AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1419110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419110 MtrunA17_Chr4g0068291 96.537 231 8 0 1 231 1 231 9.07e-170 466
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419110 AT3G16990.1 61.187 219 85 0 12 230 2 220 3.69e-101 293

Find 70 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACATGAAGTTCATTTC+TGG 0.178089 tig0024668:+68628 Msa1419110:CDS
CCGTGGCTCTTACTGCATTT+TGG 0.179313 tig0024668:+68397 Msa1419110:CDS
CTCTCAAGGATGAAATATTA+TGG 0.227534 tig0024668:+67612 Msa1419110:CDS
TCACAAGTCTCCTTCAATTC+TGG 0.242363 tig0024668:-68483 None:intergenic
TCGATAATTCTTGTTGTTAT+CGG 0.275030 tig0024668:-67215 None:intergenic
TCTTGTTCAAAAGAAATCTT+TGG 0.283412 tig0024668:+68675 Msa1419110:three_prime_UTR
TCACGGATGGAGAGAATAAA+AGG 0.291539 tig0024668:-67360 None:intergenic
TGATGATGTGGAAGTTATAT+TGG 0.334678 tig0024668:+67577 Msa1419110:CDS
TAATTAAGCAAGTTAAATAA+AGG 0.410671 tig0024668:+68816 Msa1419110:three_prime_UTR
GTATTGTTGTGACAGGTTGC+TGG 0.411321 tig0024668:+68344 Msa1419110:intron
TTATAGCTTAAAGTAGTGTA+TGG 0.412585 tig0024668:+68754 Msa1419110:three_prime_UTR
TATATAATCGTTCAACTTTG+AGG 0.416279 tig0024668:-67181 None:intergenic
CTGGTTGCTGCGTCGTAGAT+AGG 0.419325 tig0024668:-67333 None:intergenic
TTAATTGAGTAAGCTGGATC+AGG 0.426672 tig0024668:+68788 Msa1419110:three_prime_UTR
GAGTGAAATACCCCATTTGT+TGG 0.441092 tig0024668:-67648 None:intergenic
TTACTAGAAGACACTGTTGT+TGG 0.447139 tig0024668:+67152 Msa1419110:five_prime_UTR
GATGATGTGGAAGTTATATT+GGG 0.449100 tig0024668:+67578 Msa1419110:CDS
GGAGAGAATAAAAGGGTGTC+TGG 0.461311 tig0024668:-67352 None:intergenic
AAAGGTCTACTAATGAAATC+AGG 0.461485 tig0024668:-68939 None:intergenic
TGAAGGAGACTTGTGAAAGA+TGG 0.462274 tig0024668:+68490 Msa1419110:CDS
AGATGGGGCAATGAAGGGTT+TGG 0.462366 tig0024668:+68507 Msa1419110:CDS
TGTGAAAGATGGGGCAATGA+AGG 0.463004 tig0024668:+68501 Msa1419110:CDS
ATCAGCACACTAGCAACAAA+TGG 0.470279 tig0024668:-67527 None:intergenic
GGAAGTTATATTGGGAGGTA+TGG 0.472614 tig0024668:+67586 Msa1419110:CDS
TTAAGAGAGAAGCCAACAAA+TGG 0.473045 tig0024668:+67636 Msa1419110:CDS
TAAGAGAGAAGCCAACAAAT+GGG 0.484598 tig0024668:+67637 Msa1419110:CDS
AAAGCTGAGGAGAAGAAAAT+CGG 0.488939 tig0024668:+67279 Msa1419110:CDS
GAAGGAGACTTGTGAAAGAT+GGG 0.493393 tig0024668:+68491 Msa1419110:CDS
TCTAGATTAATTGAGTAAGC+TGG 0.497732 tig0024668:+68782 Msa1419110:three_prime_UTR
CTAGAAGACACTGTTGTTGG+CGG 0.501982 tig0024668:+67155 Msa1419110:five_prime_UTR
TTTGCACACTGTATTGAAGA+AGG 0.504202 tig0024668:+68447 Msa1419110:CDS
CAAGTCTCCTTCAATTCTGG+TGG 0.526666 tig0024668:-68480 None:intergenic
TTTATTCTCTCCATCCGTGA+TGG 0.534028 tig0024668:+67363 Msa1419110:CDS
TATAGCTTAAAGTAGTGTAT+GGG 0.537297 tig0024668:+68755 Msa1419110:three_prime_UTR
AACAAGATCAAACATTTCCA+CGG 0.540534 tig0024668:-68659 None:intergenic
GGGAGGTATGGCTTCTCTCA+AGG 0.541239 tig0024668:+67598 Msa1419110:CDS
AATATAGCGGTGCAAATGGA+AGG 0.541269 tig0024668:+67081 None:intergenic
GGTGCAAATGGAAGGGGTGA+TGG 0.542858 tig0024668:+67089 None:intergenic
TGTGCTGATTAAAGCTTGCA+AGG 0.548251 tig0024668:+67541 Msa1419110:CDS
GTGAAAGATGGGGCAATGAA+GGG 0.556760 tig0024668:+68502 Msa1419110:CDS
TTCTGATGATGAGCTAAAGA+AGG 0.559001 tig0024668:+68581 Msa1419110:CDS
TAATTGAGTAAGCTGGATCA+GGG 0.561000 tig0024668:+68789 Msa1419110:three_prime_UTR
CAGAAGAAAAGAAAAGATGC+AGG 0.565864 tig0024668:+67242 Msa1419110:exon
TTCTCCTTATTAATAAAACA+TGG 0.568242 tig0024668:-68845 None:intergenic
AATCTCATTCCTTCAAAACA+TGG 0.569007 tig0024668:+67394 Msa1419110:CDS
TTGAACGGTGCCATCACGGA+TGG 0.569290 tig0024668:-67373 None:intergenic
CACGGATGGAGAGAATAAAA+GGG 0.580740 tig0024668:-67359 None:intergenic
GAATGACAGAAACATGGTTG+AGG 0.586301 tig0024668:+67301 Msa1419110:CDS
GAGATTGAACGGTGCCATCA+CGG 0.590693 tig0024668:-67377 None:intergenic
TATAGCGGTGCAAATGGAAG+GGG 0.597833 tig0024668:+67083 None:intergenic
AGTCAATCAACGCTTGCAGA+AGG 0.599951 tig0024668:+68557 Msa1419110:CDS
ATCAGATGACAGTGATGATG+TGG 0.605897 tig0024668:+67565 Msa1419110:CDS
ATATAGCGGTGCAAATGGAA+GGG 0.606921 tig0024668:+67082 None:intergenic
AAGTTTGATGAGTCAAGATG+TGG 0.608940 tig0024668:+68368 Msa1419110:CDS
GTGATGGTCTGTGTGAGGAA+AGG 0.610084 tig0024668:+67105 Msa1419110:five_prime_UTR
CTTGTTGTTATCGGTGTGTG+AGG 0.612436 tig0024668:-67206 None:intergenic
ATAATCGTTCAACTTTGAGG+TGG 0.617175 tig0024668:-67178 None:intergenic
AATAGCAAAAGCAAAAGCTG+AGG 0.623925 tig0024668:+67266 Msa1419110:CDS
CCAAAATGCAGTAAGAGCCA+CGG 0.640646 tig0024668:-68397 None:intergenic
CATTTCTGGAATATGAGCCG+TGG 0.649732 tig0024668:+68642 Msa1419110:CDS
TTGCTGCGTCGTAGATAGGA+CGG 0.651431 tig0024668:-67329 None:intergenic
AAGAGAGAAGCCAACAAATG+GGG 0.651734 tig0024668:+67638 Msa1419110:CDS
TTTGAAGGAATGAGATTGAA+CGG 0.653325 tig0024668:-67388 None:intergenic
AAATCGGAATGACAGAAACA+TGG 0.662897 tig0024668:+67295 Msa1419110:CDS
AAGGGGTGATGGTCTGTGTG+AGG 0.663954 tig0024668:+67100 Msa1419110:five_prime_UTR
AAGGAGACTTGTGAAAGATG+GGG 0.673941 tig0024668:+68492 Msa1419110:CDS
AATTGAGTAAGCTGGATCAG+GGG 0.682746 tig0024668:+68790 Msa1419110:three_prime_UTR
TCAAGATGTGGATTATACCG+TGG 0.702449 tig0024668:+68380 Msa1419110:CDS
TAAAGCGCTCACATTGCACG+TGG 0.725292 tig0024668:-67132 None:intergenic
GATGTGGAAGTTATATTGGG+AGG 0.743012 tig0024668:+67581 Msa1419110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAGCAAGTTAAATAA+AGG + tig0024668:68816-68835 Msa1419110:three_prime_UTR 15.0%
!! TAATTAAGCAAGTTAAATAA+AGG + tig0024668:68816-68835 Msa1419110:three_prime_UTR 15.0%
!!! TCAATTTATTTCAATTTTGC+AGG + tig0024668:67472-67491 Msa1419110:intron 20.0%
!!! TTCATAATGAGTTCTAATAA+CGG - tig0024668:67752-67771 None:intergenic 20.0%
!! TCAAATAAGTCAATTTAAAC+AGG - tig0024668:67834-67853 None:intergenic 20.0%
!!! AGTTGTTTTTCCATATAAAA+GGG + tig0024668:67899-67918 Msa1419110:intron 20.0%
!! CAATTATATTAATAGAGATG+TGG + tig0024668:67962-67981 Msa1419110:intron 20.0%
!!! TGTACCATGTTTTATTAATA+AGG + tig0024668:68841-68860 Msa1419110:three_prime_UTR 20.0%
!! TTCTCCTTATTAATAAAACA+TGG - tig0024668:68848-68867 None:intergenic 20.0%
!!! TCAATTTATTTCAATTTTGC+AGG + tig0024668:67472-67491 Msa1419110:intron 20.0%
!!! TTCATAATGAGTTCTAATAA+CGG - tig0024668:67752-67771 None:intergenic 20.0%
!! TCAAATAAGTCAATTTAAAC+AGG - tig0024668:67834-67853 None:intergenic 20.0%
!!! AGTTGTTTTTCCATATAAAA+GGG + tig0024668:67899-67918 Msa1419110:intron 20.0%
!! CAATTATATTAATAGAGATG+TGG + tig0024668:67962-67981 Msa1419110:intron 20.0%
!!! TGTACCATGTTTTATTAATA+AGG + tig0024668:68841-68860 Msa1419110:three_prime_UTR 20.0%
!! TTCTCCTTATTAATAAAACA+TGG - tig0024668:68848-68867 None:intergenic 20.0%
! TATATAATCGTTCAACTTTG+AGG - tig0024668:67184-67203 None:intergenic 25.0%
!!! TCGATAATTCTTGTTGTTAT+CGG - tig0024668:67218-67237 None:intergenic 25.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG - tig0024668:67686-67705 None:intergenic 25.0%
! GTTATTAGAACTCATTATGA+AGG + tig0024668:67751-67770 Msa1419110:intron 25.0%
! ACTCATTATGAAGGTTTATT+TGG + tig0024668:67760-67779 Msa1419110:intron 25.0%
! CTCATTATGAAGGTTTATTT+GGG + tig0024668:67761-67780 Msa1419110:intron 25.0%
! TCATTATGAAGGTTTATTTG+GGG + tig0024668:67762-67781 Msa1419110:intron 25.0%
!!! CAGTTGTTTTTCCATATAAA+AGG + tig0024668:67898-67917 Msa1419110:intron 25.0%
! TACATGCTCATAATTATCTA+GGG - tig0024668:68327-68346 None:intergenic 25.0%
! ATACATGCTCATAATTATCT+AGG - tig0024668:68328-68347 None:intergenic 25.0%
! TCTTGTTCAAAAGAAATCTT+TGG + tig0024668:68675-68694 Msa1419110:three_prime_UTR 25.0%
! TTATAGCTTAAAGTAGTGTA+TGG + tig0024668:68754-68773 Msa1419110:three_prime_UTR 25.0%
! TATAGCTTAAAGTAGTGTAT+GGG + tig0024668:68755-68774 Msa1419110:three_prime_UTR 25.0%
! TATATAATCGTTCAACTTTG+AGG - tig0024668:67184-67203 None:intergenic 25.0%
!!! TCGATAATTCTTGTTGTTAT+CGG - tig0024668:67218-67237 None:intergenic 25.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG - tig0024668:67686-67705 None:intergenic 25.0%
! GTTATTAGAACTCATTATGA+AGG + tig0024668:67751-67770 Msa1419110:intron 25.0%
! ACTCATTATGAAGGTTTATT+TGG + tig0024668:67760-67779 Msa1419110:intron 25.0%
! CTCATTATGAAGGTTTATTT+GGG + tig0024668:67761-67780 Msa1419110:intron 25.0%
! TCATTATGAAGGTTTATTTG+GGG + tig0024668:67762-67781 Msa1419110:intron 25.0%
!!! CAGTTGTTTTTCCATATAAA+AGG + tig0024668:67898-67917 Msa1419110:intron 25.0%
! TACATGCTCATAATTATCTA+GGG - tig0024668:68327-68346 None:intergenic 25.0%
! ATACATGCTCATAATTATCT+AGG - tig0024668:68328-68347 None:intergenic 25.0%
! TCTTGTTCAAAAGAAATCTT+TGG + tig0024668:68675-68694 Msa1419110:three_prime_UTR 25.0%
! TTATAGCTTAAAGTAGTGTA+TGG + tig0024668:68754-68773 Msa1419110:three_prime_UTR 25.0%
! TATAGCTTAAAGTAGTGTAT+GGG + tig0024668:68755-68774 Msa1419110:three_prime_UTR 25.0%
TTTGAAGGAATGAGATTGAA+CGG - tig0024668:67391-67410 None:intergenic 30.0%
AATCTCATTCCTTCAAAACA+TGG + tig0024668:67394-67413 Msa1419110:CDS 30.0%
! TGATGATGTGGAAGTTATAT+TGG + tig0024668:67577-67596 Msa1419110:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG + tig0024668:67578-67597 Msa1419110:CDS 30.0%
CTCTCAAGGATGAAATATTA+TGG + tig0024668:67612-67631 Msa1419110:CDS 30.0%
AACCTAACAAAAACTATTGC+AGG + tig0024668:67690-67709 Msa1419110:CDS 30.0%
! TACCTGCAATAGTTTTTGTT+AGG - tig0024668:67695-67714 None:intergenic 30.0%
!!! TCTAGTTTTTGCTAGTATAC+CGG + tig0024668:67804-67823 Msa1419110:intron 30.0%
TTTGACCTTATCTACTGTAT+AGG + tig0024668:67849-67868 Msa1419110:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - tig0024668:68103-68122 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - tig0024668:68104-68123 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + tig0024668:68224-68243 Msa1419110:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + tig0024668:68252-68271 Msa1419110:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + tig0024668:68253-68272 Msa1419110:intron 30.0%
ACATGCTCATAATTATCTAG+GGG - tig0024668:68326-68345 None:intergenic 30.0%
TTGAACATGAAGTTCATTTC+TGG + tig0024668:68628-68647 Msa1419110:CDS 30.0%
AACAAGATCAAACATTTCCA+CGG - tig0024668:68662-68681 None:intergenic 30.0%
TCTAGATTAATTGAGTAAGC+TGG + tig0024668:68782-68801 Msa1419110:three_prime_UTR 30.0%
AAAGGTCTACTAATGAAATC+AGG - tig0024668:68942-68961 None:intergenic 30.0%
TTTGAAGGAATGAGATTGAA+CGG - tig0024668:67391-67410 None:intergenic 30.0%
AATCTCATTCCTTCAAAACA+TGG + tig0024668:67394-67413 Msa1419110:CDS 30.0%
! TGATGATGTGGAAGTTATAT+TGG + tig0024668:67577-67596 Msa1419110:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG + tig0024668:67578-67597 Msa1419110:CDS 30.0%
CTCTCAAGGATGAAATATTA+TGG + tig0024668:67612-67631 Msa1419110:CDS 30.0%
AACCTAACAAAAACTATTGC+AGG + tig0024668:67690-67709 Msa1419110:CDS 30.0%
! TACCTGCAATAGTTTTTGTT+AGG - tig0024668:67695-67714 None:intergenic 30.0%
!!! TCTAGTTTTTGCTAGTATAC+CGG + tig0024668:67804-67823 Msa1419110:intron 30.0%
TTTGACCTTATCTACTGTAT+AGG + tig0024668:67849-67868 Msa1419110:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - tig0024668:68103-68122 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - tig0024668:68104-68123 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + tig0024668:68224-68243 Msa1419110:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + tig0024668:68252-68271 Msa1419110:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + tig0024668:68253-68272 Msa1419110:intron 30.0%
ACATGCTCATAATTATCTAG+GGG - tig0024668:68326-68345 None:intergenic 30.0%
TTGAACATGAAGTTCATTTC+TGG + tig0024668:68628-68647 Msa1419110:CDS 30.0%
AACAAGATCAAACATTTCCA+CGG - tig0024668:68662-68681 None:intergenic 30.0%
TCTAGATTAATTGAGTAAGC+TGG + tig0024668:68782-68801 Msa1419110:three_prime_UTR 30.0%
AAAGGTCTACTAATGAAATC+AGG - tig0024668:68942-68961 None:intergenic 30.0%
TTACTAGAAGACACTGTTGT+TGG + tig0024668:67152-67171 Msa1419110:five_prime_UTR 35.0%
! ATAATCGTTCAACTTTGAGG+TGG - tig0024668:67181-67200 None:intergenic 35.0%
CAGAAGAAAAGAAAAGATGC+AGG + tig0024668:67242-67261 Msa1419110:exon 35.0%
AATAGCAAAAGCAAAAGCTG+AGG + tig0024668:67266-67285 Msa1419110:CDS 35.0%
AAAGCTGAGGAGAAGAAAAT+CGG + tig0024668:67279-67298 Msa1419110:CDS 35.0%
AAATCGGAATGACAGAAACA+TGG + tig0024668:67295-67314 Msa1419110:CDS 35.0%
! TATTTCAATTTTGCAGGCTC+AGG + tig0024668:67478-67497 Msa1419110:intron 35.0%
TTAAGAGAGAAGCCAACAAA+TGG + tig0024668:67636-67655 Msa1419110:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG + tig0024668:67637-67656 Msa1419110:CDS 35.0%
! AATGAGTTCTAATAACGGCA+TGG - tig0024668:67747-67766 None:intergenic 35.0%
GTTCTCCTATACAGTAGATA+AGG - tig0024668:67857-67876 None:intergenic 35.0%
! GTTACACACACCCTTTTATA+TGG - tig0024668:67912-67931 None:intergenic 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG + tig0024668:68056-68075 Msa1419110:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG + tig0024668:68057-68076 Msa1419110:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0024668:68160-68179 Msa1419110:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0024668:68160-68179 Msa1419110:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + tig0024668:68223-68242 Msa1419110:intron 35.0%
AAGTTTGATGAGTCAAGATG+TGG + tig0024668:68368-68387 Msa1419110:CDS 35.0%
TTTGCACACTGTATTGAAGA+AGG + tig0024668:68447-68466 Msa1419110:CDS 35.0%
AAAAACACCACCAGAATTGA+AGG + tig0024668:68473-68492 Msa1419110:CDS 35.0%
! TGACTATCTTTTGCAGAGAT+TGG - tig0024668:68542-68561 None:intergenic 35.0%
! TTCTGATGATGAGCTAAAGA+AGG + tig0024668:68581-68600 Msa1419110:CDS 35.0%
TTAATTGAGTAAGCTGGATC+AGG + tig0024668:68788-68807 Msa1419110:three_prime_UTR 35.0%
TAATTGAGTAAGCTGGATCA+GGG + tig0024668:68789-68808 Msa1419110:three_prime_UTR 35.0%
TTACTAGAAGACACTGTTGT+TGG + tig0024668:67152-67171 Msa1419110:five_prime_UTR 35.0%
! ATAATCGTTCAACTTTGAGG+TGG - tig0024668:67181-67200 None:intergenic 35.0%
CAGAAGAAAAGAAAAGATGC+AGG + tig0024668:67242-67261 Msa1419110:exon 35.0%
AATAGCAAAAGCAAAAGCTG+AGG + tig0024668:67266-67285 Msa1419110:CDS 35.0%
AAAGCTGAGGAGAAGAAAAT+CGG + tig0024668:67279-67298 Msa1419110:CDS 35.0%
AAATCGGAATGACAGAAACA+TGG + tig0024668:67295-67314 Msa1419110:CDS 35.0%
! TATTTCAATTTTGCAGGCTC+AGG + tig0024668:67478-67497 Msa1419110:intron 35.0%
TTAAGAGAGAAGCCAACAAA+TGG + tig0024668:67636-67655 Msa1419110:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG + tig0024668:67637-67656 Msa1419110:CDS 35.0%
! AATGAGTTCTAATAACGGCA+TGG - tig0024668:67747-67766 None:intergenic 35.0%
GTTCTCCTATACAGTAGATA+AGG - tig0024668:67857-67876 None:intergenic 35.0%
! GTTACACACACCCTTTTATA+TGG - tig0024668:67912-67931 None:intergenic 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG + tig0024668:68056-68075 Msa1419110:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG + tig0024668:68057-68076 Msa1419110:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0024668:68160-68179 Msa1419110:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0024668:68160-68179 Msa1419110:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + tig0024668:68223-68242 Msa1419110:intron 35.0%
AAGTTTGATGAGTCAAGATG+TGG + tig0024668:68368-68387 Msa1419110:CDS 35.0%
TTTGCACACTGTATTGAAGA+AGG + tig0024668:68447-68466 Msa1419110:CDS 35.0%
AAAAACACCACCAGAATTGA+AGG + tig0024668:68473-68492 Msa1419110:CDS 35.0%
! TGACTATCTTTTGCAGAGAT+TGG - tig0024668:68542-68561 None:intergenic 35.0%
! TTCTGATGATGAGCTAAAGA+AGG + tig0024668:68581-68600 Msa1419110:CDS 35.0%
TTAATTGAGTAAGCTGGATC+AGG + tig0024668:68788-68807 Msa1419110:three_prime_UTR 35.0%
TAATTGAGTAAGCTGGATCA+GGG + tig0024668:68789-68808 Msa1419110:three_prime_UTR 35.0%
GAATGACAGAAACATGGTTG+AGG + tig0024668:67301-67320 Msa1419110:CDS 40.0%
CACGGATGGAGAGAATAAAA+GGG - tig0024668:67362-67381 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG - tig0024668:67363-67382 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG + tig0024668:67363-67382 Msa1419110:CDS 40.0%
!! ACTTACGAGCCATGTTTTGA+AGG - tig0024668:67406-67425 None:intergenic 40.0%
ATCAGCACACTAGCAACAAA+TGG - tig0024668:67530-67549 None:intergenic 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG + tig0024668:67541-67560 Msa1419110:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG + tig0024668:67565-67584 Msa1419110:CDS 40.0%
GATGTGGAAGTTATATTGGG+AGG + tig0024668:67581-67600 Msa1419110:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG + tig0024668:67586-67605 Msa1419110:CDS 40.0%
AAGAGAGAAGCCAACAAATG+GGG + tig0024668:67638-67657 Msa1419110:CDS 40.0%
GAGTGAAATACCCCATTTGT+TGG - tig0024668:67651-67670 None:intergenic 40.0%
! GTTTTTGCTAGTATACCGGT+AGG + tig0024668:67808-67827 Msa1419110:intron 40.0%
GTCAATTTAAACAGGCCTAC+CGG - tig0024668:67826-67845 None:intergenic 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0024668:68159-68178 Msa1419110:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0024668:68159-68178 Msa1419110:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - tig0024668:68299-68318 None:intergenic 40.0%
TGAGCATGTATTGTTGTGAC+AGG + tig0024668:68337-68356 Msa1419110:intron 40.0%
! TCAAGATGTGGATTATACCG+TGG + tig0024668:68380-68399 Msa1419110:CDS 40.0%
! TGCATTTTGGGCAATTGAAG+TGG + tig0024668:68410-68429 Msa1419110:CDS 40.0%
TCACAAGTCTCCTTCAATTC+TGG - tig0024668:68486-68505 None:intergenic 40.0%
TGAAGGAGACTTGTGAAAGA+TGG + tig0024668:68490-68509 Msa1419110:CDS 40.0%
GAAGGAGACTTGTGAAAGAT+GGG + tig0024668:68491-68510 Msa1419110:CDS 40.0%
AAGGAGACTTGTGAAAGATG+GGG + tig0024668:68492-68511 Msa1419110:CDS 40.0%
AATTGAGTAAGCTGGATCAG+GGG + tig0024668:68790-68809 Msa1419110:three_prime_UTR 40.0%
GAATGACAGAAACATGGTTG+AGG + tig0024668:67301-67320 Msa1419110:CDS 40.0%
CACGGATGGAGAGAATAAAA+GGG - tig0024668:67362-67381 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG - tig0024668:67363-67382 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG + tig0024668:67363-67382 Msa1419110:CDS 40.0%
!! ACTTACGAGCCATGTTTTGA+AGG - tig0024668:67406-67425 None:intergenic 40.0%
ATCAGCACACTAGCAACAAA+TGG - tig0024668:67530-67549 None:intergenic 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG + tig0024668:67541-67560 Msa1419110:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG + tig0024668:67565-67584 Msa1419110:CDS 40.0%
GATGTGGAAGTTATATTGGG+AGG + tig0024668:67581-67600 Msa1419110:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG + tig0024668:67586-67605 Msa1419110:CDS 40.0%
AAGAGAGAAGCCAACAAATG+GGG + tig0024668:67638-67657 Msa1419110:CDS 40.0%
GAGTGAAATACCCCATTTGT+TGG - tig0024668:67651-67670 None:intergenic 40.0%
! GTTTTTGCTAGTATACCGGT+AGG + tig0024668:67808-67827 Msa1419110:intron 40.0%
GTCAATTTAAACAGGCCTAC+CGG - tig0024668:67826-67845 None:intergenic 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0024668:68159-68178 Msa1419110:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0024668:68159-68178 Msa1419110:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - tig0024668:68299-68318 None:intergenic 40.0%
TGAGCATGTATTGTTGTGAC+AGG + tig0024668:68337-68356 Msa1419110:intron 40.0%
! TCAAGATGTGGATTATACCG+TGG + tig0024668:68380-68399 Msa1419110:CDS 40.0%
! TGCATTTTGGGCAATTGAAG+TGG + tig0024668:68410-68429 Msa1419110:CDS 40.0%
TCACAAGTCTCCTTCAATTC+TGG - tig0024668:68486-68505 None:intergenic 40.0%
TGAAGGAGACTTGTGAAAGA+TGG + tig0024668:68490-68509 Msa1419110:CDS 40.0%
GAAGGAGACTTGTGAAAGAT+GGG + tig0024668:68491-68510 Msa1419110:CDS 40.0%
AAGGAGACTTGTGAAAGATG+GGG + tig0024668:68492-68511 Msa1419110:CDS 40.0%
AATTGAGTAAGCTGGATCAG+GGG + tig0024668:68790-68809 Msa1419110:three_prime_UTR 40.0%
CTAGAAGACACTGTTGTTGG+CGG + tig0024668:67155-67174 Msa1419110:five_prime_UTR 45.0%
!! CTTGTTGTTATCGGTGTGTG+AGG - tig0024668:67209-67228 None:intergenic 45.0%
!! GGAGAGAATAAAAGGGTGTC+TGG - tig0024668:67355-67374 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG - tig0024668:68072-68091 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG - tig0024668:68073-68092 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + tig0024668:68116-68135 Msa1419110:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + tig0024668:68128-68147 Msa1419110:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG - tig0024668:68132-68151 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG - tig0024668:68294-68313 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG - tig0024668:68295-68314 None:intergenic 45.0%
GTATTGTTGTGACAGGTTGC+TGG + tig0024668:68344-68363 Msa1419110:intron 45.0%
CCAAAATGCAGTAAGAGCCA+CGG - tig0024668:68400-68419 None:intergenic 45.0%
! CGTGGCTCTTACTGCATTTT+GGG + tig0024668:68398-68417 Msa1419110:CDS 45.0%
CAAGTCTCCTTCAATTCTGG+TGG - tig0024668:68483-68502 None:intergenic 45.0%
TGTGAAAGATGGGGCAATGA+AGG + tig0024668:68501-68520 Msa1419110:CDS 45.0%
GTGAAAGATGGGGCAATGAA+GGG + tig0024668:68502-68521 Msa1419110:CDS 45.0%
AGTCAATCAACGCTTGCAGA+AGG + tig0024668:68557-68576 Msa1419110:CDS 45.0%
!! CATTTCTGGAATATGAGCCG+TGG + tig0024668:68642-68661 Msa1419110:CDS 45.0%
CTAGAAGACACTGTTGTTGG+CGG + tig0024668:67155-67174 Msa1419110:five_prime_UTR 45.0%
!! CTTGTTGTTATCGGTGTGTG+AGG - tig0024668:67209-67228 None:intergenic 45.0%
!! GGAGAGAATAAAAGGGTGTC+TGG - tig0024668:67355-67374 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG - tig0024668:68072-68091 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG - tig0024668:68073-68092 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + tig0024668:68116-68135 Msa1419110:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + tig0024668:68128-68147 Msa1419110:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG - tig0024668:68132-68151 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG - tig0024668:68294-68313 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG - tig0024668:68295-68314 None:intergenic 45.0%
GTATTGTTGTGACAGGTTGC+TGG + tig0024668:68344-68363 Msa1419110:intron 45.0%
CCAAAATGCAGTAAGAGCCA+CGG - tig0024668:68400-68419 None:intergenic 45.0%
! CGTGGCTCTTACTGCATTTT+GGG + tig0024668:68398-68417 Msa1419110:CDS 45.0%
CAAGTCTCCTTCAATTCTGG+TGG - tig0024668:68483-68502 None:intergenic 45.0%
TGTGAAAGATGGGGCAATGA+AGG + tig0024668:68501-68520 Msa1419110:CDS 45.0%
GTGAAAGATGGGGCAATGAA+GGG + tig0024668:68502-68521 Msa1419110:CDS 45.0%
AGTCAATCAACGCTTGCAGA+AGG + tig0024668:68557-68576 Msa1419110:CDS 45.0%
!! CATTTCTGGAATATGAGCCG+TGG + tig0024668:68642-68661 Msa1419110:CDS 45.0%
GTGATGGTCTGTGTGAGGAA+AGG + tig0024668:67105-67124 Msa1419110:five_prime_UTR 50.0%
! TAAAGCGCTCACATTGCACG+TGG - tig0024668:67135-67154 None:intergenic 50.0%
TTGCTGCGTCGTAGATAGGA+CGG - tig0024668:67332-67351 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG - tig0024668:67380-67399 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG + tig0024668:68127-68146 Msa1419110:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG - tig0024668:68133-68152 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG + tig0024668:68283-68302 Msa1419110:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG + tig0024668:68284-68303 Msa1419110:intron 50.0%
! CCGTGGCTCTTACTGCATTT+TGG + tig0024668:68397-68416 Msa1419110:CDS 50.0%
AGATGGGGCAATGAAGGGTT+TGG + tig0024668:68507-68526 Msa1419110:CDS 50.0%
GTGATGGTCTGTGTGAGGAA+AGG + tig0024668:67105-67124 Msa1419110:five_prime_UTR 50.0%
! TAAAGCGCTCACATTGCACG+TGG - tig0024668:67135-67154 None:intergenic 50.0%
TTGCTGCGTCGTAGATAGGA+CGG - tig0024668:67332-67351 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG - tig0024668:67380-67399 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG + tig0024668:68127-68146 Msa1419110:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG - tig0024668:68133-68152 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG + tig0024668:68283-68302 Msa1419110:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG + tig0024668:68284-68303 Msa1419110:intron 50.0%
! CCGTGGCTCTTACTGCATTT+TGG + tig0024668:68397-68416 Msa1419110:CDS 50.0%
AGATGGGGCAATGAAGGGTT+TGG + tig0024668:68507-68526 Msa1419110:CDS 50.0%
! AAGGGGTGATGGTCTGTGTG+AGG + tig0024668:67100-67119 Msa1419110:five_prime_UTR 55.0%
CTGGTTGCTGCGTCGTAGAT+AGG - tig0024668:67336-67355 None:intergenic 55.0%
!! TTGAACGGTGCCATCACGGA+TGG - tig0024668:67376-67395 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG + tig0024668:67598-67617 Msa1419110:CDS 55.0%
! AAGGGGTGATGGTCTGTGTG+AGG + tig0024668:67100-67119 Msa1419110:five_prime_UTR 55.0%
CTGGTTGCTGCGTCGTAGAT+AGG - tig0024668:67336-67355 None:intergenic 55.0%
!! TTGAACGGTGCCATCACGGA+TGG - tig0024668:67376-67395 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG + tig0024668:67598-67617 Msa1419110:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0024668 gene 67096 68976 67096 ID=Msa1419110;Name=Msa1419110
tig0024668 mRNA 67096 68976 67096 ID=Msa1419110-mRNA-1;Parent=Msa1419110;Name=Msa1419110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=162|1|1|1|1|1|3|302|231
tig0024668 exon 67096 67419 67096 ID=Msa1419110-mRNA-1:exon:716;Parent=Msa1419110-mRNA-1
tig0024668 exon 67494 67711 67494 ID=Msa1419110-mRNA-1:exon:717;Parent=Msa1419110-mRNA-1
tig0024668 exon 68359 68976 68359 ID=Msa1419110-mRNA-1:exon:718;Parent=Msa1419110-mRNA-1
tig0024668 five_prime_UTR 67096 67257 67096 ID=Msa1419110-mRNA-1:five_prime_utr;Parent=Msa1419110-mRNA-1
tig0024668 CDS 67258 67419 67258 ID=Msa1419110-mRNA-1:cds;Parent=Msa1419110-mRNA-1
tig0024668 CDS 67494 67711 67494 ID=Msa1419110-mRNA-1:cds;Parent=Msa1419110-mRNA-1
tig0024668 CDS 68359 68674 68359 ID=Msa1419110-mRNA-1:cds;Parent=Msa1419110-mRNA-1
tig0024668 three_prime_UTR 68675 68976 68675 ID=Msa1419110-mRNA-1:three_prime_utr;Parent=Msa1419110-mRNA-1
Gene Sequence

>Msa1419110

ATGCAGGTAATAGCAAAAGCAAAAGCTGAGGAGAAGAAAATCGGAATGACAGAAACATGGTTGAGGAAACACCGTCCTATCTACGACGCAGCAACCAGACACCCTTTTATTCTCTCCATCCGTGATGGCACCGTTCAATCTCATTCCTTCAAAACATGGCTCGCTCAGGATTACTTGTTTGTTAGAGAGTTTGTTCCATTTGTTGCTAGTGTGCTGATTAAAGCTTGCAAGGAATCAGATGACAGTGATGATGTGGAAGTTATATTGGGAGGTATGGCTTCTCTCAAGGATGAAATATTATGGTTTAAGAGAGAAGCCAACAAATGGGGTATTTCACTCTCAGACGTTGTTCCTCAAAAACCTAACAAAAACTATTGCAGGTTGCTGGAAAGTTTGATGAGTCAAGATGTGGATTATACCGTGGCTCTTACTGCATTTTGGGCAATTGAAGTGGTGTATCAAGAGAGTTTTGCACACTGTATTGAAGAAGGCTCAAAAACACCACCAGAATTGAAGGAGACTTGTGAAAGATGGGGCAATGAAGGGTTTGGTCAGTACTGCCAATCTCTGCAAAAGATAGTCAATCAACGCTTGCAGAAGGCTTCTGATGATGAGCTAAAGAAGGCTGAAGTCATGTTGCTGAGTATTATTGAACATGAAGTTCATTTCTGGAATATGAGCCGTGGAAATGTTTGA

Protein sequence

>Msa1419110

MQVIAKAKAEEKKIGMTETWLRKHRPIYDAATRHPFILSIRDGTVQSHSFKTWLAQDYLFVREFVPFVASVLIKACKESDDSDDVEVILGGMASLKDEILWFKREANKWGISLSDVVPQKPNKNYCRLLESLMSQDVDYTVALTAFWAIEVVYQESFAHCIEEGSKTPPELKETCERWGNEGFGQYCQSLQKIVNQRLQKASDDELKKAEVMLLSIIEHEVHFWNMSRGNV*