.1 | 50.626 | 719 | 321 | 14 | 20 | 714 | 20 | 728 | 0.0 | 709 |
| Msa1298910 | AT5G50160.2 | 48.474 | 557 | 256 | 12 | 181 | 714 | 1 | 549 | 2.30e-179 | 523 |
| Msa1298910 | AT1G23020.7 | 34.801 | 704 | 390 | 18 | 10 | 688 | 15 | 674 | 6.48e-129 | 398 |
| Msa1298910 | AT1G23020.4 | 34.653 | 707 | 390 | 18 | 10 | 688 | 15 | 677 | 1.30e-128 | 397 |
| Msa1298910 | AT1G23020.3 | 34.653 | 707 | 390 | 18 | 10 | 688 | 15 | 677 | 1.30e-128 | 397 |
| Msa1298910 | AT1G01590.1 | 33.333 | 699 | 421 | 14 | 10 | 688 | 15 | 688 | 1.62e-128 | 397 |
| Msa1298910 | AT1G23020.1 | 34.653 | 707 | 390 | 18 | 10 | 688 | 38 | 700 | 1.78e-128 | 398 |
| Msa1298910 | AT1G23020.5 | 34.653 | 707 | 390 | 18 | 10 | 688 | 38 | 700 | 1.78e-128 | 398 |
| Msa1298910 | AT1G23020.6 | 34.746 | 708 | 389 | 19 | 10 | 688 | 15 | 678 | 2.15e-128 | 397 |
| Msa1298910 | AT1G23020.2 | 34.746 | 708 | 389 | 19 | 10 | 688 | 38 | 701 | 2.78e-128 | 397 |
| Msa1298910 | AT1G01580.1 | 32.482 | 705 | 428 | 19 | 11 | 689 | 28 | 710 | 2.74e-120 | 377 |
| Msa1298910 | AT1G01580.2 | 32.432 | 703 | 427 | 18 | 11 | 687 | 106 | 786 | 2.29e-119 | 377 |
| Msa1298910 | AT5G23980.1 | 32.764 | 702 | 421 | 19 | 10 | 687 | 8 | 682 | 1.25e-114 | 361 |
| Msa1298910 | AT5G23990.2 | 32.244 | 704 | 422 | 21 | 10 | 687 | 8 | 682 | 1.02e-109 | 348 |
| Msa1298910 | AT5G49740.1 | 29.610 | 743 | 455 | 14 | 10 | 714 | 35 | 747 | 9.08e-97 | 315 |
| Msa1298910 | AT5G23990.3 | 32.743 | 565 | 331 | 13 | 149 | 689 | 13 | 552 | 4.67e-96 | 308 |
| Msa1298910 | AT5G23990.1 | 32.562 | 562 | 330 | 13 | 152 | 689 | 106 | 642 | 8.72e-93 | 303 |
| Msa1298910 | AT5G49730.1 | 29.275 | 731 | 471 | 16 | 10 | 714 | 28 | 738 | 2.92e-90 | 298 |
| Msa1298910 | AT5G49740.3 | 29.927 | 685 | 416 | 13 | 10 | 656 | 35 | 693 | 1.13e-87 | 290 |
| Msa1298910 | AT5G49740.2 | 33.013 | 521 | 305 | 6 | 10 | 502 | 35 | 539 | 3.77e-87 | 284 |
| Msa1298910 | AT5G49730.2 | 32.480 | 508 | 323 | 8 | 10 | 502 | 28 | 530 | 9.91e-81 | 267 |
| Msa1298910 | AT5G51060.1 | 24.781 | 343 | 189 | 12 | 168 | 446 | 400 | 737 | 3.33e-21 | 99.8 |
| Msa1298910 | AT4G25090.2 | 24.225 | 355 | 198 | 12 | 168 | 460 | 340 | 685 | 3.67e-21 | 99.4 |
| Msa1298910 | AT4G25090.1 | 23.944 | 355 | 199 | 11 | 168 | 460 | 352 | 697 | 4.05e-21 | 99.4 |
| Msa1298910 | AT1G09090.2 | 26.394 | 269 | 155 | 7 | 225 | 453 | 426 | 691 | 1.77e-20 | 97.1 |
| Msa1298910 | AT5G47910.1 | 27.066 | 351 | 188 | 14 | 168 | 458 | 425 | 767 | 3.97e-20 | 96.3 |
| Msa1298910 | AT1G19230.1 | 31.193 | 218 | 117 | 7 | 257 | 446 | 536 | 748 | 1.10e-19 | 94.7 |
| Msa1298910 | AT1G19230.2 | 31.193 | 218 | 117 | 7 | 257 | 446 | 562 | 774 | 1.28e-19 | 94.4 |
| Msa1298910 | AT1G64060.1 | 27.103 | 214 | 129 | 6 | 257 | 446 | 558 | 768 | 2.27e-18 | 90.5 |
| Msa1298910 | AT5G07390.2 | 28.910 | 211 | 119 | 7 | 264 | 446 | 490 | 697 | 1.66e-16 | 84.3 |
| Msa1298910 | AT5G07390.1 | 28.910 | 211 | 119 | 7 | 264 | 446 | 522 | 729 | 1.78e-16 | 84.3 |
| Msa1298910 | AT4G11230.1 | 24.107 | 336 | 195 | 11 | 168 | 446 | 423 | 755 | 3.67e-15 | 80.1 |
| Msa1298910 | AT1G09090.1 | 27.128 | 188 | 110 | 5 | 225 | 388 | 426 | 610 | 5.96e-12 | 69.3 |
| Msa1298910 | AT3G45810.1 | 26.432 | 227 | 129 | 6 | 256 | 446 | 497 | 721 | 1.84e-11 | 68.2 |
Find 137 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTTTCTTCTTCTAATT+TGG | 0.027502 | 8_3:+59841695 | None:intergenic |
| ATAATTGCTATTGCTATAAT+TGG | 0.176243 | 8_3:-59842821 | Msa1298910:CDS |
| AAACCACATTCAAGGATAAA+AGG | 0.182915 | 8_3:+59839898 | None:intergenic |
| CGCCAGCACTTTGTTTGTTT+GGG | 0.192217 | 8_3:-59842191 | Msa1298910:CDS |
| ACACTTTAGTAGTCTAAATT+TGG | 0.194761 | 8_3:-59840074 | Msa1298910:exon |
| CAAGAGTTGTATTGGTATTT+AGG | 0.198094 | 8_3:+59840051 | None:intergenic |
| ATTATAGCAATAGCAATTAT+TGG | 0.198333 | 8_3:+59842824 | None:intergenic |
| AAACTTTCTTCTTCTAATTT+GGG | 0.215669 | 8_3:+59841696 | None:intergenic |
| GCCATCCAAACTGGACTTTC+TGG | 0.223665 | 8_3:+59840696 | None:intergenic |
| GTTTGGATGGCTGCTATTAC+TGG | 0.223975 | 8_3:-59840684 | Msa1298910:CDS |
| GAAGAACATGAAGTTCATTT+TGG | 0.229533 | 8_3:-59840378 | Msa1298910:CDS |
| GGAGGCAGGCCTAACTTTAA+AGG | 0.237785 | 8_3:-59840357 | Msa1298910:intron |
| TCCATATGCTGCATAATAAT+TGG | 0.243506 | 8_3:+59840719 | None:intergenic |
| GCGCCAGCACTTTGTTTGTT+TGG | 0.246543 | 8_3:-59842192 | Msa1298910:CDS |
| AACTCCATTTCTGAGCATTT+TGG | 0.264485 | 8_3:-59840991 | Msa1298910:CDS |
| CCAAAGAAAAGACTCCTTCT+TGG | 0.273461 | 8_3:-59840581 | Msa1298910:CDS |
| TTGGCTGTATTTCGTATATT+TGG | 0.274271 | 8_3:-59842289 | Msa1298910:CDS |
| TTGATTTGAACAGATATATT+AGG | 0.280035 | 8_3:-59840260 | Msa1298910:intron |
| ACAGCCAACCCTCTTAAAAT+TGG | 0.296428 | 8_3:+59842304 | None:intergenic |
| TAAACAAAGGTGCTGATAAA+AGG | 0.299046 | 8_3:-59841186 | Msa1298910:CDS |
| TTGCAGCTTGGATTTCTCTT+TGG | 0.308763 | 8_3:-59843072 | Msa1298910:CDS |
| CAGACATGACAGTGTGATTA+TGG | 0.308804 | 8_3:-59841033 | Msa1298910:CDS |
| TCCAATTATTATGCAGCATA+TGG | 0.312731 | 8_3:-59840720 | Msa1298910:CDS |
| AATTTAGTACTTGGATCTTT+AGG | 0.315372 | 8_3:+59841469 | None:intergenic |
| GTCTGTGGAACGCCTTTCTT+AGG | 0.318947 | 8_3:+59840459 | None:intergenic |
| ATGGAATTACCTTTAAAGTT+AGG | 0.331214 | 8_3:+59840348 | None:intergenic |
| ACCTCACCTCACTTTGTATA+TGG | 0.331893 | 8_3:+59842158 | None:intergenic |
| AACTACCAGTATTTCAAAAC+TGG | 0.337767 | 8_3:+59842587 | None:intergenic |
| TTCAAATATATAACACTTGT+AGG | 0.341605 | 8_3:+59841349 | None:intergenic |
| TTTCAGATGGAACTATAGTA+TGG | 0.345437 | 8_3:+59840619 | None:intergenic |
| TTTGTTAGCAGAAGCTTGTT+TGG | 0.351150 | 8_3:-59842341 | Msa1298910:CDS |
| TGGATCTGATATTGGAGTTT+TGG | 0.352657 | 8_3:-59840216 | Msa1298910:CDS |
| TGCAGAAGTGGAAGGAGTTC+AGG | 0.369132 | 8_3:-59842666 | Msa1298910:intron |
| GAATCTGAGTGTTTGAAGTT+AGG | 0.378131 | 8_3:-59840143 | Msa1298910:CDS |
| ACAGTTTGTCAAGGCTAAAA+AGG | 0.388275 | 8_3:+59841572 | None:intergenic |
| CATGATGTTCTCATCAGCTT+TGG | 0.389412 | 8_3:+59841273 | None:intergenic |
| AATGAACTTCATGTTCTTCA+AGG | 0.391345 | 8_3:+59840382 | None:intergenic |
| GTAATAGCAGCCATCCAAAC+TGG | 0.395706 | 8_3:+59840687 | None:intergenic |
| ACAACTAAGCGTGGGAATTA+CGG | 0.405471 | 8_3:-59840796 | Msa1298910:CDS |
| CTTAGAATAGCAACAAGGTT+TGG | 0.405833 | 8_3:-59842364 | Msa1298910:CDS |
| TGTACAAGTTGTATCCTTGA+TGG | 0.413043 | 8_3:+59840933 | None:intergenic |
| AACCACATTCAAGGATAAAA+GGG | 0.418747 | 8_3:+59839899 | None:intergenic |
| AATTAGCTCCACAGCTTCAC+AGG | 0.423110 | 8_3:+59841495 | None:intergenic |
| ACTGATTCCTTCATGCTCTC+AGG | 0.423606 | 8_3:+59840185 | None:intergenic |
| CTACATTATTTGTGGTGCTC+TGG | 0.430461 | 8_3:+59839951 | None:intergenic |
| TGGGGATAAGCACTTCTATA+TGG | 0.435559 | 8_3:-59841611 | Msa1298910:CDS |
| GATGGAGAAGGTTGAAGAAA+GGG | 0.435831 | 8_3:-59840485 | Msa1298910:CDS |
| TTCTTAGTTTCAGCTGACCT+TGG | 0.437129 | 8_3:+59840408 | None:intergenic |
| GGGGAGATTACACTTGTTGC+CGG | 0.437985 | 8_3:-59841745 | Msa1298910:CDS |
| ACAGGACGTATATACCTTGC+TGG | 0.440780 | 8_3:-59841766 | Msa1298910:CDS |
| TCTGCCAAAATGCTCAGAAA+TGG | 0.441657 | 8_3:+59840987 | None:intergenic |
| AAAGACTCCTTCTTGGATAG+TGG | 0.442694 | 8_3:-59840574 | Msa1298910:CDS |
| AGATGGAGAAGGTTGAAGAA+AGG | 0.445970 | 8_3:-59840486 | Msa1298910:CDS |
| TTTAAATAGTCTAATGAAGC+AGG | 0.448724 | 8_3:+59841127 | None:intergenic |
| GAAGCGTGTGGATCTGATAT+TGG | 0.448770 | 8_3:-59840224 | Msa1298910:CDS |
| CTGAACAGCAAGAGTTGTAT+TGG | 0.448850 | 8_3:+59840043 | None:intergenic |
| TTTAAGAGTTGCAAGTAAAG+TGG | 0.451021 | 8_3:+59843114 | None:intergenic |
| AACTTGTACATGTCATTAAG+AGG | 0.459864 | 8_3:-59840920 | Msa1298910:CDS |
| ATTATGGTTGCTGGAGGTAG+TGG | 0.462206 | 8_3:-59841017 | Msa1298910:CDS |
| GACAGTGTGATTATGGTTGC+TGG | 0.463898 | 8_3:-59841026 | Msa1298910:CDS |
| GGTATACCTGTTGCAATTGA+AGG | 0.469135 | 8_3:-59841160 | Msa1298910:CDS |
| ATTATATATGATTCTACACT+TGG | 0.476217 | 8_3:+59839993 | None:intergenic |
| TATCATGTCATAAAGAGTAT+TGG | 0.480329 | 8_3:+59841219 | None:intergenic |
| GTTAAGTATCACACATGGAT+TGG | 0.480350 | 8_3:-59842247 | Msa1298910:CDS |
| TAGTATGGTTGAAACAGATT+AGG | 0.480827 | 8_3:+59840634 | None:intergenic |
| ATGGACCAGAAAGTCCAGTT+TGG | 0.481479 | 8_3:-59840701 | Msa1298910:CDS |
| TAGGGCCCTTCAATTGCAAC+AGG | 0.481704 | 8_3:+59841154 | None:intergenic |
| TCAGCTGACCTTGGATCAAA+GGG | 0.483472 | 8_3:+59840417 | None:intergenic |
| TTCAGCTGACCTTGGATCAA+AGG | 0.487298 | 8_3:+59840416 | None:intergenic |
| CAACTATATCTCATCTTCAA+TGG | 0.489902 | 8_3:-59841321 | Msa1298910:CDS |
| CTAGTGGTGAACAGTGTAGT+TGG | 0.497615 | 8_3:-59842618 | Msa1298910:CDS |
| TAGGAAAATAAGAAAAGTGA+TGG | 0.497785 | 8_3:+59840653 | None:intergenic |
| TGATTAAATGTCAAGGGTGG+TGG | 0.504355 | 8_3:-59841243 | Msa1298910:CDS |
| TGAATACTTTGCCACGCTGA+AGG | 0.507529 | 8_3:+59843155 | None:intergenic |
| GTTGCAATTGAAGGGCCCTA+TGG | 0.513882 | 8_3:-59841151 | Msa1298910:CDS |
| CACTTCTATATGGTCTTCCC+AGG | 0.515363 | 8_3:-59841601 | Msa1298910:CDS |
| CAGGACGTATATACCTTGCT+GGG | 0.524995 | 8_3:-59841765 | Msa1298910:CDS |
| CCAGTATTTCAAAACTGGAT+AGG | 0.525480 | 8_3:+59842592 | None:intergenic |
| GAATACTTTGCCACGCTGAA+GGG | 0.527827 | 8_3:+59843156 | None:intergenic |
| AAATTAAACCCTTTGATCCA+AGG | 0.534507 | 8_3:-59840425 | Msa1298910:CDS |
| TCAAATATATAACACTTGTA+GGG | 0.536178 | 8_3:+59841350 | None:intergenic |
| GTCTAATGAAGCAGGTCCAT+AGG | 0.538097 | 8_3:+59841135 | None:intergenic |
| AAGCTGGATATCAAAGAAGC+AGG | 0.541585 | 8_3:-59842778 | Msa1298910:intron |
| AACTTTCTTCTTCTAATTTG+GGG | 0.542459 | 8_3:+59841697 | None:intergenic |
| ATGAACTTCATGTTCTTCAA+GGG | 0.543742 | 8_3:+59840383 | None:intergenic |
| TATGTGAACTACATTATTTG+TGG | 0.545711 | 8_3:+59839943 | None:intergenic |
| TGATAGCAATTGTGTTGAGA+TGG | 0.546274 | 8_3:-59840503 | Msa1298910:CDS |
| ACTACACTGTTCACCACTAG+TGG | 0.547544 | 8_3:+59842621 | None:intergenic |
| ACCAGAAAGTCCAGTTTGGA+TGG | 0.547817 | 8_3:-59840697 | Msa1298910:CDS |
| ACCCCAAACAAACAAAGTGC+TGG | 0.548647 | 8_3:+59842189 | None:intergenic |
| ATTTGGAAGTGGCAAAAGAC+AGG | 0.548862 | 8_3:-59841784 | Msa1298910:CDS |
| TCTAATGAAGCAGGTCCATA+GGG | 0.551514 | 8_3:+59841136 | None:intergenic |
| AATTCTAGCTGAAACCATGC+AGG | 0.558194 | 8_3:+59841522 | None:intergenic |
| CGTTCCACAGACATCGCAGA+TGG | 0.560042 | 8_3:-59840448 | Msa1298910:CDS |
| AGTAGATCCACTATCCAAGA+AGG | 0.560330 | 8_3:+59840567 | None:intergenic |
| TTGTTAAACAGATTTGGAAG+TGG | 0.560851 | 8_3:-59841795 | Msa1298910:intron |
| CATTGAAGATGAGATATAGT+TGG | 0.565837 | 8_3:+59841322 | None:intergenic |
| TCACCTCACTTTGTATATGG+TGG | 0.573024 | 8_3:+59842161 | None:intergenic |
| ATTTCCATCTGCGATGTCTG+TGG | 0.573154 | 8_3:+59840444 | None:intergenic |
| AAGAAAGGGATTCCTAAGAA+AGG | 0.575794 | 8_3:-59840471 | Msa1298910:CDS |
| ATACAACTCTTGCTGTTCAG+TGG | 0.579378 | 8_3:-59840040 | Msa1298910:three_prime_UTR |
| TCTTCTAATTTGGGGAAGTG+AGG | 0.582585 | 8_3:+59841705 | None:intergenic |
| GATTCTACACTTGGGAGTGA+AGG | 0.587916 | 8_3:+59840002 | None:intergenic |
| GCCAGCACTTTGTTTGTTTG+GGG | 0.590787 | 8_3:-59842190 | Msa1298910:CDS |
| TTATAAACTGCAGAAGTGGA+AGG | 0.592835 | 8_3:-59842674 | Msa1298910:intron |
| TGGATGGCTGCTATTACTGG+AGG | 0.596455 | 8_3:-59840681 | Msa1298910:CDS |
| GTATACCTGTTGCAATTGAA+GGG | 0.597798 | 8_3:-59841159 | Msa1298910:CDS |
| CAAAGTATTCAAGTCAGAGA+TGG | 0.598654 | 8_3:-59843143 | Msa1298910:exon |
| AGAGAGTGAAGAGTGAAGCA+TGG | 0.598825 | 8_3:+59840104 | None:intergenic |
| ACAAGAAACACAACTAAGCG+TGG | 0.598890 | 8_3:-59840805 | Msa1298910:CDS |
| ATTAGCTCCACAGCTTCACA+GGG | 0.603545 | 8_3:+59841496 | None:intergenic |
| ACTTGTACATGTCATTAAGA+GGG | 0.611165 | 8_3:-59840919 | Msa1298910:CDS |
| GGTAACGAAGATAACAAGGC+CGG | 0.617903 | 8_3:+59841726 | None:intergenic |
| AAAGGTGCTGATAAAAGGAA+AGG | 0.621349 | 8_3:-59841181 | Msa1298910:CDS |
| CTTCAGTTAAGTATCACACA+TGG | 0.622062 | 8_3:-59842252 | Msa1298910:CDS |
| TTATACGCAACAGTTTGTCA+AGG | 0.631011 | 8_3:+59841563 | None:intergenic |
| GTGAGGTAACGAAGATAACA+AGG | 0.631966 | 8_3:+59841722 | None:intergenic |
| CAAGAAACACAACTAAGCGT+GGG | 0.635628 | 8_3:-59840804 | Msa1298910:CDS |
| ACCACATTCAAGGATAAAAG+GGG | 0.637408 | 8_3:+59839900 | None:intergenic |
| TGTCTTCTCAAATCCACTAG+TGG | 0.637702 | 8_3:-59842634 | Msa1298910:CDS |
| TTATATATGATTCTACACTT+GGG | 0.637805 | 8_3:+59839994 | None:intergenic |
| CTGTGATGATTAAATGTCAA+GGG | 0.637969 | 8_3:-59841249 | Msa1298910:CDS |
| CAGCCACCATATACAAAGTG+AGG | 0.647610 | 8_3:-59842164 | Msa1298910:intron |
| CAAGTGTAATCTCCCCAGCA+AGG | 0.650642 | 8_3:+59841752 | None:intergenic |
| TGAGAGCATGAAGGAATCAG+TGG | 0.658286 | 8_3:-59840183 | Msa1298910:CDS |
| ATACAAACTGAATTAAACAA+AGG | 0.659472 | 8_3:-59841199 | Msa1298910:CDS |
| TCTGTGATGATTAAATGTCA+AGG | 0.676323 | 8_3:-59841250 | Msa1298910:CDS |
| ACACTTGGGAGTGAAGGCAA+AGG | 0.686030 | 8_3:+59840008 | None:intergenic |
| TTGTGGTCCTGAGAGCATGA+AGG | 0.688445 | 8_3:-59840192 | Msa1298910:CDS |
| AAATTCAAGAATGAAGCGTG+TGG | 0.689017 | 8_3:-59840236 | Msa1298910:CDS |
| CCACATTCAAGGATAAAAGG+GGG | 0.690410 | 8_3:+59839901 | None:intergenic |
| CAATTGTGTTGAGATGGAGA+AGG | 0.701994 | 8_3:-59840497 | Msa1298910:CDS |
| AGTTTCTTAGAATAGCAACA+AGG | 0.702556 | 8_3:-59842369 | Msa1298910:CDS |
| AGGACGTATATACCTTGCTG+GGG | 0.713855 | 8_3:-59841764 | Msa1298910:CDS |
| AGTGTGATTATGGTTGCTGG+AGG | 0.744527 | 8_3:-59841023 | Msa1298910:CDS |
| TGATGATTAAATGTCAAGGG+TGG | 0.754801 | 8_3:-59841246 | Msa1298910:CDS |
| TTAGCTCCACAGCTTCACAG+GGG | 0.790665 | 8_3:+59841497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTAATTACTTGAA+TGG | - | chr8_3:59840353-59840372 | Msa1298910:intron | 10.0% |
| !! | TAAAAATAACTAAAGAAACA+TGG | + | chr8_3:59841169-59841188 | None:intergenic | 15.0% |
| !! | AAATTAATATTCCATTCAAA+CGG | - | chr8_3:59841674-59841693 | Msa1298910:CDS | 15.0% |
| !!! | TATATATTTTTAGAAATGCA+AGG | + | chr8_3:59842768-59842787 | None:intergenic | 15.0% |
| !!! | AGAGCTAATAATACAATTTT+TGG | - | chr8_3:59840083-59840102 | Msa1298910:exon | 20.0% |
| !!! | AATACAATTTTTGGATACTA+TGG | - | chr8_3:59840092-59840111 | Msa1298910:CDS | 20.0% |
| !! | ATTATAGCAATAGCAATTAT+TGG | + | chr8_3:59840260-59840279 | None:intergenic | 20.0% |
| !!! | ATAATTGCTATTGCTATAAT+TGG | - | chr8_3:59840260-59840279 | Msa1298910:intron | 20.0% |
| !!! | TTCTGCAGTTTATAATTTTA+AGG | + | chr8_3:59840402-59840421 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTATAGTCTTCT+TGG | - | chr8_3:59840516-59840535 | Msa1298910:CDS | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+AGG | + | chr8_3:59840954-59840973 | None:intergenic | 20.0% |
| !!! | TCATATTTGTTAAACAGATT+TGG | - | chr8_3:59841280-59841299 | Msa1298910:CDS | 20.0% |
| !! | AAACTTTCTTCTTCTAATTT+GGG | + | chr8_3:59841388-59841407 | None:intergenic | 20.0% |
| !! | TCAAATATATAACACTTGTA+GGG | + | chr8_3:59841734-59841753 | None:intergenic | 20.0% |
| !! | TTCAAATATATAACACTTGT+AGG | + | chr8_3:59841735-59841754 | None:intergenic | 20.0% |
| !! | ATACAAACTGAATTAAACAA+AGG | - | chr8_3:59841882-59841901 | Msa1298910:intron | 20.0% |
| !!! | TGATGGAAATTTATTTTTGT+TGG | + | chr8_3:59842134-59842153 | None:intergenic | 20.0% |
| !! | ACAAAAATAAATTTCCATCA+AGG | - | chr8_3:59842134-59842153 | Msa1298910:intron | 20.0% |
| !!! | TTGATTTGAACAGATATATT+AGG | - | chr8_3:59842821-59842840 | Msa1298910:CDS | 20.0% |
| !! | TTATATATGATTCTACACTT+GGG | + | chr8_3:59843090-59843109 | None:intergenic | 20.0% |
| !! | ATTATATATGATTCTACACT+TGG | + | chr8_3:59843091-59843110 | None:intergenic | 20.0% |
| !! | TTATTTTCATATTTGCAGCT+TGG | - | chr8_3:59839997-59840016 | Msa1298910:three_prime_UTR | 25.0% |
| !!! | TGCAATAGAGATTTTAGTTT+AGG | + | chr8_3:59840124-59840143 | None:intergenic | 25.0% |
| !! | TATAATTGGACTTCTTTTCT+TGG | - | chr8_3:59840274-59840293 | Msa1298910:intron | 25.0% |
| ! | AAAATTATAAACTGCAGAAG+TGG | - | chr8_3:59840403-59840422 | Msa1298910:CDS | 25.0% |
| !!! | CATCAACTTTTTGAAATCAT+TGG | + | chr8_3:59840566-59840585 | None:intergenic | 25.0% |
| ! | GATTTAGACATACTTTAAGT+TGG | - | chr8_3:59840625-59840644 | Msa1298910:CDS | 25.0% |
| ! | CATCATAATTTACTTTCAGA+TGG | - | chr8_3:59840682-59840701 | Msa1298910:CDS | 25.0% |
| !!! | TTCTTCTTCCAATTTTAAGA+GGG | - | chr8_3:59840769-59840788 | Msa1298910:CDS | 25.0% |
| ! | TCAAATAAGTTAATACGAAC+TGG | - | chr8_3:59841137-59841156 | Msa1298910:CDS | 25.0% |
| ! | TAACTAAAGAAACATGGTTA+GGG | + | chr8_3:59841163-59841182 | None:intergenic | 25.0% |
| ! | ATAACTAAAGAAACATGGTT+AGG | + | chr8_3:59841164-59841183 | None:intergenic | 25.0% |
| ! | AACTTTCTTCTTCTAATTTG+GGG | + | chr8_3:59841387-59841406 | None:intergenic | 25.0% |
| ! | CAAACTTTCTTCTTCTAATT+TGG | + | chr8_3:59841389-59841408 | None:intergenic | 25.0% |
| !!! | TATTTTTCTTGTTTCATGCT+GGG | - | chr8_3:59841451-59841470 | Msa1298910:intron | 25.0% |
| ! | AATTTAGTACTTGGATCTTT+AGG | + | chr8_3:59841615-59841634 | None:intergenic | 25.0% |
| ! | CTGTACATAAATTTAGTACT+TGG | + | chr8_3:59841624-59841643 | None:intergenic | 25.0% |
| !! | TATCATGTCATAAAGAGTAT+TGG | + | chr8_3:59841865-59841884 | None:intergenic | 25.0% |
| ! | TTTAAATAGTCTAATGAAGC+AGG | + | chr8_3:59841957-59841976 | None:intergenic | 25.0% |
| !! | AATGAAATTTTTCGCTTGAT+CGG | + | chr8_3:59842234-59842253 | None:intergenic | 25.0% |
| ! | TAGGAAAATAAGAAAAGTGA+TGG | + | chr8_3:59842431-59842450 | None:intergenic | 25.0% |
| !!! | ATGGAATTACCTTTAAAGTT+AGG | + | chr8_3:59842736-59842755 | None:intergenic | 25.0% |
| ! | ACACTTTAGTAGTCTAAATT+TGG | - | chr8_3:59843007-59843026 | Msa1298910:CDS | 25.0% |
| ! | TATGTGAACTACATTATTTG+TGG | + | chr8_3:59843141-59843160 | None:intergenic | 25.0% |
| !! | AAACTTTTAAACCACATTCA+AGG | + | chr8_3:59843194-59843213 | None:intergenic | 25.0% |
| TTTAAGAGTTGCAAGTAAAG+TGG | + | chr8_3:59839970-59839989 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTCCATACTTGAGT+TGG | + | chr8_3:59840044-59840063 | None:intergenic | 30.0% |
| CTCAAGTATGGACAAAAAAA+TGG | - | chr8_3:59840045-59840064 | Msa1298910:three_prime_UTR | 30.0% | |
| CTAAATATTAAGTCTTCTGC+AGG | - | chr8_3:59840209-59840228 | Msa1298910:CDS | 30.0% | |
| AACTACCAGTATTTCAAAAC+TGG | + | chr8_3:59840497-59840516 | None:intergenic | 30.0% | |
| ! | TTTTTATAGTCTTCTTGGCA+TGG | - | chr8_3:59840521-59840540 | Msa1298910:CDS | 30.0% |
| ATTGAACATGTAAGTGTTTC+TGG | - | chr8_3:59840603-59840622 | Msa1298910:CDS | 30.0% | |
| !! | CATACTTTAAGTTGGATGAT+AGG | - | chr8_3:59840633-59840652 | Msa1298910:CDS | 30.0% |
| AGTTTCTTAGAATAGCAACA+AGG | - | chr8_3:59840712-59840731 | Msa1298910:CDS | 30.0% | |
| ! | CTTCTTCTTCCAATTTTAAG+AGG | - | chr8_3:59840768-59840787 | Msa1298910:CDS | 30.0% |
| TTGGCTGTATTTCGTATATT+TGG | - | chr8_3:59840792-59840811 | Msa1298910:CDS | 30.0% | |
| ! | ATACTTTTCGCTACAATACA+TGG | - | chr8_3:59840867-59840886 | Msa1298910:CDS | 30.0% |
| ATAAGCTGTTAATCTCTTCA+GGG | + | chr8_3:59841097-59841116 | None:intergenic | 30.0% | |
| TTGTTAAACAGATTTGGAAG+TGG | - | chr8_3:59841286-59841305 | Msa1298910:CDS | 30.0% | |
| !! | GTATTTTTCTTGTTTCATGC+TGG | - | chr8_3:59841450-59841469 | Msa1298910:intron | 30.0% |
| !! | ATTTTTCTTGTTTCATGCTG+GGG | - | chr8_3:59841452-59841471 | Msa1298910:intron | 30.0% |
| ! | TGTATTTTCGATCATTTGCA+GGG | - | chr8_3:59841697-59841716 | Msa1298910:CDS | 30.0% |
| CATTGAAGATGAGATATAGT+TGG | + | chr8_3:59841762-59841781 | None:intergenic | 30.0% | |
| CAACTATATCTCATCTTCAA+TGG | - | chr8_3:59841760-59841779 | Msa1298910:CDS | 30.0% | |
| TCTGTGATGATTAAATGTCA+AGG | - | chr8_3:59841831-59841850 | Msa1298910:intron | 30.0% | |
| CTGTGATGATTAAATGTCAA+GGG | - | chr8_3:59841832-59841851 | Msa1298910:intron | 30.0% | |
| !! | TAAACAAAGGTGCTGATAAA+AGG | - | chr8_3:59841895-59841914 | Msa1298910:intron | 30.0% |
| AACTTGTACATGTCATTAAG+AGG | - | chr8_3:59842161-59842180 | Msa1298910:intron | 30.0% | |
| ACTTGTACATGTCATTAAGA+GGG | - | chr8_3:59842162-59842181 | Msa1298910:intron | 30.0% | |
| GAAAGTAAAAACACTGCAAT+TGG | - | chr8_3:59842327-59842346 | Msa1298910:CDS | 30.0% | |
| TCCAATTATTATGCAGCATA+TGG | - | chr8_3:59842361-59842380 | Msa1298910:CDS | 30.0% | |
| TCCATATGCTGCATAATAAT+TGG | + | chr8_3:59842365-59842384 | None:intergenic | 30.0% | |
| TAGTATGGTTGAAACAGATT+AGG | + | chr8_3:59842450-59842469 | None:intergenic | 30.0% | |
| TTTCAGATGGAACTATAGTA+TGG | + | chr8_3:59842465-59842484 | None:intergenic | 30.0% | |
| !! | AATTTGGAATGCTTTTCAGA+TGG | + | chr8_3:59842478-59842497 | None:intergenic | 30.0% |
| ! | AGTCTTTTCTTTGGACAATT+TGG | + | chr8_3:59842494-59842513 | None:intergenic | 30.0% |
| AAATTAAACCCTTTGATCCA+AGG | - | chr8_3:59842656-59842675 | Msa1298910:CDS | 30.0% | |
| ATGAACTTCATGTTCTTCAA+GGG | + | chr8_3:59842701-59842720 | None:intergenic | 30.0% | |
| AATGAACTTCATGTTCTTCA+AGG | + | chr8_3:59842702-59842721 | None:intergenic | 30.0% | |
| ! | GAAGAACATGAAGTTCATTT+TGG | - | chr8_3:59842703-59842722 | Msa1298910:intron | 30.0% |
| ! | CAAGAGTTGTATTGGTATTT+AGG | + | chr8_3:59843033-59843052 | None:intergenic | 30.0% |
| AACCACATTCAAGGATAAAA+GGG | + | chr8_3:59843185-59843204 | None:intergenic | 30.0% | |
| AAACCACATTCAAGGATAAA+AGG | + | chr8_3:59843186-59843205 | None:intergenic | 30.0% | |
| ! | CAAAGTATTCAAGTCAGAGA+TGG | - | chr8_3:59839938-59839957 | Msa1298910:three_prime_UTR | 35.0% |
| !!! | TTTTGAAGCCAACTCAAGTA+TGG | - | chr8_3:59840033-59840052 | Msa1298910:three_prime_UTR | 35.0% |
| TTATAAACTGCAGAAGTGGA+AGG | - | chr8_3:59840407-59840426 | Msa1298910:CDS | 35.0% | |
| CCAGTATTTCAAAACTGGAT+AGG | + | chr8_3:59840492-59840511 | None:intergenic | 35.0% | |
| !!! | CCTATCCAGTTTTGAAATAC+TGG | - | chr8_3:59840489-59840508 | Msa1298910:CDS | 35.0% |
| CTTAGAATAGCAACAAGGTT+TGG | - | chr8_3:59840717-59840736 | Msa1298910:CDS | 35.0% | |
| ! | TTTGTTAGCAGAAGCTTGTT+TGG | - | chr8_3:59840740-59840759 | Msa1298910:CDS | 35.0% |
| !! | TCTTCCAATTTTAAGAGGGT+TGG | - | chr8_3:59840773-59840792 | Msa1298910:CDS | 35.0% |
| CTTCAGTTAAGTATCACACA+TGG | - | chr8_3:59840829-59840848 | Msa1298910:CDS | 35.0% | |
| GTTAAGTATCACACATGGAT+TGG | - | chr8_3:59840834-59840853 | Msa1298910:CDS | 35.0% | |
| CATAAGCTGTTAATCTCTTC+AGG | + | chr8_3:59841098-59841117 | None:intergenic | 35.0% | |
| ACAGTTTGTCAAGGCTAAAA+AGG | + | chr8_3:59841512-59841531 | None:intergenic | 35.0% | |
| TTATACGCAACAGTTTGTCA+AGG | + | chr8_3:59841521-59841540 | None:intergenic | 35.0% | |
| TCGAAAATACACCGTTTGAA+TGG | + | chr8_3:59841688-59841707 | None:intergenic | 35.0% | |
| ! | GTGTATTTTCGATCATTTGC+AGG | - | chr8_3:59841696-59841715 | Msa1298910:CDS | 35.0% |
| TGATGATTAAATGTCAAGGG+TGG | - | chr8_3:59841835-59841854 | Msa1298910:intron | 35.0% | |
| !! | AAAGGTGCTGATAAAAGGAA+AGG | - | chr8_3:59841900-59841919 | Msa1298910:intron | 35.0% |
| GTATACCTGTTGCAATTGAA+GGG | - | chr8_3:59841922-59841941 | Msa1298910:intron | 35.0% | |
| ! | AACTCCATTTCTGAGCATTT+TGG | - | chr8_3:59842090-59842109 | Msa1298910:intron | 35.0% |
| TGTACAAGTTGTATCCTTGA+TGG | + | chr8_3:59842151-59842170 | None:intergenic | 35.0% | |
| TGATAGCAATTGTGTTGAGA+TGG | - | chr8_3:59842578-59842597 | Msa1298910:CDS | 35.0% | |
| AAGAAAGGGATTCCTAAGAA+AGG | - | chr8_3:59842610-59842629 | Msa1298910:CDS | 35.0% | |
| ! | GAACATGAAGTTCATTTTGG+AGG | - | chr8_3:59842706-59842725 | Msa1298910:intron | 35.0% |
| AAATGCAAGGAAAGAGACAA+TGG | + | chr8_3:59842755-59842774 | None:intergenic | 35.0% | |
| AAATTCAAGAATGAAGCGTG+TGG | - | chr8_3:59842845-59842864 | Msa1298910:CDS | 35.0% | |
| ! | TGGATCTGATATTGGAGTTT+TGG | - | chr8_3:59842865-59842884 | Msa1298910:intron | 35.0% |
| !!! | GATATTGGAGTTTTGGTTTG+TGG | - | chr8_3:59842872-59842891 | Msa1298910:intron | 35.0% |
| ! | GAATCTGAGTGTTTGAAGTT+AGG | - | chr8_3:59842938-59842957 | Msa1298910:intron | 35.0% |
| ACCACATTCAAGGATAAAAG+GGG | + | chr8_3:59843184-59843203 | None:intergenic | 35.0% | |
| AAAAATTAGACCCTTCAGCG+TGG | - | chr8_3:59839915-59839934 | Msa1298910:three_prime_UTR | 40.0% | |
| TTGCAGCTTGGATTTCTCTT+TGG | - | chr8_3:59840009-59840028 | Msa1298910:three_prime_UTR | 40.0% | |
| ! | CTTTTCTTGGACTCAAAAGC+TGG | - | chr8_3:59840287-59840306 | Msa1298910:intron | 40.0% |
| AAGCTGGATATCAAAGAAGC+AGG | - | chr8_3:59840303-59840322 | Msa1298910:intron | 40.0% | |
| TGTCTTCTCAAATCCACTAG+TGG | - | chr8_3:59840447-59840466 | Msa1298910:CDS | 40.0% | |
| ACAGCCAACCCTCTTAAAAT+TGG | + | chr8_3:59840780-59840799 | None:intergenic | 40.0% | |
| TCACCTCACTTTGTATATGG+TGG | + | chr8_3:59840923-59840942 | None:intergenic | 40.0% | |
| ACCATATACAAAGTGAGGTG+AGG | - | chr8_3:59840922-59840941 | Msa1298910:CDS | 40.0% | |
| ACCTCACCTCACTTTGTATA+TGG | + | chr8_3:59840926-59840945 | None:intergenic | 40.0% | |
| GGTGAGGTCTATTCCTTATT+TGG | - | chr8_3:59840938-59840957 | Msa1298910:CDS | 40.0% | |
| ATTTGGAAGTGGCAAAAGAC+AGG | - | chr8_3:59841297-59841316 | Msa1298910:CDS | 40.0% | |
| GTGAGGTAACGAAGATAACA+AGG | + | chr8_3:59841362-59841381 | None:intergenic | 40.0% | |
| TCTTCTAATTTGGGGAAGTG+AGG | + | chr8_3:59841379-59841398 | None:intergenic | 40.0% | |
| TGGGGATAAGCACTTCTATA+TGG | - | chr8_3:59841470-59841489 | Msa1298910:intron | 40.0% | |
| ATCAAGTCCAAAAACCTGCA+TGG | - | chr8_3:59841545-59841564 | Msa1298910:CDS | 40.0% | |
| ! | AATTCTAGCTGAAACCATGC+AGG | + | chr8_3:59841562-59841581 | None:intergenic | 40.0% |
| CATGATGTTCTCATCAGCTT+TGG | + | chr8_3:59841811-59841830 | None:intergenic | 40.0% | |
| TGATTAAATGTCAAGGGTGG+TGG | - | chr8_3:59841838-59841857 | Msa1298910:intron | 40.0% | |
| GGTATACCTGTTGCAATTGA+AGG | - | chr8_3:59841921-59841940 | Msa1298910:intron | 40.0% | |
| TCTAATGAAGCAGGTCCATA+GGG | + | chr8_3:59841948-59841967 | None:intergenic | 40.0% | |
| CAGACATGACAGTGTGATTA+TGG | - | chr8_3:59842048-59842067 | Msa1298910:intron | 40.0% | |
| TCTGCCAAAATGCTCAGAAA+TGG | + | chr8_3:59842097-59842116 | None:intergenic | 40.0% | |
| ACAAGAAACACAACTAAGCG+TGG | - | chr8_3:59842276-59842295 | Msa1298910:CDS | 40.0% | |
| CAAGAAACACAACTAAGCGT+GGG | - | chr8_3:59842277-59842296 | Msa1298910:CDS | 40.0% | |
| ACAACTAAGCGTGGGAATTA+CGG | - | chr8_3:59842285-59842304 | Msa1298910:CDS | 40.0% | |
| ! | CCAAGAAGGAGTCTTTTCTT+TGG | + | chr8_3:59842503-59842522 | None:intergenic | 40.0% |
| CCAAAGAAAAGACTCCTTCT+TGG | - | chr8_3:59842500-59842519 | Msa1298910:CDS | 40.0% | |
| AAAGACTCCTTCTTGGATAG+TGG | - | chr8_3:59842507-59842526 | Msa1298910:CDS | 40.0% | |
| AGTAGATCCACTATCCAAGA+AGG | + | chr8_3:59842517-59842536 | None:intergenic | 40.0% | |
| CAATTGTGTTGAGATGGAGA+AGG | - | chr8_3:59842584-59842603 | Msa1298910:CDS | 40.0% | |
| AGATGGAGAAGGTTGAAGAA+AGG | - | chr8_3:59842595-59842614 | Msa1298910:CDS | 40.0% | |
| GATGGAGAAGGTTGAAGAAA+GGG | - | chr8_3:59842596-59842615 | Msa1298910:CDS | 40.0% | |
| TTCTTAGTTTCAGCTGACCT+TGG | + | chr8_3:59842676-59842695 | None:intergenic | 40.0% | |
| !! | ATGAAGTTCATTTTGGAGGC+AGG | - | chr8_3:59842710-59842729 | Msa1298910:intron | 40.0% |
| CTGAACAGCAAGAGTTGTAT+TGG | + | chr8_3:59843041-59843060 | None:intergenic | 40.0% | |
| !! | ATACAACTCTTGCTGTTCAG+TGG | - | chr8_3:59843041-59843060 | Msa1298910:CDS | 40.0% |
| CTACATTATTTGTGGTGCTC+TGG | + | chr8_3:59843133-59843152 | None:intergenic | 40.0% | |
| CCACATTCAAGGATAAAAGG+GGG | + | chr8_3:59843183-59843202 | None:intergenic | 40.0% | |
| GAATACTTTGCCACGCTGAA+GGG | + | chr8_3:59839928-59839947 | None:intergenic | 45.0% | |
| TGAATACTTTGCCACGCTGA+AGG | + | chr8_3:59839929-59839948 | None:intergenic | 45.0% | |
| ACTACACTGTTCACCACTAG+TGG | + | chr8_3:59840463-59840482 | None:intergenic | 45.0% | |
| CTAGTGGTGAACAGTGTAGT+TGG | - | chr8_3:59840463-59840482 | Msa1298910:CDS | 45.0% | |
| ! | CGCCAGCACTTTGTTTGTTT+GGG | - | chr8_3:59840890-59840909 | Msa1298910:CDS | 45.0% |
| ! | GCCAGCACTTTGTTTGTTTG+GGG | - | chr8_3:59840891-59840910 | Msa1298910:CDS | 45.0% |
| ACCCCAAACAAACAAAGTGC+TGG | + | chr8_3:59840895-59840914 | None:intergenic | 45.0% | |
| CAGCCACCATATACAAAGTG+AGG | - | chr8_3:59840917-59840936 | Msa1298910:CDS | 45.0% | |
| ACAGGACGTATATACCTTGC+TGG | - | chr8_3:59841315-59841334 | Msa1298910:CDS | 45.0% | |
| CAGGACGTATATACCTTGCT+GGG | - | chr8_3:59841316-59841335 | Msa1298910:CDS | 45.0% | |
| AGGACGTATATACCTTGCTG+GGG | - | chr8_3:59841317-59841336 | Msa1298910:CDS | 45.0% | |
| GGTAACGAAGATAACAAGGC+CGG | + | chr8_3:59841358-59841377 | None:intergenic | 45.0% | |
| CACTTCTATATGGTCTTCCC+AGG | - | chr8_3:59841480-59841499 | Msa1298910:CDS | 45.0% | |
| GGCTAAAAAGGAACACTCCT+GGG | + | chr8_3:59841500-59841519 | None:intergenic | 45.0% | |
| AGGCTAAAAAGGAACACTCC+TGG | + | chr8_3:59841501-59841520 | None:intergenic | 45.0% | |
| ! | GCTGAAACCATGCAGGTTTT+TGG | + | chr8_3:59841555-59841574 | None:intergenic | 45.0% |
| ! | AATTTTCCCCTGTGAAGCTG+TGG | - | chr8_3:59841578-59841597 | Msa1298910:CDS | 45.0% |
| ATTAGCTCCACAGCTTCACA+GGG | + | chr8_3:59841588-59841607 | None:intergenic | 45.0% | |
| AATTAGCTCCACAGCTTCAC+AGG | + | chr8_3:59841589-59841608 | None:intergenic | 45.0% | |
| GTCTAATGAAGCAGGTCCAT+AGG | + | chr8_3:59841949-59841968 | None:intergenic | 45.0% | |
| GACAGTGTGATTATGGTTGC+TGG | - | chr8_3:59842055-59842074 | Msa1298910:intron | 45.0% | |
| AGTGTGATTATGGTTGCTGG+AGG | - | chr8_3:59842058-59842077 | Msa1298910:intron | 45.0% | |
| ATTATGGTTGCTGGAGGTAG+TGG | - | chr8_3:59842064-59842083 | Msa1298910:intron | 45.0% | |
| ATGGACCAGAAAGTCCAGTT+TGG | - | chr8_3:59842380-59842399 | Msa1298910:CDS | 45.0% | |
| ACCAGAAAGTCCAGTTTGGA+TGG | - | chr8_3:59842384-59842403 | Msa1298910:intron | 45.0% | |
| GTAATAGCAGCCATCCAAAC+TGG | + | chr8_3:59842397-59842416 | None:intergenic | 45.0% | |
| GTTTGGATGGCTGCTATTAC+TGG | - | chr8_3:59842397-59842416 | Msa1298910:intron | 45.0% | |
| ATTTCCATCTGCGATGTCTG+TGG | + | chr8_3:59842640-59842659 | None:intergenic | 45.0% | |
| TCAGCTGACCTTGGATCAAA+GGG | + | chr8_3:59842667-59842686 | None:intergenic | 45.0% | |
| TTCAGCTGACCTTGGATCAA+AGG | + | chr8_3:59842668-59842687 | None:intergenic | 45.0% | |
| GAAGCGTGTGGATCTGATAT+TGG | - | chr8_3:59842857-59842876 | Msa1298910:intron | 45.0% | |
| ! | ACTGATTCCTTCATGCTCTC+AGG | + | chr8_3:59842899-59842918 | None:intergenic | 45.0% |
| ! | TGAGAGCATGAAGGAATCAG+TGG | - | chr8_3:59842898-59842917 | Msa1298910:intron | 45.0% |
| AGAGAGTGAAGAGTGAAGCA+TGG | + | chr8_3:59842980-59842999 | None:intergenic | 45.0% | |
| GATTCTACACTTGGGAGTGA+AGG | + | chr8_3:59843082-59843101 | None:intergenic | 45.0% | |
| CATTCAAGGATAAAAGGGGG+AGG | + | chr8_3:59843180-59843199 | None:intergenic | 45.0% | |
| ! | CCCCCTTTTATCCTTGAATG+TGG | - | chr8_3:59843180-59843199 | Msa1298910:five_prime_UTR | 45.0% |
| TGCAGAAGTGGAAGGAGTTC+AGG | - | chr8_3:59840415-59840434 | Msa1298910:CDS | 50.0% | |
| ! | GCGCCAGCACTTTGTTTGTT+TGG | - | chr8_3:59840889-59840908 | Msa1298910:CDS | 50.0% |
| CAAGTGTAATCTCCCCAGCA+AGG | + | chr8_3:59841332-59841351 | None:intergenic | 50.0% | |
| ! | GGGGAGATTACACTTGTTGC+CGG | - | chr8_3:59841336-59841355 | Msa1298910:CDS | 50.0% |
| TTAGCTCCACAGCTTCACAG+GGG | + | chr8_3:59841587-59841606 | None:intergenic | 50.0% | |
| TAGGGCCCTTCAATTGCAAC+AGG | + | chr8_3:59841930-59841949 | None:intergenic | 50.0% | |
| GTTGCAATTGAAGGGCCCTA+TGG | - | chr8_3:59841930-59841949 | Msa1298910:intron | 50.0% | |
| GCCATCCAAACTGGACTTTC+TGG | + | chr8_3:59842388-59842407 | None:intergenic | 50.0% | |
| TGGATGGCTGCTATTACTGG+AGG | - | chr8_3:59842400-59842419 | Msa1298910:intron | 50.0% | |
| GTCTGTGGAACGCCTTTCTT+AGG | + | chr8_3:59842625-59842644 | None:intergenic | 50.0% | |
| GGAGGCAGGCCTAACTTTAA+AGG | - | chr8_3:59842724-59842743 | Msa1298910:intron | 50.0% | |
| ! | TTGTGGTCCTGAGAGCATGA+AGG | - | chr8_3:59842889-59842908 | Msa1298910:intron | 50.0% |
| ACACTTGGGAGTGAAGGCAA+AGG | + | chr8_3:59843076-59843095 | None:intergenic | 50.0% | |
| CGTTCCACAGACATCGCAGA+TGG | - | chr8_3:59842633-59842652 | Msa1298910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 59839888 | 59843215 | 59839888 | ID=Msa1298910;Name=Msa1298910 |
| chr8_3 | mRNA | 59839888 | 59843215 | 59839888 | ID=Msa1298910-mRNA-1;Parent=Msa1298910;Name=Msa1298910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=69|1|1|1|1|1|8|200|714 |
| chr8_3 | exon | 59839888 | 59840269 | 59839888 | ID=Msa1298910-mRNA-1:exon:17368;Parent=Msa1298910-mRNA-1 |
| chr8_3 | exon | 59840358 | 59841052 | 59840358 | ID=Msa1298910-mRNA-1:exon:17367;Parent=Msa1298910-mRNA-1 |
| chr8_3 | exon | 59841127 | 59841385 | 59841127 | ID=Msa1298910-mRNA-1:exon:17366;Parent=Msa1298910-mRNA-1 |
| chr8_3 | exon | 59841479 | 59841806 | 59841479 | ID=Msa1298910-mRNA-1:exon:17365;Parent=Msa1298910-mRNA-1 |
| chr8_3 | exon | 59842165 | 59842402 | 59842165 | ID=Msa1298910-mRNA-1:exon:17364;Parent=Msa1298910-mRNA-1 |
| chr8_3 | exon | 59842492 | 59842683 | 59842492 | ID=Msa1298910-mRNA-1:exon:17363;Parent=Msa1298910-mRNA-1 |
| chr8_3 | exon | 59842779 | 59842872 | 59842779 | ID=Msa1298910-mRNA-1:exon:17362;Parent=Msa1298910-mRNA-1 |
| chr8_3 | exon | 59842990 | 59843215 | 59842990 | ID=Msa1298910-mRNA-1:exon:17361;Parent=Msa1298910-mRNA-1 |
| chr8_3 | five_prime_UTR | 59843147 | 59843215 | 59843147 | ID=Msa1298910-mRNA-1:five_prime_utr;Parent=Msa1298910-mRNA-1 |
| chr8_3 | CDS | 59842990 | 59843146 | 59842990 | ID=Msa1298910-mRNA-1:cds;Parent=Msa1298910-mRNA-1 |
| chr8_3 | CDS | 59842779 | 59842872 | 59842779 | ID=Msa1298910-mRNA-1:cds;Parent=Msa1298910-mRNA-1 |
| chr8_3 | CDS | 59842492 | 59842683 | 59842492 | ID=Msa1298910-mRNA-1:cds;Parent=Msa1298910-mRNA-1 |
| chr8_3 | CDS | 59842165 | 59842402 | 59842165 | ID=Msa1298910-mRNA-1:cds;Parent=Msa1298910-mRNA-1 |
| chr8_3 | CDS | 59841479 | 59841806 | 59841479 | ID=Msa1298910-mRNA-1:cds;Parent=Msa1298910-mRNA-1 |
| chr8_3 | CDS | 59841127 | 59841385 | 59841127 | ID=Msa1298910-mRNA-1:cds;Parent=Msa1298910-mRNA-1 |
| chr8_3 | CDS | 59840358 | 59841052 | 59840358 | ID=Msa1298910-mRNA-1:cds;Parent=Msa1298910-mRNA-1 |
| chr8_3 | CDS | 59840088 | 59840269 | 59840088 | ID=Msa1298910-mRNA-1:cds;Parent=Msa1298910-mRNA-1 |
| chr8_3 | three_prime_UTR | 59839888 | 59840087 | 59839888 | ID=Msa1298910-mRNA-1:three_prime_utr;Parent=Msa1298910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
