AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444120 MtrunA17_Chr4g0073891 97.642 636 10 2 1 636 1 631 0.0 1261
Msa1444120 MtrunA17_Chr4g0003161 30.962 239 147 3 397 635 75 295 8.53e-31 126
Msa1444120 MtrunA17_Chr7g0266491 28.082 292 192 4 332 623 75 348 6.48e-30 124
Msa1444120 MtrunA17_Chr2g0333241 30.544 239 148 3 397 635 75 295 1.13e-29 122
Msa1444120 MtrunA17_Chr8g0350161 29.730 296 179 7 348 635 94 368 3.75e-27 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444120 AT4G30600.2 75.307 652 127 14 1 636 1 634 0.0 887
Msa1444120 AT4G30600.1 75.307 652 127 14 1 636 1 634 0.0 887
Msa1444120 AT1G48900.2 26.797 306 206 3 330 635 8 295 4.77e-32 129
Msa1444120 AT1G48900.1 26.797 306 206 3 330 635 8 295 5.85e-32 130
Msa1444120 AT5G03940.1 28.571 294 192 4 330 623 83 358 7.92e-32 130
Msa1444120 AT1G15310.1 28.727 275 178 3 361 635 39 295 1.38e-31 129
Msa1444120 AT2G45770.1 29.667 300 180 8 344 635 89 365 4.12e-27 114
Msa1444120 AT5G49500.1 24.351 308 213 4 330 635 8 297 2.47e-23 104
Msa1444120 AT5G49500.2 29.480 173 111 2 463 635 14 175 6.12e-20 92.8

Find 160 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTTCATCCTTTCATTTA+AGG 0.135782 tig0030658:-46697 None:intergenic
GCAGTTTGGTTTGTTTATTT+TGG 0.181230 tig0030658:+46852 Msa1444120:three_prime_UTR
GGATAGGAAGGTTGATTATT+TGG 0.186314 tig0030658:+43343 Msa1444120:CDS
CTTTCAATGGTTTACATATC+TGG 0.196127 tig0030658:+46593 Msa1444120:CDS
TGATTATGCAGGTTGCTTAC+TGG 0.239203 tig0030658:+44917 Msa1444120:intron
GTTGGTAATGTTAGTGTAAA+TGG 0.240516 tig0030658:+43104 Msa1444120:CDS
CATAACCCTTCTCAAATATA+GGG 0.264100 tig0030658:-45120 None:intergenic
TCATAACCCTTCTCAAATAT+AGG 0.269160 tig0030658:-45121 None:intergenic
CTCTGGTCATGCAATGAAAT+TGG 0.273870 tig0030658:+42549 Msa1444120:CDS
GTTGTATTTGTTGGAGTTAA+TGG 0.282982 tig0030658:+44772 Msa1444120:CDS
CTTTATTCCTAACCTTCTTC+TGG 0.284805 tig0030658:-43175 None:intergenic
TATTGCTGGGAAGGCCAATT+TGG 0.285068 tig0030658:+44264 Msa1444120:CDS
AGTTTGGCCTACAGAGTAAT+AGG 0.294677 tig0030658:-46809 None:intergenic
CCATATGTTGTTGTATTTGT+TGG 0.324829 tig0030658:+44763 Msa1444120:CDS
CCTGACCTGGTCTTATTTGT+TGG 0.326012 tig0030658:+45979 Msa1444120:CDS
CAAGTCCGACTTCTCCAAAT+TGG 0.330709 tig0030658:-44278 None:intergenic
AAATCGCGTTACCTGGGTTT+GGG 0.339392 tig0030658:-42460 None:intergenic
AACCAAGGCTGAGCCGAAAA+AGG 0.357649 tig0030658:+43229 Msa1444120:CDS
GACTCATGCACGCAGACTTC+AGG 0.360707 tig0030658:+45014 Msa1444120:CDS
ATGCTTGTGCTCAGTATTGC+TGG 0.365590 tig0030658:+44250 Msa1444120:intron
AAAGTCATAGCCACATAGTT+TGG 0.375619 tig0030658:-46825 None:intergenic
AAAATCGCGTTACCTGGGTT+TGG 0.383736 tig0030658:-42461 None:intergenic
CAAGATCCCATCAATCAATC+TGG 0.383740 tig0030658:-46188 None:intergenic
AAACTATGTGGCTATGACTT+TGG 0.384030 tig0030658:+46827 Msa1444120:three_prime_UTR
GAGTTTCTTGAGGTCGGTAT+AGG 0.387081 tig0030658:-46648 None:intergenic
CAGAAGAAGGTTAGGAATAA+AGG 0.388438 tig0030658:+43176 Msa1444120:CDS
ACGGATCATGTTGATGTTGA+TGG 0.394256 tig0030658:+43308 Msa1444120:CDS
GGTGGGAGCTGCACTTTCAA+TGG 0.401497 tig0030658:+46580 Msa1444120:intron
CGGTGGTTGTAGGTGGGAAT+AGG 0.404012 tig0030658:+42901 Msa1444120:CDS
TTTGACAGTGCTCTCATCAA+TGG 0.412182 tig0030658:-45937 None:intergenic
ATAAATACATACCACATTCT+TGG 0.414415 tig0030658:-44338 None:intergenic
TCCTTCAGAGCTTTCAAAGC+TGG 0.420133 tig0030658:-44304 None:intergenic
TTGAGGAGTAACGGTGTTGT+TGG 0.422921 tig0030658:+43086 Msa1444120:CDS
CCAACAAATACAACAACATA+TGG 0.423685 tig0030658:-44763 None:intergenic
CTATGACTTTGGATGCAGTT+TGG 0.424172 tig0030658:+46838 Msa1444120:three_prime_UTR
GCCAGTGCTGGTGGTGGTGG+CGG 0.424543 tig0030658:+42972 Msa1444120:CDS
TTATTATTTGAGATTTGGTT+AGG 0.425421 tig0030658:-42359 None:intergenic
TGTGGCAAAAGAAGCAATTC+AGG 0.429961 tig0030658:+45159 Msa1444120:CDS
AAATCTAACTTAGTTTCAAC+GGG 0.430928 tig0030658:-43284 None:intergenic
TAGTGACAGTGAGGATGAAG+AGG 0.435461 tig0030658:+43412 Msa1444120:CDS
CAATTTGGAGAAGTCGGACT+TGG 0.441725 tig0030658:+44279 Msa1444120:CDS
AAATCGAATCCGGTGGTTGT+AGG 0.450153 tig0030658:+42891 Msa1444120:CDS
GTTCGACACTATTGATGATA+AGG 0.450965 tig0030658:+46219 Msa1444120:CDS
AATGCCAGTGCTGGTGGTGG+TGG 0.452714 tig0030658:+42969 Msa1444120:CDS
ACCGCCACCACCACCAGCAC+TGG 0.454509 tig0030658:-42973 None:intergenic
CGTTCTGTTATTGTGAATAA+CGG 0.459586 tig0030658:+43050 Msa1444120:CDS
TGTTGATGGGGATGCTGATA+AGG 0.462630 tig0030658:+43322 Msa1444120:CDS
GGAAGCTTCACGGAATGGTT+CGG 0.463640 tig0030658:+45180 Msa1444120:CDS
ATAGGCTCCAGAAGAAGGTT+AGG 0.465195 tig0030658:+43168 Msa1444120:CDS
AGTGCTGGTGGTGGTGGCGG+TGG 0.465276 tig0030658:+42975 Msa1444120:CDS
TCAGTGGCTGCAAGTCTTGA+AGG 0.467409 tig0030658:+44500 Msa1444120:CDS
GGCGTTCTATTGACATATTG+AGG 0.470946 tig0030658:+44710 Msa1444120:CDS
CAAGAGGAGGATTAATCCTC+TGG 0.471238 tig0030658:+42532 Msa1444120:CDS
CCTACACCCAGATTGATTGA+TGG 0.472241 tig0030658:+46181 Msa1444120:CDS
CGGATCATGTTGATGTTGAT+GGG 0.473173 tig0030658:+43309 Msa1444120:CDS
GAAGGTTGATTATTTGGCTA+AGG 0.473509 tig0030658:+43349 Msa1444120:CDS
TGGAGCTCCAGTCATGTTTG+TGG 0.474210 tig0030658:+46613 Msa1444120:CDS
CCAACAAATAAGACCAGGTC+AGG 0.474859 tig0030658:-45979 None:intergenic
TTTGTTGGAGTTAATGGAGT+TGG 0.477015 tig0030658:+44778 Msa1444120:CDS
TGGAAGGGAGATGGATCTGA+TGG 0.483093 tig0030658:+42939 Msa1444120:CDS
AAGGATATCTTCCACAGTGC+AGG 0.486091 tig0030658:+44544 Msa1444120:CDS
AAAATCTCGATACACGGTTC+TGG 0.486570 tig0030658:-42811 None:intergenic
AAAATCTAACTTAGTTTCAA+CGG 0.490122 tig0030658:-43285 None:intergenic
GAGCTGCTTATTCTCTCAAA+TGG 0.492519 tig0030658:+42667 Msa1444120:CDS
ATGGGGATGCTGATAAGGAT+AGG 0.493111 tig0030658:+43327 Msa1444120:CDS
CTTATTTGTTGGAGAAGCAC+TGG 0.493495 tig0030658:+45990 Msa1444120:CDS
GCTTGTGATACATTTCGATC+AGG 0.496091 tig0030658:+44973 Msa1444120:CDS
GTTAGGAATAAAGGCGGGAA+TGG 0.496788 tig0030658:+43185 Msa1444120:CDS
TGTAAATAGGCTCCAGAAGA+AGG 0.499134 tig0030658:+43163 Msa1444120:CDS
ATCTCGATACACGGTTCTGG+TGG 0.501240 tig0030658:-42808 None:intergenic
GATGATGAGGATGATGATGC+TGG 0.501399 tig0030658:+43440 Msa1444120:CDS
TGTTAATCCTATTACTCTGT+AGG 0.507822 tig0030658:+46802 Msa1444120:three_prime_UTR
GCGTTCTATTGACATATTGA+GGG 0.507989 tig0030658:+44711 Msa1444120:CDS
AGACCAGGTCAGGATTGTTA+AGG 0.512658 tig0030658:-45969 None:intergenic
CTATTCCCACCTACAACCAC+CGG 0.515311 tig0030658:-42900 None:intergenic
CCAGTCATGTTTGTGGGATG+CGG 0.515363 tig0030658:+46620 Msa1444120:CDS
TCAGATCCCTATATTTGAGA+AGG 0.520704 tig0030658:+45114 Msa1444120:intron
CTACACCCAGATTGATTGAT+GGG 0.521118 tig0030658:+46182 Msa1444120:CDS
ACGGTAACGGTTATAATTTG+AGG 0.521482 tig0030658:+43069 Msa1444120:CDS
CAGGAGCTGTTGAGCAGTTG+CGG 0.524608 tig0030658:+44992 Msa1444120:CDS
GAAATTGGCAACGCTTTGAA+AGG 0.527215 tig0030658:+42564 Msa1444120:CDS
GGAGCTCCAGTCATGTTTGT+GGG 0.528002 tig0030658:+46614 Msa1444120:CDS
CAGATCCCTATATTTGAGAA+GGG 0.528857 tig0030658:+45115 Msa1444120:intron
GACGTTGAGTTTCTTGAGGT+CGG 0.531116 tig0030658:-46654 None:intergenic
AAGCAATTCAGGAAGCTTCA+CGG 0.533244 tig0030658:+45170 Msa1444120:CDS
GGCGGCAATGGAAGATGCAC+TGG 0.533895 tig0030658:+44669 Msa1444120:intron
CGACACAGCTGGTCGTATGC+AGG 0.535402 tig0030658:+45216 Msa1444120:CDS
ATTCAGGAAGCTTCACGGAA+TGG 0.540152 tig0030658:+45175 Msa1444120:CDS
GGAACAAGGTGAGAGTATGA+TGG 0.543614 tig0030658:+43370 Msa1444120:CDS
TCGAATCCGGTGGTTGTAGG+TGG 0.545919 tig0030658:+42894 Msa1444120:CDS
TGTGCTCAGTATTGCTGGGA+AGG 0.545968 tig0030658:+44255 Msa1444120:intron
GATTCGATCTTGTCTTCTAG+AGG 0.546611 tig0030658:+42605 Msa1444120:CDS
TGTCTTCTAGAGGAGCGATC+TGG 0.547527 tig0030658:+42615 Msa1444120:CDS
GGATTTGAAGAAATCGAATC+CGG 0.550640 tig0030658:+42881 Msa1444120:CDS
CAATCTGGGTGTAGGAGATG+TGG 0.553386 tig0030658:-46173 None:intergenic
AAAATCTACTAATCTTGCTA+AGG 0.553829 tig0030658:+44801 Msa1444120:CDS
CAGGTGACATGGAAGGGAGA+TGG 0.559417 tig0030658:+42930 Msa1444120:CDS
CCGCATCCCACAAACATGAC+TGG 0.559796 tig0030658:-46620 None:intergenic
ACCAGCTTTGAAAGCTCTGA+AGG 0.559926 tig0030658:+44303 Msa1444120:CDS
TTGAGAGAATAAGCAGCTCC+AGG 0.560375 tig0030658:-42663 None:intergenic
AAACAGCAGGTGACATGGAA+GGG 0.561061 tig0030658:+42924 Msa1444120:CDS
GATTATTTGGCTAAGGAACA+AGG 0.566749 tig0030658:+43356 Msa1444120:CDS
GTTATTGTGAATAACGGTAA+CGG 0.570694 tig0030658:+43056 Msa1444120:CDS
CAATTTCATTGCATGACCAG+AGG 0.575171 tig0030658:-42548 None:intergenic
GGATGCTGATAAGGATAGGA+AGG 0.575386 tig0030658:+43331 Msa1444120:CDS
GCAGTTGAAGATTGAAGCTG+AGG 0.579144 tig0030658:+42848 Msa1444120:CDS
AAGATCCCATCAATCAATCT+GGG 0.579799 tig0030658:-46187 None:intergenic
CCATCAATCAATCTGGGTGT+AGG 0.581937 tig0030658:-46181 None:intergenic
GAAGACGCTCCTTAAATGAA+AGG 0.584086 tig0030658:+46688 Msa1444120:exon
TGAAGCTGAGGCTCGTTCTG+AGG 0.584141 tig0030658:+42860 Msa1444120:CDS
ACTTGACGTTGAGTTTCTTG+AGG 0.584980 tig0030658:-46658 None:intergenic
GAAACAGCAGGTGACATGGA+AGG 0.585391 tig0030658:+42923 Msa1444120:CDS
CAATCTGAATAAATTATATG+TGG 0.586190 tig0030658:+47012 Msa1444120:three_prime_UTR
GGGAAGAAGAATGCCAGTGC+TGG 0.586484 tig0030658:+42960 Msa1444120:CDS
CTGATCAAAATCTCGATACA+CGG 0.587720 tig0030658:-42817 None:intergenic
CTACCTTAACAATCCTGACC+TGG 0.587728 tig0030658:+45966 Msa1444120:CDS
TTTGTTGGAGAAGCACTGGT+TGG 0.588986 tig0030658:+45994 Msa1444120:CDS
GGTTATAATTTGAGGAGTAA+CGG 0.590987 tig0030658:+43077 Msa1444120:CDS
ATAGGAAACAGCAGGTGACA+TGG 0.591167 tig0030658:+42919 Msa1444120:CDS
GTTTGAAGAATGACGGTGAT+GGG 0.596520 tig0030658:+42997 Msa1444120:CDS
TGTTAAGCGTGAATTCTCGC+AGG 0.597191 tig0030658:+42776 Msa1444120:CDS
TTTAAGGAGCGTCTTCACAA+TGG 0.598414 tig0030658:-46681 None:intergenic
TGCTTGTGCTCAGTATTGCT+GGG 0.598645 tig0030658:+44251 Msa1444120:intron
CGAATCCGGTGGTTGTAGGT+GGG 0.598863 tig0030658:+42895 Msa1444120:CDS
AGGTGGGAATAGGAAACAGC+AGG 0.600879 tig0030658:+42911 Msa1444120:CDS
AAACATTCGTGACAGGTCAC+AGG 0.602301 tig0030658:-46752 None:intergenic
AATTCTGCATCTGCTCTATG+TGG 0.603688 tig0030658:+42737 Msa1444120:CDS
AAACTGAAAACATTCGTGAC+AGG 0.605467 tig0030658:-46759 None:intergenic
TGAAGAGGATGATGATGATG+AGG 0.607270 tig0030658:+43427 Msa1444120:CDS
TTCATGCTGCAAAAGAGCAA+AGG 0.608654 tig0030658:+44737 Msa1444120:CDS
ATGATGAGGATGATGATGCT+GGG 0.610615 tig0030658:+43441 Msa1444120:CDS
ACACAATGTTAATGTCATGA+TGG 0.611925 tig0030658:+44948 Msa1444120:CDS
GAGAATGATAGTGTAAACAA+TGG 0.612652 tig0030658:+43131 Msa1444120:CDS
ACTCTGTAGGCCAAACTATG+TGG 0.615418 tig0030658:+46815 Msa1444120:three_prime_UTR
GATCGAATCAATGTATCGAT+CGG 0.617091 tig0030658:-42591 None:intergenic
CTTCTCCAACAAATAAGACC+AGG 0.622372 tig0030658:-45984 None:intergenic
GTTGTGCTAGTCGACACAGC+TGG 0.625758 tig0030658:+45205 Msa1444120:CDS
TCTTACAATTACGATGCACC+TGG 0.626789 tig0030658:+42645 Msa1444120:CDS
TCTCGATACACGGTTCTGGT+GGG 0.628791 tig0030658:-42807 None:intergenic
AACAGACGCTGTTGTAACCA+AGG 0.629920 tig0030658:+43214 Msa1444120:CDS
AAGAATGCCAGTGCTGGTGG+TGG 0.631319 tig0030658:+42966 Msa1444120:CDS
GGAAGGGAGATGGATCTGAT+GGG 0.633548 tig0030658:+42940 Msa1444120:CDS
GAAGGCCAATTTGGAGAAGT+CGG 0.633774 tig0030658:+44273 Msa1444120:CDS
GGTTTGAAGAATGACGGTGA+TGG 0.634038 tig0030658:+42996 Msa1444120:CDS
AGAAGGTTAGGAATAAAGGC+GGG 0.636662 tig0030658:+43180 Msa1444120:CDS
CGTTATTCACAATAACAGAA+CGG 0.639458 tig0030658:-43049 None:intergenic
GGCGGTGGTTTGAAGAATGA+CGG 0.640321 tig0030658:+42990 Msa1444120:CDS
TGAGAAGCTATGTGAATCAG+TGG 0.640944 tig0030658:+44484 Msa1444120:CDS
TCAGCTTTCAAAGTTCAACC+AGG 0.642481 tig0030658:+46032 Msa1444120:CDS
AAGAAGAATGCCAGTGCTGG+TGG 0.643037 tig0030658:+42963 Msa1444120:CDS
TGGGTGTAGGAGATGTGGAA+AGG 0.654736 tig0030658:-46168 None:intergenic
TAGACTCATGACCAAGAATG+TGG 0.655583 tig0030658:+44327 Msa1444120:CDS
GGATCATGTTGATGTTGATG+GGG 0.663445 tig0030658:+43310 Msa1444120:CDS
TTTGAAGAAATCGAATCCGG+TGG 0.670497 tig0030658:+42884 Msa1444120:CDS
TCTAGAGGAGCGATCTGGTG+CGG 0.676914 tig0030658:+42620 Msa1444120:CDS
AAGAAGGTTAGGAATAAAGG+CGG 0.679488 tig0030658:+43179 Msa1444120:CDS
AACGCATAAAACCCAAACCC+AGG 0.680999 tig0030658:+42449 Msa1444120:five_prime_UTR
AATATGTCAATAGAACGCCT+AGG 0.693947 tig0030658:-44706 None:intergenic
ACAGAGTAATAGGATTAACA+AGG 0.704852 tig0030658:-46799 None:intergenic
TAGAAACCAAACCTGCACTG+TGG 0.728001 tig0030658:-44555 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTGTATATAAATAAA+AGG - tig0030658:44610-44629 None:intergenic 10.0%
!!! AAGTTTTATTATTTGAGATT+TGG - tig0030658:42367-42386 None:intergenic 15.0%
!!! TTTTGAATTTGTTTGTAATT+AGG + tig0030658:42480-42499 Msa1444120:intron 15.0%
!!! TATTTAACTTGTAATGATAT+TGG + tig0030658:43887-43906 Msa1444120:intron 15.0%
!! ATAAATTAAATTGTTACTCT+TGG + tig0030658:43982-44001 Msa1444120:intron 15.0%
!! ATTGTATATAAATAAAAGGT+CGG - tig0030658:44606-44625 None:intergenic 15.0%
!! TTAATATATCCCAATAAAAA+TGG + tig0030658:46910-46929 Msa1444120:three_prime_UTR 15.0%
!!! TTATTATTTGAGATTTGGTT+AGG - tig0030658:42362-42381 None:intergenic 20.0%
!!! TTTTTCTTAACTACCTTTTT+CGG - tig0030658:43245-43264 None:intergenic 20.0%
!! AAAAGGTAGTTAAGAAAAAT+AGG + tig0030658:43246-43265 Msa1444120:CDS 20.0%
!! AAAGGTAGTTAAGAAAAATA+GGG + tig0030658:43247-43266 Msa1444120:CDS 20.0%
!! AAAATCTAACTTAGTTTCAA+CGG - tig0030658:43288-43307 None:intergenic 20.0%
!!! TGAAACTAAGTTAGATTTTA+CGG + tig0030658:43289-43308 Msa1444120:CDS 20.0%
!!! AAACAATAAAAGTATTGTCA+AGG - tig0030658:43737-43756 None:intergenic 20.0%
!!! CAAAAGTTTATTGGTTTTAT+GGG + tig0030658:45263-45282 Msa1444120:intron 20.0%
!!! AAAAGTTTATTGGTTTTATG+GGG + tig0030658:45264-45283 Msa1444120:intron 20.0%
!!! AATGAACCTTTTATGTTTAT+TGG + tig0030658:45785-45804 Msa1444120:intron 20.0%
!! TCAATTCCAATAAACATAAA+AGG - tig0030658:45794-45813 None:intergenic 20.0%
!!! TTTTATGTTTATTGGAATTG+AGG + tig0030658:45793-45812 Msa1444120:intron 20.0%
!! TATTCTTGATGAACATTTAT+TGG + tig0030658:46297-46316 Msa1444120:intron 20.0%
!! TAATCATTACCCATATTAAA+TGG - tig0030658:46343-46362 None:intergenic 20.0%
!!! TAATTATGTTTGATTTTGTC+AGG + tig0030658:46559-46578 Msa1444120:intron 20.0%
!!! AACAGAAAACCATTTTTATT+GGG - tig0030658:46922-46941 None:intergenic 20.0%
!!! AAACAGAAAACCATTTTTAT+TGG - tig0030658:46923-46942 None:intergenic 20.0%
!! CAATCTGAATAAATTATATG+TGG + tig0030658:47012-47031 Msa1444120:three_prime_UTR 20.0%
! TAGTTAAGAAAAATAGGGTT+TGG + tig0030658:43252-43271 Msa1444120:CDS 25.0%
! AGTTAAGAAAAATAGGGTTT+GGG + tig0030658:43253-43272 Msa1444120:CDS 25.0%
! AAATCTAACTTAGTTTCAAC+GGG - tig0030658:43287-43306 None:intergenic 25.0%
! AGTGTTATATTTCCTTGAAT+TGG + tig0030658:43674-43693 Msa1444120:intron 25.0%
! AGACAAAAAAATCCAATTCA+AGG - tig0030658:43689-43708 None:intergenic 25.0%
! TAAGACATATGTGCATTATT+AGG + tig0030658:43854-43873 Msa1444120:intron 25.0%
! ATAAATACATACCACATTCT+TGG - tig0030658:44341-44360 None:intergenic 25.0%
!!! CTGCATTATTTTTCAAAACA+CGG - tig0030658:44650-44669 None:intergenic 25.0%
! AAAATCTACTAATCTTGCTA+AGG + tig0030658:44801-44820 Msa1444120:CDS 25.0%
! TTGTTGAAGCAAAAGTTTAT+TGG + tig0030658:45254-45273 Msa1444120:intron 25.0%
!!! GCAAAAGTTTATTGGTTTTA+TGG + tig0030658:45262-45281 Msa1444120:intron 25.0%
!!! AAAGTTTATTGGTTTTATGG+GGG + tig0030658:45265-45284 Msa1444120:intron 25.0%
!! AATACTATTGGTTATCTGTT+AGG + tig0030658:45310-45329 Msa1444120:intron 25.0%
! TTCGTTAGTCAATATAAAAC+CGG - tig0030658:45351-45370 None:intergenic 25.0%
!!! GTTTTATATTGACTAACGAA+AGG + tig0030658:45351-45370 Msa1444120:intron 25.0%
!!! TTACTAACTTCTAGAATGAA+TGG + tig0030658:45469-45488 Msa1444120:intron 25.0%
! TAGAATGAATGGATATTAAG+TGG + tig0030658:45480-45499 Msa1444120:intron 25.0%
! GAATAAGTGCATAAAAGATT+GGG - tig0030658:45518-45537 None:intergenic 25.0%
! GTTTCTGCAACAAAATAAAT+GGG - tig0030658:46141-46160 None:intergenic 25.0%
! AGTTTCTGCAACAAAATAAA+TGG - tig0030658:46142-46161 None:intergenic 25.0%
!!! ATTTATTTTGTTGCAGAAAC+TGG + tig0030658:46141-46160 Msa1444120:intron 25.0%
! CAACTTTGCAAGTAAATTTA+TGG + tig0030658:46261-46280 Msa1444120:intron 25.0%
! TAAATTTATGGCTAAGCATT+TGG + tig0030658:46273-46292 Msa1444120:intron 25.0%
! ACTAGCAAAGACAAAATAAA+GGG - tig0030658:46454-46473 None:intergenic 25.0%
! AACTAGCAAAGACAAAATAA+AGG - tig0030658:46455-46474 None:intergenic 25.0%
! TAGTTTCATCCTTTCATTTA+AGG - tig0030658:46700-46719 None:intergenic 25.0%
!!! GGATGAAACTATTTTAGTTT+CGG + tig0030658:46709-46728 Msa1444120:three_prime_UTR 25.0%
!! AGTTTTCCAAGATAGATAAA+GGG - tig0030658:46891-46910 None:intergenic 25.0%
!! AAGTTTTCCAAGATAGATAA+AGG - tig0030658:46892-46911 None:intergenic 25.0%
!!! GTTTTAAATTGCTATGAAGA+GGG + tig0030658:46982-47001 Msa1444120:three_prime_UTR 25.0%
CGTTATTCACAATAACAGAA+CGG - tig0030658:43052-43071 None:intergenic 30.0%
CGTTCTGTTATTGTGAATAA+CGG + tig0030658:43050-43069 Msa1444120:CDS 30.0%
GTTATTGTGAATAACGGTAA+CGG + tig0030658:43056-43075 Msa1444120:CDS 30.0%
GGTTATAATTTGAGGAGTAA+CGG + tig0030658:43077-43096 Msa1444120:CDS 30.0%
!! GTTGGTAATGTTAGTGTAAA+TGG + tig0030658:43104-43123 Msa1444120:CDS 30.0%
! GAGAATGATAGTGTAAACAA+TGG + tig0030658:43131-43150 Msa1444120:CDS 30.0%
! ATGGAGCTTTTGATGTAAAT+AGG + tig0030658:43150-43169 Msa1444120:CDS 30.0%
TAATGATGATTTACTGCAAG+TGG + tig0030658:43763-43782 Msa1444120:intron 30.0%
AATTACACTCTAAACTTCCT+TGG + tig0030658:43799-43818 Msa1444120:intron 30.0%
ATTACACTCTAAACTTCCTT+GGG + tig0030658:43800-43819 Msa1444120:intron 30.0%
ATGAATAAGATTTCAACCCA+AGG - tig0030658:43819-43838 None:intergenic 30.0%
! AAAAACTGGCTTCATTTACA+AGG + tig0030658:44525-44544 Msa1444120:CDS 30.0%
!!! CGTGTTTTGAAAAATAATGC+AGG + tig0030658:44648-44667 Msa1444120:intron 30.0%
!!! GTTTTGAAAAATAATGCAGG+CGG + tig0030658:44651-44670 Msa1444120:intron 30.0%
CCAACAAATACAACAACATA+TGG - tig0030658:44766-44785 None:intergenic 30.0%
CCATATGTTGTTGTATTTGT+TGG + tig0030658:44763-44782 Msa1444120:CDS 30.0%
! GTTGTATTTGTTGGAGTTAA+TGG + tig0030658:44772-44791 Msa1444120:CDS 30.0%
TATGTAAAAATTCCGTACGT+CGG + tig0030658:44854-44873 Msa1444120:intron 30.0%
ACACAATGTTAATGTCATGA+TGG + tig0030658:44948-44967 Msa1444120:CDS 30.0%
TCAAATATAGGGATCTGAAA+GGG - tig0030658:45112-45131 None:intergenic 30.0%
CATAACCCTTCTCAAATATA+GGG - tig0030658:45123-45142 None:intergenic 30.0%
TCATAACCCTTCTCAAATAT+AGG - tig0030658:45124-45143 None:intergenic 30.0%
ACCAAATGACTCAATACTAT+TGG + tig0030658:45298-45317 Msa1444120:intron 30.0%
! ACCAATAGTATTGAGTCATT+TGG - tig0030658:45302-45321 None:intergenic 30.0%
TATAAAACCGGTATTAATCC+CGG - tig0030658:45339-45358 None:intergenic 30.0%
AGTAACTGTTTCATTCAGTT+AGG - tig0030658:45454-45473 None:intergenic 30.0%
GGAATAAGTGCATAAAAGAT+TGG - tig0030658:45519-45538 None:intergenic 30.0%
TTAGAGGTTCCATTTCTTAA+GGG - tig0030658:45552-45571 None:intergenic 30.0%
ATTAGAGGTTCCATTTCTTA+AGG - tig0030658:45553-45572 None:intergenic 30.0%
GGAAAATTGTCATAGTTGAA+TGG + tig0030658:45814-45833 Msa1444120:intron 30.0%
! TTGTCATAGTTGAATGGTTT+TGG + tig0030658:45820-45839 Msa1444120:intron 30.0%
TGAATAAATTGAACCTAACC+TGG - tig0030658:46053-46072 None:intergenic 30.0%
ATGATAAGGTATGCAAATAC+TGG + tig0030658:46233-46252 Msa1444120:intron 30.0%
CTTGATGAACATTTATTGGT+TGG + tig0030658:46301-46320 Msa1444120:intron 30.0%
AAAGACAAAATAAAGGGAAG+GGG - tig0030658:46448-46467 None:intergenic 30.0%
CAAAGACAAAATAAAGGGAA+GGG - tig0030658:46449-46468 None:intergenic 30.0%
! CTATTTCTTGCGAATGAAAT+TGG - tig0030658:46506-46525 None:intergenic 30.0%
!! TTATGTTTGATTTTGTCAGG+TGG + tig0030658:46562-46581 Msa1444120:intron 30.0%
!! TATGTTTGATTTTGTCAGGT+GGG + tig0030658:46563-46582 Msa1444120:intron 30.0%
CTTTCAATGGTTTACATATC+TGG + tig0030658:46593-46612 Msa1444120:CDS 30.0%
ACAGAGTAATAGGATTAACA+AGG - tig0030658:46802-46821 None:intergenic 30.0%
TGTTAATCCTATTACTCTGT+AGG + tig0030658:46802-46821 Msa1444120:three_prime_UTR 30.0%
!!! GCAGTTTGGTTTGTTTATTT+TGG + tig0030658:46852-46871 Msa1444120:three_prime_UTR 30.0%
! TTTTCCAAGATAGATAAAGG+GGG - tig0030658:46889-46908 None:intergenic 30.0%
! GTTTTCCAAGATAGATAAAG+GGG - tig0030658:46890-46909 None:intergenic 30.0%
!! CGTTTTAAATTGCTATGAAG+AGG + tig0030658:46981-47000 Msa1444120:three_prime_UTR 30.0%
AATTCAAAATCGCGTTACCT+GGG - tig0030658:42469-42488 None:intergenic 35.0%
AAATTCAAAATCGCGTTACC+TGG - tig0030658:42470-42489 None:intergenic 35.0%
!!! CAGTTACTGATTTTCACAAG+AGG + tig0030658:42516-42535 Msa1444120:CDS 35.0%
!!! TTACTGATTTTCACAAGAGG+AGG + tig0030658:42519-42538 Msa1444120:CDS 35.0%
! GATCGAATCAATGTATCGAT+CGG - tig0030658:42594-42613 None:intergenic 35.0%
! TGGACTTTTCACAATGATCT+AGG + tig0030658:42687-42706 Msa1444120:CDS 35.0%
CTGATCAAAATCTCGATACA+CGG - tig0030658:42820-42839 None:intergenic 35.0%
GGATTTGAAGAAATCGAATC+CGG + tig0030658:42881-42900 Msa1444120:CDS 35.0%
! ACGGTAACGGTTATAATTTG+AGG + tig0030658:43069-43088 Msa1444120:CDS 35.0%
CTTTATTCCTAACCTTCTTC+TGG - tig0030658:43178-43197 None:intergenic 35.0%
CAGAAGAAGGTTAGGAATAA+AGG + tig0030658:43176-43195 Msa1444120:CDS 35.0%
AAGAAGGTTAGGAATAAAGG+CGG + tig0030658:43179-43198 Msa1444120:CDS 35.0%
! GGATAGGAAGGTTGATTATT+TGG + tig0030658:43343-43362 Msa1444120:CDS 35.0%
! GAAGGTTGATTATTTGGCTA+AGG + tig0030658:43349-43368 Msa1444120:CDS 35.0%
GATTATTTGGCTAAGGAACA+AGG + tig0030658:43356-43375 Msa1444120:CDS 35.0%
!!! GATTTTTAGTAGTGACAGTG+AGG + tig0030658:43403-43422 Msa1444120:CDS 35.0%
AAGCCTGATGCTAAAAAGAA+GGG + tig0030658:43473-43492 Msa1444120:CDS 35.0%
AACATCAATCGGAATCTATG+AGG - tig0030658:43633-43652 None:intergenic 35.0%
TCAAGCAACACAACATCAAT+CGG - tig0030658:43644-43663 None:intergenic 35.0%
GCACATATGTCTTAAAGCAA+AGG - tig0030658:43848-43867 None:intergenic 35.0%
TTGGTATTCGTTTGAAAGTC+AGG + tig0030658:43906-43925 Msa1444120:intron 35.0%
ATTCGTTTGAAAGTCAGGAA+AGG + tig0030658:43911-43930 Msa1444120:intron 35.0%
CAATCAAAGCAACATGTAAG+AGG - tig0030658:44022-44041 None:intergenic 35.0%
TCACAAGGAAAATGGAAACA+GGG - tig0030658:44072-44091 None:intergenic 35.0%
! TGTTTCCATTTTCCTTGTGA+CGG + tig0030658:44072-44091 Msa1444120:intron 35.0%
TCAATCAAAGTAGCAGATCA+AGG - tig0030658:44138-44157 None:intergenic 35.0%
ATCCTCAACATCATTAGATG+TGG + tig0030658:44359-44378 Msa1444120:intron 35.0%
!! TTACATTCTGTGTCACTTGT+AGG + tig0030658:44448-44467 Msa1444120:intron 35.0%
AAGTCTTGAAGGCAAAAAAC+TGG + tig0030658:44511-44530 Msa1444120:CDS 35.0%
!!! TGGTTCGTATTTTAACTCCT+AGG + tig0030658:44689-44708 Msa1444120:CDS 35.0%
AATATGTCAATAGAACGCCT+AGG - tig0030658:44709-44728 None:intergenic 35.0%
GCGTTCTATTGACATATTGA+GGG + tig0030658:44711-44730 Msa1444120:CDS 35.0%
TTTGTTGGAGTTAATGGAGT+TGG + tig0030658:44778-44797 Msa1444120:CDS 35.0%
TACTAATCTTGCTAAGGTGA+AGG + tig0030658:44807-44826 Msa1444120:intron 35.0%
ATGTAAAAATTCCGTACGTC+GGG + tig0030658:44855-44874 Msa1444120:intron 35.0%
GAAAATGGAATATCTCCTTC+AGG - tig0030658:44893-44912 None:intergenic 35.0%
CTGCATAATCACACAGAAAA+TGG - tig0030658:44908-44927 None:intergenic 35.0%
! CATTTTCTGTGTGATTATGC+AGG + tig0030658:44906-44925 Msa1444120:intron 35.0%
ATCTGAAAGGGGGAATTATA+AGG - tig0030658:45100-45119 None:intergenic 35.0%
AAATATAGGGATCTGAAAGG+GGG - tig0030658:45110-45129 None:intergenic 35.0%
CAAATATAGGGATCTGAAAG+GGG - tig0030658:45111-45130 None:intergenic 35.0%
CTCAAATATAGGGATCTGAA+AGG - tig0030658:45113-45132 None:intergenic 35.0%
TCAGATCCCTATATTTGAGA+AGG + tig0030658:45114-45133 Msa1444120:intron 35.0%
CAGATCCCTATATTTGAGAA+GGG + tig0030658:45115-45134 Msa1444120:intron 35.0%
ATAAAACCGGTATTAATCCC+GGG - tig0030658:45338-45357 None:intergenic 35.0%
AACTGTTTCATTCAGTTAGG+CGG - tig0030658:45451-45470 None:intergenic 35.0%
AAGTGCATAAAAGATTGGGA+GGG - tig0030658:45514-45533 None:intergenic 35.0%
TAAGTGCATAAAAGATTGGG+AGG - tig0030658:45515-45534 None:intergenic 35.0%
TTTCTTAAGGGGATTCTGTT+AGG - tig0030658:45540-45559 None:intergenic 35.0%
AACAGAATCCCCTTAAGAAA+TGG + tig0030658:45540-45559 Msa1444120:intron 35.0%
TAGAGGTTCCATTTCTTAAG+GGG - tig0030658:45551-45570 None:intergenic 35.0%
TTCATGGCCCATTTCATTAT+TGG + tig0030658:45701-45720 Msa1444120:intron 35.0%
TCATGGCCCATTTCATTATT+GGG + tig0030658:45702-45721 Msa1444120:intron 35.0%
CTATCACTGTTTCAGTTTCT+AGG + tig0030658:45735-45754 Msa1444120:intron 35.0%
TTCATCTTACATGTCACTGA+TGG + tig0030658:45898-45917 Msa1444120:intron 35.0%
TTTCAAAGTTCAACCAGGTT+AGG + tig0030658:46037-46056 Msa1444120:intron 35.0%
!! TAGCTTTGTCCAACTACAAT+TGG + tig0030658:46077-46096 Msa1444120:intron 35.0%
! AGCTTTGTCCAACTACAATT+GGG + tig0030658:46078-46097 Msa1444120:intron 35.0%
GGGTTCAATAACAGACTTAT+GGG - tig0030658:46121-46140 None:intergenic 35.0%
TGGGTTCAATAACAGACTTA+TGG - tig0030658:46122-46141 None:intergenic 35.0%
AAGATCCCATCAATCAATCT+GGG - tig0030658:46190-46209 None:intergenic 35.0%
! GTTCGACACTATTGATGATA+AGG + tig0030658:46219-46238 Msa1444120:CDS 35.0%
! TGAACATTTATTGGTTGGCT+AGG + tig0030658:46306-46325 Msa1444120:intron 35.0%
GGAGACTGTCCATTTAATAT+GGG + tig0030658:46331-46350 Msa1444120:intron 35.0%
ATTCATTCGATGCTTTCTTG+TGG - tig0030658:46383-46402 None:intergenic 35.0%
TGAGATGGAAACAAAATCAG+CGG - tig0030658:46411-46430 None:intergenic 35.0%
AAGACAAAATAAAGGGAAGG+GGG - tig0030658:46447-46466 None:intergenic 35.0%
GCAAAGACAAAATAAAGGGA+AGG - tig0030658:46450-46469 None:intergenic 35.0%
AAACTGAAAACATTCGTGAC+AGG - tig0030658:46762-46781 None:intergenic 35.0%
AAAGTCATAGCCACATAGTT+TGG - tig0030658:46828-46847 None:intergenic 35.0%
AAACTATGTGGCTATGACTT+TGG + tig0030658:46827-46846 Msa1444120:three_prime_UTR 35.0%
!! GGGTTTTATGCGTTTTGTTG+AGG - tig0030658:42443-42462 None:intergenic 40.0%
CAATTTCATTGCATGACCAG+AGG - tig0030658:42551-42570 None:intergenic 40.0%
CTCTGGTCATGCAATGAAAT+TGG + tig0030658:42549-42568 Msa1444120:CDS 40.0%
! GAAATTGGCAACGCTTTGAA+AGG + tig0030658:42564-42583 Msa1444120:CDS 40.0%
GATTCGATCTTGTCTTCTAG+AGG + tig0030658:42605-42624 Msa1444120:CDS 40.0%
TCTTACAATTACGATGCACC+TGG + tig0030658:42645-42664 Msa1444120:CDS 40.0%
GAGCTGCTTATTCTCTCAAA+TGG + tig0030658:42667-42686 Msa1444120:CDS 40.0%
AATTCTGCATCTGCTCTATG+TGG + tig0030658:42737-42756 Msa1444120:CDS 40.0%
AAAATCTCGATACACGGTTC+TGG - tig0030658:42814-42833 None:intergenic 40.0%
TTTGAAGAAATCGAATCCGG+TGG + tig0030658:42884-42903 Msa1444120:CDS 40.0%
GTTTGAAGAATGACGGTGAT+GGG + tig0030658:42997-43016 Msa1444120:CDS 40.0%
!! AATGACGGTGATGGGAAAAA+TGG + tig0030658:43005-43024 Msa1444120:CDS 40.0%
!! ATGACGGTGATGGGAAAAAT+GGG + tig0030658:43006-43025 Msa1444120:CDS 40.0%
TGTAAATAGGCTCCAGAAGA+AGG + tig0030658:43163-43182 Msa1444120:CDS 40.0%
AGAAGGTTAGGAATAAAGGC+GGG + tig0030658:43180-43199 Msa1444120:CDS 40.0%
ACGGATCATGTTGATGTTGA+TGG + tig0030658:43308-43327 Msa1444120:CDS 40.0%
CGGATCATGTTGATGTTGAT+GGG + tig0030658:43309-43328 Msa1444120:CDS 40.0%
GGATCATGTTGATGTTGATG+GGG + tig0030658:43310-43329 Msa1444120:CDS 40.0%
! TGAAGAGGATGATGATGATG+AGG + tig0030658:43427-43446 Msa1444120:CDS 40.0%
! ATGATGAGGATGATGATGCT+GGG + tig0030658:43441-43460 Msa1444120:CDS 40.0%
CAAGCCTGATGCTAAAAAGA+AGG + tig0030658:43472-43491 Msa1444120:CDS 40.0%
!! CAACCCTTCTTTTTAGCATC+AGG - tig0030658:43479-43498 None:intergenic 40.0%
CTGATGCTAAAAAGAAGGGT+TGG + tig0030658:43477-43496 Msa1444120:CDS 40.0%
! GGTTTTCATCTATGTTCCAG+AGG + tig0030658:43498-43517 Msa1444120:CDS 40.0%
AAGTTCAGCAAGTTTACCTC+TGG - tig0030658:43517-43536 None:intergenic 40.0%
TGATGATTTACTGCAAGTGG+TGG + tig0030658:43766-43785 Msa1444120:intron 40.0%
GTCACAAGGAAAATGGAAAC+AGG - tig0030658:44073-44092 None:intergenic 40.0%
TAGACTCATGACCAAGAATG+TGG + tig0030658:44327-44346 Msa1444120:CDS 40.0%
CACCACATCTAATGATGTTG+AGG - tig0030658:44364-44383 None:intergenic 40.0%
CTCAACATCATTAGATGTGG+TGG + tig0030658:44362-44381 Msa1444120:intron 40.0%
TGAGAAGCTATGTGAATCAG+TGG + tig0030658:44484-44503 Msa1444120:CDS 40.0%
AAAAATAATGCAGGCGGCAA+TGG + tig0030658:44657-44676 Msa1444120:intron 40.0%
GGCGTTCTATTGACATATTG+AGG + tig0030658:44710-44729 Msa1444120:CDS 40.0%
TTCATGCTGCAAAAGAGCAA+AGG + tig0030658:44737-44756 Msa1444120:CDS 40.0%
TGATTATGCAGGTTGCTTAC+TGG + tig0030658:44917-44936 Msa1444120:intron 40.0%
GCTTGTGATACATTTCGATC+AGG + tig0030658:44973-44992 Msa1444120:CDS 40.0%
TGAAAAAGATCCTGCTGTTG+TGG + tig0030658:45141-45160 Msa1444120:CDS 40.0%
TGTGGCAAAAGAAGCAATTC+AGG + tig0030658:45159-45178 Msa1444120:CDS 40.0%
AAGCAATTCAGGAAGCTTCA+CGG + tig0030658:45170-45189 Msa1444120:CDS 40.0%
TTGGTTATCTGTTAGGAACC+CGG + tig0030658:45317-45336 Msa1444120:intron 40.0%
AAATTGAGCCACGCTCTTAT+AGG + tig0030658:45374-45393 Msa1444120:intron 40.0%
AGTAGGATATTCCTCTCTGA+AGG - tig0030658:45428-45447 None:intergenic 40.0%
AGAAGACTTAAGAGAGCTGA+TGG - tig0030658:45589-45608 None:intergenic 40.0%
! TTGGAGGGTATACTCTATAC+TGG - tig0030658:45643-45662 None:intergenic 40.0%
AGTATAGAGTATACCCTCCA+AGG + tig0030658:45642-45661 Msa1444120:intron 40.0%
TAATGAAATGGGCCATGAAG+AGG - tig0030658:45700-45719 None:intergenic 40.0%
CTGGAGCCCAATAATGAAAT+GGG - tig0030658:45711-45730 None:intergenic 40.0%
! TCTGGAGCCCAATAATGAAA+TGG - tig0030658:45712-45731 None:intergenic 40.0%
GTACTATCTCTTGACAGCAA+AGG - tig0030658:45761-45780 None:intergenic 40.0%
! ACATGTCACTGATGGTTTTC+AGG + tig0030658:45906-45925 Msa1444120:intron 40.0%
TTTGACAGTGCTCTCATCAA+TGG - tig0030658:45940-45959 None:intergenic 40.0%
CTTCTCCAACAAATAAGACC+AGG - tig0030658:45987-46006 None:intergenic 40.0%
! CTTATTTGTTGGAGAAGCAC+TGG + tig0030658:45990-46009 Msa1444120:CDS 40.0%
TCAGCTTTCAAAGTTCAACC+AGG + tig0030658:46032-46051 Msa1444120:CDS 40.0%
CTACACCCAGATTGATTGAT+GGG + tig0030658:46182-46201 Msa1444120:CDS 40.0%
CAAGATCCCATCAATCAATC+TGG - tig0030658:46191-46210 None:intergenic 40.0%
! CATTTATTGGTTGGCTAGGA+CGG + tig0030658:46310-46329 Msa1444120:intron 40.0%
CGGAGACTGTCCATTTAATA+TGG + tig0030658:46330-46349 Msa1444120:intron 40.0%
ACTTGACGTTGAGTTTCTTG+AGG - tig0030658:46661-46680 None:intergenic 40.0%
!! TTTAAGGAGCGTCTTCACAA+TGG - tig0030658:46684-46703 None:intergenic 40.0%
GAAGACGCTCCTTAAATGAA+AGG + tig0030658:46688-46707 Msa1444120:exon 40.0%
AGTTTGGCCTACAGAGTAAT+AGG - tig0030658:46812-46831 None:intergenic 40.0%
CTATGACTTTGGATGCAGTT+TGG + tig0030658:46838-46857 Msa1444120:three_prime_UTR 40.0%
TCTTCCCCCTTTATCTATCT+TGG + tig0030658:46882-46901 Msa1444120:three_prime_UTR 40.0%
AACGCATAAAACCCAAACCC+AGG + tig0030658:42449-42468 Msa1444120:five_prime_UTR 45.0%
AAATCGCGTTACCTGGGTTT+GGG - tig0030658:42463-42482 None:intergenic 45.0%
AAAATCGCGTTACCTGGGTT+TGG - tig0030658:42464-42483 None:intergenic 45.0%
CAAGAGGAGGATTAATCCTC+TGG + tig0030658:42532-42551 Msa1444120:CDS 45.0%
TTGAGAGAATAAGCAGCTCC+AGG - tig0030658:42666-42685 None:intergenic 45.0%
TGTTAAGCGTGAATTCTCGC+AGG + tig0030658:42776-42795 Msa1444120:CDS 45.0%
GCAGTTGAAGATTGAAGCTG+AGG + tig0030658:42848-42867 Msa1444120:CDS 45.0%
AAATCGAATCCGGTGGTTGT+AGG + tig0030658:42891-42910 Msa1444120:CDS 45.0%
ATAGGAAACAGCAGGTGACA+TGG + tig0030658:42919-42938 Msa1444120:CDS 45.0%
AAACAGCAGGTGACATGGAA+GGG + tig0030658:42924-42943 Msa1444120:CDS 45.0%
GGTTTGAAGAATGACGGTGA+TGG + tig0030658:42996-43015 Msa1444120:CDS 45.0%
!! TTGAGGAGTAACGGTGTTGT+TGG + tig0030658:43086-43105 Msa1444120:CDS 45.0%
ATAGGCTCCAGAAGAAGGTT+AGG + tig0030658:43168-43187 Msa1444120:CDS 45.0%
GTTAGGAATAAAGGCGGGAA+TGG + tig0030658:43185-43204 Msa1444120:CDS 45.0%
AACAGACGCTGTTGTAACCA+AGG + tig0030658:43214-43233 Msa1444120:CDS 45.0%
! TGTTGATGGGGATGCTGATA+AGG + tig0030658:43322-43341 Msa1444120:CDS 45.0%
ATGGGGATGCTGATAAGGAT+AGG + tig0030658:43327-43346 Msa1444120:CDS 45.0%
GGATGCTGATAAGGATAGGA+AGG + tig0030658:43331-43350 Msa1444120:CDS 45.0%
! GGAACAAGGTGAGAGTATGA+TGG + tig0030658:43370-43389 Msa1444120:CDS 45.0%
TAGTGACAGTGAGGATGAAG+AGG + tig0030658:43412-43431 Msa1444120:CDS 45.0%
! GATGATGAGGATGATGATGC+TGG + tig0030658:43440-43459 Msa1444120:CDS 45.0%
!! GAAAGTCAGGAAAGGTGTTG+AGG + tig0030658:43919-43938 Msa1444120:intron 45.0%
CGATACCGTCACAAGGAAAA+TGG - tig0030658:44080-44099 None:intergenic 45.0%
ATGCTTGTGCTCAGTATTGC+TGG + tig0030658:44250-44269 Msa1444120:intron 45.0%
TGCTTGTGCTCAGTATTGCT+GGG + tig0030658:44251-44270 Msa1444120:intron 45.0%
TATTGCTGGGAAGGCCAATT+TGG + tig0030658:44264-44283 Msa1444120:CDS 45.0%
GAAGGCCAATTTGGAGAAGT+CGG + tig0030658:44273-44292 Msa1444120:CDS 45.0%
CAAGTCCGACTTCTCCAAAT+TGG - tig0030658:44281-44300 None:intergenic 45.0%
CAATTTGGAGAAGTCGGACT+TGG + tig0030658:44279-44298 Msa1444120:CDS 45.0%
!! ACCAGCTTTGAAAGCTCTGA+AGG + tig0030658:44303-44322 Msa1444120:CDS 45.0%
TCCTTCAGAGCTTTCAAAGC+TGG - tig0030658:44307-44326 None:intergenic 45.0%
AAGGATATCTTCCACAGTGC+AGG + tig0030658:44544-44563 Msa1444120:CDS 45.0%
TATCTTCCACAGTGCAGGTT+TGG + tig0030658:44549-44568 Msa1444120:intron 45.0%
TAGAAACCAAACCTGCACTG+TGG - tig0030658:44558-44577 None:intergenic 45.0%
GTCGGCATCAAATGTCGATA+GGG - tig0030658:44588-44607 None:intergenic 45.0%
TAAAAAGCAAGCCCGACGTA+CGG - tig0030658:44869-44888 None:intergenic 45.0%
!!! GGGCTTGCTTTTTAACCTGA+AGG + tig0030658:44875-44894 Msa1444120:intron 45.0%
ATTCAGGAAGCTTCACGGAA+TGG + tig0030658:45175-45194 Msa1444120:CDS 45.0%
TGGTTATCTGTTAGGAACCC+GGG + tig0030658:45318-45337 Msa1444120:intron 45.0%
TAGGAACCCGGGATTAATAC+CGG + tig0030658:45329-45348 Msa1444120:intron 45.0%
! GTTGCTTTCCTATAAGAGCG+TGG - tig0030658:45385-45404 None:intergenic 45.0%
TTCATTCAGTTAGGCGGAGT+AGG - tig0030658:45445-45464 None:intergenic 45.0%
TAAAAGATTGGGAGGGTAGC+TGG - tig0030658:45507-45526 None:intergenic 45.0%
GGTTAATGACGTGGCATTAG+AGG - tig0030658:45568-45587 None:intergenic 45.0%
AGAGCTGATGGTTAATGACG+TGG - tig0030658:45577-45596 None:intergenic 45.0%
!! CTTCTAGAGTATACCCTCCA+AGG + tig0030658:45604-45623 Msa1444120:intron 45.0%
AGAGTATACCCTCCAAGGTT+TGG + tig0030658:45609-45628 Msa1444120:intron 45.0%
GAGTATACCCTCCAAGGTTT+GGG + tig0030658:45610-45629 Msa1444120:intron 45.0%
GAGGATCAGATTGTGGATAC+TGG - tig0030658:45681-45700 None:intergenic 45.0%
CCATGAAGAGGATCAGATTG+TGG - tig0030658:45688-45707 None:intergenic 45.0%
CCACAATCTGATCCTCTTCA+TGG + tig0030658:45685-45704 Msa1444120:intron 45.0%
CTGAAACAGTGATAGAGCTC+TGG - tig0030658:45730-45749 None:intergenic 45.0%
CTACCTTAACAATCCTGACC+TGG + tig0030658:45966-45985 Msa1444120:CDS 45.0%
AGACCAGGTCAGGATTGTTA+AGG - tig0030658:45972-45991 None:intergenic 45.0%
CCAACAAATAAGACCAGGTC+AGG - tig0030658:45982-46001 None:intergenic 45.0%
!! CCTGACCTGGTCTTATTTGT+TGG + tig0030658:45979-45998 Msa1444120:CDS 45.0%
!! TTTGTTGGAGAAGCACTGGT+TGG + tig0030658:45994-46013 Msa1444120:CDS 45.0%
GACGAAGACCCAATTGTAGT+TGG - tig0030658:46089-46108 None:intergenic 45.0%
CCATCAATCAATCTGGGTGT+AGG - tig0030658:46184-46203 None:intergenic 45.0%
CCTACACCCAGATTGATTGA+TGG + tig0030658:46181-46200 Msa1444120:CDS 45.0%
GAGTTTCTTGAGGTCGGTAT+AGG - tig0030658:46651-46670 None:intergenic 45.0%
GACGTTGAGTTTCTTGAGGT+CGG - tig0030658:46657-46676 None:intergenic 45.0%
AAACATTCGTGACAGGTCAC+AGG - tig0030658:46755-46774 None:intergenic 45.0%
ACTCTGTAGGCCAAACTATG+TGG + tig0030658:46815-46834 Msa1444120:three_prime_UTR 45.0%
! TGTCTTCTAGAGGAGCGATC+TGG + tig0030658:42615-42634 Msa1444120:CDS 50.0%
! TCTCGATACACGGTTCTGGT+GGG - tig0030658:42810-42829 None:intergenic 50.0%
! ATCTCGATACACGGTTCTGG+TGG - tig0030658:42811-42830 None:intergenic 50.0%
CTATTCCCACCTACAACCAC+CGG - tig0030658:42903-42922 None:intergenic 50.0%
AGGTGGGAATAGGAAACAGC+AGG + tig0030658:42911-42930 Msa1444120:CDS 50.0%
GAAACAGCAGGTGACATGGA+AGG + tig0030658:42923-42942 Msa1444120:CDS 50.0%
TGGAAGGGAGATGGATCTGA+TGG + tig0030658:42939-42958 Msa1444120:CDS 50.0%
GGAAGGGAGATGGATCTGAT+GGG + tig0030658:42940-42959 Msa1444120:CDS 50.0%
! AAGAAGAATGCCAGTGCTGG+TGG + tig0030658:42963-42982 Msa1444120:CDS 50.0%
GGCGGTGGTTTGAAGAATGA+CGG + tig0030658:42990-43009 Msa1444120:CDS 50.0%
AACCAAGGCTGAGCCGAAAA+AGG + tig0030658:43229-43248 Msa1444120:CDS 50.0%
!!! TACCTTTTTCGGCTCAGCCT+TGG - tig0030658:43234-43253 None:intergenic 50.0%
!! TCAGGAAAGGTGTTGAGGTC+AGG + tig0030658:43924-43943 Msa1444120:intron 50.0%
!! CAGGAAAGGTGTTGAGGTCA+GGG + tig0030658:43925-43944 Msa1444120:intron 50.0%
!! AGGAAAGGTGTTGAGGTCAG+GGG + tig0030658:43926-43945 Msa1444120:intron 50.0%
! GTTGAGGTCAGGGGCATATA+TGG + tig0030658:43935-43954 Msa1444120:intron 50.0%
TCCTTGTGACGGTATCGTCT+TGG + tig0030658:44083-44102 Msa1444120:intron 50.0%
CCTTGTGACGGTATCGTCTT+GGG + tig0030658:44084-44103 Msa1444120:intron 50.0%
TGTGCTCAGTATTGCTGGGA+AGG + tig0030658:44255-44274 Msa1444120:intron 50.0%
!! TCTGTGTCACTTGTAGGCTG+AGG + tig0030658:44454-44473 Msa1444120:intron 50.0%
TCAGTGGCTGCAAGTCTTGA+AGG + tig0030658:44500-44519 Msa1444120:CDS 50.0%
GGTCGGCATCAAATGTCGAT+AGG - tig0030658:44589-44608 None:intergenic 50.0%
! GCTTCTTTTGCCACAACAGC+AGG - tig0030658:45154-45173 None:intergenic 50.0%
GGAAGCTTCACGGAATGGTT+CGG + tig0030658:45180-45199 Msa1444120:CDS 50.0%
! ATTCCTCTCTGAAGGAGCCT+TGG - tig0030658:45420-45439 None:intergenic 50.0%
TGGGTGTAGGAGATGTGGAA+AGG - tig0030658:46171-46190 None:intergenic 50.0%
CAATCTGGGTGTAGGAGATG+TGG - tig0030658:46176-46195 None:intergenic 50.0%
GGCGAAATACATGGGTGAGA+TGG - tig0030658:46426-46445 None:intergenic 50.0%
TGGAGCTCCAGTCATGTTTG+TGG + tig0030658:46613-46632 Msa1444120:CDS 50.0%
GGAGCTCCAGTCATGTTTGT+GGG + tig0030658:46614-46633 Msa1444120:CDS 50.0%
CCAGTCATGTTTGTGGGATG+CGG + tig0030658:46620-46639 Msa1444120:CDS 50.0%
TCTAGAGGAGCGATCTGGTG+CGG + tig0030658:42620-42639 Msa1444120:CDS 55.0%
TGAAGCTGAGGCTCGTTCTG+AGG + tig0030658:42860-42879 Msa1444120:CDS 55.0%
TCGAATCCGGTGGTTGTAGG+TGG + tig0030658:42894-42913 Msa1444120:CDS 55.0%
CGAATCCGGTGGTTGTAGGT+GGG + tig0030658:42895-42914 Msa1444120:CDS 55.0%
CGGTGGTTGTAGGTGGGAAT+AGG + tig0030658:42901-42920 Msa1444120:CDS 55.0%
CAGGTGACATGGAAGGGAGA+TGG + tig0030658:42930-42949 Msa1444120:CDS 55.0%
GGGAAGAAGAATGCCAGTGC+TGG + tig0030658:42960-42979 Msa1444120:CDS 55.0%
!! AAGAATGCCAGTGCTGGTGG+TGG + tig0030658:42966-42985 Msa1444120:CDS 55.0%
CCCAAGACGATACCGTCACA+AGG - tig0030658:44087-44106 None:intergenic 55.0%
CAGGAGCTGTTGAGCAGTTG+CGG + tig0030658:44992-45011 Msa1444120:CDS 55.0%
GACTCATGCACGCAGACTTC+AGG + tig0030658:45014-45033 Msa1444120:CDS 55.0%
GTTGTGCTAGTCGACACAGC+TGG + tig0030658:45205-45224 Msa1444120:CDS 55.0%
ACCCTCCAAGGTTTGCGATG+TGG + tig0030658:45616-45635 Msa1444120:intron 55.0%
CCCACATCGCAAACCTTGGA+GGG - tig0030658:45620-45639 None:intergenic 55.0%
CCCTCCAAGGTTTGCGATGT+GGG + tig0030658:45617-45636 Msa1444120:intron 55.0%
! ACCCTCCAAGGTTTGGGATG+TGG + tig0030658:45654-45673 Msa1444120:intron 55.0%
CCCACATCCCAAACCTTGGA+GGG - tig0030658:45658-45677 None:intergenic 55.0%
! CCCTCCAAGGTTTGGGATGT+GGG + tig0030658:45655-45674 Msa1444120:intron 55.0%
GGGAAGGGGGCGAAATACAT+GGG - tig0030658:46434-46453 None:intergenic 55.0%
AGGGAAGGGGGCGAAATACA+TGG - tig0030658:46435-46454 None:intergenic 55.0%
GGTGGGAGCTGCACTTTCAA+TGG + tig0030658:46580-46599 Msa1444120:intron 55.0%
CCGCATCCCACAAACATGAC+TGG - tig0030658:46623-46642 None:intergenic 55.0%
!! AATGCCAGTGCTGGTGGTGG+TGG + tig0030658:42969-42988 Msa1444120:CDS 60.0%
GGCGGCAATGGAAGATGCAC+TGG + tig0030658:44669-44688 Msa1444120:intron 60.0%
CGACACAGCTGGTCGTATGC+AGG + tig0030658:45216-45235 Msa1444120:CDS 60.0%
GCAACAGACCACCTGAGCCA+AGG + tig0030658:45400-45419 Msa1444120:intron 60.0%
TGAAGGAGCCTTGGCTCAGG+TGG - tig0030658:45411-45430 None:intergenic 60.0%
! CTCTGAAGGAGCCTTGGCTC+AGG - tig0030658:45414-45433 None:intergenic 60.0%
GAGCCAAGGCTCCTTCAGAG+AGG + tig0030658:45414-45433 Msa1444120:intron 60.0%
GCCCACATCGCAAACCTTGG+AGG - tig0030658:45621-45640 None:intergenic 60.0%
CTGGCCCACATCGCAAACCT+TGG - tig0030658:45624-45643 None:intergenic 60.0%
GCCCACATCCCAAACCTTGG+AGG - tig0030658:45659-45678 None:intergenic 60.0%
CTGGCCCACATCCCAAACCT+TGG - tig0030658:45662-45681 None:intergenic 60.0%
!! GCCAGTGCTGGTGGTGGTGG+CGG + tig0030658:42972-42991 Msa1444120:CDS 70.0%
ACCGCCACCACCACCAGCAC+TGG - tig0030658:42976-42995 None:intergenic 70.0%
!! AGTGCTGGTGGTGGTGGCGG+TGG + tig0030658:42975-42994 Msa1444120:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0030658 gene 42340 47053 42340 ID=Msa1444120;Name=Msa1444120
tig0030658 mRNA 42340 47053 42340 ID=Msa1444120-mRNA-1;Parent=Msa1444120;Name=Msa1444120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=136|1|1|1|0.88|0.8|10|347|636
tig0030658 exon 42340 42470 42340 ID=Msa1444120-mRNA-1:exon:14322;Parent=Msa1444120-mRNA-1
tig0030658 exon 42502 43519 42502 ID=Msa1444120-mRNA-1:exon:14323;Parent=Msa1444120-mRNA-1
tig0030658 exon 44264 44348 44264 ID=Msa1444120-mRNA-1:exon:14324;Parent=Msa1444120-mRNA-1
tig0030658 exon 44470 44565 44470 ID=Msa1444120-mRNA-1:exon:14325;Parent=Msa1444120-mRNA-1
tig0030658 exon 44670 44822 44670 ID=Msa1444120-mRNA-1:exon:14326;Parent=Msa1444120-mRNA-1
tig0030658 exon 44928 45035 44928 ID=Msa1444120-mRNA-1:exon:14327;Parent=Msa1444120-mRNA-1
tig0030658 exon 45118 45237 45118 ID=Msa1444120-mRNA-1:exon:14328;Parent=Msa1444120-mRNA-1
tig0030658 exon 45928 46053 45928 ID=Msa1444120-mRNA-1:exon:14329;Parent=Msa1444120-mRNA-1
tig0030658 exon 46157 46240 46157 ID=Msa1444120-mRNA-1:exon:14330;Parent=Msa1444120-mRNA-1
tig0030658 exon 46581 47053 46581 ID=Msa1444120-mRNA-1:exon:14331;Parent=Msa1444120-mRNA-1
tig0030658 five_prime_UTR 42340 42470 42340 ID=Msa1444120-mRNA-1:five_prime_utr;Parent=Msa1444120-mRNA-1
tig0030658 five_prime_UTR 42502 42506 42502 ID=Msa1444120-mRNA-1:five_prime_utr;Parent=Msa1444120-mRNA-1
tig0030658 CDS 42507 43519 42507 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 CDS 44264 44348 44264 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 CDS 44470 44565 44470 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 CDS 44670 44822 44670 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 CDS 44928 45035 44928 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 CDS 45118 45237 45118 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 CDS 45928 46053 45928 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 CDS 46157 46240 46157 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 CDS 46581 46706 46581 ID=Msa1444120-mRNA-1:cds;Parent=Msa1444120-mRNA-1
tig0030658 three_prime_UTR 46707 47053 46707 ID=Msa1444120-mRNA-1:three_prime_utr;Parent=Msa1444120-mRNA-1
Gene Sequence

>Msa1444120

ATGTTAGAGCAGTTACTGATTTTCACAAGAGGAGGATTAATCCTCTGGTCATGCAATGAAATTGGCAACGCTTTGAAAGGATCACCGATCGATACATTGATTCGATCTTGTCTTCTAGAGGAGCGATCTGGTGCGGCATCTTACAATTACGATGCACCTGGAGCTGCTTATTCTCTCAAATGGACTTTTCACAATGATCTAGGTCTTGTTTTCGTTGCTGTTTATCAGAGAATTCTGCATCTGCTCTATGTGGATGATTTGCTTGCTGCTGTTAAGCGTGAATTCTCGCAGGTTTATGATCCCACCAGAACCGTGTATCGAGATTTTGATCAGATTTTTAAGCAGTTGAAGATTGAAGCTGAGGCTCGTTCTGAGGATTTGAAGAAATCGAATCCGGTGGTTGTAGGTGGGAATAGGAAACAGCAGGTGACATGGAAGGGAGATGGATCTGATGGGAAGAAGAATGCCAGTGCTGGTGGTGGTGGCGGTGGTTTGAAGAATGACGGTGATGGGAAAAATGGGAAGAAGAATTCTGATAATGACCGTTCTGTTATTGTGAATAACGGTAACGGTTATAATTTGAGGAGTAACGGTGTTGTTGGTAATGTTAGTGTAAATGGTAAAGAGAATGATAGTGTAAACAATGGAGCTTTTGATGTAAATAGGCTCCAGAAGAAGGTTAGGAATAAAGGCGGGAATGGAAAGAAAACAGACGCTGTTGTAACCAAGGCTGAGCCGAAAAAGGTAGTTAAGAAAAATAGGGTTTGGGATGACAAACCCGTTGAAACTAAGTTAGATTTTACGGATCATGTTGATGTTGATGGGGATGCTGATAAGGATAGGAAGGTTGATTATTTGGCTAAGGAACAAGGTGAGAGTATGATGGATAAAGATGAGATTTTTAGTAGTGACAGTGAGGATGAAGAGGATGATGATGATGAGGATGATGATGCTGGGAAGAAGAGCAAGCCTGATGCTAAAAAGAAGGGTTGGTTTTCATCTATGTTCCAGAGTATTGCTGGGAAGGCCAATTTGGAGAAGTCGGACTTGGAACCAGCTTTGAAAGCTCTGAAGGATAGACTCATGACCAAGAATGTGGCTGAGGAAATAGCTGAGAAGCTATGTGAATCAGTGGCTGCAAGTCTTGAAGGCAAAAAACTGGCTTCATTTACAAGGATATCTTCCACAGTGCAGGCGGCAATGGAAGATGCACTGGTTCGTATTTTAACTCCTAGGCGTTCTATTGACATATTGAGGGATGTTCATGCTGCAAAAGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGAGTTAATGGAGTTGGAAAATCTACTAATCTTGCTAAGGTTGCTTACTGGCTTCAGCAACACAATGTTAATGTCATGATGGCTGCTTGTGATACATTTCGATCAGGAGCTGTTGAGCAGTTGCGGACTCATGCACGCAGACTTCAGATCCCTATATTTGAGAAGGGTTATGAAAAAGATCCTGCTGTTGTGGCAAAAGAAGCAATTCAGGAAGCTTCACGGAATGGTTCGGATGTTGTGCTAGTCGACACAGCTGGTCGTATGCAGGATAATGAACCATTGATGAGAGCACTGTCAAAGCTGATCTACCTTAACAATCCTGACCTGGTCTTATTTGTTGGAGAAGCACTGGTTGGCAATGATGCAGTTGATCAGCTTTCAAAGTTCAACCAGAAACTGGCTGACCTTTCCACATCTCCTACACCCAGATTGATTGATGGGATCTTGCTCACAAAGTTCGACACTATTGATGATAAGGTGGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCAGTCATGTTTGTGGGATGCGGACAGTCCTATACCGACCTCAAGAAACTCAACGTCAAGTCCATTGTGAAGACGCTCCTTAAATGA

Protein sequence

>Msa1444120

MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYSLKWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRDFDQIFKQLKIEAEARSEDLKKSNPVVVGGNRKQQVTWKGDGSDGKKNASAGGGGGGLKNDGDGKNGKKNSDNDRSVIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGNGKKTDAVVTKAEPKKVVKKNRVWDDKPVETKLDFTDHVDVDGDADKDRKVDYLAKEQGESMMDKDEIFSSDSEDEEDDDDEDDDAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK*