Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188780 | XP_003592896.1 | 94.608 | 204 | 10 | 1 | 1 | 204 | 1 | 203 | 1.58e-140 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188780 | sp|Q9SEH3|RAD2C_ARATH | 75.124 | 201 | 48 | 1 | 3 | 203 | 2 | 200 | 3.31e-113 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188780 | Q1SL04 | 94.608 | 204 | 10 | 1 | 1 | 204 | 1 | 203 | 7.55e-141 | 400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030170 | Msa0188780 | 0.820701 | 5.968013e-53 | -8.615850e-47 |
| Msa0032920 | Msa0188780 | -0.812795 | 3.541489e-51 | -8.615850e-47 |
| Msa0032960 | Msa0188780 | -0.818075 | 2.368111e-52 | -8.615850e-47 |
| Msa0125660 | Msa0188780 | 0.832879 | 7.347976e-56 | -8.615850e-47 |
| Msa0188780 | Msa0231200 | 0.807633 | 4.595023e-50 | -8.615850e-47 |
| Msa0188780 | Msa0270120 | 0.851208 | 1.030920e-60 | -8.615850e-47 |
| Msa0188780 | Msa0275080 | 0.822348 | 2.485406e-53 | -8.615850e-47 |
| Msa0188780 | Msa0315980 | 0.821917 | 3.129219e-53 | -8.615850e-47 |
| Msa0188780 | Msa0323270 | 0.808884 | 2.487308e-50 | -8.615850e-47 |
| Msa0188780 | Msa0336010 | 0.810627 | 1.049336e-50 | -8.615850e-47 |
| Msa0188780 | Msa0386850 | 0.800242 | 1.579588e-48 | -8.615850e-47 |
| Msa0188780 | Msa0469030 | 0.802261 | 6.101713e-49 | -8.615850e-47 |
| Msa0188780 | Msa0608320 | 0.804342 | 2.261879e-49 | -8.615850e-47 |
| Msa0188780 | Msa0626450 | 0.808191 | 3.496329e-50 | -8.615850e-47 |
| Msa0188780 | Msa0626490 | 0.810637 | 1.044088e-50 | -8.615850e-47 |
| Msa0188780 | Msa0664600 | 0.803095 | 4.104763e-49 | -8.615850e-47 |
| Msa0188780 | Msa0669520 | 0.815745 | 7.897124e-52 | -8.615850e-47 |
| Msa0188780 | Msa0770720 | 0.809596 | 1.750092e-50 | -8.615850e-47 |
| Msa0188780 | Msa0790490 | 0.803790 | 2.945823e-49 | -8.615850e-47 |
| Msa0188780 | Msa0845440 | 0.805807 | 1.116818e-49 | -8.615850e-47 |
| Msa0188780 | Msa0925440 | 0.800697 | 1.276080e-48 | -8.615850e-47 |
| Msa0188780 | Msa0980140 | 0.807463 | 4.993163e-50 | -8.615850e-47 |
| Msa0188780 | Msa1020670 | 0.846894 | 1.629983e-59 | -8.615850e-47 |
| Msa0188780 | Msa1051830 | 0.816606 | 5.070325e-52 | -8.615850e-47 |
| Msa0188780 | Msa1096970 | 0.819327 | 1.230866e-52 | -8.615850e-47 |
| Msa0188780 | Msa1124110 | 0.809301 | 2.024266e-50 | -8.615850e-47 |
| Msa0188780 | Msa1181860 | 0.802457 | 5.560542e-49 | -8.615850e-47 |
| Msa0188780 | Msa1374120 | 0.803487 | 3.405515e-49 | -8.615850e-47 |
| Msa0188780 | Msa1429930 | 0.989640 | 5.372453e-179 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188780 | MtrunA17_Chr2g0276931 | 94.608 | 204 | 10 | 1 | 1 | 204 | 1 | 203 | 1.45e-144 | 400 |
| Msa0188780 | MtrunA17_Chr4g0055651 | 74.627 | 201 | 49 | 1 | 3 | 203 | 2 | 200 | 1.61e-113 | 322 |
| Msa0188780 | MtrunA17_Chr7g0250531 | 75.124 | 201 | 48 | 1 | 3 | 203 | 2 | 200 | 6.46e-113 | 320 |
| Msa0188780 | MtrunA17_Chr8g0335471 | 73.632 | 201 | 52 | 1 | 3 | 203 | 2 | 201 | 8.68e-110 | 312 |
| Msa0188780 | MtrunA17_Chr4g0030911 | 54.854 | 206 | 85 | 4 | 5 | 204 | 11 | 214 | 2.71e-77 | 231 |
| Msa0188780 | MtrunA17_Chr1g0182321 | 52.074 | 217 | 81 | 3 | 2 | 204 | 8 | 215 | 3.02e-77 | 231 |
| Msa0188780 | MtrunA17_Chr1g0182301 | 51.613 | 217 | 82 | 3 | 2 | 204 | 8 | 215 | 1.31e-76 | 229 |
| Msa0188780 | MtrunA17_Chr1g0212521 | 53.398 | 206 | 89 | 3 | 5 | 204 | 11 | 215 | 1.81e-76 | 228 |
| Msa0188780 | MtrunA17_Chr7g0263071 | 53.589 | 209 | 84 | 4 | 5 | 204 | 11 | 215 | 7.42e-76 | 227 |
| Msa0188780 | MtrunA17_Chr2g0327911 | 46.890 | 209 | 102 | 4 | 2 | 204 | 8 | 213 | 6.04e-64 | 197 |
| Msa0188780 | MtrunA17_Chr3g0112681 | 44.976 | 209 | 107 | 2 | 3 | 203 | 6 | 214 | 3.71e-60 | 187 |
| Msa0188780 | MtrunA17_Chr4g0032201 | 45.192 | 208 | 107 | 2 | 3 | 203 | 6 | 213 | 5.57e-60 | 187 |
| Msa0188780 | MtrunA17_Chr2g0276941 | 45.755 | 212 | 106 | 3 | 1 | 203 | 7 | 218 | 7.09e-60 | 186 |
| Msa0188780 | MtrunA17_Chr3g0123821 | 42.723 | 213 | 111 | 3 | 2 | 203 | 9 | 221 | 1.09e-57 | 181 |
| Msa0188780 | MtrunA17_Chr8g0384311 | 47.549 | 204 | 102 | 5 | 3 | 203 | 7 | 208 | 1.32e-57 | 180 |
| Msa0188780 | MtrunA17_Chr2g0290891 | 49.112 | 169 | 86 | 0 | 6 | 174 | 3 | 171 | 1.80e-57 | 180 |
| Msa0188780 | MtrunA17_Chr7g0234201 | 44.828 | 203 | 105 | 3 | 8 | 203 | 12 | 214 | 2.79e-57 | 180 |
| Msa0188780 | MtrunA17_Chr2g0315551 | 42.857 | 210 | 112 | 1 | 2 | 203 | 6 | 215 | 3.41e-57 | 179 |
| Msa0188780 | MtrunA17_Chr6g0458081 | 49.697 | 165 | 83 | 0 | 6 | 170 | 3 | 167 | 3.89e-57 | 179 |
| Msa0188780 | MtrunA17_Chr8g0381841 | 43.192 | 213 | 110 | 3 | 2 | 203 | 10 | 222 | 5.12e-57 | 179 |
| Msa0188780 | MtrunA17_Chr1g0174281 | 42.791 | 215 | 110 | 2 | 3 | 204 | 9 | 223 | 3.57e-55 | 175 |
| Msa0188780 | MtrunA17_Chr1g0189361 | 51.205 | 166 | 81 | 0 | 7 | 172 | 12 | 177 | 4.58e-55 | 174 |
| Msa0188780 | MtrunA17_Chr2g0325091 | 45.192 | 208 | 107 | 3 | 3 | 203 | 5 | 212 | 5.39e-55 | 174 |
| Msa0188780 | MtrunA17_Chr1g0159481 | 54.762 | 168 | 73 | 3 | 5 | 170 | 13 | 179 | 6.14e-55 | 174 |
| Msa0188780 | MtrunA17_Chr7g0231131 | 43.878 | 196 | 108 | 1 | 3 | 196 | 9 | 204 | 1.44e-54 | 173 |
| Msa0188780 | MtrunA17_Chr2g0283131 | 42.857 | 210 | 112 | 2 | 2 | 203 | 6 | 215 | 3.48e-54 | 172 |
| Msa0188780 | MtrunA17_Chr4g0040781 | 49.112 | 169 | 86 | 0 | 2 | 170 | 6 | 174 | 1.19e-53 | 171 |
| Msa0188780 | MtrunA17_Chr6g0482721 | 48.810 | 168 | 86 | 0 | 3 | 170 | 6 | 173 | 1.20e-53 | 171 |
| Msa0188780 | MtrunA17_Chr4g0046261 | 48.521 | 169 | 87 | 0 | 2 | 170 | 6 | 174 | 1.83e-53 | 170 |
| Msa0188780 | MtrunA17_Chr2g0319951 | 47.929 | 169 | 88 | 0 | 2 | 170 | 6 | 174 | 4.00e-53 | 169 |
| Msa0188780 | MtrunA17_Chr8g0346421 | 45.989 | 187 | 94 | 1 | 7 | 193 | 24 | 203 | 5.44e-53 | 169 |
| Msa0188780 | MtrunA17_Chr8g0349711 | 48.466 | 163 | 84 | 0 | 8 | 170 | 5 | 167 | 1.69e-52 | 167 |
| Msa0188780 | MtrunA17_Chr8g0392931 | 50.595 | 168 | 83 | 0 | 3 | 170 | 8 | 175 | 5.73e-52 | 166 |
| Msa0188780 | MtrunA17_Chr7g0214241 | 47.904 | 167 | 87 | 0 | 8 | 174 | 14 | 180 | 1.23e-51 | 166 |
| Msa0188780 | MtrunA17_Chr7g0265001 | 44.776 | 201 | 108 | 3 | 6 | 203 | 13 | 213 | 2.06e-51 | 165 |
| Msa0188780 | MtrunA17_Chr7g0275991 | 43.158 | 190 | 108 | 0 | 7 | 196 | 18 | 207 | 2.46e-51 | 165 |
| Msa0188780 | MtrunA17_Chr1g0180291 | 45.274 | 201 | 106 | 4 | 6 | 203 | 11 | 210 | 1.83e-50 | 162 |
| Msa0188780 | MtrunA17_Chr8g0349681 | 47.929 | 169 | 88 | 0 | 6 | 174 | 381 | 549 | 7.76e-50 | 170 |
| Msa0188780 | MtrunA17_Chr8g0349681 | 44.643 | 168 | 93 | 0 | 3 | 170 | 169 | 336 | 7.88e-46 | 159 |
| Msa0188780 | MtrunA17_Chr8g0349681 | 45.625 | 160 | 87 | 0 | 8 | 167 | 12 | 171 | 3.77e-44 | 154 |
| Msa0188780 | MtrunA17_Chr3g0130271 | 44.828 | 203 | 106 | 6 | 5 | 203 | 8 | 208 | 1.62e-49 | 160 |
| Msa0188780 | MtrunA17_Chr8g0351861 | 39.906 | 213 | 112 | 1 | 7 | 203 | 14 | 226 | 3.50e-48 | 157 |
| Msa0188780 | MtrunA17_Chr1g0197331 | 43.689 | 206 | 112 | 4 | 1 | 203 | 7 | 211 | 3.11e-47 | 154 |
| Msa0188780 | MtrunA17_Chr4g0055081 | 42.690 | 171 | 97 | 1 | 10 | 180 | 10 | 179 | 4.11e-44 | 146 |
| Msa0188780 | MtrunA17_Chr5g0400131 | 43.478 | 161 | 91 | 0 | 10 | 170 | 10 | 170 | 4.18e-44 | 146 |
| Msa0188780 | MtrunA17_Chr8g0382221 | 42.857 | 161 | 92 | 0 | 10 | 170 | 10 | 170 | 1.67e-43 | 144 |
| Msa0188780 | MtrunA17_Chr3g0123971 | 42.857 | 161 | 92 | 0 | 10 | 170 | 10 | 170 | 1.68e-42 | 142 |
| Msa0188780 | MtrunA17_Chr5g0433561 | 36.559 | 186 | 108 | 1 | 11 | 186 | 12 | 197 | 2.24e-40 | 136 |
| Msa0188780 | MtrunA17_Chr4g0034871 | 41.071 | 168 | 92 | 3 | 9 | 169 | 8 | 175 | 4.56e-40 | 135 |
| Msa0188780 | MtrunA17_Chr3g0109721 | 38.596 | 171 | 105 | 0 | 11 | 181 | 12 | 182 | 5.56e-40 | 135 |
| Msa0188780 | MtrunA17_Chr8g0390561 | 35.294 | 204 | 126 | 2 | 1 | 204 | 1 | 198 | 1.38e-39 | 134 |
| Msa0188780 | MtrunA17_Chr1g0199331 | 38.509 | 161 | 98 | 1 | 11 | 170 | 33 | 193 | 5.34e-38 | 130 |
| Msa0188780 | MtrunA17_Chr2g0331691 | 38.043 | 184 | 104 | 4 | 2 | 178 | 3 | 183 | 5.93e-37 | 127 |
| Msa0188780 | MtrunA17_Chr4g0004661 | 39.548 | 177 | 97 | 4 | 9 | 178 | 64 | 237 | 1.88e-36 | 128 |
| Msa0188780 | MtrunA17_Chr6g0466301 | 36.364 | 198 | 105 | 5 | 9 | 198 | 8 | 192 | 1.01e-35 | 124 |
| Msa0188780 | MtrunA17_Chr6g0465491 | 36.364 | 198 | 105 | 5 | 9 | 198 | 8 | 192 | 1.01e-35 | 124 |
| Msa0188780 | MtrunA17_Chr1g0201121 | 36.747 | 166 | 98 | 3 | 9 | 167 | 8 | 173 | 4.70e-34 | 120 |
| Msa0188780 | MtrunA17_Chr8g0383261 | 36.747 | 166 | 98 | 3 | 9 | 167 | 12 | 177 | 2.58e-31 | 113 |
| Msa0188780 | MtrunA17_Chr6g0465471 | 36.913 | 149 | 87 | 4 | 26 | 167 | 7 | 155 | 2.08e-24 | 95.5 |
| Msa0188780 | MtrunA17_Chr6g0466161 | 36.913 | 149 | 87 | 4 | 26 | 167 | 7 | 155 | 2.34e-24 | 95.5 |
| Msa0188780 | MtrunA17_Chr8g0371501 | 31.609 | 174 | 91 | 6 | 9 | 163 | 6 | 170 | 5.20e-21 | 86.3 |
| Msa0188780 | MtrunA17_Chr4g0037021 | 30.286 | 175 | 105 | 7 | 1 | 163 | 1 | 170 | 3.28e-20 | 84.3 |
| Msa0188780 | MtrunA17_Chr3g0138111 | 29.891 | 184 | 122 | 5 | 10 | 191 | 14 | 192 | 5.96e-20 | 84.0 |
| Msa0188780 | MtrunA17_Chr3g0138121 | 29.891 | 184 | 122 | 5 | 10 | 191 | 14 | 192 | 6.35e-20 | 84.0 |
| Msa0188780 | MtrunA17_Chr3g0138101 | 29.891 | 184 | 122 | 5 | 10 | 191 | 14 | 192 | 6.69e-20 | 84.0 |
| Msa0188780 | MtrunA17_Chr2g0325101 | 31.138 | 167 | 101 | 6 | 9 | 163 | 6 | 170 | 7.53e-20 | 83.2 |
| Msa0188780 | MtrunA17_Chr6g0486041 | 30.114 | 176 | 95 | 5 | 9 | 165 | 6 | 172 | 7.56e-20 | 83.6 |
| Msa0188780 | MtrunA17_Chr4g0046211 | 32.353 | 136 | 82 | 4 | 9 | 143 | 6 | 132 | 1.06e-19 | 81.6 |
| Msa0188780 | MtrunA17_Chr5g0405791 | 30.539 | 167 | 102 | 5 | 9 | 163 | 6 | 170 | 1.11e-19 | 82.8 |
| Msa0188780 | MtrunA17_Chr3g0117931 | 30.539 | 167 | 102 | 5 | 9 | 163 | 8 | 172 | 2.43e-19 | 82.0 |
| Msa0188780 | MtrunA17_Chr6g0466431 | 35.354 | 99 | 55 | 1 | 9 | 107 | 8 | 97 | 4.78e-18 | 75.9 |
| Msa0188780 | MtrunA17_Chr6g0465611 | 35.354 | 99 | 55 | 1 | 9 | 107 | 8 | 97 | 4.78e-18 | 75.9 |
| Msa0188780 | MtrunA17_Chr1g0178291 | 33.526 | 173 | 105 | 4 | 6 | 178 | 428 | 590 | 2.32e-17 | 79.7 |
| Msa0188780 | MtrunA17_Chr5g0434561 | 30.769 | 156 | 98 | 5 | 10 | 160 | 20 | 170 | 2.60e-13 | 65.5 |
| Msa0188780 | MtrunA17_Chr2g0331841 | 34.146 | 82 | 53 | 1 | 78 | 159 | 2 | 82 | 4.34e-12 | 60.1 |
| Msa0188780 | MtrunA17_Chr5g0443631 | 23.977 | 171 | 118 | 3 | 10 | 172 | 105 | 271 | 1.16e-11 | 62.4 |
| Msa0188780 | MtrunA17_Chr5g0401071 | 28.402 | 169 | 111 | 5 | 10 | 173 | 20 | 183 | 1.26e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188780 | AT4G17530.1 | 75.124 | 201 | 48 | 1 | 3 | 203 | 2 | 200 | 3.37e-114 | 324 |
| Msa0188780 | AT3G11730.1 | 75.862 | 203 | 48 | 1 | 3 | 204 | 2 | 204 | 4.41e-114 | 324 |
| Msa0188780 | AT5G47200.1 | 74.627 | 201 | 49 | 1 | 3 | 203 | 2 | 200 | 3.01e-112 | 319 |
| Msa0188780 | AT1G02130.1 | 73.134 | 201 | 53 | 1 | 3 | 203 | 2 | 201 | 1.37e-110 | 315 |
| Msa0188780 | AT5G59840.1 | 53.398 | 206 | 89 | 3 | 5 | 204 | 11 | 215 | 3.47e-76 | 228 |
| Msa0188780 | AT3G46060.2 | 53.398 | 206 | 89 | 3 | 5 | 204 | 11 | 215 | 3.75e-76 | 228 |
| Msa0188780 | AT3G46060.3 | 53.398 | 206 | 89 | 3 | 5 | 204 | 11 | 215 | 3.75e-76 | 228 |
| Msa0188780 | AT3G46060.1 | 53.398 | 206 | 89 | 3 | 5 | 204 | 11 | 215 | 3.75e-76 | 228 |
| Msa0188780 | AT3G53610.2 | 52.404 | 208 | 88 | 4 | 5 | 204 | 11 | 215 | 5.56e-75 | 225 |
| Msa0188780 | AT3G53610.3 | 52.404 | 208 | 88 | 4 | 5 | 204 | 11 | 215 | 5.56e-75 | 225 |
| Msa0188780 | AT3G53610.1 | 52.404 | 208 | 88 | 4 | 5 | 204 | 11 | 215 | 5.56e-75 | 225 |
| Msa0188780 | AT3G09900.1 | 56.701 | 194 | 80 | 2 | 2 | 194 | 8 | 198 | 1.16e-72 | 219 |
| Msa0188780 | AT5G03520.1 | 52.632 | 209 | 89 | 3 | 2 | 203 | 8 | 213 | 1.98e-72 | 219 |
| Msa0188780 | AT1G09630.1 | 46.392 | 194 | 104 | 0 | 3 | 196 | 6 | 199 | 4.35e-60 | 187 |
| Msa0188780 | AT4G35860.1 | 43.721 | 215 | 99 | 2 | 6 | 204 | 3 | 211 | 6.36e-60 | 187 |
| Msa0188780 | AT1G06400.1 | 44.498 | 209 | 109 | 2 | 2 | 203 | 6 | 214 | 7.75e-60 | 187 |
| Msa0188780 | AT3G07410.1 | 51.190 | 168 | 82 | 0 | 7 | 174 | 10 | 177 | 7.45e-59 | 184 |
| Msa0188780 | AT4G17170.1 | 44.762 | 210 | 104 | 3 | 6 | 204 | 3 | 211 | 1.96e-58 | 183 |
| Msa0188780 | AT1G07410.1 | 43.478 | 207 | 111 | 2 | 3 | 203 | 6 | 212 | 3.67e-58 | 182 |
| Msa0188780 | AT3G46830.1 | 45.729 | 199 | 108 | 0 | 3 | 201 | 6 | 204 | 8.11e-57 | 179 |
| Msa0188780 | AT3G46830.2 | 45.729 | 199 | 108 | 0 | 3 | 201 | 6 | 204 | 8.11e-57 | 179 |
| Msa0188780 | AT5G47960.1 | 43.981 | 216 | 104 | 3 | 3 | 204 | 9 | 221 | 1.01e-56 | 179 |
| Msa0188780 | AT4G17160.1 | 43.128 | 211 | 100 | 3 | 6 | 204 | 3 | 205 | 3.17e-56 | 177 |
| Msa0188780 | AT5G59150.1 | 46.154 | 195 | 105 | 0 | 5 | 199 | 8 | 202 | 3.49e-56 | 177 |
| Msa0188780 | AT4G18800.1 | 44.231 | 208 | 109 | 2 | 2 | 203 | 6 | 212 | 5.54e-56 | 177 |
| Msa0188780 | AT4G39990.1 | 43.689 | 206 | 107 | 2 | 7 | 203 | 15 | 220 | 8.73e-56 | 177 |
| Msa0188780 | AT2G43130.1 | 42.157 | 204 | 110 | 2 | 7 | 203 | 10 | 212 | 1.41e-55 | 176 |
| Msa0188780 | AT4G18430.1 | 48.066 | 181 | 94 | 0 | 2 | 182 | 6 | 186 | 1.46e-55 | 176 |
| Msa0188780 | AT5G45750.1 | 46.154 | 195 | 104 | 1 | 2 | 196 | 6 | 199 | 1.57e-55 | 176 |
| Msa0188780 | AT3G12160.1 | 42.925 | 212 | 111 | 2 | 3 | 204 | 9 | 220 | 1.67e-55 | 176 |
| Msa0188780 | AT5G65270.1 | 42.105 | 209 | 109 | 2 | 7 | 203 | 15 | 223 | 3.34e-55 | 175 |
| Msa0188780 | AT1G05810.1 | 48.214 | 168 | 87 | 0 | 7 | 174 | 10 | 177 | 3.97e-55 | 175 |
| Msa0188780 | AT5G60860.1 | 50.296 | 169 | 84 | 0 | 2 | 170 | 6 | 174 | 5.34e-55 | 174 |
| Msa0188780 | AT1G16920.1 | 49.701 | 167 | 84 | 0 | 4 | 170 | 8 | 174 | 9.43e-55 | 174 |
| Msa0188780 | AT1G05810.2 | 48.214 | 168 | 87 | 0 | 7 | 174 | 56 | 223 | 1.25e-54 | 175 |
| Msa0188780 | AT2G31680.1 | 50.318 | 157 | 78 | 0 | 7 | 163 | 10 | 166 | 4.78e-54 | 172 |
| Msa0188780 | AT1G73640.1 | 47.368 | 190 | 99 | 1 | 5 | 193 | 9 | 198 | 5.41e-54 | 172 |
| Msa0188780 | AT5G47520.1 | 50.602 | 166 | 82 | 0 | 7 | 172 | 12 | 177 | 7.50e-54 | 172 |
| Msa0188780 | AT3G15060.1 | 48.521 | 169 | 87 | 0 | 2 | 170 | 6 | 174 | 3.43e-53 | 170 |
| Msa0188780 | AT5G03520.2 | 49.701 | 167 | 74 | 3 | 44 | 203 | 40 | 203 | 5.57e-53 | 169 |
| Msa0188780 | AT1G28550.1 | 41.038 | 212 | 114 | 3 | 2 | 203 | 6 | 216 | 6.79e-53 | 169 |
| Msa0188780 | AT1G18200.1 | 50.000 | 168 | 84 | 0 | 3 | 170 | 7 | 174 | 6.87e-53 | 169 |
| Msa0188780 | AT1G43890.3 | 52.976 | 168 | 76 | 3 | 5 | 170 | 9 | 175 | 2.86e-52 | 167 |
| Msa0188780 | AT1G43890.1 | 52.976 | 168 | 76 | 3 | 5 | 170 | 9 | 175 | 2.86e-52 | 167 |
| Msa0188780 | AT1G43890.2 | 52.976 | 168 | 76 | 3 | 5 | 170 | 9 | 175 | 2.86e-52 | 167 |
| Msa0188780 | AT2G33870.1 | 46.524 | 187 | 93 | 2 | 2 | 181 | 6 | 192 | 2.94e-52 | 167 |
| Msa0188780 | AT5G03530.2 | 52.695 | 167 | 76 | 3 | 6 | 170 | 10 | 175 | 3.25e-50 | 162 |
| Msa0188780 | AT5G03530.1 | 52.695 | 167 | 76 | 3 | 6 | 170 | 10 | 175 | 3.25e-50 | 162 |
| Msa0188780 | AT1G01200.1 | 43.455 | 191 | 107 | 1 | 7 | 196 | 26 | 216 | 3.07e-48 | 158 |
| Msa0188780 | AT2G44610.1 | 43.103 | 174 | 96 | 1 | 10 | 183 | 10 | 180 | 8.27e-45 | 148 |
| Msa0188780 | AT4G39890.1 | 42.593 | 162 | 92 | 1 | 10 | 170 | 10 | 171 | 4.54e-42 | 141 |
| Msa0188780 | AT3G09910.5 | 48.538 | 171 | 85 | 3 | 6 | 174 | 10 | 179 | 7.72e-42 | 140 |
| Msa0188780 | AT3G09910.4 | 48.538 | 171 | 85 | 3 | 6 | 174 | 10 | 179 | 7.72e-42 | 140 |
| Msa0188780 | AT3G09910.3 | 44.500 | 200 | 103 | 4 | 6 | 203 | 10 | 203 | 1.30e-41 | 140 |
| Msa0188780 | AT3G09910.1 | 44.500 | 200 | 103 | 4 | 6 | 203 | 10 | 203 | 1.30e-41 | 140 |
| Msa0188780 | AT3G09910.2 | 44.500 | 200 | 103 | 4 | 6 | 203 | 10 | 203 | 1.30e-41 | 140 |
| Msa0188780 | AT5G10260.1 | 42.236 | 161 | 93 | 0 | 10 | 170 | 10 | 170 | 2.70e-41 | 139 |
| Msa0188780 | AT2G22290.1 | 40.994 | 161 | 95 | 0 | 10 | 170 | 10 | 170 | 8.86e-41 | 138 |
| Msa0188780 | AT4G19640.1 | 39.766 | 171 | 103 | 0 | 11 | 181 | 12 | 182 | 5.55e-40 | 135 |
| Msa0188780 | AT4G35860.2 | 40.000 | 170 | 80 | 2 | 51 | 204 | 2 | 165 | 2.17e-39 | 133 |
| Msa0188780 | AT5G45130.1 | 38.596 | 171 | 105 | 0 | 11 | 181 | 12 | 182 | 4.52e-39 | 133 |
| Msa0188780 | AT3G54840.1 | 41.558 | 154 | 89 | 1 | 11 | 163 | 35 | 188 | 7.69e-39 | 132 |
| Msa0188780 | AT3G54840.2 | 41.558 | 154 | 89 | 1 | 11 | 163 | 35 | 188 | 1.21e-38 | 132 |
| Msa0188780 | AT5G59150.2 | 50.000 | 120 | 60 | 0 | 51 | 170 | 3 | 122 | 1.52e-38 | 130 |
| Msa0188780 | AT3G54840.3 | 41.176 | 153 | 89 | 1 | 12 | 163 | 2 | 154 | 2.21e-38 | 130 |
| Msa0188780 | AT3G18820.1 | 40.476 | 168 | 93 | 3 | 9 | 169 | 8 | 175 | 1.50e-37 | 129 |
| Msa0188780 | AT5G45130.2 | 37.870 | 169 | 105 | 0 | 13 | 181 | 22 | 190 | 2.99e-37 | 129 |
| Msa0188780 | AT5G64990.1 | 34.328 | 201 | 120 | 3 | 10 | 202 | 8 | 204 | 4.47e-36 | 125 |
| Msa0188780 | AT1G52280.1 | 38.983 | 177 | 98 | 4 | 9 | 178 | 8 | 181 | 4.57e-36 | 125 |
| Msa0188780 | AT3G16100.1 | 38.983 | 177 | 98 | 4 | 9 | 178 | 8 | 181 | 5.67e-36 | 125 |
| Msa0188780 | AT4G09720.1 | 40.719 | 167 | 90 | 3 | 9 | 167 | 8 | 173 | 7.10e-36 | 125 |
| Msa0188780 | AT1G49300.2 | 39.394 | 165 | 93 | 3 | 9 | 166 | 8 | 172 | 6.74e-35 | 122 |
| Msa0188780 | AT1G49300.1 | 39.394 | 165 | 93 | 3 | 9 | 166 | 8 | 172 | 6.74e-35 | 122 |
| Msa0188780 | AT2G21880.1 | 36.747 | 166 | 98 | 3 | 9 | 167 | 9 | 174 | 2.15e-34 | 121 |
| Msa0188780 | AT4G09720.4 | 38.372 | 172 | 92 | 3 | 9 | 167 | 8 | 178 | 1.23e-33 | 119 |
| Msa0188780 | AT1G22740.1 | 34.946 | 186 | 109 | 4 | 9 | 182 | 8 | 193 | 2.31e-33 | 119 |
| Msa0188780 | AT5G64990.2 | 33.173 | 208 | 120 | 4 | 10 | 202 | 8 | 211 | 2.44e-33 | 119 |
| Msa0188780 | AT4G09720.3 | 37.079 | 178 | 92 | 3 | 9 | 167 | 8 | 184 | 1.03e-32 | 117 |
| Msa0188780 | AT5G39620.1 | 38.323 | 167 | 92 | 3 | 10 | 167 | 6 | 170 | 7.45e-32 | 115 |
| Msa0188780 | AT4G19640.3 | 41.985 | 131 | 76 | 0 | 11 | 141 | 12 | 142 | 1.75e-31 | 113 |
| Msa0188780 | AT4G19640.2 | 44.828 | 116 | 64 | 0 | 11 | 126 | 12 | 127 | 7.07e-31 | 110 |
| Msa0188780 | AT4G09720.6 | 42.754 | 138 | 70 | 3 | 38 | 167 | 3 | 139 | 5.86e-29 | 106 |
| Msa0188780 | AT4G09720.5 | 42.754 | 138 | 70 | 3 | 38 | 167 | 3 | 139 | 5.86e-29 | 106 |
| Msa0188780 | AT4G09720.2 | 42.754 | 138 | 70 | 3 | 38 | 167 | 3 | 139 | 5.86e-29 | 106 |
| Msa0188780 | AT2G21880.4 | 36.879 | 141 | 82 | 3 | 34 | 167 | 9 | 149 | 4.79e-27 | 102 |
| Msa0188780 | AT2G21880.3 | 36.879 | 141 | 82 | 3 | 34 | 167 | 9 | 149 | 4.79e-27 | 102 |
| Msa0188780 | AT2G21880.2 | 31.928 | 166 | 98 | 4 | 9 | 167 | 9 | 166 | 1.36e-24 | 96.3 |
| Msa0188780 | AT2G44690.1 | 32.335 | 167 | 99 | 5 | 9 | 163 | 18 | 182 | 2.52e-22 | 90.5 |
| Msa0188780 | AT5G55080.1 | 30.864 | 162 | 107 | 4 | 10 | 170 | 14 | 171 | 1.31e-21 | 89.0 |
| Msa0188780 | AT4G35020.1 | 31.034 | 174 | 92 | 6 | 9 | 163 | 6 | 170 | 7.82e-21 | 86.3 |
| Msa0188780 | AT4G35020.2 | 31.034 | 174 | 92 | 6 | 9 | 163 | 6 | 170 | 7.82e-21 | 86.3 |
| Msa0188780 | AT4G35020.3 | 31.034 | 174 | 92 | 6 | 9 | 163 | 6 | 170 | 7.82e-21 | 86.3 |
| Msa0188780 | AT3G48040.1 | 31.138 | 167 | 101 | 5 | 9 | 163 | 8 | 172 | 8.78e-21 | 86.3 |
| Msa0188780 | AT3G51300.1 | 31.515 | 165 | 99 | 5 | 11 | 163 | 8 | 170 | 8.87e-21 | 85.9 |
| Msa0188780 | AT1G75840.1 | 30.539 | 167 | 102 | 5 | 9 | 163 | 6 | 170 | 1.72e-20 | 85.1 |
| Msa0188780 | AT5G45970.1 | 31.138 | 167 | 101 | 6 | 9 | 163 | 6 | 170 | 1.72e-20 | 85.5 |
| Msa0188780 | AT4G35950.1 | 31.609 | 174 | 91 | 6 | 9 | 163 | 6 | 170 | 2.62e-20 | 84.7 |
| Msa0188780 | AT2G17800.2 | 31.138 | 167 | 101 | 5 | 9 | 163 | 6 | 170 | 2.94e-20 | 84.7 |
| Msa0188780 | AT2G17800.1 | 31.138 | 167 | 101 | 5 | 9 | 163 | 6 | 170 | 2.94e-20 | 84.7 |
| Msa0188780 | AT4G28950.1 | 29.940 | 167 | 105 | 5 | 9 | 165 | 6 | 170 | 3.94e-20 | 84.7 |
| Msa0188780 | AT1G20090.1 | 30.460 | 174 | 93 | 6 | 9 | 163 | 5 | 169 | 4.25e-20 | 84.3 |
| Msa0188780 | AT5G20010.1 | 28.502 | 207 | 126 | 7 | 10 | 199 | 14 | 215 | 6.27e-20 | 84.3 |
| Msa0188780 | AT5G55190.1 | 29.891 | 184 | 122 | 5 | 10 | 191 | 14 | 192 | 9.53e-20 | 84.0 |
| Msa0188780 | AT5G62880.2 | 34.959 | 123 | 77 | 3 | 9 | 130 | 8 | 128 | 1.89e-19 | 82.4 |
| Msa0188780 | AT3G48040.2 | 34.146 | 123 | 78 | 3 | 9 | 130 | 8 | 128 | 1.90e-19 | 82.0 |
| Msa0188780 | AT5G62880.1 | 34.959 | 123 | 77 | 3 | 9 | 130 | 8 | 128 | 2.98e-19 | 82.4 |
| Msa0188780 | AT5G20020.1 | 31.288 | 163 | 105 | 5 | 10 | 170 | 14 | 171 | 3.62e-19 | 82.4 |
| Msa0188780 | AT5G46025.1 | 39.450 | 109 | 64 | 2 | 71 | 178 | 6 | 113 | 5.56e-19 | 79.0 |
| Msa0188780 | AT4G35020.4 | 32.812 | 128 | 78 | 4 | 11 | 132 | 8 | 133 | 3.60e-17 | 75.1 |
| Msa0188780 | AT4G35020.5 | 32.812 | 128 | 78 | 4 | 11 | 132 | 8 | 133 | 3.60e-17 | 75.1 |
| Msa0188780 | AT5G67560.1 | 30.189 | 159 | 101 | 5 | 10 | 163 | 20 | 173 | 5.58e-13 | 65.1 |
| Msa0188780 | AT3G49870.2 | 28.994 | 169 | 110 | 5 | 10 | 173 | 1 | 164 | 8.05e-13 | 64.3 |
| Msa0188780 | AT5G37680.1 | 30.769 | 156 | 98 | 5 | 10 | 160 | 20 | 170 | 1.46e-12 | 63.9 |
| Msa0188780 | AT3G49870.1 | 28.994 | 169 | 110 | 5 | 10 | 173 | 20 | 183 | 2.16e-12 | 63.5 |
| Msa0188780 | AT3G51290.2 | 30.496 | 141 | 84 | 5 | 35 | 163 | 633 | 771 | 1.69e-11 | 63.2 |
Find 56 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTAAACTTCTGATTAT+TGG | 0.148817 | 2_1:-3976304 | Msa0188780:CDS |
| GTAATTAATAGATGGTATTT+TGG | 0.225282 | 2_1:+3975242 | None:intergenic |
| CGGCGGGTTGAGTGGAGAAT+TGG | 0.325827 | 2_1:-3976485 | Msa0188780:five_prime_UTR |
| TCTGTCTCCAAGCTTCTTGT+TGG | 0.372249 | 2_1:-3975714 | Msa0188780:CDS |
| CGAGCAGGCTTTCTTAACTA+TGG | 0.379697 | 2_1:-3975577 | Msa0188780:CDS |
| CTTAGTACCAGTTGTTGGTT+GGG | 0.381427 | 2_1:+3975435 | None:intergenic |
| CTGTCTCCAAGCTTCTTGTT+GGG | 0.389925 | 2_1:-3975713 | Msa0188780:CDS |
| GAAAGCCTGCTCGACATTGA+TGG | 0.390374 | 2_1:+3975587 | None:intergenic |
| CCGTGTTGTTATAACATAGA+TGG | 0.412701 | 2_1:-3975276 | Msa0188780:three_prime_UTR |
| ATCAGAACTGTTGAACTTGA+AGG | 0.417340 | 2_1:-3976004 | Msa0188780:CDS |
| GCTGACTTAGTACCAGTTGT+TGG | 0.422921 | 2_1:+3975430 | None:intergenic |
| ACTTAGTACCAGTTGTTGGT+TGG | 0.438762 | 2_1:+3975434 | None:intergenic |
| TCAGCCTTGTAATTAATAGA+TGG | 0.449919 | 2_1:+3975234 | None:intergenic |
| CAATAATCAGAAGTTTAAAC+AGG | 0.456211 | 2_1:+3976305 | None:intergenic |
| AATATGTAAACAGAATATTA+TGG | 0.457274 | 2_1:+3975142 | None:intergenic |
| GGCGGGTTGAGTGGAGAATT+GGG | 0.459236 | 2_1:-3976484 | Msa0188780:five_prime_UTR |
| ATTATTGGAGATTCCTCTGT+TGG | 0.459509 | 2_1:-3976289 | Msa0188780:CDS |
| CAGTTGGTGTTCTGTGGGAT+TGG | 0.460139 | 2_1:+3975379 | None:intergenic |
| GAGTTACTTGTTCTTAATCT+CGG | 0.464801 | 2_1:+3975551 | None:intergenic |
| TTTATTCCCAACAAGAAGCT+TGG | 0.465262 | 2_1:+3975707 | None:intergenic |
| TTTGTTTAGTGGGATACTGC+TGG | 0.467245 | 2_1:-3975876 | Msa0188780:intron |
| GAACACCAACTGTTGTGGTT+AGG | 0.480585 | 2_1:-3975368 | Msa0188780:exon |
| TAGCACTTGTCTCAAGGAAA+GGG | 0.481996 | 2_1:+3975616 | None:intergenic |
| AGCAGAATCTGTTCAGATCA+AGG | 0.484521 | 2_1:-3975407 | Msa0188780:CDS |
| ATGGGAACCCAACCAACAAC+TGG | 0.487422 | 2_1:-3975442 | Msa0188780:CDS |
| CGCAAAAGCCTTGGCAGTGT+GGG | 0.491480 | 2_1:+3975653 | None:intergenic |
| GGGTTTGAACAAGCTTGTTG+TGG | 0.493364 | 2_1:+3975673 | None:intergenic |
| AGCATCATTTATTAGTTACA+AGG | 0.505939 | 2_1:-3975171 | Msa0188780:three_prime_UTR |
| CCACAACAGTTGGTGTTCTG+TGG | 0.508955 | 2_1:+3975373 | None:intergenic |
| GGTTTGAACAAGCTTGTTGT+GGG | 0.511858 | 2_1:+3975674 | None:intergenic |
| TGAATTGAATTGAAGACGAA+AGG | 0.514755 | 2_1:-3976443 | Msa0188780:five_prime_UTR |
| TTAGTGGGATACTGCTGGAC+AGG | 0.521218 | 2_1:-3975871 | Msa0188780:intron |
| TTAGCACTTGTCTCAAGGAA+AGG | 0.522871 | 2_1:+3975615 | None:intergenic |
| ATTACTAGCAGTTACTATAG+AGG | 0.524007 | 2_1:-3975834 | Msa0188780:CDS |
| AGAAAGAGTTGAGAAAGAGA+TGG | 0.533717 | 2_1:+3975329 | None:intergenic |
| AGACTCCATCAATGTCGAGC+AGG | 0.537523 | 2_1:-3975592 | Msa0188780:CDS |
| GCAGAATCTGTTCAGATCAA+GGG | 0.538023 | 2_1:-3975406 | Msa0188780:CDS |
| AAGGTGATCCGCAAAAGCCT+TGG | 0.553691 | 2_1:+3975644 | None:intergenic |
| CACAACAGTTGGTGTTCTGT+GGG | 0.556435 | 2_1:+3975374 | None:intergenic |
| GTATTAAGCGGCGGGTTGAG+TGG | 0.557549 | 2_1:-3976493 | Msa0188780:five_prime_UTR |
| AGAACTGACAATCTGCAGCT+TGG | 0.559063 | 2_1:+3975973 | None:intergenic |
| AATACCATCTATTAATTACA+AGG | 0.562313 | 2_1:-3975238 | Msa0188780:three_prime_UTR |
| TGTTCAAACCCACACTGCCA+AGG | 0.568100 | 2_1:-3975661 | Msa0188780:CDS |
| AGTCTTTAGCACTTGTCTCA+AGG | 0.571585 | 2_1:+3975610 | None:intergenic |
| GACACCTACATTAGTACCAT+CGG | 0.591697 | 2_1:-3976126 | Msa0188780:CDS |
| CCACAGAACACCAACTGTTG+TGG | 0.596694 | 2_1:-3975373 | Msa0188780:CDS |
| CCGCAAAAGCCTTGGCAGTG+TGG | 0.598076 | 2_1:+3975652 | None:intergenic |
| TCTCAAGGAAAGGGATAGCA+AGG | 0.608190 | 2_1:+3975625 | None:intergenic |
| TAAGCACAAACAACAACTGA+AGG | 0.608885 | 2_1:-3975116 | Msa0188780:three_prime_UTR |
| AACGCCGATGGTACTAATGT+AGG | 0.610763 | 2_1:+3976122 | None:intergenic |
| CAGAATCTGTTCAGATCAAG+GGG | 0.610829 | 2_1:-3975405 | Msa0188780:CDS |
| TTGAACCTAACCACAACAGT+TGG | 0.624666 | 2_1:+3975363 | None:intergenic |
| GTTTCAACAATGTTAAACAG+TGG | 0.630726 | 2_1:-3975767 | Msa0188780:CDS |
| CCATCTATGTTATAACAACA+CGG | 0.642095 | 2_1:+3975276 | None:intergenic |
| AATTACGAAATCAACGCCGA+TGG | 0.659249 | 2_1:+3976110 | None:intergenic |
| AGTTACTATAGAGGAGCACA+TGG | 0.682181 | 2_1:-3975825 | Msa0188780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGTAAACAGAATATTA+TGG | + | chr2_1:3976612-3976631 | None:intergenic | 15.0% |
| !! | AATATGTAAACAGAATATTA+TGG | + | chr2_1:3976612-3976631 | None:intergenic | 15.0% |
| !! | AAGAAAAAGAAAGAAGAAAA+GGG | + | chr2_1:3975584-3975603 | None:intergenic | 20.0% |
| !! | AAAGAAAAAGAAAGAAGAAA+AGG | + | chr2_1:3975585-3975604 | None:intergenic | 20.0% |
| !! | TGTATATTGAAATTCAATCA+AGG | + | chr2_1:3976284-3976303 | None:intergenic | 20.0% |
| !! | ATTGAATTTCAATATACAAC+AGG | - | chr2_1:3976286-3976305 | Msa0188780:CDS | 20.0% |
| !!! | GTAATTAATAGATGGTATTT+TGG | + | chr2_1:3976512-3976531 | None:intergenic | 20.0% |
| !! | AATACCATCTATTAATTACA+AGG | - | chr2_1:3976513-3976532 | Msa0188780:five_prime_UTR | 20.0% |
| !! | AAGAAAAAGAAAGAAGAAAA+GGG | + | chr2_1:3975584-3975603 | None:intergenic | 20.0% |
| !! | AAAGAAAAAGAAAGAAGAAA+AGG | + | chr2_1:3975585-3975604 | None:intergenic | 20.0% |
| !! | TGTATATTGAAATTCAATCA+AGG | + | chr2_1:3976284-3976303 | None:intergenic | 20.0% |
| !! | ATTGAATTTCAATATACAAC+AGG | - | chr2_1:3976286-3976305 | Msa0188780:CDS | 20.0% |
| !!! | GTAATTAATAGATGGTATTT+TGG | + | chr2_1:3976512-3976531 | None:intergenic | 20.0% |
| !! | AATACCATCTATTAATTACA+AGG | - | chr2_1:3976513-3976532 | Msa0188780:five_prime_UTR | 20.0% |
| !!! | GTGAAAGAAAAAGTATTAAG+CGG | - | chr2_1:3975246-3975265 | Msa0188780:three_prime_UTR | 25.0% |
| ! | CAATAATCAGAAGTTTAAAC+AGG | + | chr2_1:3975449-3975468 | None:intergenic | 25.0% |
| ! | CTGTTTAAACTTCTGATTAT+TGG | - | chr2_1:3975447-3975466 | Msa0188780:intron | 25.0% |
| !! | CTTCTTTCTTTTTCTTTTTC+AGG | - | chr2_1:3975588-3975607 | Msa0188780:CDS | 25.0% |
| ! | ATTAAAAAAGCAAAGCAAAG+CGG | + | chr2_1:3975811-3975830 | None:intergenic | 25.0% |
| !! | TCTACTTTACTTTGTTTAGT+GGG | - | chr2_1:3975865-3975884 | Msa0188780:CDS | 25.0% |
| ! | AATTTCAATATACAACAGGA+TGG | - | chr2_1:3976290-3976309 | Msa0188780:CDS | 25.0% |
| ! | ATTTCAATATACAACAGGAT+GGG | - | chr2_1:3976291-3976310 | Msa0188780:CDS | 25.0% |
| !!! | TATTCGCGTCATTTTTATTT+CGG | - | chr2_1:3976542-3976561 | Msa0188780:five_prime_UTR | 25.0% |
| ! | AGCATCATTTATTAGTTACA+AGG | - | chr2_1:3976580-3976599 | Msa0188780:five_prime_UTR | 25.0% |
| !!! | GTGAAAGAAAAAGTATTAAG+CGG | - | chr2_1:3975246-3975265 | Msa0188780:three_prime_UTR | 25.0% |
| ! | CAATAATCAGAAGTTTAAAC+AGG | + | chr2_1:3975449-3975468 | None:intergenic | 25.0% |
| ! | CTGTTTAAACTTCTGATTAT+TGG | - | chr2_1:3975447-3975466 | Msa0188780:intron | 25.0% |
| !! | CTTCTTTCTTTTTCTTTTTC+AGG | - | chr2_1:3975588-3975607 | Msa0188780:CDS | 25.0% |
| ! | ATTAAAAAAGCAAAGCAAAG+CGG | + | chr2_1:3975811-3975830 | None:intergenic | 25.0% |
| !! | TCTACTTTACTTTGTTTAGT+GGG | - | chr2_1:3975865-3975884 | Msa0188780:CDS | 25.0% |
| ! | AATTTCAATATACAACAGGA+TGG | - | chr2_1:3976290-3976309 | Msa0188780:CDS | 25.0% |
| ! | ATTTCAATATACAACAGGAT+GGG | - | chr2_1:3976291-3976310 | Msa0188780:CDS | 25.0% |
| !!! | TATTCGCGTCATTTTTATTT+CGG | - | chr2_1:3976542-3976561 | Msa0188780:five_prime_UTR | 25.0% |
| ! | AGCATCATTTATTAGTTACA+AGG | - | chr2_1:3976580-3976599 | Msa0188780:five_prime_UTR | 25.0% |
| !! | AAAGAAAAAGTATTAAGCGG+CGG | - | chr2_1:3975249-3975268 | Msa0188780:three_prime_UTR | 30.0% |
| TGAATTGAATTGAAGACGAA+AGG | - | chr2_1:3975308-3975327 | Msa0188780:three_prime_UTR | 30.0% | |
| !! | CAACGAATAGTAAGTTTTGT+TGG | - | chr2_1:3975352-3975371 | Msa0188780:exon | 30.0% |
| !!! | GGGTTTTGTTTTGTTTTGTT+TGG | + | chr2_1:3975564-3975583 | None:intergenic | 30.0% |
| !!! | ACTACTCATTGCTATTTTGA+TGG | - | chr2_1:3975714-3975733 | Msa0188780:CDS | 30.0% |
| ! | CTCTACTTTACTTTGTTTAG+TGG | - | chr2_1:3975864-3975883 | Msa0188780:CDS | 30.0% |
| ATTACTAGCAGTTACTATAG+AGG | - | chr2_1:3975917-3975936 | Msa0188780:intron | 30.0% | |
| GTTTCAACAATGTTAAACAG+TGG | - | chr2_1:3975984-3976003 | Msa0188780:CDS | 30.0% | |
| GAGTTACTTGTTCTTAATCT+CGG | + | chr2_1:3976203-3976222 | None:intergenic | 30.0% | |
| AATTCAATCAAGGTCCAATA+AGG | + | chr2_1:3976274-3976293 | None:intergenic | 30.0% | |
| CCATCTATGTTATAACAACA+CGG | + | chr2_1:3976478-3976497 | None:intergenic | 30.0% | |
| ! | TCAGCCTTGTAATTAATAGA+TGG | + | chr2_1:3976520-3976539 | None:intergenic | 30.0% |
| !! | AAAGAAAAAGTATTAAGCGG+CGG | - | chr2_1:3975249-3975268 | Msa0188780:three_prime_UTR | 30.0% |
| TGAATTGAATTGAAGACGAA+AGG | - | chr2_1:3975308-3975327 | Msa0188780:three_prime_UTR | 30.0% | |
| !! | CAACGAATAGTAAGTTTTGT+TGG | - | chr2_1:3975352-3975371 | Msa0188780:exon | 30.0% |
| !!! | GGGTTTTGTTTTGTTTTGTT+TGG | + | chr2_1:3975564-3975583 | None:intergenic | 30.0% |
| !!! | ACTACTCATTGCTATTTTGA+TGG | - | chr2_1:3975714-3975733 | Msa0188780:CDS | 30.0% |
| ! | CTCTACTTTACTTTGTTTAG+TGG | - | chr2_1:3975864-3975883 | Msa0188780:CDS | 30.0% |
| ATTACTAGCAGTTACTATAG+AGG | - | chr2_1:3975917-3975936 | Msa0188780:intron | 30.0% | |
| GTTTCAACAATGTTAAACAG+TGG | - | chr2_1:3975984-3976003 | Msa0188780:CDS | 30.0% | |
| GAGTTACTTGTTCTTAATCT+CGG | + | chr2_1:3976203-3976222 | None:intergenic | 30.0% | |
| AATTCAATCAAGGTCCAATA+AGG | + | chr2_1:3976274-3976293 | None:intergenic | 30.0% | |
| CCATCTATGTTATAACAACA+CGG | + | chr2_1:3976478-3976497 | None:intergenic | 30.0% | |
| ! | TCAGCCTTGTAATTAATAGA+TGG | + | chr2_1:3976520-3976539 | None:intergenic | 30.0% |
| !! | AAGAAAAAGTATTAAGCGGC+GGG | - | chr2_1:3975250-3975269 | Msa0188780:three_prime_UTR | 35.0% |
| ATTATTGGAGATTCCTCTGT+TGG | - | chr2_1:3975462-3975481 | Msa0188780:intron | 35.0% | |
| ATCAGAACTGTTGAACTTGA+AGG | - | chr2_1:3975747-3975766 | Msa0188780:CDS | 35.0% | |
| TTTATTCCCAACAAGAAGCT+TGG | + | chr2_1:3976047-3976066 | None:intergenic | 35.0% | |
| AGAAAGAGTTGAGAAAGAGA+TGG | + | chr2_1:3976425-3976444 | None:intergenic | 35.0% | |
| ! | CCGTGTTGTTATAACATAGA+TGG | - | chr2_1:3976475-3976494 | Msa0188780:five_prime_UTR | 35.0% |
| TAAGCACAAACAACAACTGA+AGG | - | chr2_1:3976635-3976654 | Msa0188780:five_prime_UTR | 35.0% | |
| !! | AAGAAAAAGTATTAAGCGGC+GGG | - | chr2_1:3975250-3975269 | Msa0188780:three_prime_UTR | 35.0% |
| ATTATTGGAGATTCCTCTGT+TGG | - | chr2_1:3975462-3975481 | Msa0188780:intron | 35.0% | |
| ATCAGAACTGTTGAACTTGA+AGG | - | chr2_1:3975747-3975766 | Msa0188780:CDS | 35.0% | |
| TTTATTCCCAACAAGAAGCT+TGG | + | chr2_1:3976047-3976066 | None:intergenic | 35.0% | |
| AGAAAGAGTTGAGAAAGAGA+TGG | + | chr2_1:3976425-3976444 | None:intergenic | 35.0% | |
| ! | CCGTGTTGTTATAACATAGA+TGG | - | chr2_1:3976475-3976494 | Msa0188780:five_prime_UTR | 35.0% |
| TAAGCACAAACAACAACTGA+AGG | - | chr2_1:3976635-3976654 | Msa0188780:five_prime_UTR | 35.0% | |
| ! | CAAGCAAGATTTTCCAACAG+AGG | + | chr2_1:3975478-3975497 | None:intergenic | 40.0% |
| GACACCTACATTAGTACCAT+CGG | - | chr2_1:3975625-3975644 | Msa0188780:CDS | 40.0% | |
| AATTACGAAATCAACGCCGA+TGG | + | chr2_1:3975644-3975663 | None:intergenic | 40.0% | |
| TTTGTTTAGTGGGATACTGC+TGG | - | chr2_1:3975875-3975894 | Msa0188780:intron | 40.0% | |
| ! | AGTTACTATAGAGGAGCACA+TGG | - | chr2_1:3975926-3975945 | Msa0188780:intron | 40.0% |
| !! | GGTTTGAACAAGCTTGTTGT+GGG | + | chr2_1:3976080-3976099 | None:intergenic | 40.0% |
| TAGCACTTGTCTCAAGGAAA+GGG | + | chr2_1:3976138-3976157 | None:intergenic | 40.0% | |
| TTAGCACTTGTCTCAAGGAA+AGG | + | chr2_1:3976139-3976158 | None:intergenic | 40.0% | |
| AGTCTTTAGCACTTGTCTCA+AGG | + | chr2_1:3976144-3976163 | None:intergenic | 40.0% | |
| TCTCTCTCACTCAACCTTAT+TGG | - | chr2_1:3976257-3976276 | Msa0188780:intron | 40.0% | |
| ! | CTTAGTACCAGTTGTTGGTT+GGG | + | chr2_1:3976319-3976338 | None:intergenic | 40.0% |
| ACTTAGTACCAGTTGTTGGT+TGG | + | chr2_1:3976320-3976339 | None:intergenic | 40.0% | |
| AGCAGAATCTGTTCAGATCA+AGG | - | chr2_1:3976344-3976363 | Msa0188780:intron | 40.0% | |
| GCAGAATCTGTTCAGATCAA+GGG | - | chr2_1:3976345-3976364 | Msa0188780:intron | 40.0% | |
| CAGAATCTGTTCAGATCAAG+GGG | - | chr2_1:3976346-3976365 | Msa0188780:intron | 40.0% | |
| TTGAACCTAACCACAACAGT+TGG | + | chr2_1:3976391-3976410 | None:intergenic | 40.0% | |
| ! | CAAGCAAGATTTTCCAACAG+AGG | + | chr2_1:3975478-3975497 | None:intergenic | 40.0% |
| GACACCTACATTAGTACCAT+CGG | - | chr2_1:3975625-3975644 | Msa0188780:CDS | 40.0% | |
| AATTACGAAATCAACGCCGA+TGG | + | chr2_1:3975644-3975663 | None:intergenic | 40.0% | |
| TTTGTTTAGTGGGATACTGC+TGG | - | chr2_1:3975875-3975894 | Msa0188780:intron | 40.0% | |
| ! | AGTTACTATAGAGGAGCACA+TGG | - | chr2_1:3975926-3975945 | Msa0188780:intron | 40.0% |
| !! | GGTTTGAACAAGCTTGTTGT+GGG | + | chr2_1:3976080-3976099 | None:intergenic | 40.0% |
| TAGCACTTGTCTCAAGGAAA+GGG | + | chr2_1:3976138-3976157 | None:intergenic | 40.0% | |
| TTAGCACTTGTCTCAAGGAA+AGG | + | chr2_1:3976139-3976158 | None:intergenic | 40.0% | |
| AGTCTTTAGCACTTGTCTCA+AGG | + | chr2_1:3976144-3976163 | None:intergenic | 40.0% | |
| TCTCTCTCACTCAACCTTAT+TGG | - | chr2_1:3976257-3976276 | Msa0188780:intron | 40.0% | |
| ! | CTTAGTACCAGTTGTTGGTT+GGG | + | chr2_1:3976319-3976338 | None:intergenic | 40.0% |
| ACTTAGTACCAGTTGTTGGT+TGG | + | chr2_1:3976320-3976339 | None:intergenic | 40.0% | |
| AGCAGAATCTGTTCAGATCA+AGG | - | chr2_1:3976344-3976363 | Msa0188780:intron | 40.0% | |
| GCAGAATCTGTTCAGATCAA+GGG | - | chr2_1:3976345-3976364 | Msa0188780:intron | 40.0% | |
| CAGAATCTGTTCAGATCAAG+GGG | - | chr2_1:3976346-3976365 | Msa0188780:intron | 40.0% | |
| TTGAACCTAACCACAACAGT+TGG | + | chr2_1:3976391-3976410 | None:intergenic | 40.0% | |
| AACGCCGATGGTACTAATGT+AGG | + | chr2_1:3975632-3975651 | None:intergenic | 45.0% | |
| AGAACTGACAATCTGCAGCT+TGG | + | chr2_1:3975781-3975800 | None:intergenic | 45.0% | |
| TCTGTCTCCAAGCTTCTTGT+TGG | - | chr2_1:3976037-3976056 | Msa0188780:intron | 45.0% | |
| CTGTCTCCAAGCTTCTTGTT+GGG | - | chr2_1:3976038-3976057 | Msa0188780:intron | 45.0% | |
| !! | GGGTTTGAACAAGCTTGTTG+TGG | + | chr2_1:3976081-3976100 | None:intergenic | 45.0% |
| TCTCAAGGAAAGGGATAGCA+AGG | + | chr2_1:3976129-3976148 | None:intergenic | 45.0% | |
| CGAGCAGGCTTTCTTAACTA+TGG | - | chr2_1:3976174-3976193 | Msa0188780:intron | 45.0% | |
| ! | GCTGACTTAGTACCAGTTGT+TGG | + | chr2_1:3976324-3976343 | None:intergenic | 45.0% |
| ! | CACAACAGTTGGTGTTCTGT+GGG | + | chr2_1:3976380-3976399 | None:intergenic | 45.0% |
| GAACACCAACTGTTGTGGTT+AGG | - | chr2_1:3976383-3976402 | Msa0188780:intron | 45.0% | |
| AACGCCGATGGTACTAATGT+AGG | + | chr2_1:3975632-3975651 | None:intergenic | 45.0% | |
| AGAACTGACAATCTGCAGCT+TGG | + | chr2_1:3975781-3975800 | None:intergenic | 45.0% | |
| TCTGTCTCCAAGCTTCTTGT+TGG | - | chr2_1:3976037-3976056 | Msa0188780:intron | 45.0% | |
| CTGTCTCCAAGCTTCTTGTT+GGG | - | chr2_1:3976038-3976057 | Msa0188780:intron | 45.0% | |
| !! | GGGTTTGAACAAGCTTGTTG+TGG | + | chr2_1:3976081-3976100 | None:intergenic | 45.0% |
| TCTCAAGGAAAGGGATAGCA+AGG | + | chr2_1:3976129-3976148 | None:intergenic | 45.0% | |
| CGAGCAGGCTTTCTTAACTA+TGG | - | chr2_1:3976174-3976193 | Msa0188780:intron | 45.0% | |
| ! | GCTGACTTAGTACCAGTTGT+TGG | + | chr2_1:3976324-3976343 | None:intergenic | 45.0% |
| ! | CACAACAGTTGGTGTTCTGT+GGG | + | chr2_1:3976380-3976399 | None:intergenic | 45.0% |
| GAACACCAACTGTTGTGGTT+AGG | - | chr2_1:3976383-3976402 | Msa0188780:intron | 45.0% | |
| !!! | GATTTTAAAAAAAAAAAAAA+AGG | - | chr2_1:3975165-3975184 | Msa0188780:three_prime_UTR | 5.0% |
| !!! | GATTTTAAAAAAAAAAAAAA+AGG | - | chr2_1:3975165-3975184 | Msa0188780:three_prime_UTR | 5.0% |
| TTAGTGGGATACTGCTGGAC+AGG | - | chr2_1:3975880-3975899 | Msa0188780:intron | 50.0% | |
| TGTTCAAACCCACACTGCCA+AGG | - | chr2_1:3976090-3976109 | Msa0188780:intron | 50.0% | |
| AAGGTGATCCGCAAAAGCCT+TGG | + | chr2_1:3976110-3976129 | None:intergenic | 50.0% | |
| AGACTCCATCAATGTCGAGC+AGG | - | chr2_1:3976159-3976178 | Msa0188780:intron | 50.0% | |
| GAAAGCCTGCTCGACATTGA+TGG | + | chr2_1:3976167-3976186 | None:intergenic | 50.0% | |
| ATGGGAACCCAACCAACAAC+TGG | - | chr2_1:3976309-3976328 | Msa0188780:CDS | 50.0% | |
| ! | CAGTTGGTGTTCTGTGGGAT+TGG | + | chr2_1:3976375-3976394 | None:intergenic | 50.0% |
| ! | CCACAACAGTTGGTGTTCTG+TGG | + | chr2_1:3976381-3976400 | None:intergenic | 50.0% |
| CCACAGAACACCAACTGTTG+TGG | - | chr2_1:3976378-3976397 | Msa0188780:intron | 50.0% | |
| TTAGTGGGATACTGCTGGAC+AGG | - | chr2_1:3975880-3975899 | Msa0188780:intron | 50.0% | |
| TGTTCAAACCCACACTGCCA+AGG | - | chr2_1:3976090-3976109 | Msa0188780:intron | 50.0% | |
| AAGGTGATCCGCAAAAGCCT+TGG | + | chr2_1:3976110-3976129 | None:intergenic | 50.0% | |
| AGACTCCATCAATGTCGAGC+AGG | - | chr2_1:3976159-3976178 | Msa0188780:intron | 50.0% | |
| GAAAGCCTGCTCGACATTGA+TGG | + | chr2_1:3976167-3976186 | None:intergenic | 50.0% | |
| ATGGGAACCCAACCAACAAC+TGG | - | chr2_1:3976309-3976328 | Msa0188780:CDS | 50.0% | |
| ! | CAGTTGGTGTTCTGTGGGAT+TGG | + | chr2_1:3976375-3976394 | None:intergenic | 50.0% |
| ! | CCACAACAGTTGGTGTTCTG+TGG | + | chr2_1:3976381-3976400 | None:intergenic | 50.0% |
| CCACAGAACACCAACTGTTG+TGG | - | chr2_1:3976378-3976397 | Msa0188780:intron | 50.0% | |
| !! | GTATTAAGCGGCGGGTTGAG+TGG | - | chr2_1:3975258-3975277 | Msa0188780:three_prime_UTR | 55.0% |
| !! | GGCGGGTTGAGTGGAGAATT+GGG | - | chr2_1:3975267-3975286 | Msa0188780:three_prime_UTR | 55.0% |
| CGCAAAAGCCTTGGCAGTGT+GGG | + | chr2_1:3976101-3976120 | None:intergenic | 55.0% | |
| ! | CCACACTGCCAAGGCTTTTG+CGG | - | chr2_1:3976099-3976118 | Msa0188780:intron | 55.0% |
| !! | GTATTAAGCGGCGGGTTGAG+TGG | - | chr2_1:3975258-3975277 | Msa0188780:three_prime_UTR | 55.0% |
| !! | GGCGGGTTGAGTGGAGAATT+GGG | - | chr2_1:3975267-3975286 | Msa0188780:three_prime_UTR | 55.0% |
| CGCAAAAGCCTTGGCAGTGT+GGG | + | chr2_1:3976101-3976120 | None:intergenic | 55.0% | |
| ! | CCACACTGCCAAGGCTTTTG+CGG | - | chr2_1:3976099-3976118 | Msa0188780:intron | 55.0% |
| !! | CGGCGGGTTGAGTGGAGAAT+TGG | - | chr2_1:3975266-3975285 | Msa0188780:three_prime_UTR | 60.0% |
| CCGCAAAAGCCTTGGCAGTG+TGG | + | chr2_1:3976102-3976121 | None:intergenic | 60.0% | |
| !! | CGGCGGGTTGAGTGGAGAAT+TGG | - | chr2_1:3975266-3975285 | Msa0188780:three_prime_UTR | 60.0% |
| CCGCAAAAGCCTTGGCAGTG+TGG | + | chr2_1:3976102-3976121 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 3975115 | 3976658 | 3975115 | ID=Msa0188780;Name=Msa0188780 |
| chr2_1 | mRNA | 3975115 | 3976658 | 3975115 | ID=Msa0188780-mRNA-1;Parent=Msa0188780;Name=Msa0188780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=199|1|1|1|0.83|0.71|7|254|204 |
| chr2_1 | exon | 3975115 | 3975465 | 3975115 | ID=Msa0188780-mRNA-1:exon:1714;Parent=Msa0188780-mRNA-1 |
| chr2_1 | exon | 3975558 | 3975889 | 3975558 | ID=Msa0188780-mRNA-1:exon:1713;Parent=Msa0188780-mRNA-1 |
| chr2_1 | exon | 3975982 | 3976029 | 3975982 | ID=Msa0188780-mRNA-1:exon:1712;Parent=Msa0188780-mRNA-1 |
| chr2_1 | exon | 3976116 | 3976163 | 3976116 | ID=Msa0188780-mRNA-1:exon:1711;Parent=Msa0188780-mRNA-1 |
| chr2_1 | exon | 3976261 | 3976333 | 3976261 | ID=Msa0188780-mRNA-1:exon:1710;Parent=Msa0188780-mRNA-1 |
| chr2_1 | exon | 3976413 | 3976601 | 3976413 | ID=Msa0188780-mRNA-1:exon:1709;Parent=Msa0188780-mRNA-1 |
| chr2_1 | exon | 3976632 | 3976658 | 3976632 | ID=Msa0188780-mRNA-1:exon:1708;Parent=Msa0188780-mRNA-1 |
| chr2_1 | five_prime_UTR | 3976632 | 3976658 | 3976632 | ID=Msa0188780-mRNA-1:five_prime_utr;Parent=Msa0188780-mRNA-1 |
| chr2_1 | five_prime_UTR | 3976430 | 3976601 | 3976430 | ID=Msa0188780-mRNA-1:five_prime_utr;Parent=Msa0188780-mRNA-1 |
| chr2_1 | CDS | 3976413 | 3976429 | 3976413 | ID=Msa0188780-mRNA-1:cds;Parent=Msa0188780-mRNA-1 |
| chr2_1 | CDS | 3976261 | 3976333 | 3976261 | ID=Msa0188780-mRNA-1:cds;Parent=Msa0188780-mRNA-1 |
| chr2_1 | CDS | 3976116 | 3976163 | 3976116 | ID=Msa0188780-mRNA-1:cds;Parent=Msa0188780-mRNA-1 |
| chr2_1 | CDS | 3975982 | 3976029 | 3975982 | ID=Msa0188780-mRNA-1:cds;Parent=Msa0188780-mRNA-1 |
| chr2_1 | CDS | 3975558 | 3975889 | 3975558 | ID=Msa0188780-mRNA-1:cds;Parent=Msa0188780-mRNA-1 |
| chr2_1 | CDS | 3975369 | 3975465 | 3975369 | ID=Msa0188780-mRNA-1:cds;Parent=Msa0188780-mRNA-1 |
| chr2_1 | three_prime_UTR | 3975115 | 3975368 | 3975115 | ID=Msa0188780-mRNA-1:three_prime_utr;Parent=Msa0188780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
