Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158940 | XP_013467378.1 | 94.776 | 268 | 14 | 0 | 1 | 268 | 1 | 268 | 3.55e-163 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158940 | sp|Q69XV0|BZP50_ORYSJ | 49.080 | 163 | 74 | 3 | 103 | 264 | 139 | 293 | 5.47e-38 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158940 | A0A072VTK0 | 94.776 | 268 | 14 | 0 | 1 | 268 | 1 | 268 | 1.70e-163 | 463 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0158940 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095360 | Msa0158940 | 0.808254 | 3.389950e-50 | -8.615850e-47 |
| Msa0095770 | Msa0158940 | 0.807107 | 5.941694e-50 | -8.615850e-47 |
| Msa0103790 | Msa0158940 | 0.812820 | 3.498356e-51 | -8.615850e-47 |
| Msa0150260 | Msa0158940 | 0.819599 | 1.067124e-52 | -8.615850e-47 |
| Msa0158940 | Msa0257490 | 0.803201 | 3.903012e-49 | -8.615850e-47 |
| Msa0158940 | Msa0296790 | 0.812969 | 3.243604e-51 | -8.615850e-47 |
| Msa0158940 | Msa0482040 | 0.818318 | 2.086420e-52 | -8.615850e-47 |
| Msa0158940 | Msa0482940 | 0.802098 | 6.591898e-49 | -8.615850e-47 |
| Msa0158940 | Msa0600450 | 0.813872 | 2.053782e-51 | -8.615850e-47 |
| Msa0158940 | Msa0640940 | 0.810906 | 9.129169e-51 | -8.615850e-47 |
| Msa0158940 | Msa0679360 | 0.822898 | 1.851751e-53 | -8.615850e-47 |
| Msa0158940 | Msa0705090 | 0.822131 | 2.791621e-53 | -8.615850e-47 |
| Msa0158940 | Msa0743530 | 0.813192 | 2.898228e-51 | -8.615850e-47 |
| Msa0158940 | Msa0746170 | 0.813263 | 2.796721e-51 | -8.615850e-47 |
| Msa0158940 | Msa0746210 | 0.811746 | 5.999307e-51 | -8.615850e-47 |
| Msa0158940 | Msa0822170 | 0.823578 | 1.284652e-53 | -8.615850e-47 |
| Msa0158940 | Msa0974950 | 0.804864 | 1.760687e-49 | -8.615850e-47 |
| Msa0158940 | Msa1037520 | 0.808332 | 3.262472e-50 | -8.615850e-47 |
| Msa0158940 | Msa1075970 | 0.813224 | 2.852470e-51 | -8.615850e-47 |
| Msa0158940 | Msa1131490 | 0.809296 | 2.030112e-50 | -8.615850e-47 |
| Msa0158940 | Msa1206650 | 0.818704 | 1.706201e-52 | -8.615850e-47 |
| Msa0158940 | Msa1297530 | 0.804842 | 1.778917e-49 | -8.615850e-47 |
| Msa0158940 | Msa1370590 | 0.805836 | 1.101393e-49 | -8.615850e-47 |
| Msa0158940 | Msa1384100 | 0.803157 | 3.985856e-49 | -8.615850e-47 |
| Msa0158940 | Msa1444120 | 0.807905 | 4.022277e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158940 | MtrunA17_Chr1g0171291 | 94.776 | 268 | 14 | 0 | 1 | 268 | 1 | 268 | 3.27e-167 | 463 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158940 | AT1G42990.1 | 29.333 | 300 | 147 | 10 | 6 | 268 | 22 | 293 | 9.35e-15 | 73.2 |
Find 84 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTTCCCTGCTATGGTTCC+TGG | 0.201475 | 1_4:+28913507 | Msa0158940:CDS |
| ATCATCTTCTTCATAATTTC+TGG | 0.225113 | 1_4:+28911437 | Msa0158940:five_prime_UTR |
| CTAAGAAGGGTGGCTCTAAA+AGG | 0.288472 | 1_4:+28913613 | Msa0158940:CDS |
| CAAACATGTTGGGATGCTTT+TGG | 0.296968 | 1_4:+28913898 | Msa0158940:three_prime_UTR |
| TTCTTCCTATTTGAAACATA+TGG | 0.336637 | 1_4:+28913964 | Msa0158940:three_prime_UTR |
| CAAAAGCATCCCAACATGTT+TGG | 0.338640 | 1_4:-28913897 | None:intergenic |
| GGAGTCTGCTGTGCTCTTGT+TGG | 0.367032 | 1_4:+28912224 | Msa0158940:CDS |
| TGATCATCCGATTGAGGGAT+TGG | 0.372571 | 1_4:-28911687 | None:intergenic |
| AACTTCCATATGTTTCAAAT+AGG | 0.377154 | 1_4:-28913969 | None:intergenic |
| GGAACCTCTTGAGGAGTTAC+TGG | 0.381189 | 1_4:-28911744 | None:intergenic |
| TCTGGGTAGCATGGACGCTT+TGG | 0.394719 | 1_4:+28911455 | Msa0158940:exon |
| TTGCAATCGCGTGGTGGCTT+TGG | 0.414223 | 1_4:+28912183 | Msa0158940:CDS |
| TGCTGTTGGGTTCCCTGCTA+TGG | 0.415075 | 1_4:+28913500 | Msa0158940:CDS |
| TCATCTTCTTCATAATTTCT+GGG | 0.417142 | 1_4:+28911438 | Msa0158940:five_prime_UTR |
| TTTGCAGAATCCCTGCTGTT+GGG | 0.426943 | 1_4:+28913487 | Msa0158940:intron |
| TCGTTCCTTCTGATGAAGCC+AGG | 0.435960 | 1_4:+28911715 | Msa0158940:CDS |
| GGTTCCCTGCTATGGTTCCT+GGG | 0.440801 | 1_4:+28913508 | Msa0158940:CDS |
| GAGTCTGCTGTGCTCTTGTT+GGG | 0.447976 | 1_4:+28912225 | Msa0158940:CDS |
| TCATCTTCGTTCTTGAAGCT+TGG | 0.448828 | 1_4:-28913699 | None:intergenic |
| AGAGATTCGAAATCGATTTG+AGG | 0.455287 | 1_4:-28911480 | None:intergenic |
| TGATGCCCAGGAACCATAGC+AGG | 0.462353 | 1_4:-28913513 | None:intergenic |
| AACCTTGATCATCCGATTGA+GGG | 0.476612 | 1_4:-28911692 | None:intergenic |
| CCTCGACCCAATCCCTCAAT+CGG | 0.479515 | 1_4:+28911680 | Msa0158940:CDS |
| TTCATAATTTCTGGGTAGCA+TGG | 0.484231 | 1_4:+28911446 | Msa0158940:exon |
| TGGCGTTGATTGTGTTGTCT+TGG | 0.484926 | 1_4:-28911339 | None:intergenic |
| AAAGAAAATGCAAAGAAAGA+AGG | 0.485287 | 1_4:-28913783 | None:intergenic |
| TCTTTACAAACGATTGAGTC+AGG | 0.488376 | 1_4:-28913666 | None:intergenic |
| ATATGTAAACCAAACATGTT+GGG | 0.490186 | 1_4:+28913888 | Msa0158940:three_prime_UTR |
| TGAAGGGGAATGCAGAAGAC+TGG | 0.491226 | 1_4:+28912110 | Msa0158940:CDS |
| TGGAATTGCGTCGTCATCAT+CGG | 0.494775 | 1_4:+28911623 | Msa0158940:CDS |
| GATCATCCGATTGAGGGATT+GGG | 0.498027 | 1_4:-28911686 | None:intergenic |
| TCTCTGAGAGAGGGGAGGGA+GGG | 0.498559 | 1_4:-28911572 | None:intergenic |
| AGCAGACTCCTGCATGGTCA+TGG | 0.499805 | 1_4:-28912211 | None:intergenic |
| AATATGTAAACCAAACATGT+TGG | 0.501452 | 1_4:+28913887 | Msa0158940:three_prime_UTR |
| AAACCTTGATCATCCGATTG+AGG | 0.512112 | 1_4:-28911693 | None:intergenic |
| CTGTTGTTAGCCACAGTGGA+AGG | 0.514860 | 1_4:-28913555 | None:intergenic |
| TGGAACACAAAGGTCTAAGA+AGG | 0.519321 | 1_4:+28913599 | Msa0158940:CDS |
| ATCTCTGAGAGAGGGGAGGG+AGG | 0.519796 | 1_4:-28911573 | None:intergenic |
| CCGATTGAGGGATTGGGTCG+AGG | 0.520843 | 1_4:-28911680 | None:intergenic |
| TGGTGCTCCCATGACCATGC+AGG | 0.523079 | 1_4:+28912203 | Msa0158940:CDS |
| AGGGGAGGGAGGGTCTGCGA+CGG | 0.540634 | 1_4:-28911562 | None:intergenic |
| GATTCTCAATCTCTGAGAGA+GGG | 0.544535 | 1_4:-28911581 | None:intergenic |
| GTTGTTAGCCACAGTGGAAG+GGG | 0.545341 | 1_4:-28913553 | None:intergenic |
| ATCCCTCAATCGGATGATCA+AGG | 0.545906 | 1_4:+28911690 | Msa0158940:CDS |
| TTCGAGAAACTTATGATAGT+CGG | 0.546362 | 1_4:-28911649 | None:intergenic |
| ATAGCAGGGAACCCAACAGC+AGG | 0.548068 | 1_4:-28913498 | None:intergenic |
| CTTTGTTTGCAATCGCGTGG+TGG | 0.550397 | 1_4:+28912177 | Msa0158940:CDS |
| CGTTCCTTCTGATGAAGCCA+GGG | 0.553313 | 1_4:+28911716 | Msa0158940:CDS |
| TAAGAAGGGTGGCTCTAAAA+GGG | 0.555483 | 1_4:+28913614 | Msa0158940:CDS |
| GCAGACTCCTGCATGGTCAT+GGG | 0.561161 | 1_4:-28912210 | None:intergenic |
| TCAACCCTGGCTTCATCAGA+AGG | 0.561420 | 1_4:-28911720 | None:intergenic |
| CTTCTCATGTCTGATGCCGA+TGG | 0.561993 | 1_4:+28911603 | Msa0158940:CDS |
| CGCCTTTGTTTGCAATCGCG+TGG | 0.567414 | 1_4:+28912174 | Msa0158940:CDS |
| TCAATCTCTGAGAGAGGGGA+GGG | 0.571462 | 1_4:-28911576 | None:intergenic |
| GCAAACAAAGGCGCAAAGCA+TGG | 0.573484 | 1_4:-28912164 | None:intergenic |
| TGAGTTGGCACATGATGCCC+AGG | 0.575121 | 1_4:-28913525 | None:intergenic |
| AAGATGATGAATGATTTGAA+TGG | 0.581112 | 1_4:-28911422 | None:intergenic |
| TGTTGTTAGCCACAGTGGAA+GGG | 0.582265 | 1_4:-28913554 | None:intergenic |
| GATTTGAATGGAATTAGTGA+AGG | 0.584372 | 1_4:-28911410 | None:intergenic |
| CTCAATCTCTGAGAGAGGGG+AGG | 0.584965 | 1_4:-28911577 | None:intergenic |
| GGTTCAGGAGGAACCTCTTG+AGG | 0.589392 | 1_4:-28911753 | None:intergenic |
| TGATGACGACGCAATTCCAT+CGG | 0.590462 | 1_4:-28911619 | None:intergenic |
| GTTACCTCCAAGAGAAAACA+TGG | 0.596124 | 1_4:+28913579 | Msa0158940:CDS |
| AGATTCTCAATCTCTGAGAG+AGG | 0.602579 | 1_4:-28911582 | None:intergenic |
| GTGGAAGGGGTAGACTGAGT+TGG | 0.606292 | 1_4:-28913540 | None:intergenic |
| AGGAGTTACTGGATCAACCC+TGG | 0.607536 | 1_4:-28911733 | None:intergenic |
| CACCACGCGATTGCAAACAA+AGG | 0.612821 | 1_4:-28912176 | None:intergenic |
| GGGTCTGCGACGGAAACAGA+AGG | 0.621465 | 1_4:-28911552 | None:intergenic |
| ATTCTCAATCTCTGAGAGAG+GGG | 0.625653 | 1_4:-28911580 | None:intergenic |
| GAACAAATAGAACATCTGAA+AGG | 0.627981 | 1_4:-28913761 | None:intergenic |
| AACACTGTTGTTAGCCACAG+TGG | 0.628137 | 1_4:-28913559 | None:intergenic |
| AAAATCTTGAGACGAAGAGT+AGG | 0.630085 | 1_4:+28912082 | Msa0158940:CDS |
| TGATCCAGTAACTCCTCAAG+AGG | 0.636811 | 1_4:+28911740 | Msa0158940:CDS |
| AAAAGTGAGAGAGATAGAGA+GGG | 0.638866 | 1_4:-28913816 | None:intergenic |
| TTTCAGGCAGATGAGGAACA+GGG | 0.660559 | 1_4:+28912017 | Msa0158940:intron |
| GGAACACAAAGGTCTAAGAA+GGG | 0.664648 | 1_4:+28913600 | Msa0158940:CDS |
| GTGAGAGCGGTTATAAACAG+TGG | 0.666996 | 1_4:-28911359 | None:intergenic |
| CTGCTGTTAAGTCAAGAGAG+AGG | 0.673372 | 1_4:+28912043 | Msa0158940:CDS |
| TAGCAGGGAACCCAACAGCA+GGG | 0.674308 | 1_4:-28913497 | None:intergenic |
| ACACAAAGGTCTAAGAAGGG+TGG | 0.678689 | 1_4:+28913603 | Msa0158940:CDS |
| GAGCACAGCAGACTCCTGCA+TGG | 0.688063 | 1_4:-28912217 | None:intergenic |
| GATGCCCAGGAACCATAGCA+GGG | 0.695327 | 1_4:-28913512 | None:intergenic |
| AGAGAAAACATGGAACACAA+AGG | 0.721160 | 1_4:+28913589 | Msa0158940:CDS |
| TCAGTCTACCCCTTCCACTG+TGG | 0.742334 | 1_4:+28913545 | Msa0158940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTCATTATCATTTTATTTT+AGG | + | chr1_4:28912294-28912313 | Msa0158940:intron | 15.0% |
| !! | ATAGTTTCAATTTCATATAT+TGG | + | chr1_4:28912470-28912489 | Msa0158940:intron | 15.0% |
| !!! | TACATATTTTTTTTGTAACT+AGG | - | chr1_4:28913875-28913894 | None:intergenic | 15.0% |
| !!! | TAATTTGTAATTTGTATTCG+AGG | + | chr1_4:28911928-28911947 | Msa0158940:intron | 20.0% |
| !!! | AGTAAGCAAAAAAATTTGTT+AGG | - | chr1_4:28912417-28912436 | None:intergenic | 20.0% |
| !! | AGAGATTAATGTTACAATTT+GGG | - | chr1_4:28912510-28912529 | None:intergenic | 20.0% |
| !! | TAGAGATTAATGTTACAATT+TGG | - | chr1_4:28912511-28912530 | None:intergenic | 20.0% |
| !!! | TTAGTTGATATTGAATAAGA+TGG | + | chr1_4:28912563-28912582 | Msa0158940:intron | 20.0% |
| !! | TACATAAAACATAAACAACA+TGG | + | chr1_4:28913283-28913302 | Msa0158940:intron | 20.0% |
| !! | ATTCATTTAACATGCATAAA+GGG | - | chr1_4:28913341-28913360 | None:intergenic | 20.0% |
| !! | TATTCATTTAACATGCATAA+AGG | - | chr1_4:28913342-28913361 | None:intergenic | 20.0% |
| !!! | ATGTTATAAAACTTTTGAAG+TGG | + | chr1_4:28913736-28913755 | Msa0158940:exon | 20.0% |
| !!! | TGTTATAAAACTTTTGAAGT+GGG | + | chr1_4:28913737-28913756 | Msa0158940:exon | 20.0% |
| ! | AAGATGATGAATGATTTGAA+TGG | - | chr1_4:28911425-28911444 | None:intergenic | 25.0% |
| ! | ATCATCTTCTTCATAATTTC+TGG | + | chr1_4:28911437-28911456 | Msa0158940:five_prime_UTR | 25.0% |
| ! | TCATCTTCTTCATAATTTCT+GGG | + | chr1_4:28911438-28911457 | Msa0158940:five_prime_UTR | 25.0% |
| !!! | CTAATTTGCTTTTTTGAAAC+GGG | - | chr1_4:28911777-28911796 | None:intergenic | 25.0% |
| !!! | CCTAATTTGCTTTTTTGAAA+CGG | - | chr1_4:28911778-28911797 | None:intergenic | 25.0% |
| ! | TTACAGAATATGATCAACAT+TGG | - | chr1_4:28911827-28911846 | None:intergenic | 25.0% |
| !! | CTAAAAGTATAACCATATGA+AGG | + | chr1_4:28912333-28912352 | Msa0158940:intron | 25.0% |
| ! | AACTATATAGCATTAGCAAA+AGG | - | chr1_4:28912456-28912475 | None:intergenic | 25.0% |
| ! | TTCAATATCAACTAACAAGT+TGG | - | chr1_4:28912558-28912577 | None:intergenic | 25.0% |
| !!! | ATGGATAATATGCTTTTTGT+CGG | + | chr1_4:28912582-28912601 | Msa0158940:intron | 25.0% |
| !!! | ACGTCTTTAGGTTTTTTATT+GGG | + | chr1_4:28912657-28912676 | Msa0158940:intron | 25.0% |
| ! | TTTAACAGTGTTATGAATAG+TGG | + | chr1_4:28912719-28912738 | Msa0158940:intron | 25.0% |
| !! | AAACAGAAAACCTTAGATTT+TGG | + | chr1_4:28912891-28912910 | Msa0158940:intron | 25.0% |
| ! | TACATAAAGCTCACTAATTA+TGG | - | chr1_4:28913022-28913041 | None:intergenic | 25.0% |
| !!! | TCAGAGATATTTTTACTGTT+TGG | - | chr1_4:28913640-28913659 | None:intergenic | 25.0% |
| !!! | GTTATAAAACTTTTGAAGTG+GGG | + | chr1_4:28913738-28913757 | Msa0158940:exon | 25.0% |
| ! | AAAGAAAATGCAAAGAAAGA+AGG | - | chr1_4:28913786-28913805 | None:intergenic | 25.0% |
| ! | AATATGTAAACCAAACATGT+TGG | + | chr1_4:28913887-28913906 | Msa0158940:three_prime_UTR | 25.0% |
| ! | ATATGTAAACCAAACATGTT+GGG | + | chr1_4:28913888-28913907 | Msa0158940:three_prime_UTR | 25.0% |
| !! | TTCTTCCTATTTGAAACATA+TGG | + | chr1_4:28913964-28913983 | Msa0158940:three_prime_UTR | 25.0% |
| ! | AACTTCCATATGTTTCAAAT+AGG | - | chr1_4:28913972-28913991 | None:intergenic | 25.0% |
| AGAAGAAAAAAAAGTGAGAG+CGG | - | chr1_4:28911375-28911394 | None:intergenic | 30.0% | |
| GATTTGAATGGAATTAGTGA+AGG | - | chr1_4:28911413-28911432 | None:intergenic | 30.0% | |
| TTCGAGAAACTTATGATAGT+CGG | - | chr1_4:28911652-28911671 | None:intergenic | 30.0% | |
| CCGTTTCAAAAAAGCAAATT+AGG | + | chr1_4:28911775-28911794 | Msa0158940:CDS | 30.0% | |
| AAATTACAAATTACTCCAGC+AGG | - | chr1_4:28911921-28911940 | None:intergenic | 30.0% | |
| !!! | TGTTTTGGTATCTGATTTTC+AGG | + | chr1_4:28912001-28912020 | Msa0158940:intron | 30.0% |
| GGTTTCATTATTGCATTCTT+TGG | + | chr1_4:28912383-28912402 | Msa0158940:intron | 30.0% | |
| TATTGCATTCTTTGGTTGTT+TGG | + | chr1_4:28912391-28912410 | Msa0158940:intron | 30.0% | |
| TGCTTACTTTCTTGAATTGA+TGG | + | chr1_4:28912429-28912448 | Msa0158940:intron | 30.0% | |
| ATAACAGCAAGAAGAAAACT+TGG | - | chr1_4:28912619-28912638 | None:intergenic | 30.0% | |
| !!! | GACGTCTTTAGGTTTTTTAT+TGG | + | chr1_4:28912656-28912675 | Msa0158940:intron | 30.0% |
| TTGAATTTCAGATCTCATCT+CGG | - | chr1_4:28912841-28912860 | None:intergenic | 30.0% | |
| !! | TCTAAGGTTTTCTGTTTCAT+GGG | - | chr1_4:28912888-28912907 | None:intergenic | 30.0% |
| !! | ATCTAAGGTTTTCTGTTTCA+TGG | - | chr1_4:28912889-28912908 | None:intergenic | 30.0% |
| CTAAGATACTCCAAAATCTA+AGG | - | chr1_4:28912904-28912923 | None:intergenic | 30.0% | |
| !!! | CTTAGATTTTGGAGTATCTT+AGG | + | chr1_4:28912902-28912921 | Msa0158940:intron | 30.0% |
| ATAATATTTCACCTTCTCAC+TGG | + | chr1_4:28912989-28913008 | Msa0158940:intron | 30.0% | |
| !! | TTTAGGTTTTTGCGTCTAAA+TGG | + | chr1_4:28913121-28913140 | Msa0158940:intron | 30.0% |
| ! | TTAGGTTTTTGCGTCTAAAT+GGG | + | chr1_4:28913122-28913141 | Msa0158940:intron | 30.0% |
| ACCTTTGGACCAAAAAAAAA+AGG | - | chr1_4:28913219-28913238 | None:intergenic | 30.0% | |
| !!! | TACTTTTTCTCTGAGAGTTT+TGG | - | chr1_4:28913314-28913333 | None:intergenic | 30.0% |
| ! | GTTTTATGAAGTTGCTCTAA+TGG | + | chr1_4:28913413-28913432 | Msa0158940:intron | 30.0% |
| GAACAAATAGAACATCTGAA+AGG | - | chr1_4:28913764-28913783 | None:intergenic | 30.0% | |
| ! | TTCATAATTTCTGGGTAGCA+TGG | + | chr1_4:28911446-28911465 | Msa0158940:exon | 35.0% |
| !! | AGAGATTCGAAATCGATTTG+AGG | - | chr1_4:28911483-28911502 | None:intergenic | 35.0% |
| ATCATCCTCCTGCAAAAAAT+CGG | - | chr1_4:28911526-28911545 | None:intergenic | 35.0% | |
| ! | TTCTTTTCTTTTCAACCTGC+TGG | + | chr1_4:28911903-28911922 | Msa0158940:intron | 35.0% |
| !!! | GGTTCTAATGAGAAGTGTTT+TGG | + | chr1_4:28911986-28912005 | Msa0158940:intron | 35.0% |
| AAAATCTTGAGACGAAGAGT+AGG | + | chr1_4:28912082-28912101 | Msa0158940:CDS | 35.0% | |
| !! | ACGAAGAGTAGGTATTTTGA+AGG | + | chr1_4:28912093-28912112 | Msa0158940:CDS | 35.0% |
| !! | CGAAGAGTAGGTATTTTGAA+GGG | + | chr1_4:28912094-28912113 | Msa0158940:CDS | 35.0% |
| !! | GAAGAGTAGGTATTTTGAAG+GGG | + | chr1_4:28912095-28912114 | Msa0158940:CDS | 35.0% |
| AGTCACTGTAATCCTTCATA+TGG | - | chr1_4:28912348-28912367 | None:intergenic | 35.0% | |
| CCTAAAGACGTCTTTAACAT+CGG | - | chr1_4:28912648-28912667 | None:intergenic | 35.0% | |
| TGTTATGAATAGTGGTGTAG+CGG | + | chr1_4:28912727-28912746 | Msa0158940:intron | 35.0% | |
| TGAATTTCAGATCTCATCTC+GGG | - | chr1_4:28912840-28912859 | None:intergenic | 35.0% | |
| AAAAACACCATGACAGTGTT+CGG | + | chr1_4:28912940-28912959 | Msa0158940:intron | 35.0% | |
| ! | AGTGAGCTTTATGTATGTAC+TGG | + | chr1_4:28913027-28913046 | Msa0158940:intron | 35.0% |
| TGACCTCAAAAACACTATAG+CGG | - | chr1_4:28913058-28913077 | None:intergenic | 35.0% | |
| AGCAACTATGCTATGTTATC+TGG | + | chr1_4:28913077-28913096 | Msa0158940:intron | 35.0% | |
| GCAACTATGCTATGTTATCT+GGG | + | chr1_4:28913078-28913097 | Msa0158940:intron | 35.0% | |
| ! | TAGGTTTTTGCGTCTAAATG+GGG | + | chr1_4:28913123-28913142 | Msa0158940:intron | 35.0% |
| TAACAATCACAACCACTTGT+TGG | + | chr1_4:28913161-28913180 | Msa0158940:intron | 35.0% | |
| CAAAAAAAAAAGGCTACAGG+AGG | - | chr1_4:28913209-28913228 | None:intergenic | 35.0% | |
| !!! | CTCCTGTAGCCTTTTTTTTT+TGG | + | chr1_4:28913207-28913226 | Msa0158940:intron | 35.0% |
| GACCAAAAAAAAAAGGCTAC+AGG | - | chr1_4:28913212-28913231 | None:intergenic | 35.0% | |
| !!! | GCCTTTTTTTTTTGGTCCAA+AGG | + | chr1_4:28913215-28913234 | Msa0158940:intron | 35.0% |
| CAAATCTGGATTACAGCAAA+AGG | - | chr1_4:28913248-28913267 | None:intergenic | 35.0% | |
| TTTGCATAAGCACACAAATC+TGG | - | chr1_4:28913262-28913281 | None:intergenic | 35.0% | |
| ! | TTGTGTTCCATGTTTTCTCT+TGG | - | chr1_4:28913589-28913608 | None:intergenic | 35.0% |
| AGAGAAAACATGGAACACAA+AGG | + | chr1_4:28913589-28913608 | Msa0158940:CDS | 35.0% | |
| TCTTTACAAACGATTGAGTC+AGG | - | chr1_4:28913669-28913688 | None:intergenic | 35.0% | |
| AAAAGTGAGAGAGATAGAGA+GGG | - | chr1_4:28913819-28913838 | None:intergenic | 35.0% | |
| AAAAAGTGAGAGAGATAGAG+AGG | - | chr1_4:28913820-28913839 | None:intergenic | 35.0% | |
| !! | TCTCTATCTCTCTCACTTTT+TGG | + | chr1_4:28913819-28913838 | Msa0158940:three_prime_UTR | 35.0% |
| ! | ATTCTCAATCTCTGAGAGAG+GGG | - | chr1_4:28911583-28911602 | None:intergenic | 40.0% |
| ! | GATTCTCAATCTCTGAGAGA+GGG | - | chr1_4:28911584-28911603 | None:intergenic | 40.0% |
| ! | AGATTCTCAATCTCTGAGAG+AGG | - | chr1_4:28911585-28911604 | None:intergenic | 40.0% |
| AACCTTGATCATCCGATTGA+GGG | - | chr1_4:28911695-28911714 | None:intergenic | 40.0% | |
| AAACCTTGATCATCCGATTG+AGG | - | chr1_4:28911696-28911715 | None:intergenic | 40.0% | |
| !!! | TTTTTTGAAACGGGTTCAGG+AGG | - | chr1_4:28911768-28911787 | None:intergenic | 40.0% |
| !!! | TGCTTTTTTGAAACGGGTTC+AGG | - | chr1_4:28911771-28911790 | None:intergenic | 40.0% |
| TTCGAGGTTACCGAATTTGA+TGG | + | chr1_4:28911944-28911963 | Msa0158940:intron | 40.0% | |
| TCGAGGTTACCGAATTTGAT+GGG | + | chr1_4:28911945-28911964 | Msa0158940:intron | 40.0% | |
| CCATAAGACCCCATCAAATT+CGG | - | chr1_4:28911957-28911976 | None:intergenic | 40.0% | |
| ! | CGAATTTGATGGGGTCTTAT+GGG | + | chr1_4:28911955-28911974 | Msa0158940:intron | 40.0% |
| !! | ATCTGATTTTCAGGCAGATG+AGG | + | chr1_4:28912010-28912029 | Msa0158940:intron | 40.0% |
| GTGACTTTGCACGAATGATT+TGG | + | chr1_4:28912362-28912381 | Msa0158940:intron | 40.0% | |
| CCGATGTTAAAGACGTCTTT+AGG | + | chr1_4:28912645-28912664 | Msa0158940:intron | 40.0% | |
| AAAACACCATGACAGTGTTC+GGG | + | chr1_4:28912941-28912960 | Msa0158940:intron | 40.0% | |
| !! | ATCCCGCTATAGTGTTTTTG+AGG | + | chr1_4:28913052-28913071 | Msa0158940:intron | 40.0% |
| GACCTCAAAAACACTATAGC+GGG | - | chr1_4:28913057-28913076 | None:intergenic | 40.0% | |
| ! | GATACATACCACTGCTGTTT+AGG | + | chr1_4:28913104-28913123 | Msa0158940:intron | 40.0% |
| ATCTGGATTACAGCAAAAGG+AGG | - | chr1_4:28913245-28913264 | None:intergenic | 40.0% | |
| TCTTCGAATGATGGCAACAT+TGG | - | chr1_4:28913389-28913408 | None:intergenic | 40.0% | |
| AAAACCCACTCTTCGAATGA+TGG | - | chr1_4:28913398-28913417 | None:intergenic | 40.0% | |
| GTTACCTCCAAGAGAAAACA+TGG | + | chr1_4:28913579-28913598 | Msa0158940:CDS | 40.0% | |
| ! | TGTTCCATGTTTTCTCTTGG+AGG | - | chr1_4:28913586-28913605 | None:intergenic | 40.0% |
| TGGAACACAAAGGTCTAAGA+AGG | + | chr1_4:28913599-28913618 | Msa0158940:CDS | 40.0% | |
| GGAACACAAAGGTCTAAGAA+GGG | + | chr1_4:28913600-28913619 | Msa0158940:CDS | 40.0% | |
| !! | TAAGAAGGGTGGCTCTAAAA+GGG | + | chr1_4:28913614-28913633 | Msa0158940:CDS | 40.0% |
| TCATCTTCGTTCTTGAAGCT+TGG | - | chr1_4:28913702-28913721 | None:intergenic | 40.0% | |
| !! | CAAAAGCATCCCAACATGTT+TGG | - | chr1_4:28913900-28913919 | None:intergenic | 40.0% |
| ! | CAAACATGTTGGGATGCTTT+TGG | + | chr1_4:28913898-28913917 | Msa0158940:three_prime_UTR | 40.0% |
| GTGAGAGCGGTTATAAACAG+TGG | - | chr1_4:28911362-28911381 | None:intergenic | 45.0% | |
| ! | TGATGACGACGCAATTCCAT+CGG | - | chr1_4:28911622-28911641 | None:intergenic | 45.0% |
| TGGAATTGCGTCGTCATCAT+CGG | + | chr1_4:28911623-28911642 | Msa0158940:CDS | 45.0% | |
| GATCATCCGATTGAGGGATT+GGG | - | chr1_4:28911689-28911708 | None:intergenic | 45.0% | |
| TGATCATCCGATTGAGGGAT+TGG | - | chr1_4:28911690-28911709 | None:intergenic | 45.0% | |
| ATCCCTCAATCGGATGATCA+AGG | + | chr1_4:28911690-28911709 | Msa0158940:CDS | 45.0% | |
| TGATCCAGTAACTCCTCAAG+AGG | + | chr1_4:28911740-28911759 | Msa0158940:CDS | 45.0% | |
| CGAGGTTACCGAATTTGATG+GGG | + | chr1_4:28911946-28911965 | Msa0158940:intron | 45.0% | |
| CCGAATTTGATGGGGTCTTA+TGG | + | chr1_4:28911954-28911973 | Msa0158940:intron | 45.0% | |
| ! | GGGGTCTTATGGGATGATTA+TGG | + | chr1_4:28911965-28911984 | Msa0158940:intron | 45.0% |
| !! | TTTTCAGGCAGATGAGGAAC+AGG | + | chr1_4:28912016-28912035 | Msa0158940:intron | 45.0% |
| TTTCAGGCAGATGAGGAACA+GGG | + | chr1_4:28912017-28912036 | Msa0158940:intron | 45.0% | |
| CTGCTGTTAAGTCAAGAGAG+AGG | + | chr1_4:28912043-28912062 | Msa0158940:CDS | 45.0% | |
| TGCTTGTTTGTAGCAGCCAA+GGG | - | chr1_4:28912758-28912777 | None:intergenic | 45.0% | |
| GGCCAATATAGCTCATGTTG+CGG | + | chr1_4:28912800-28912819 | Msa0158940:intron | 45.0% | |
| ATTTCAGATCTCATCTCGGG+CGG | - | chr1_4:28912837-28912856 | None:intergenic | 45.0% | |
| CTTCTCATGCTGTCTCATTC+AGG | + | chr1_4:28912964-28912983 | Msa0158940:intron | 45.0% | |
| CGCAAAAACCTAAACAGCAG+TGG | - | chr1_4:28913115-28913134 | None:intergenic | 45.0% | |
| CTCTGACAAAGACCAACAAG+TGG | - | chr1_4:28913176-28913195 | None:intergenic | 45.0% | |
| ! | AGCAAAAGGAGGTACACCTT+TGG | - | chr1_4:28913234-28913253 | None:intergenic | 45.0% |
| TGTTGCCATCATTCGAAGAG+TGG | + | chr1_4:28913390-28913409 | Msa0158940:intron | 45.0% | |
| GTTGCCATCATTCGAAGAGT+GGG | + | chr1_4:28913391-28913410 | Msa0158940:intron | 45.0% | |
| ! | TTTTGCAGAATCCCTGCTGT+TGG | + | chr1_4:28913486-28913505 | Msa0158940:intron | 45.0% |
| TTTGCAGAATCCCTGCTGTT+GGG | + | chr1_4:28913487-28913506 | Msa0158940:intron | 45.0% | |
| TGTTGTTAGCCACAGTGGAA+GGG | - | chr1_4:28913557-28913576 | None:intergenic | 45.0% | |
| AACACTGTTGTTAGCCACAG+TGG | - | chr1_4:28913562-28913581 | None:intergenic | 45.0% | |
| ACACAAAGGTCTAAGAAGGG+TGG | + | chr1_4:28913603-28913622 | Msa0158940:CDS | 45.0% | |
| !! | CTAAGAAGGGTGGCTCTAAA+AGG | + | chr1_4:28913613-28913632 | Msa0158940:CDS | 45.0% |
| !!! | CGAAGTCGCCGATTTTTTGC+AGG | + | chr1_4:28911515-28911534 | Msa0158940:CDS | 50.0% |
| !!! | AGTCGCCGATTTTTTGCAGG+AGG | + | chr1_4:28911518-28911537 | Msa0158940:CDS | 50.0% |
| ! | TCAATCTCTGAGAGAGGGGA+GGG | - | chr1_4:28911579-28911598 | None:intergenic | 50.0% |
| CTTCTCATGTCTGATGCCGA+TGG | + | chr1_4:28911603-28911622 | Msa0158940:CDS | 50.0% | |
| TCGTTCCTTCTGATGAAGCC+AGG | + | chr1_4:28911715-28911734 | Msa0158940:CDS | 50.0% | |
| CGTTCCTTCTGATGAAGCCA+GGG | + | chr1_4:28911716-28911735 | Msa0158940:CDS | 50.0% | |
| TCAACCCTGGCTTCATCAGA+AGG | - | chr1_4:28911723-28911742 | None:intergenic | 50.0% | |
| AGGAGTTACTGGATCAACCC+TGG | - | chr1_4:28911736-28911755 | None:intergenic | 50.0% | |
| GGAACCTCTTGAGGAGTTAC+TGG | - | chr1_4:28911747-28911766 | None:intergenic | 50.0% | |
| TGAAGGGGAATGCAGAAGAC+TGG | + | chr1_4:28912110-28912129 | Msa0158940:CDS | 50.0% | |
| ! | GCAAACAAAGGCGCAAAGCA+TGG | - | chr1_4:28912167-28912186 | None:intergenic | 50.0% |
| CACCACGCGATTGCAAACAA+AGG | - | chr1_4:28912179-28912198 | None:intergenic | 50.0% | |
| ! | CTTTGTTTGCAATCGCGTGG+TGG | + | chr1_4:28912177-28912196 | Msa0158940:CDS | 50.0% |
| GAGTCTGCTGTGCTCTTGTT+GGG | + | chr1_4:28912225-28912244 | Msa0158940:CDS | 50.0% | |
| TGCTGTGCTCTTGTTGGGTA+AGG | + | chr1_4:28912230-28912249 | Msa0158940:intron | 50.0% | |
| ! | TGAATAGTGGTGTAGCGGAG+TGG | + | chr1_4:28912732-28912751 | Msa0158940:intron | 50.0% |
| CTGCTTGTTTGTAGCAGCCA+AGG | - | chr1_4:28912759-28912778 | None:intergenic | 50.0% | |
| GGCCGCAACATGAGCTATAT+TGG | - | chr1_4:28912805-28912824 | None:intergenic | 50.0% | |
| ATGGTGACTGACCAGTGAGA+AGG | - | chr1_4:28913003-28913022 | None:intergenic | 50.0% | |
| GTTGTTAGCCACAGTGGAAG+GGG | - | chr1_4:28913556-28913575 | None:intergenic | 50.0% | |
| CTGTTGTTAGCCACAGTGGA+AGG | - | chr1_4:28913558-28913577 | None:intergenic | 50.0% | |
| TCTGGGTAGCATGGACGCTT+TGG | + | chr1_4:28911455-28911474 | Msa0158940:exon | 55.0% | |
| ! | CTCAATCTCTGAGAGAGGGG+AGG | - | chr1_4:28911580-28911599 | None:intergenic | 55.0% |
| CCTCGACCCAATCCCTCAAT+CGG | + | chr1_4:28911680-28911699 | Msa0158940:CDS | 55.0% | |
| GGTTCAGGAGGAACCTCTTG+AGG | - | chr1_4:28911756-28911775 | None:intergenic | 55.0% | |
| ! | CGCCTTTGTTTGCAATCGCG+TGG | + | chr1_4:28912174-28912193 | Msa0158940:CDS | 55.0% |
| TTGCAATCGCGTGGTGGCTT+TGG | + | chr1_4:28912183-28912202 | Msa0158940:CDS | 55.0% | |
| GCAGACTCCTGCATGGTCAT+GGG | - | chr1_4:28912213-28912232 | None:intergenic | 55.0% | |
| AGCAGACTCCTGCATGGTCA+TGG | - | chr1_4:28912214-28912233 | None:intergenic | 55.0% | |
| GGAGTCTGCTGTGCTCTTGT+TGG | + | chr1_4:28912224-28912243 | Msa0158940:CDS | 55.0% | |
| TAGTGCAGCTGCTGCTAGAG+CGG | + | chr1_4:28912779-28912798 | Msa0158940:intron | 55.0% | |
| GAGAAGCCCGAACACTGTCA+TGG | - | chr1_4:28912950-28912969 | None:intergenic | 55.0% | |
| TAGCAGGGAACCCAACAGCA+GGG | - | chr1_4:28913500-28913519 | None:intergenic | 55.0% | |
| ATAGCAGGGAACCCAACAGC+AGG | - | chr1_4:28913501-28913520 | None:intergenic | 55.0% | |
| TGCTGTTGGGTTCCCTGCTA+TGG | + | chr1_4:28913500-28913519 | Msa0158940:CDS | 55.0% | |
| GGTTCCCTGCTATGGTTCCT+GGG | + | chr1_4:28913508-28913527 | Msa0158940:CDS | 55.0% | |
| GATGCCCAGGAACCATAGCA+GGG | - | chr1_4:28913515-28913534 | None:intergenic | 55.0% | |
| TGATGCCCAGGAACCATAGC+AGG | - | chr1_4:28913516-28913535 | None:intergenic | 55.0% | |
| ! | TGAGTTGGCACATGATGCCC+AGG | - | chr1_4:28913528-28913547 | None:intergenic | 55.0% |
| GTGGAAGGGGTAGACTGAGT+TGG | - | chr1_4:28913543-28913562 | None:intergenic | 55.0% | |
| TCAGTCTACCCCTTCCACTG+TGG | + | chr1_4:28913545-28913564 | Msa0158940:CDS | 55.0% | |
| GGGTCTGCGACGGAAACAGA+AGG | - | chr1_4:28911555-28911574 | None:intergenic | 60.0% | |
| ! | TCTCTGAGAGAGGGGAGGGA+GGG | - | chr1_4:28911575-28911594 | None:intergenic | 60.0% |
| ! | ATCTCTGAGAGAGGGGAGGG+AGG | - | chr1_4:28911576-28911595 | None:intergenic | 60.0% |
| CCGATTGAGGGATTGGGTCG+AGG | - | chr1_4:28911683-28911702 | None:intergenic | 60.0% | |
| TGGTGCTCCCATGACCATGC+AGG | + | chr1_4:28912203-28912222 | Msa0158940:CDS | 60.0% | |
| GAGCACAGCAGACTCCTGCA+TGG | - | chr1_4:28912220-28912239 | None:intergenic | 60.0% | |
| CATCTCGGGCGGCACTTTAG+AGG | - | chr1_4:28912826-28912845 | None:intergenic | 60.0% | |
| GGGTTCCCTGCTATGGTTCC+TGG | + | chr1_4:28913507-28913526 | Msa0158940:CDS | 60.0% | |
| ! | TGGTGTAGCGGAGTGGCCCT+TGG | + | chr1_4:28912739-28912758 | Msa0158940:intron | 65.0% |
| AGGGGAGGGAGGGTCTGCGA+CGG | - | chr1_4:28911565-28911584 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 28911341 | 28914033 | 28911341 | ID=Msa0158940;Name=Msa0158940 |
| chr1_4 | mRNA | 28911341 | 28914033 | 28911341 | ID=Msa0158940-mRNA-1;Parent=Msa0158940;Name=Msa0158940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=124|1|1|1|0.5|1|3|289|268 |
| chr1_4 | exon | 28911341 | 28911796 | 28911341 | ID=Msa0158940-mRNA-1:exon:9295;Parent=Msa0158940-mRNA-1 |
| chr1_4 | exon | 28912023 | 28912246 | 28912023 | ID=Msa0158940-mRNA-1:exon:9296;Parent=Msa0158940-mRNA-1 |
| chr1_4 | exon | 28913494 | 28914033 | 28913494 | ID=Msa0158940-mRNA-1:exon:9297;Parent=Msa0158940-mRNA-1 |
| chr1_4 | five_prime_UTR | 28911341 | 28911464 | 28911341 | ID=Msa0158940-mRNA-1:five_prime_utr;Parent=Msa0158940-mRNA-1 |
| chr1_4 | CDS | 28911465 | 28911796 | 28911465 | ID=Msa0158940-mRNA-1:cds;Parent=Msa0158940-mRNA-1 |
| chr1_4 | CDS | 28912023 | 28912246 | 28912023 | ID=Msa0158940-mRNA-1:cds;Parent=Msa0158940-mRNA-1 |
| chr1_4 | CDS | 28913494 | 28913744 | 28913494 | ID=Msa0158940-mRNA-1:cds;Parent=Msa0158940-mRNA-1 |
| chr1_4 | three_prime_UTR | 28913745 | 28914033 | 28913745 | ID=Msa0158940-mRNA-1:three_prime_utr;Parent=Msa0158940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
