AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439230 MtrunA17_Chr4g0068291 96.537 231 8 0 1 231 1 231 9.07e-170 466
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439230 AT3G16990.1 61.187 219 85 0 12 230 2 220 3.69e-101 293

Find 70 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACATGAAGTTCATTTC+TGG 0.178089 tig0028725:+42919 Msa1439230:CDS
CCGTGGCTCTTACTGCATTT+TGG 0.179313 tig0028725:+42688 Msa1439230:CDS
CTCTCAAGGATGAAATATTA+TGG 0.227534 tig0028725:+41904 Msa1439230:CDS
TCACAAGTCTCCTTCAATTC+TGG 0.242363 tig0028725:-42774 None:intergenic
TCGATAATTCTTGTTGTTAT+CGG 0.275030 tig0028725:-41507 None:intergenic
TCTTGTTCAAAAGAAATCTT+TGG 0.283412 tig0028725:+42966 Msa1439230:three_prime_UTR
TCACGGATGGAGAGAATAAA+AGG 0.291539 tig0028725:-41652 None:intergenic
TGATGATGTGGAAGTTATAT+TGG 0.334678 tig0028725:+41869 Msa1439230:CDS
TAATTAAGCAAGTTAAATAA+AGG 0.410671 tig0028725:+43107 Msa1439230:three_prime_UTR
GTATTGTTGTGACAGGTTGC+TGG 0.411321 tig0028725:+42635 Msa1439230:intron
TTATAGCTTAAAGTAGTGTA+TGG 0.412585 tig0028725:+43045 Msa1439230:three_prime_UTR
TATATAATCGTTCAACTTTG+AGG 0.416279 tig0028725:-41473 None:intergenic
CTGGTTGCTGCGTCGTAGAT+AGG 0.419325 tig0028725:-41625 None:intergenic
TTAATTGAGTAAGCTGGATC+AGG 0.426672 tig0028725:+43079 Msa1439230:three_prime_UTR
GAGTGAAATACCCCATTTGT+TGG 0.441092 tig0028725:-41940 None:intergenic
TTACTAGAAGACACTGTTGT+TGG 0.447139 tig0028725:+41444 Msa1439230:five_prime_UTR
GATGATGTGGAAGTTATATT+GGG 0.449100 tig0028725:+41870 Msa1439230:CDS
GGAGAGAATAAAAGGGTGTC+TGG 0.461311 tig0028725:-41644 None:intergenic
AAAGGTCTACTAATGAAATC+AGG 0.461485 tig0028725:-43230 None:intergenic
TGAAGGAGACTTGTGAAAGA+TGG 0.462274 tig0028725:+42781 Msa1439230:CDS
AGATGGGGCAATGAAGGGTT+TGG 0.462366 tig0028725:+42798 Msa1439230:CDS
TGTGAAAGATGGGGCAATGA+AGG 0.463004 tig0028725:+42792 Msa1439230:CDS
ATCAGCACACTAGCAACAAA+TGG 0.470279 tig0028725:-41819 None:intergenic
GGAAGTTATATTGGGAGGTA+TGG 0.472614 tig0028725:+41878 Msa1439230:CDS
TTAAGAGAGAAGCCAACAAA+TGG 0.473045 tig0028725:+41928 Msa1439230:CDS
TAAGAGAGAAGCCAACAAAT+GGG 0.484598 tig0028725:+41929 Msa1439230:CDS
AAAGCTGAGGAGAAGAAAAT+CGG 0.488939 tig0028725:+41571 Msa1439230:CDS
GAAGGAGACTTGTGAAAGAT+GGG 0.493393 tig0028725:+42782 Msa1439230:CDS
TCTAGATTAATTGAGTAAGC+TGG 0.497732 tig0028725:+43073 Msa1439230:three_prime_UTR
CTAGAAGACACTGTTGTTGG+CGG 0.501982 tig0028725:+41447 Msa1439230:five_prime_UTR
TTTGCACACTGTATTGAAGA+AGG 0.504202 tig0028725:+42738 Msa1439230:CDS
CAAGTCTCCTTCAATTCTGG+TGG 0.526666 tig0028725:-42771 None:intergenic
TTTATTCTCTCCATCCGTGA+TGG 0.534028 tig0028725:+41655 Msa1439230:CDS
TATAGCTTAAAGTAGTGTAT+GGG 0.537297 tig0028725:+43046 Msa1439230:three_prime_UTR
AACAAGATCAAACATTTCCA+CGG 0.540534 tig0028725:-42950 None:intergenic
GGGAGGTATGGCTTCTCTCA+AGG 0.541239 tig0028725:+41890 Msa1439230:CDS
AATATAGCGGTGCAAATGGA+AGG 0.541269 tig0028725:+41373 None:intergenic
GGTGCAAATGGAAGGGGTGA+TGG 0.542858 tig0028725:+41381 None:intergenic
TGTGCTGATTAAAGCTTGCA+AGG 0.548251 tig0028725:+41833 Msa1439230:CDS
GTGAAAGATGGGGCAATGAA+GGG 0.556760 tig0028725:+42793 Msa1439230:CDS
TTCTGATGATGAGCTAAAGA+AGG 0.559001 tig0028725:+42872 Msa1439230:CDS
TAATTGAGTAAGCTGGATCA+GGG 0.561000 tig0028725:+43080 Msa1439230:three_prime_UTR
CAGAAGAAAAGAAAAGATGC+AGG 0.565864 tig0028725:+41534 Msa1439230:exon
TTCTCCTTATTAATAAAACA+TGG 0.568242 tig0028725:-43136 None:intergenic
AATCTCATTCCTTCAAAACA+TGG 0.569007 tig0028725:+41686 Msa1439230:CDS
TTGAACGGTGCCATCACGGA+TGG 0.569290 tig0028725:-41665 None:intergenic
CACGGATGGAGAGAATAAAA+GGG 0.580740 tig0028725:-41651 None:intergenic
GAATGACAGAAACATGGTTG+AGG 0.586301 tig0028725:+41593 Msa1439230:CDS
GAGATTGAACGGTGCCATCA+CGG 0.590693 tig0028725:-41669 None:intergenic
TATAGCGGTGCAAATGGAAG+GGG 0.597833 tig0028725:+41375 None:intergenic
AGTCAATCAACGCTTGCAGA+AGG 0.599951 tig0028725:+42848 Msa1439230:CDS
ATCAGATGACAGTGATGATG+TGG 0.605897 tig0028725:+41857 Msa1439230:CDS
ATATAGCGGTGCAAATGGAA+GGG 0.606921 tig0028725:+41374 None:intergenic
AAGTTTGATGAGTCAAGATG+TGG 0.608940 tig0028725:+42659 Msa1439230:CDS
GTGATGGTCTGTGTGAGGAA+AGG 0.610084 tig0028725:+41397 Msa1439230:five_prime_UTR
CTTGTTGTTATCGGTGTGTG+AGG 0.612436 tig0028725:-41498 None:intergenic
ATAATCGTTCAACTTTGAGG+TGG 0.617175 tig0028725:-41470 None:intergenic
AATAGCAAAAGCAAAAGCTG+AGG 0.623925 tig0028725:+41558 Msa1439230:CDS
CCAAAATGCAGTAAGAGCCA+CGG 0.640646 tig0028725:-42688 None:intergenic
CATTTCTGGAATATGAGCCG+TGG 0.649732 tig0028725:+42933 Msa1439230:CDS
TTGCTGCGTCGTAGATAGGA+CGG 0.651431 tig0028725:-41621 None:intergenic
AAGAGAGAAGCCAACAAATG+GGG 0.651734 tig0028725:+41930 Msa1439230:CDS
TTTGAAGGAATGAGATTGAA+CGG 0.653325 tig0028725:-41680 None:intergenic
AAATCGGAATGACAGAAACA+TGG 0.662897 tig0028725:+41587 Msa1439230:CDS
AAGGGGTGATGGTCTGTGTG+AGG 0.663954 tig0028725:+41392 Msa1439230:five_prime_UTR
AAGGAGACTTGTGAAAGATG+GGG 0.673941 tig0028725:+42783 Msa1439230:CDS
AATTGAGTAAGCTGGATCAG+GGG 0.682746 tig0028725:+43081 Msa1439230:three_prime_UTR
TCAAGATGTGGATTATACCG+TGG 0.702449 tig0028725:+42671 Msa1439230:CDS
TAAAGCGCTCACATTGCACG+TGG 0.725292 tig0028725:-41424 None:intergenic
GATGTGGAAGTTATATTGGG+AGG 0.743012 tig0028725:+41873 Msa1439230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAGCAAGTTAAATAA+AGG + tig0028725:43107-43126 Msa1439230:three_prime_UTR 15.0%
!! TAATTAAGCAAGTTAAATAA+AGG + tig0028725:43107-43126 Msa1439230:three_prime_UTR 15.0%
!!! TCAATTTATTTCAATTTTGC+AGG + tig0028725:41764-41783 Msa1439230:intron 20.0%
!!! TTCATAATGAGTTCTAATAA+CGG - tig0028725:42044-42063 None:intergenic 20.0%
!! TCAAATAAGTCAATTTAAAC+AGG - tig0028725:42126-42145 None:intergenic 20.0%
!!! AGTTGTTTTTCCATATAAAA+GGG + tig0028725:42191-42210 Msa1439230:intron 20.0%
!! CAATTATATTAATAGAGATG+TGG + tig0028725:42254-42273 Msa1439230:intron 20.0%
!!! TGTACCATGTTTTATTAATA+AGG + tig0028725:43132-43151 Msa1439230:three_prime_UTR 20.0%
!! TTCTCCTTATTAATAAAACA+TGG - tig0028725:43139-43158 None:intergenic 20.0%
!!! TCAATTTATTTCAATTTTGC+AGG + tig0028725:41764-41783 Msa1439230:intron 20.0%
!!! TTCATAATGAGTTCTAATAA+CGG - tig0028725:42044-42063 None:intergenic 20.0%
!! TCAAATAAGTCAATTTAAAC+AGG - tig0028725:42126-42145 None:intergenic 20.0%
!!! AGTTGTTTTTCCATATAAAA+GGG + tig0028725:42191-42210 Msa1439230:intron 20.0%
!! CAATTATATTAATAGAGATG+TGG + tig0028725:42254-42273 Msa1439230:intron 20.0%
!!! TGTACCATGTTTTATTAATA+AGG + tig0028725:43132-43151 Msa1439230:three_prime_UTR 20.0%
!! TTCTCCTTATTAATAAAACA+TGG - tig0028725:43139-43158 None:intergenic 20.0%
! TATATAATCGTTCAACTTTG+AGG - tig0028725:41476-41495 None:intergenic 25.0%
!!! TCGATAATTCTTGTTGTTAT+CGG - tig0028725:41510-41529 None:intergenic 25.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG - tig0028725:41978-41997 None:intergenic 25.0%
! GTTATTAGAACTCATTATGA+AGG + tig0028725:42043-42062 Msa1439230:intron 25.0%
! ACTCATTATGAAGGTTTATT+TGG + tig0028725:42052-42071 Msa1439230:intron 25.0%
! CTCATTATGAAGGTTTATTT+GGG + tig0028725:42053-42072 Msa1439230:intron 25.0%
! TCATTATGAAGGTTTATTTG+GGG + tig0028725:42054-42073 Msa1439230:intron 25.0%
!!! CAGTTGTTTTTCCATATAAA+AGG + tig0028725:42190-42209 Msa1439230:intron 25.0%
! TACATGCTCATAATTATCTA+GGG - tig0028725:42618-42637 None:intergenic 25.0%
! ATACATGCTCATAATTATCT+AGG - tig0028725:42619-42638 None:intergenic 25.0%
! TCTTGTTCAAAAGAAATCTT+TGG + tig0028725:42966-42985 Msa1439230:three_prime_UTR 25.0%
! TTATAGCTTAAAGTAGTGTA+TGG + tig0028725:43045-43064 Msa1439230:three_prime_UTR 25.0%
! TATAGCTTAAAGTAGTGTAT+GGG + tig0028725:43046-43065 Msa1439230:three_prime_UTR 25.0%
! TATATAATCGTTCAACTTTG+AGG - tig0028725:41476-41495 None:intergenic 25.0%
!!! TCGATAATTCTTGTTGTTAT+CGG - tig0028725:41510-41529 None:intergenic 25.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG - tig0028725:41978-41997 None:intergenic 25.0%
! GTTATTAGAACTCATTATGA+AGG + tig0028725:42043-42062 Msa1439230:intron 25.0%
! ACTCATTATGAAGGTTTATT+TGG + tig0028725:42052-42071 Msa1439230:intron 25.0%
! CTCATTATGAAGGTTTATTT+GGG + tig0028725:42053-42072 Msa1439230:intron 25.0%
! TCATTATGAAGGTTTATTTG+GGG + tig0028725:42054-42073 Msa1439230:intron 25.0%
!!! CAGTTGTTTTTCCATATAAA+AGG + tig0028725:42190-42209 Msa1439230:intron 25.0%
! TACATGCTCATAATTATCTA+GGG - tig0028725:42618-42637 None:intergenic 25.0%
! ATACATGCTCATAATTATCT+AGG - tig0028725:42619-42638 None:intergenic 25.0%
! TCTTGTTCAAAAGAAATCTT+TGG + tig0028725:42966-42985 Msa1439230:three_prime_UTR 25.0%
! TTATAGCTTAAAGTAGTGTA+TGG + tig0028725:43045-43064 Msa1439230:three_prime_UTR 25.0%
! TATAGCTTAAAGTAGTGTAT+GGG + tig0028725:43046-43065 Msa1439230:three_prime_UTR 25.0%
TTTGAAGGAATGAGATTGAA+CGG - tig0028725:41683-41702 None:intergenic 30.0%
AATCTCATTCCTTCAAAACA+TGG + tig0028725:41686-41705 Msa1439230:CDS 30.0%
! TGATGATGTGGAAGTTATAT+TGG + tig0028725:41869-41888 Msa1439230:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG + tig0028725:41870-41889 Msa1439230:CDS 30.0%
CTCTCAAGGATGAAATATTA+TGG + tig0028725:41904-41923 Msa1439230:CDS 30.0%
AACCTAACAAAAACTATTGC+AGG + tig0028725:41982-42001 Msa1439230:CDS 30.0%
! TACCTGCAATAGTTTTTGTT+AGG - tig0028725:41987-42006 None:intergenic 30.0%
!!! TCTAGTTTTTGCTAGTATAC+CGG + tig0028725:42096-42115 Msa1439230:intron 30.0%
TTTGACCTTATCTACTGTAT+AGG + tig0028725:42141-42160 Msa1439230:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - tig0028725:42394-42413 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - tig0028725:42395-42414 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + tig0028725:42515-42534 Msa1439230:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + tig0028725:42543-42562 Msa1439230:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + tig0028725:42544-42563 Msa1439230:intron 30.0%
ACATGCTCATAATTATCTAG+GGG - tig0028725:42617-42636 None:intergenic 30.0%
TTGAACATGAAGTTCATTTC+TGG + tig0028725:42919-42938 Msa1439230:CDS 30.0%
AACAAGATCAAACATTTCCA+CGG - tig0028725:42953-42972 None:intergenic 30.0%
TCTAGATTAATTGAGTAAGC+TGG + tig0028725:43073-43092 Msa1439230:three_prime_UTR 30.0%
AAAGGTCTACTAATGAAATC+AGG - tig0028725:43233-43252 None:intergenic 30.0%
TTTGAAGGAATGAGATTGAA+CGG - tig0028725:41683-41702 None:intergenic 30.0%
AATCTCATTCCTTCAAAACA+TGG + tig0028725:41686-41705 Msa1439230:CDS 30.0%
! TGATGATGTGGAAGTTATAT+TGG + tig0028725:41869-41888 Msa1439230:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG + tig0028725:41870-41889 Msa1439230:CDS 30.0%
CTCTCAAGGATGAAATATTA+TGG + tig0028725:41904-41923 Msa1439230:CDS 30.0%
AACCTAACAAAAACTATTGC+AGG + tig0028725:41982-42001 Msa1439230:CDS 30.0%
! TACCTGCAATAGTTTTTGTT+AGG - tig0028725:41987-42006 None:intergenic 30.0%
!!! TCTAGTTTTTGCTAGTATAC+CGG + tig0028725:42096-42115 Msa1439230:intron 30.0%
TTTGACCTTATCTACTGTAT+AGG + tig0028725:42141-42160 Msa1439230:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - tig0028725:42394-42413 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - tig0028725:42395-42414 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + tig0028725:42515-42534 Msa1439230:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + tig0028725:42543-42562 Msa1439230:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + tig0028725:42544-42563 Msa1439230:intron 30.0%
ACATGCTCATAATTATCTAG+GGG - tig0028725:42617-42636 None:intergenic 30.0%
TTGAACATGAAGTTCATTTC+TGG + tig0028725:42919-42938 Msa1439230:CDS 30.0%
AACAAGATCAAACATTTCCA+CGG - tig0028725:42953-42972 None:intergenic 30.0%
TCTAGATTAATTGAGTAAGC+TGG + tig0028725:43073-43092 Msa1439230:three_prime_UTR 30.0%
AAAGGTCTACTAATGAAATC+AGG - tig0028725:43233-43252 None:intergenic 30.0%
TTACTAGAAGACACTGTTGT+TGG + tig0028725:41444-41463 Msa1439230:five_prime_UTR 35.0%
! ATAATCGTTCAACTTTGAGG+TGG - tig0028725:41473-41492 None:intergenic 35.0%
CAGAAGAAAAGAAAAGATGC+AGG + tig0028725:41534-41553 Msa1439230:exon 35.0%
AATAGCAAAAGCAAAAGCTG+AGG + tig0028725:41558-41577 Msa1439230:CDS 35.0%
AAAGCTGAGGAGAAGAAAAT+CGG + tig0028725:41571-41590 Msa1439230:CDS 35.0%
AAATCGGAATGACAGAAACA+TGG + tig0028725:41587-41606 Msa1439230:CDS 35.0%
! TATTTCAATTTTGCAGGCTC+AGG + tig0028725:41770-41789 Msa1439230:intron 35.0%
TTAAGAGAGAAGCCAACAAA+TGG + tig0028725:41928-41947 Msa1439230:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG + tig0028725:41929-41948 Msa1439230:CDS 35.0%
! AATGAGTTCTAATAACGGCA+TGG - tig0028725:42039-42058 None:intergenic 35.0%
GTTCTCCTATACAGTAGATA+AGG - tig0028725:42149-42168 None:intergenic 35.0%
! GTTACACACACCCTTTTATA+TGG - tig0028725:42204-42223 None:intergenic 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG + tig0028725:42347-42366 Msa1439230:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG + tig0028725:42348-42367 Msa1439230:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0028725:42451-42470 Msa1439230:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0028725:42451-42470 Msa1439230:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + tig0028725:42514-42533 Msa1439230:intron 35.0%
AAGTTTGATGAGTCAAGATG+TGG + tig0028725:42659-42678 Msa1439230:CDS 35.0%
TTTGCACACTGTATTGAAGA+AGG + tig0028725:42738-42757 Msa1439230:CDS 35.0%
AAAAACACCACCAGAATTGA+AGG + tig0028725:42764-42783 Msa1439230:CDS 35.0%
! TGACTATCTTTTGCAGAGAT+TGG - tig0028725:42833-42852 None:intergenic 35.0%
! TTCTGATGATGAGCTAAAGA+AGG + tig0028725:42872-42891 Msa1439230:CDS 35.0%
TTAATTGAGTAAGCTGGATC+AGG + tig0028725:43079-43098 Msa1439230:three_prime_UTR 35.0%
TAATTGAGTAAGCTGGATCA+GGG + tig0028725:43080-43099 Msa1439230:three_prime_UTR 35.0%
TTACTAGAAGACACTGTTGT+TGG + tig0028725:41444-41463 Msa1439230:five_prime_UTR 35.0%
! ATAATCGTTCAACTTTGAGG+TGG - tig0028725:41473-41492 None:intergenic 35.0%
CAGAAGAAAAGAAAAGATGC+AGG + tig0028725:41534-41553 Msa1439230:exon 35.0%
AATAGCAAAAGCAAAAGCTG+AGG + tig0028725:41558-41577 Msa1439230:CDS 35.0%
AAAGCTGAGGAGAAGAAAAT+CGG + tig0028725:41571-41590 Msa1439230:CDS 35.0%
AAATCGGAATGACAGAAACA+TGG + tig0028725:41587-41606 Msa1439230:CDS 35.0%
! TATTTCAATTTTGCAGGCTC+AGG + tig0028725:41770-41789 Msa1439230:intron 35.0%
TTAAGAGAGAAGCCAACAAA+TGG + tig0028725:41928-41947 Msa1439230:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG + tig0028725:41929-41948 Msa1439230:CDS 35.0%
! AATGAGTTCTAATAACGGCA+TGG - tig0028725:42039-42058 None:intergenic 35.0%
GTTCTCCTATACAGTAGATA+AGG - tig0028725:42149-42168 None:intergenic 35.0%
! GTTACACACACCCTTTTATA+TGG - tig0028725:42204-42223 None:intergenic 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG + tig0028725:42347-42366 Msa1439230:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG + tig0028725:42348-42367 Msa1439230:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0028725:42451-42470 Msa1439230:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0028725:42451-42470 Msa1439230:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + tig0028725:42514-42533 Msa1439230:intron 35.0%
AAGTTTGATGAGTCAAGATG+TGG + tig0028725:42659-42678 Msa1439230:CDS 35.0%
TTTGCACACTGTATTGAAGA+AGG + tig0028725:42738-42757 Msa1439230:CDS 35.0%
AAAAACACCACCAGAATTGA+AGG + tig0028725:42764-42783 Msa1439230:CDS 35.0%
! TGACTATCTTTTGCAGAGAT+TGG - tig0028725:42833-42852 None:intergenic 35.0%
! TTCTGATGATGAGCTAAAGA+AGG + tig0028725:42872-42891 Msa1439230:CDS 35.0%
TTAATTGAGTAAGCTGGATC+AGG + tig0028725:43079-43098 Msa1439230:three_prime_UTR 35.0%
TAATTGAGTAAGCTGGATCA+GGG + tig0028725:43080-43099 Msa1439230:three_prime_UTR 35.0%
GAATGACAGAAACATGGTTG+AGG + tig0028725:41593-41612 Msa1439230:CDS 40.0%
CACGGATGGAGAGAATAAAA+GGG - tig0028725:41654-41673 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG - tig0028725:41655-41674 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG + tig0028725:41655-41674 Msa1439230:CDS 40.0%
!! ACTTACGAGCCATGTTTTGA+AGG - tig0028725:41698-41717 None:intergenic 40.0%
ATCAGCACACTAGCAACAAA+TGG - tig0028725:41822-41841 None:intergenic 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG + tig0028725:41833-41852 Msa1439230:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG + tig0028725:41857-41876 Msa1439230:CDS 40.0%
GATGTGGAAGTTATATTGGG+AGG + tig0028725:41873-41892 Msa1439230:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG + tig0028725:41878-41897 Msa1439230:CDS 40.0%
AAGAGAGAAGCCAACAAATG+GGG + tig0028725:41930-41949 Msa1439230:CDS 40.0%
GAGTGAAATACCCCATTTGT+TGG - tig0028725:41943-41962 None:intergenic 40.0%
! GTTTTTGCTAGTATACCGGT+AGG + tig0028725:42100-42119 Msa1439230:intron 40.0%
GTCAATTTAAACAGGCCTAC+CGG - tig0028725:42118-42137 None:intergenic 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0028725:42450-42469 Msa1439230:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0028725:42450-42469 Msa1439230:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - tig0028725:42590-42609 None:intergenic 40.0%
TGAGCATGTATTGTTGTGAC+AGG + tig0028725:42628-42647 Msa1439230:intron 40.0%
! TCAAGATGTGGATTATACCG+TGG + tig0028725:42671-42690 Msa1439230:CDS 40.0%
! TGCATTTTGGGCAATTGAAG+TGG + tig0028725:42701-42720 Msa1439230:CDS 40.0%
TCACAAGTCTCCTTCAATTC+TGG - tig0028725:42777-42796 None:intergenic 40.0%
TGAAGGAGACTTGTGAAAGA+TGG + tig0028725:42781-42800 Msa1439230:CDS 40.0%
GAAGGAGACTTGTGAAAGAT+GGG + tig0028725:42782-42801 Msa1439230:CDS 40.0%
AAGGAGACTTGTGAAAGATG+GGG + tig0028725:42783-42802 Msa1439230:CDS 40.0%
AATTGAGTAAGCTGGATCAG+GGG + tig0028725:43081-43100 Msa1439230:three_prime_UTR 40.0%
GAATGACAGAAACATGGTTG+AGG + tig0028725:41593-41612 Msa1439230:CDS 40.0%
CACGGATGGAGAGAATAAAA+GGG - tig0028725:41654-41673 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG - tig0028725:41655-41674 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG + tig0028725:41655-41674 Msa1439230:CDS 40.0%
!! ACTTACGAGCCATGTTTTGA+AGG - tig0028725:41698-41717 None:intergenic 40.0%
ATCAGCACACTAGCAACAAA+TGG - tig0028725:41822-41841 None:intergenic 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG + tig0028725:41833-41852 Msa1439230:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG + tig0028725:41857-41876 Msa1439230:CDS 40.0%
GATGTGGAAGTTATATTGGG+AGG + tig0028725:41873-41892 Msa1439230:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG + tig0028725:41878-41897 Msa1439230:CDS 40.0%
AAGAGAGAAGCCAACAAATG+GGG + tig0028725:41930-41949 Msa1439230:CDS 40.0%
GAGTGAAATACCCCATTTGT+TGG - tig0028725:41943-41962 None:intergenic 40.0%
! GTTTTTGCTAGTATACCGGT+AGG + tig0028725:42100-42119 Msa1439230:intron 40.0%
GTCAATTTAAACAGGCCTAC+CGG - tig0028725:42118-42137 None:intergenic 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0028725:42450-42469 Msa1439230:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0028725:42450-42469 Msa1439230:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - tig0028725:42590-42609 None:intergenic 40.0%
TGAGCATGTATTGTTGTGAC+AGG + tig0028725:42628-42647 Msa1439230:intron 40.0%
! TCAAGATGTGGATTATACCG+TGG + tig0028725:42671-42690 Msa1439230:CDS 40.0%
! TGCATTTTGGGCAATTGAAG+TGG + tig0028725:42701-42720 Msa1439230:CDS 40.0%
TCACAAGTCTCCTTCAATTC+TGG - tig0028725:42777-42796 None:intergenic 40.0%
TGAAGGAGACTTGTGAAAGA+TGG + tig0028725:42781-42800 Msa1439230:CDS 40.0%
GAAGGAGACTTGTGAAAGAT+GGG + tig0028725:42782-42801 Msa1439230:CDS 40.0%
AAGGAGACTTGTGAAAGATG+GGG + tig0028725:42783-42802 Msa1439230:CDS 40.0%
AATTGAGTAAGCTGGATCAG+GGG + tig0028725:43081-43100 Msa1439230:three_prime_UTR 40.0%
CTAGAAGACACTGTTGTTGG+CGG + tig0028725:41447-41466 Msa1439230:five_prime_UTR 45.0%
!! CTTGTTGTTATCGGTGTGTG+AGG - tig0028725:41501-41520 None:intergenic 45.0%
!! GGAGAGAATAAAAGGGTGTC+TGG - tig0028725:41647-41666 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG - tig0028725:42363-42382 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG - tig0028725:42364-42383 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + tig0028725:42407-42426 Msa1439230:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + tig0028725:42419-42438 Msa1439230:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG - tig0028725:42423-42442 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG - tig0028725:42585-42604 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG - tig0028725:42586-42605 None:intergenic 45.0%
GTATTGTTGTGACAGGTTGC+TGG + tig0028725:42635-42654 Msa1439230:intron 45.0%
CCAAAATGCAGTAAGAGCCA+CGG - tig0028725:42691-42710 None:intergenic 45.0%
! CGTGGCTCTTACTGCATTTT+GGG + tig0028725:42689-42708 Msa1439230:CDS 45.0%
CAAGTCTCCTTCAATTCTGG+TGG - tig0028725:42774-42793 None:intergenic 45.0%
TGTGAAAGATGGGGCAATGA+AGG + tig0028725:42792-42811 Msa1439230:CDS 45.0%
GTGAAAGATGGGGCAATGAA+GGG + tig0028725:42793-42812 Msa1439230:CDS 45.0%
AGTCAATCAACGCTTGCAGA+AGG + tig0028725:42848-42867 Msa1439230:CDS 45.0%
!! CATTTCTGGAATATGAGCCG+TGG + tig0028725:42933-42952 Msa1439230:CDS 45.0%
CTAGAAGACACTGTTGTTGG+CGG + tig0028725:41447-41466 Msa1439230:five_prime_UTR 45.0%
!! CTTGTTGTTATCGGTGTGTG+AGG - tig0028725:41501-41520 None:intergenic 45.0%
!! GGAGAGAATAAAAGGGTGTC+TGG - tig0028725:41647-41666 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG - tig0028725:42363-42382 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG - tig0028725:42364-42383 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + tig0028725:42407-42426 Msa1439230:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + tig0028725:42419-42438 Msa1439230:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG - tig0028725:42423-42442 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG - tig0028725:42585-42604 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG - tig0028725:42586-42605 None:intergenic 45.0%
GTATTGTTGTGACAGGTTGC+TGG + tig0028725:42635-42654 Msa1439230:intron 45.0%
CCAAAATGCAGTAAGAGCCA+CGG - tig0028725:42691-42710 None:intergenic 45.0%
! CGTGGCTCTTACTGCATTTT+GGG + tig0028725:42689-42708 Msa1439230:CDS 45.0%
CAAGTCTCCTTCAATTCTGG+TGG - tig0028725:42774-42793 None:intergenic 45.0%
TGTGAAAGATGGGGCAATGA+AGG + tig0028725:42792-42811 Msa1439230:CDS 45.0%
GTGAAAGATGGGGCAATGAA+GGG + tig0028725:42793-42812 Msa1439230:CDS 45.0%
AGTCAATCAACGCTTGCAGA+AGG + tig0028725:42848-42867 Msa1439230:CDS 45.0%
!! CATTTCTGGAATATGAGCCG+TGG + tig0028725:42933-42952 Msa1439230:CDS 45.0%
GTGATGGTCTGTGTGAGGAA+AGG + tig0028725:41397-41416 Msa1439230:five_prime_UTR 50.0%
! TAAAGCGCTCACATTGCACG+TGG - tig0028725:41427-41446 None:intergenic 50.0%
TTGCTGCGTCGTAGATAGGA+CGG - tig0028725:41624-41643 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG - tig0028725:41672-41691 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG + tig0028725:42418-42437 Msa1439230:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG - tig0028725:42424-42443 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG + tig0028725:42574-42593 Msa1439230:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG + tig0028725:42575-42594 Msa1439230:intron 50.0%
! CCGTGGCTCTTACTGCATTT+TGG + tig0028725:42688-42707 Msa1439230:CDS 50.0%
AGATGGGGCAATGAAGGGTT+TGG + tig0028725:42798-42817 Msa1439230:CDS 50.0%
GTGATGGTCTGTGTGAGGAA+AGG + tig0028725:41397-41416 Msa1439230:five_prime_UTR 50.0%
! TAAAGCGCTCACATTGCACG+TGG - tig0028725:41427-41446 None:intergenic 50.0%
TTGCTGCGTCGTAGATAGGA+CGG - tig0028725:41624-41643 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG - tig0028725:41672-41691 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG + tig0028725:42418-42437 Msa1439230:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG - tig0028725:42424-42443 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG + tig0028725:42574-42593 Msa1439230:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG + tig0028725:42575-42594 Msa1439230:intron 50.0%
! CCGTGGCTCTTACTGCATTT+TGG + tig0028725:42688-42707 Msa1439230:CDS 50.0%
AGATGGGGCAATGAAGGGTT+TGG + tig0028725:42798-42817 Msa1439230:CDS 50.0%
! AAGGGGTGATGGTCTGTGTG+AGG + tig0028725:41392-41411 Msa1439230:five_prime_UTR 55.0%
CTGGTTGCTGCGTCGTAGAT+AGG - tig0028725:41628-41647 None:intergenic 55.0%
!! TTGAACGGTGCCATCACGGA+TGG - tig0028725:41668-41687 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG + tig0028725:41890-41909 Msa1439230:CDS 55.0%
! AAGGGGTGATGGTCTGTGTG+AGG + tig0028725:41392-41411 Msa1439230:five_prime_UTR 55.0%
CTGGTTGCTGCGTCGTAGAT+AGG - tig0028725:41628-41647 None:intergenic 55.0%
!! TTGAACGGTGCCATCACGGA+TGG - tig0028725:41668-41687 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG + tig0028725:41890-41909 Msa1439230:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0028725 gene 41388 43267 41388 ID=Msa1439230;Name=Msa1439230
tig0028725 mRNA 41388 43267 41388 ID=Msa1439230-mRNA-1;Parent=Msa1439230;Name=Msa1439230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=162|1|1|1|1|1|3|302|231
tig0028725 exon 41388 41711 41388 ID=Msa1439230-mRNA-1:exon:11637;Parent=Msa1439230-mRNA-1
tig0028725 exon 41786 42003 41786 ID=Msa1439230-mRNA-1:exon:11638;Parent=Msa1439230-mRNA-1
tig0028725 exon 42650 43267 42650 ID=Msa1439230-mRNA-1:exon:11639;Parent=Msa1439230-mRNA-1
tig0028725 five_prime_UTR 41388 41549 41388 ID=Msa1439230-mRNA-1:five_prime_utr;Parent=Msa1439230-mRNA-1
tig0028725 CDS 41550 41711 41550 ID=Msa1439230-mRNA-1:cds;Parent=Msa1439230-mRNA-1
tig0028725 CDS 41786 42003 41786 ID=Msa1439230-mRNA-1:cds;Parent=Msa1439230-mRNA-1
tig0028725 CDS 42650 42965 42650 ID=Msa1439230-mRNA-1:cds;Parent=Msa1439230-mRNA-1
tig0028725 three_prime_UTR 42966 43267 42966 ID=Msa1439230-mRNA-1:three_prime_utr;Parent=Msa1439230-mRNA-1
Gene Sequence

>Msa1439230

ATGCAGGTAATAGCAAAAGCAAAAGCTGAGGAGAAGAAAATCGGAATGACAGAAACATGGTTGAGGAAACACCGTCCTATCTACGACGCAGCAACCAGACACCCTTTTATTCTCTCCATCCGTGATGGCACCGTTCAATCTCATTCCTTCAAAACATGGCTCGCTCAGGATTACTTGTTTGTTAGAGAGTTTGTTCCATTTGTTGCTAGTGTGCTGATTAAAGCTTGCAAGGAATCAGATGACAGTGATGATGTGGAAGTTATATTGGGAGGTATGGCTTCTCTCAAGGATGAAATATTATGGTTTAAGAGAGAAGCCAACAAATGGGGTATTTCACTCTCAGACGTTGTTCCTCAAAAACCTAACAAAAACTATTGCAGGTTGCTGGAAAGTTTGATGAGTCAAGATGTGGATTATACCGTGGCTCTTACTGCATTTTGGGCAATTGAAGTGGTGTATCAAGAGAGTTTTGCACACTGTATTGAAGAAGGCTCAAAAACACCACCAGAATTGAAGGAGACTTGTGAAAGATGGGGCAATGAAGGGTTTGGTCAGTACTGCCAATCTCTGCAAAAGATAGTCAATCAACGCTTGCAGAAGGCTTCTGATGATGAGCTAAAGAAGGCTGAAGTCATGTTGCTGAGTATTATTGAACATGAAGTTCATTTCTGGAATATGAGCCGTGGAAATGTTTGA

Protein sequence

>Msa1439230

MQVIAKAKAEEKKIGMTETWLRKHRPIYDAATRHPFILSIRDGTVQSHSFKTWLAQDYLFVREFVPFVASVLIKACKESDDSDDVEVILGGMASLKDEILWFKREANKWGISLSDVVPQKPNKNYCRLLESLMSQDVDYTVALTAFWAIEVVYQESFAHCIEEGSKTPPELKETCERWGNEGFGQYCQSLQKIVNQRLQKASDDELKKAEVMLLSIIEHEVHFWNMSRGNV*