Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190360 | ABN05724.1 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 4.32e-39 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190360 | A2Q1A7 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 2.06e-39 | 133 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048000 | Msa0190360 | 0.814803 | 1.278959e-51 | -8.615850e-47 |
| Msa0050730 | Msa0190360 | 0.864926 | 8.556159e-65 | -8.615850e-47 |
| Msa0050760 | Msa0190360 | 0.857338 | 1.747345e-62 | -8.615850e-47 |
| Msa0060600 | Msa0190360 | 0.800592 | 1.340650e-48 | -8.615850e-47 |
| Msa0140910 | Msa0190360 | 0.814489 | 1.500986e-51 | -8.615850e-47 |
| Msa0190360 | Msa0260810 | 0.816560 | 5.192587e-52 | -8.615850e-47 |
| Msa0190360 | Msa0272000 | 0.937579 | 2.755079e-98 | -8.615850e-47 |
| Msa0190360 | Msa0288320 | 0.850010 | 2.238322e-60 | -8.615850e-47 |
| Msa0190360 | Msa0311100 | 0.918717 | 1.103524e-86 | -8.615850e-47 |
| Msa0190360 | Msa0370870 | 0.820645 | 6.149670e-53 | -8.615850e-47 |
| Msa0190360 | Msa0464900 | 0.830616 | 2.657043e-55 | -8.615850e-47 |
| Msa0190360 | Msa0471790 | 0.806342 | 8.616662e-50 | -8.615850e-47 |
| Msa0190360 | Msa0524200 | -0.819179 | 1.330761e-52 | -8.615850e-47 |
| Msa0190360 | Msa0622340 | 0.832346 | 9.961420e-56 | -8.615850e-47 |
| Msa0190360 | Msa0908170 | 0.857275 | 1.823512e-62 | -8.615850e-47 |
| Msa0190360 | Msa0944730 | 0.805122 | 1.554864e-49 | -8.615850e-47 |
| Msa0190360 | Msa1087470 | 0.814587 | 1.428353e-51 | -8.615850e-47 |
| Msa0190360 | Msa1218650 | 0.826005 | 3.439576e-54 | -8.615850e-47 |
| Msa0190360 | Msa1367390 | -0.817286 | 3.567108e-52 | -8.615850e-47 |
| Msa0190360 | Msa1398860 | 0.811594 | 6.475083e-51 | -8.615850e-47 |
| Msa0190360 | Msa1404540 | 0.819502 | 1.122903e-52 | -8.615850e-47 |
| Msa0190360 | Msa1408790 | 0.802774 | 4.782479e-49 | -8.615850e-47 |
| Msa0190360 | Msa1419110 | 0.831035 | 2.096909e-55 | -8.615850e-47 |
| Msa0190360 | Msa1431060 | 0.824629 | 7.275958e-54 | -8.615850e-47 |
| Msa0190360 | Msa1436040 | 0.801197 | 1.008615e-48 | -8.615850e-47 |
| Msa0190360 | Msa1439230 | 0.828772 | 7.466320e-55 | -8.615850e-47 |
| Msa0190360 | Msa1440600 | 0.856551 | 2.980092e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190360 | MtrunA17_Chr2g0279941 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 3.98e-43 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTCTGCCATATATATT+TGG | 0.170915 | 2_1:+5873257 | None:intergenic |
| ATATTCCACAACTTTAATAA+TGG | 0.294529 | 2_1:+5873194 | None:intergenic |
| TATACTCATACACATGCTTT+AGG | 0.317198 | 2_1:+5874115 | None:intergenic |
| AAAATATAACCAAATATATA+TGG | 0.338136 | 2_1:-5873266 | Msa0190360:three_prime_UTR |
| AAAGAAAAGGAAGATAATAA+AGG | 0.362142 | 2_1:+5873291 | None:intergenic |
| TACTCACTCATACAATTAAT+AGG | 0.364891 | 2_1:+5873377 | None:intergenic |
| AAGAAAAGGAAGATAATAAA+GGG | 0.377219 | 2_1:+5873292 | None:intergenic |
| ACCGGAGGTGGTCCTTGATA+AGG | 0.377579 | 2_1:+5873774 | None:intergenic |
| GCTAATGCATTTCACCAAAC+TGG | 0.387821 | 2_1:-5873479 | Msa0190360:exon |
| TATCATATAATATCAAATAT+TGG | 0.395323 | 2_1:+5873349 | None:intergenic |
| GAGATGAGTGAGATCAAATA+TGG | 0.409886 | 2_1:-5874003 | Msa0190360:CDS |
| TATGTACCTTGAGCAGGATA+TGG | 0.426594 | 2_1:+5873976 | None:intergenic |
| TTTGTGTTGCTGTTGCCTCT+TGG | 0.433493 | 2_1:-5873538 | Msa0190360:CDS |
| GGTGGTGCCGCCACCGGAGG+TGG | 0.452814 | 2_1:+5873762 | None:intergenic |
| CCGGAGGTGGTCCTTGATAA+GGG | 0.453222 | 2_1:+5873775 | None:intergenic |
| AGTACATTTATTATCTGAAA+GGG | 0.466301 | 2_1:-5873320 | Msa0190360:three_prime_UTR |
| CCCTTATCAAGGACCACCTC+CGG | 0.501946 | 2_1:-5873775 | Msa0190360:CDS |
| TTCATACTAGGCCCTTATCA+AGG | 0.506361 | 2_1:-5873786 | Msa0190360:intron |
| TCAAGGACCACCTCCGGTGG+CGG | 0.518251 | 2_1:-5873769 | Msa0190360:CDS |
| ATGGTGTATGTACCTTGAGC+AGG | 0.537878 | 2_1:+5873970 | None:intergenic |
| TGCGGTGGTGCCGCCACCGG+AGG | 0.538797 | 2_1:+5873759 | None:intergenic |
| TATTGCGGTGGTGCCGCCAC+CGG | 0.539716 | 2_1:+5873756 | None:intergenic |
| TAGTACATTTATTATCTGAA+AGG | 0.542095 | 2_1:-5873321 | Msa0190360:three_prime_UTR |
| GGCTATCCATATCCTGCTCA+AGG | 0.571306 | 2_1:-5873982 | Msa0190360:intron |
| TACCATCCCTCAAGAAAACC+CGG | 0.577880 | 2_1:+5873699 | None:intergenic |
| AACAGCAACACAAAGCTGCT+AGG | 0.601258 | 2_1:+5873547 | None:intergenic |
| AGAAAAGGAAGATAATAAAG+GGG | 0.613618 | 2_1:+5873293 | None:intergenic |
| TTATCAAGGACCACCTCCGG+TGG | 0.637488 | 2_1:-5873772 | Msa0190360:CDS |
| CACAGCAGCACTCATCCAAG+AGG | 0.685776 | 2_1:+5873523 | None:intergenic |
| GGAGCAGCATAGTATTGCGG+TGG | 0.697423 | 2_1:+5873744 | None:intergenic |
| GGTGGAGCAGCATAGTATTG+CGG | 0.699649 | 2_1:+5873741 | None:intergenic |
| GGAATATAGATACAATAACG+TGG | 0.751387 | 2_1:-5873178 | Msa0190360:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTCAAGAATAATTTT+AGG | - | chr2_1:5873246-5873265 | Msa0190360:three_prime_UTR | 10.0% |
| !! | TATCATATAATATCAAATAT+TGG | + | chr2_1:5873947-5873966 | None:intergenic | 10.0% |
| !! | AAAATATAACCAAATATATA+TGG | - | chr2_1:5874027-5874046 | Msa0190360:five_prime_UTR | 10.0% |
| !!! | TTTATTTCAAGAATAATTTT+AGG | - | chr2_1:5873246-5873265 | Msa0190360:three_prime_UTR | 10.0% |
| !! | TATCATATAATATCAAATAT+TGG | + | chr2_1:5873947-5873966 | None:intergenic | 10.0% |
| !! | AAAATATAACCAAATATATA+TGG | - | chr2_1:5874027-5874046 | Msa0190360:five_prime_UTR | 10.0% |
| !!! | AAGTTTTAGTATATAATTTG+AGG | + | chr2_1:5873367-5873386 | None:intergenic | 15.0% |
| !! | GTTTCAATATTGTAATAAAA+AGG | + | chr2_1:5873407-5873426 | None:intergenic | 15.0% |
| !! | AAAAAAAATACATTGTTTAG+TGG | - | chr2_1:5873887-5873906 | Msa0190360:intron | 15.0% |
| !!! | GGTTATATTTTTAAAAGAAA+AGG | + | chr2_1:5874018-5874037 | None:intergenic | 15.0% |
| !!! | AACTTTAATAATGGAAAAAA+TGG | + | chr2_1:5874093-5874112 | None:intergenic | 15.0% |
| !!! | AAGTTTTAGTATATAATTTG+AGG | + | chr2_1:5873367-5873386 | None:intergenic | 15.0% |
| !! | GTTTCAATATTGTAATAAAA+AGG | + | chr2_1:5873407-5873426 | None:intergenic | 15.0% |
| !! | AAAAAAAATACATTGTTTAG+TGG | - | chr2_1:5873887-5873906 | Msa0190360:intron | 15.0% |
| !!! | GGTTATATTTTTAAAAGAAA+AGG | + | chr2_1:5874018-5874037 | None:intergenic | 15.0% |
| !!! | AACTTTAATAATGGAAAAAA+TGG | + | chr2_1:5874093-5874112 | None:intergenic | 15.0% |
| !!! | AAGAACTTGTAATTTTATGT+TGG | + | chr2_1:5873227-5873246 | None:intergenic | 20.0% |
| !! | GAATGAGAAATATGTATATA+TGG | + | chr2_1:5873345-5873364 | None:intergenic | 20.0% |
| !!! | TTGTTGTTATATTTCATACT+AGG | - | chr2_1:5873495-5873514 | Msa0190360:exon | 20.0% |
| !! | TAAGCAATTATACACTATAT+AGG | - | chr2_1:5873615-5873634 | Msa0190360:intron | 20.0% |
| !! | AAGCAATTATACACTATATA+GGG | - | chr2_1:5873616-5873635 | Msa0190360:intron | 20.0% |
| !! | TAGTACATTTATTATCTGAA+AGG | - | chr2_1:5873972-5873991 | Msa0190360:intron | 20.0% |
| !! | AGTACATTTATTATCTGAAA+GGG | - | chr2_1:5873973-5873992 | Msa0190360:intron | 20.0% |
| !! | AAGAAAAGGAAGATAATAAA+GGG | + | chr2_1:5874004-5874023 | None:intergenic | 20.0% |
| !! | AAAGAAAAGGAAGATAATAA+AGG | + | chr2_1:5874005-5874024 | None:intergenic | 20.0% |
| !!! | TTTTTCCATTATTAAAGTTG+TGG | - | chr2_1:5874094-5874113 | Msa0190360:five_prime_UTR | 20.0% |
| !! | ATATTCCACAACTTTAATAA+TGG | + | chr2_1:5874102-5874121 | None:intergenic | 20.0% |
| !!! | AAGAACTTGTAATTTTATGT+TGG | + | chr2_1:5873227-5873246 | None:intergenic | 20.0% |
| !! | GAATGAGAAATATGTATATA+TGG | + | chr2_1:5873345-5873364 | None:intergenic | 20.0% |
| !!! | TTGTTGTTATATTTCATACT+AGG | - | chr2_1:5873495-5873514 | Msa0190360:exon | 20.0% |
| !! | TAAGCAATTATACACTATAT+AGG | - | chr2_1:5873615-5873634 | Msa0190360:intron | 20.0% |
| !! | AAGCAATTATACACTATATA+GGG | - | chr2_1:5873616-5873635 | Msa0190360:intron | 20.0% |
| !! | TAGTACATTTATTATCTGAA+AGG | - | chr2_1:5873972-5873991 | Msa0190360:intron | 20.0% |
| !! | AGTACATTTATTATCTGAAA+GGG | - | chr2_1:5873973-5873992 | Msa0190360:intron | 20.0% |
| !! | AAGAAAAGGAAGATAATAAA+GGG | + | chr2_1:5874004-5874023 | None:intergenic | 20.0% |
| !! | AAAGAAAAGGAAGATAATAA+AGG | + | chr2_1:5874005-5874024 | None:intergenic | 20.0% |
| !!! | TTTTTCCATTATTAAAGTTG+TGG | - | chr2_1:5874094-5874113 | Msa0190360:five_prime_UTR | 20.0% |
| !! | ATATTCCACAACTTTAATAA+TGG | + | chr2_1:5874102-5874121 | None:intergenic | 20.0% |
| !! | TAATTTTATGTTGGAATGCA+GGG | + | chr2_1:5873218-5873237 | None:intergenic | 25.0% |
| ! | TACTCACTCATACAATTAAT+AGG | + | chr2_1:5873919-5873938 | None:intergenic | 25.0% |
| ! | AGAAAAGGAAGATAATAAAG+GGG | + | chr2_1:5874003-5874022 | None:intergenic | 25.0% |
| !! | AATAATGGAAAAAATGGAGA+GGG | + | chr2_1:5874087-5874106 | None:intergenic | 25.0% |
| !! | TAATAATGGAAAAAATGGAG+AGG | + | chr2_1:5874088-5874107 | None:intergenic | 25.0% |
| !! | TAATTTTATGTTGGAATGCA+GGG | + | chr2_1:5873218-5873237 | None:intergenic | 25.0% |
| ! | TACTCACTCATACAATTAAT+AGG | + | chr2_1:5873919-5873938 | None:intergenic | 25.0% |
| ! | AGAAAAGGAAGATAATAAAG+GGG | + | chr2_1:5874003-5874022 | None:intergenic | 25.0% |
| !! | AATAATGGAAAAAATGGAGA+GGG | + | chr2_1:5874087-5874106 | None:intergenic | 25.0% |
| !! | TAATAATGGAAAAAATGGAG+AGG | + | chr2_1:5874088-5874107 | None:intergenic | 25.0% |
| TATACTCATACACATGCTTT+AGG | + | chr2_1:5873181-5873200 | None:intergenic | 30.0% | |
| ! | GTAATTTTATGTTGGAATGC+AGG | + | chr2_1:5873219-5873238 | None:intergenic | 30.0% |
| CAATTATACACTATATAGGG+TGG | - | chr2_1:5873619-5873638 | Msa0190360:intron | 30.0% | |
| AGCTCGCAAAAATAATAGTT+GGG | + | chr2_1:5873797-5873816 | None:intergenic | 30.0% | |
| TAGCTCGCAAAAATAATAGT+TGG | + | chr2_1:5873798-5873817 | None:intergenic | 30.0% | |
| AGCTTTCTGCCATATATATT+TGG | + | chr2_1:5874039-5874058 | None:intergenic | 30.0% | |
| AAAATGGAGAGGGTAAAAAA+TGG | + | chr2_1:5874077-5874096 | None:intergenic | 30.0% | |
| GGAATATAGATACAATAACG+TGG | - | chr2_1:5874115-5874134 | Msa0190360:five_prime_UTR | 30.0% | |
| TATACTCATACACATGCTTT+AGG | + | chr2_1:5873181-5873200 | None:intergenic | 30.0% | |
| ! | GTAATTTTATGTTGGAATGC+AGG | + | chr2_1:5873219-5873238 | None:intergenic | 30.0% |
| CAATTATACACTATATAGGG+TGG | - | chr2_1:5873619-5873638 | Msa0190360:intron | 30.0% | |
| AGCTCGCAAAAATAATAGTT+GGG | + | chr2_1:5873797-5873816 | None:intergenic | 30.0% | |
| TAGCTCGCAAAAATAATAGT+TGG | + | chr2_1:5873798-5873817 | None:intergenic | 30.0% | |
| AGCTTTCTGCCATATATATT+TGG | + | chr2_1:5874039-5874058 | None:intergenic | 30.0% | |
| AAAATGGAGAGGGTAAAAAA+TGG | + | chr2_1:5874077-5874096 | None:intergenic | 30.0% | |
| GAGATGAGTGAGATCAAATA+TGG | - | chr2_1:5873290-5873309 | Msa0190360:three_prime_UTR | 35.0% | |
| ! | CAATAGCTTCTTTTCCAGTT+TGG | + | chr2_1:5873831-5873850 | None:intergenic | 35.0% |
| GAGATGAGTGAGATCAAATA+TGG | - | chr2_1:5873290-5873309 | Msa0190360:three_prime_UTR | 35.0% | |
| ! | CAATAGCTTCTTTTCCAGTT+TGG | + | chr2_1:5873831-5873850 | None:intergenic | 35.0% |
| TATGTACCTTGAGCAGGATA+TGG | + | chr2_1:5873320-5873339 | None:intergenic | 40.0% | |
| TTCATACTAGGCCCTTATCA+AGG | - | chr2_1:5873507-5873526 | Msa0190360:CDS | 40.0% | |
| CTGCTAGGCTGCATATAATT+GGG | + | chr2_1:5873734-5873753 | None:intergenic | 40.0% | |
| GCTAATGCATTTCACCAAAC+TGG | - | chr2_1:5873814-5873833 | Msa0190360:intron | 40.0% | |
| TATGTACCTTGAGCAGGATA+TGG | + | chr2_1:5873320-5873339 | None:intergenic | 40.0% | |
| TTCATACTAGGCCCTTATCA+AGG | - | chr2_1:5873507-5873526 | Msa0190360:CDS | 40.0% | |
| CTGCTAGGCTGCATATAATT+GGG | + | chr2_1:5873734-5873753 | None:intergenic | 40.0% | |
| GCTAATGCATTTCACCAAAC+TGG | - | chr2_1:5873814-5873833 | Msa0190360:intron | 40.0% | |
| ATGGTGTATGTACCTTGAGC+AGG | + | chr2_1:5873326-5873345 | None:intergenic | 45.0% | |
| ! | AGAAAACCCGGCTCTCTTTT+TGG | + | chr2_1:5873585-5873604 | None:intergenic | 45.0% |
| TACCATCCCTCAAGAAAACC+CGG | + | chr2_1:5873597-5873616 | None:intergenic | 45.0% | |
| GCTGCTAGGCTGCATATAAT+TGG | + | chr2_1:5873735-5873754 | None:intergenic | 45.0% | |
| AACAGCAACACAAAGCTGCT+AGG | + | chr2_1:5873749-5873768 | None:intergenic | 45.0% | |
| ! | TTTGTGTTGCTGTTGCCTCT+TGG | - | chr2_1:5873755-5873774 | Msa0190360:CDS | 45.0% |
| ATGGTGTATGTACCTTGAGC+AGG | + | chr2_1:5873326-5873345 | None:intergenic | 45.0% | |
| ! | AGAAAACCCGGCTCTCTTTT+TGG | + | chr2_1:5873585-5873604 | None:intergenic | 45.0% |
| TACCATCCCTCAAGAAAACC+CGG | + | chr2_1:5873597-5873616 | None:intergenic | 45.0% | |
| GCTGCTAGGCTGCATATAAT+TGG | + | chr2_1:5873735-5873754 | None:intergenic | 45.0% | |
| AACAGCAACACAAAGCTGCT+AGG | + | chr2_1:5873749-5873768 | None:intergenic | 45.0% | |
| ! | TTTGTGTTGCTGTTGCCTCT+TGG | - | chr2_1:5873755-5873774 | Msa0190360:CDS | 45.0% |
| GGCTATCCATATCCTGCTCA+AGG | - | chr2_1:5873311-5873330 | Msa0190360:three_prime_UTR | 50.0% | |
| GGTGGAGCAGCATAGTATTG+CGG | + | chr2_1:5873555-5873574 | None:intergenic | 50.0% | |
| !!! | TCTCTTTTTGGTGGTGGTGG+TGG | + | chr2_1:5873573-5873592 | None:intergenic | 50.0% |
| ACCACCACCAAAAAGAGAGC+CGG | - | chr2_1:5873575-5873594 | Msa0190360:intron | 50.0% | |
| ! | AAACCCGGCTCTCTTTTTGG+TGG | + | chr2_1:5873582-5873601 | None:intergenic | 50.0% |
| ! | AAGAGAGCCGGGTTTTCTTG+AGG | - | chr2_1:5873587-5873606 | Msa0190360:intron | 50.0% |
| ! | AGAGAGCCGGGTTTTCTTGA+GGG | - | chr2_1:5873588-5873607 | Msa0190360:intron | 50.0% |
| GGCTATCCATATCCTGCTCA+AGG | - | chr2_1:5873311-5873330 | Msa0190360:three_prime_UTR | 50.0% | |
| GGTGGAGCAGCATAGTATTG+CGG | + | chr2_1:5873555-5873574 | None:intergenic | 50.0% | |
| !!! | TCTCTTTTTGGTGGTGGTGG+TGG | + | chr2_1:5873573-5873592 | None:intergenic | 50.0% |
| ACCACCACCAAAAAGAGAGC+CGG | - | chr2_1:5873575-5873594 | Msa0190360:intron | 50.0% | |
| ! | AAACCCGGCTCTCTTTTTGG+TGG | + | chr2_1:5873582-5873601 | None:intergenic | 50.0% |
| ! | AAGAGAGCCGGGTTTTCTTG+AGG | - | chr2_1:5873587-5873606 | Msa0190360:intron | 50.0% |
| ! | AGAGAGCCGGGTTTTCTTGA+GGG | - | chr2_1:5873588-5873607 | Msa0190360:intron | 50.0% |
| CCGGAGGTGGTCCTTGATAA+GGG | + | chr2_1:5873521-5873540 | None:intergenic | 55.0% | |
| CCCTTATCAAGGACCACCTC+CGG | - | chr2_1:5873518-5873537 | Msa0190360:CDS | 55.0% | |
| ACCGGAGGTGGTCCTTGATA+AGG | + | chr2_1:5873522-5873541 | None:intergenic | 55.0% | |
| TTATCAAGGACCACCTCCGG+TGG | - | chr2_1:5873521-5873540 | Msa0190360:CDS | 55.0% | |
| GGAGCAGCATAGTATTGCGG+TGG | + | chr2_1:5873552-5873571 | None:intergenic | 55.0% | |
| !!! | GGCTCTCTTTTTGGTGGTGG+TGG | + | chr2_1:5873576-5873595 | None:intergenic | 55.0% |
| CCACCACCAAAAAGAGAGCC+GGG | - | chr2_1:5873576-5873595 | Msa0190360:intron | 55.0% | |
| ! | AGCCGGGTTTTCTTGAGGGA+TGG | - | chr2_1:5873592-5873611 | Msa0190360:intron | 55.0% |
| CACAGCAGCACTCATCCAAG+AGG | + | chr2_1:5873773-5873792 | None:intergenic | 55.0% | |
| CCGGAGGTGGTCCTTGATAA+GGG | + | chr2_1:5873521-5873540 | None:intergenic | 55.0% | |
| CCCTTATCAAGGACCACCTC+CGG | - | chr2_1:5873518-5873537 | Msa0190360:CDS | 55.0% | |
| ACCGGAGGTGGTCCTTGATA+AGG | + | chr2_1:5873522-5873541 | None:intergenic | 55.0% | |
| TTATCAAGGACCACCTCCGG+TGG | - | chr2_1:5873521-5873540 | Msa0190360:CDS | 55.0% | |
| GGAGCAGCATAGTATTGCGG+TGG | + | chr2_1:5873552-5873571 | None:intergenic | 55.0% | |
| !!! | GGCTCTCTTTTTGGTGGTGG+TGG | + | chr2_1:5873576-5873595 | None:intergenic | 55.0% |
| CCACCACCAAAAAGAGAGCC+GGG | - | chr2_1:5873576-5873595 | Msa0190360:intron | 55.0% | |
| ! | AGCCGGGTTTTCTTGAGGGA+TGG | - | chr2_1:5873592-5873611 | Msa0190360:intron | 55.0% |
| CACAGCAGCACTCATCCAAG+AGG | + | chr2_1:5873773-5873792 | None:intergenic | 55.0% | |
| !! | CCCGGCTCTCTTTTTGGTGG+TGG | + | chr2_1:5873579-5873598 | None:intergenic | 60.0% |
| !! | CCCGGCTCTCTTTTTGGTGG+TGG | + | chr2_1:5873579-5873598 | None:intergenic | 60.0% |
| TCAAGGACCACCTCCGGTGG+CGG | - | chr2_1:5873524-5873543 | Msa0190360:CDS | 65.0% | |
| !! | TATTGCGGTGGTGCCGCCAC+CGG | + | chr2_1:5873540-5873559 | None:intergenic | 65.0% |
| TCAAGGACCACCTCCGGTGG+CGG | - | chr2_1:5873524-5873543 | Msa0190360:CDS | 65.0% | |
| !! | TATTGCGGTGGTGCCGCCAC+CGG | + | chr2_1:5873540-5873559 | None:intergenic | 65.0% |
| !!! | GGTGGTGCCGCCACCGGAGG+TGG | + | chr2_1:5873534-5873553 | None:intergenic | 80.0% |
| !!! | TGCGGTGGTGCCGCCACCGG+AGG | + | chr2_1:5873537-5873556 | None:intergenic | 80.0% |
| !!! | GGTGGTGCCGCCACCGGAGG+TGG | + | chr2_1:5873534-5873553 | None:intergenic | 80.0% |
| !!! | TGCGGTGGTGCCGCCACCGG+AGG | + | chr2_1:5873537-5873556 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 5873178 | 5874137 | 5873178 | ID=Msa0190360;Name=Msa0190360 |
| chr2_1 | mRNA | 5873178 | 5874137 | 5873178 | ID=Msa0190360-mRNA-1;Parent=Msa0190360;Name=Msa0190360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=115|1|1|1|1|1|3|319|69 |
| chr2_1 | exon | 5873178 | 5873569 | 5873178 | ID=Msa0190360-mRNA-1:exon:2640;Parent=Msa0190360-mRNA-1 |
| chr2_1 | exon | 5873702 | 5873798 | 5873702 | ID=Msa0190360-mRNA-1:exon:2639;Parent=Msa0190360-mRNA-1 |
| chr2_1 | exon | 5873983 | 5874137 | 5873983 | ID=Msa0190360-mRNA-1:exon:2638;Parent=Msa0190360-mRNA-1 |
| chr2_1 | five_prime_UTR | 5874023 | 5874137 | 5874023 | ID=Msa0190360-mRNA-1:five_prime_utr;Parent=Msa0190360-mRNA-1 |
| chr2_1 | CDS | 5873983 | 5874022 | 5873983 | ID=Msa0190360-mRNA-1:cds;Parent=Msa0190360-mRNA-1 |
| chr2_1 | CDS | 5873702 | 5873798 | 5873702 | ID=Msa0190360-mRNA-1:cds;Parent=Msa0190360-mRNA-1 |
| chr2_1 | CDS | 5873497 | 5873569 | 5873497 | ID=Msa0190360-mRNA-1:cds;Parent=Msa0190360-mRNA-1 |
| chr2_1 | three_prime_UTR | 5873178 | 5873496 | 5873178 | ID=Msa0190360-mRNA-1:three_prime_utr;Parent=Msa0190360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
