AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622340 MtrunA17_Chr4g0068291 96.537 231 8 0 1 231 1 231 9.07e-170 466
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622340 AT3G16990.1 61.187 219 85 0 12 230 2 220 3.69e-101 293

Find 69 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACATGAAGTTCATTTC+TGG 0.178089 4_2:-74767167 Msa0622340:CDS
CCGTGGCTCTTACTGCATTT+TGG 0.179313 4_2:-74767398 Msa0622340:CDS
CTCTCAAGGATGAAATATTA+TGG 0.227534 4_2:-74768183 Msa0622340:CDS
TCACAAGTCTCCTTCAATTC+TGG 0.242363 4_2:+74767312 None:intergenic
TCGCTAATTCTTGTTGTTAT+CGG 0.253280 4_2:+74768582 None:intergenic
TCTTGTTCAAAAGAAATCTT+TGG 0.283412 4_2:-74767120 Msa0622340:three_prime_UTR
TCACGGATGGAGAGAATAAA+AGG 0.291539 4_2:+74768435 None:intergenic
TGATGATGTGGAAGTTATAT+TGG 0.334678 4_2:-74768218 Msa0622340:CDS
TAATTAAGCAAGTTAAATAA+AGG 0.410671 4_2:-74766979 Msa0622340:three_prime_UTR
GTATTGTTGTGACAGGTTGC+TGG 0.411321 4_2:-74767451 Msa0622340:intron
TTATAGCTTAAAGTAGTGTA+TGG 0.412585 4_2:-74767041 Msa0622340:three_prime_UTR
CTGGTTGCTGCGTCGTAGAT+AGG 0.419325 4_2:+74768462 None:intergenic
TTACTAGAAGACACTGTTGT+TGG 0.423066 4_2:-74768644 Msa0622340:five_prime_UTR
TTAATTGAGTAAGCTGGATC+AGG 0.426672 4_2:-74767007 Msa0622340:three_prime_UTR
TATATAATCGTTCAACTTTG+AGG 0.436578 4_2:+74768615 None:intergenic
GAGTGAAATACCCCATTTGT+TGG 0.441092 4_2:+74768147 None:intergenic
GATGATGTGGAAGTTATATT+GGG 0.449100 4_2:-74768217 Msa0622340:CDS
GGAGAGAATAAAAGGGTGTC+TGG 0.461311 4_2:+74768443 None:intergenic
AAAGGTCTACTAATGAAATC+AGG 0.461485 4_2:+74766856 None:intergenic
TGAAGGAGACTTGTGAAAGA+TGG 0.462274 4_2:-74767305 Msa0622340:CDS
AGATGGGGCAATGAAGGGTT+TGG 0.462366 4_2:-74767288 Msa0622340:CDS
TGTGAAAGATGGGGCAATGA+AGG 0.463004 4_2:-74767294 Msa0622340:CDS
ATCAGCACACTAGCAACAAA+TGG 0.470279 4_2:+74768268 None:intergenic
GGAAGTTATATTGGGAGGTA+TGG 0.472614 4_2:-74768209 Msa0622340:CDS
TTAAGAGAGAAGCCAACAAA+TGG 0.473045 4_2:-74768159 Msa0622340:CDS
TAAGAGAGAAGCCAACAAAT+GGG 0.484598 4_2:-74768158 Msa0622340:CDS
GCAAATAATGGAAGGGGTGA+TGG 0.486063 4_2:-74768710 None:intergenic
AAAGCTGAGGAGAAGAAAAT+CGG 0.488939 4_2:-74768516 Msa0622340:CDS
GAAGGAGACTTGTGAAAGAT+GGG 0.493393 4_2:-74767304 Msa0622340:CDS
TCTAGATTAATTGAGTAAGC+TGG 0.497732 4_2:-74767013 Msa0622340:three_prime_UTR
CTAGAAGACACTGTTGTTGG+CGG 0.501982 4_2:-74768641 Msa0622340:five_prime_UTR
TTTGCACACTGTATTGAAGA+AGG 0.504202 4_2:-74767348 Msa0622340:CDS
CAAGTCTCCTTCAATTCTGG+TGG 0.526666 4_2:+74767315 None:intergenic
TTTATTCTCTCCATCCGTGA+TGG 0.534028 4_2:-74768432 Msa0622340:CDS
TATAGCTTAAAGTAGTGTAT+GGG 0.537297 4_2:-74767040 Msa0622340:three_prime_UTR
AACAAGATCAAACATTTCCA+CGG 0.540534 4_2:+74767136 None:intergenic
GGGAGGTATGGCTTCTCTCA+AGG 0.541239 4_2:-74768197 Msa0622340:CDS
TGTGCTGATTAAAGCTTGCA+AGG 0.548251 4_2:-74768254 Msa0622340:CDS
GTGAAAGATGGGGCAATGAA+GGG 0.556760 4_2:-74767293 Msa0622340:CDS
TTCTGATGATGAGCTAAAGA+AGG 0.559001 4_2:-74767214 Msa0622340:CDS
TAATTGAGTAAGCTGGATCA+GGG 0.561000 4_2:-74767006 Msa0622340:three_prime_UTR
CAGAAGAAAAGAAAAGATGC+AGG 0.565864 4_2:-74768553 Msa0622340:exon
TTCTCCTTATTAATAAAACA+TGG 0.568242 4_2:+74766950 None:intergenic
AATCTCATTCCTTCAAAACA+TGG 0.569007 4_2:-74768401 Msa0622340:CDS
TTGAACGGTGCCATCACGGA+TGG 0.569290 4_2:+74768422 None:intergenic
CACGGATGGAGAGAATAAAA+GGG 0.580740 4_2:+74768436 None:intergenic
GAATGACAGAAACATGGTTG+AGG 0.586301 4_2:-74768494 Msa0622340:CDS
AGCGGTGCAAATAATGGAAG+GGG 0.589999 4_2:-74768716 None:intergenic
GAGATTGAACGGTGCCATCA+CGG 0.590693 4_2:+74768418 None:intergenic
AGTCAATCAACGCTTGCAGA+AGG 0.599951 4_2:-74767238 Msa0622340:CDS
ATCAGATGACAGTGATGATG+TGG 0.605897 4_2:-74768230 Msa0622340:CDS
AAGTTTGATGAGTCAAGATG+TGG 0.608940 4_2:-74767427 Msa0622340:CDS
ATAGCGGTGCAAATAATGGA+AGG 0.615456 4_2:-74768718 None:intergenic
ATAATCGTTCAACTTTGAGG+TGG 0.617175 4_2:+74768618 None:intergenic
AATAGCAAAAGCAAAAGCTG+AGG 0.623925 4_2:-74768529 Msa0622340:CDS
ATGGTCTGCTGTGTGAGGAA+AGG 0.634515 4_2:-74768691 Msa0622340:five_prime_UTR
TAGCGGTGCAAATAATGGAA+GGG 0.635613 4_2:-74768717 None:intergenic
CCAAAATGCAGTAAGAGCCA+CGG 0.640646 4_2:+74767398 None:intergenic
CATTTCTGGAATATGAGCCG+TGG 0.649732 4_2:-74767153 Msa0622340:CDS
TTGCTGCGTCGTAGATAGGA+CGG 0.651431 4_2:+74768466 None:intergenic
AAGAGAGAAGCCAACAAATG+GGG 0.651734 4_2:-74768157 Msa0622340:CDS
TTTGAAGGAATGAGATTGAA+CGG 0.653325 4_2:+74768407 None:intergenic
AAATCGGAATGACAGAAACA+TGG 0.662897 4_2:-74768500 Msa0622340:CDS
AAGGAGACTTGTGAAAGATG+GGG 0.673941 4_2:-74767303 Msa0622340:CDS
AATTGAGTAAGCTGGATCAG+GGG 0.682746 4_2:-74767005 Msa0622340:three_prime_UTR
GGGTGATGGTCTGCTGTGTG+AGG 0.685401 4_2:-74768696 Msa0622340:five_prime_UTR
TCAAGATGTGGATTATACCG+TGG 0.702449 4_2:-74767415 Msa0622340:CDS
TAAAGTGCTCACATTGCACG+TGG 0.710156 4_2:+74768664 None:intergenic
GATGTGGAAGTTATATTGGG+AGG 0.743012 4_2:-74768214 Msa0622340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAGCAAGTTAAATAA+AGG - chr4_2:74768565-74768584 Msa0622340:five_prime_UTR 15.0%
!! TAATTAAGCAAGTTAAATAA+AGG - chr4_2:74768565-74768584 Msa0622340:five_prime_UTR 15.0%
!!! TCAATTTATTTCAATTTTGC+AGG - chr4_2:74767221-74767240 Msa0622340:CDS 20.0%
!!! TTCATAATGAGTTCTAATAA+CGG + chr4_2:74767501-74767520 None:intergenic 20.0%
!! TCAAATAAGTCAATTTAAAC+AGG + chr4_2:74767583-74767602 None:intergenic 20.0%
!!! AGTTGTTTTTCCATATAAAA+GGG - chr4_2:74767648-74767667 Msa0622340:intron 20.0%
!! CAATTATATTAATAGAGATG+TGG - chr4_2:74767711-74767730 Msa0622340:intron 20.0%
!!! TGTACCATGTTTTATTAATA+AGG - chr4_2:74768590-74768609 Msa0622340:five_prime_UTR 20.0%
!! TTCTCCTTATTAATAAAACA+TGG + chr4_2:74768597-74768616 None:intergenic 20.0%
!!! TCAATTTATTTCAATTTTGC+AGG - chr4_2:74767221-74767240 Msa0622340:CDS 20.0%
!!! TTCATAATGAGTTCTAATAA+CGG + chr4_2:74767501-74767520 None:intergenic 20.0%
!! TCAAATAAGTCAATTTAAAC+AGG + chr4_2:74767583-74767602 None:intergenic 20.0%
!!! AGTTGTTTTTCCATATAAAA+GGG - chr4_2:74767648-74767667 Msa0622340:intron 20.0%
!! CAATTATATTAATAGAGATG+TGG - chr4_2:74767711-74767730 Msa0622340:intron 20.0%
!!! TGTACCATGTTTTATTAATA+AGG - chr4_2:74768590-74768609 Msa0622340:five_prime_UTR 20.0%
!! TTCTCCTTATTAATAAAACA+TGG + chr4_2:74768597-74768616 None:intergenic 20.0%
! TATATAATCGTTCAACTTTG+AGG + chr4_2:74766932-74766951 None:intergenic 25.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG + chr4_2:74767435-74767454 None:intergenic 25.0%
! GTTATTAGAACTCATTATGA+AGG - chr4_2:74767500-74767519 Msa0622340:intron 25.0%
! ACTCATTATGAAGGTTTATT+TGG - chr4_2:74767509-74767528 Msa0622340:intron 25.0%
! CTCATTATGAAGGTTTATTT+GGG - chr4_2:74767510-74767529 Msa0622340:intron 25.0%
! TCATTATGAAGGTTTATTTG+GGG - chr4_2:74767511-74767530 Msa0622340:intron 25.0%
!!! CAGTTGTTTTTCCATATAAA+AGG - chr4_2:74767647-74767666 Msa0622340:intron 25.0%
! TACATGCTCATAATTATCTA+GGG + chr4_2:74768076-74768095 None:intergenic 25.0%
! ATACATGCTCATAATTATCT+AGG + chr4_2:74768077-74768096 None:intergenic 25.0%
! TCTTGTTCAAAAGAAATCTT+TGG - chr4_2:74768424-74768443 Msa0622340:CDS 25.0%
! TTATAGCTTAAAGTAGTGTA+TGG - chr4_2:74768503-74768522 Msa0622340:CDS 25.0%
! TATAGCTTAAAGTAGTGTAT+GGG - chr4_2:74768504-74768523 Msa0622340:CDS 25.0%
! TATATAATCGTTCAACTTTG+AGG + chr4_2:74766932-74766951 None:intergenic 25.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG + chr4_2:74767435-74767454 None:intergenic 25.0%
! GTTATTAGAACTCATTATGA+AGG - chr4_2:74767500-74767519 Msa0622340:intron 25.0%
! ACTCATTATGAAGGTTTATT+TGG - chr4_2:74767509-74767528 Msa0622340:intron 25.0%
! CTCATTATGAAGGTTTATTT+GGG - chr4_2:74767510-74767529 Msa0622340:intron 25.0%
! TCATTATGAAGGTTTATTTG+GGG - chr4_2:74767511-74767530 Msa0622340:intron 25.0%
!!! CAGTTGTTTTTCCATATAAA+AGG - chr4_2:74767647-74767666 Msa0622340:intron 25.0%
! TACATGCTCATAATTATCTA+GGG + chr4_2:74768076-74768095 None:intergenic 25.0%
! ATACATGCTCATAATTATCT+AGG + chr4_2:74768077-74768096 None:intergenic 25.0%
! TCTTGTTCAAAAGAAATCTT+TGG - chr4_2:74768424-74768443 Msa0622340:CDS 25.0%
! TTATAGCTTAAAGTAGTGTA+TGG - chr4_2:74768503-74768522 Msa0622340:CDS 25.0%
! TATAGCTTAAAGTAGTGTAT+GGG - chr4_2:74768504-74768523 Msa0622340:CDS 25.0%
!! TCGCTAATTCTTGTTGTTAT+CGG + chr4_2:74766965-74766984 None:intergenic 30.0%
TTTGAAGGAATGAGATTGAA+CGG + chr4_2:74767140-74767159 None:intergenic 30.0%
AATCTCATTCCTTCAAAACA+TGG - chr4_2:74767143-74767162 Msa0622340:CDS 30.0%
! TGATGATGTGGAAGTTATAT+TGG - chr4_2:74767326-74767345 Msa0622340:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG - chr4_2:74767327-74767346 Msa0622340:CDS 30.0%
CTCTCAAGGATGAAATATTA+TGG - chr4_2:74767361-74767380 Msa0622340:CDS 30.0%
AACCTAACAAAAACTATTGC+AGG - chr4_2:74767439-74767458 Msa0622340:CDS 30.0%
! TACCTGCAATAGTTTTTGTT+AGG + chr4_2:74767444-74767463 None:intergenic 30.0%
!!! TCTAGTTTTTGCTAGTATAC+CGG - chr4_2:74767553-74767572 Msa0622340:intron 30.0%
TTTGACCTTATCTACTGTAT+AGG - chr4_2:74767598-74767617 Msa0622340:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG + chr4_2:74767852-74767871 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG + chr4_2:74767853-74767872 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr4_2:74767973-74767992 Msa0622340:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr4_2:74768001-74768020 Msa0622340:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr4_2:74768002-74768021 Msa0622340:intron 30.0%
ACATGCTCATAATTATCTAG+GGG + chr4_2:74768075-74768094 None:intergenic 30.0%
TTGAACATGAAGTTCATTTC+TGG - chr4_2:74768377-74768396 Msa0622340:intron 30.0%
AACAAGATCAAACATTTCCA+CGG + chr4_2:74768411-74768430 None:intergenic 30.0%
TCTAGATTAATTGAGTAAGC+TGG - chr4_2:74768531-74768550 Msa0622340:CDS 30.0%
AAAGGTCTACTAATGAAATC+AGG + chr4_2:74768691-74768710 None:intergenic 30.0%
!! TCGCTAATTCTTGTTGTTAT+CGG + chr4_2:74766965-74766984 None:intergenic 30.0%
TTTGAAGGAATGAGATTGAA+CGG + chr4_2:74767140-74767159 None:intergenic 30.0%
AATCTCATTCCTTCAAAACA+TGG - chr4_2:74767143-74767162 Msa0622340:CDS 30.0%
! TGATGATGTGGAAGTTATAT+TGG - chr4_2:74767326-74767345 Msa0622340:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG - chr4_2:74767327-74767346 Msa0622340:CDS 30.0%
CTCTCAAGGATGAAATATTA+TGG - chr4_2:74767361-74767380 Msa0622340:CDS 30.0%
AACCTAACAAAAACTATTGC+AGG - chr4_2:74767439-74767458 Msa0622340:CDS 30.0%
! TACCTGCAATAGTTTTTGTT+AGG + chr4_2:74767444-74767463 None:intergenic 30.0%
!!! TCTAGTTTTTGCTAGTATAC+CGG - chr4_2:74767553-74767572 Msa0622340:intron 30.0%
TTTGACCTTATCTACTGTAT+AGG - chr4_2:74767598-74767617 Msa0622340:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG + chr4_2:74767852-74767871 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG + chr4_2:74767853-74767872 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr4_2:74767973-74767992 Msa0622340:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr4_2:74768001-74768020 Msa0622340:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr4_2:74768002-74768021 Msa0622340:intron 30.0%
ACATGCTCATAATTATCTAG+GGG + chr4_2:74768075-74768094 None:intergenic 30.0%
TTGAACATGAAGTTCATTTC+TGG - chr4_2:74768377-74768396 Msa0622340:intron 30.0%
AACAAGATCAAACATTTCCA+CGG + chr4_2:74768411-74768430 None:intergenic 30.0%
TCTAGATTAATTGAGTAAGC+TGG - chr4_2:74768531-74768550 Msa0622340:CDS 30.0%
AAAGGTCTACTAATGAAATC+AGG + chr4_2:74768691-74768710 None:intergenic 30.0%
TTACTAGAAGACACTGTTGT+TGG - chr4_2:74766900-74766919 Msa0622340:three_prime_UTR 35.0%
! ATAATCGTTCAACTTTGAGG+TGG + chr4_2:74766929-74766948 None:intergenic 35.0%
CAGAAGAAAAGAAAAGATGC+AGG - chr4_2:74766991-74767010 Msa0622340:three_prime_UTR 35.0%
AATAGCAAAAGCAAAAGCTG+AGG - chr4_2:74767015-74767034 Msa0622340:three_prime_UTR 35.0%
AAAGCTGAGGAGAAGAAAAT+CGG - chr4_2:74767028-74767047 Msa0622340:three_prime_UTR 35.0%
AAATCGGAATGACAGAAACA+TGG - chr4_2:74767044-74767063 Msa0622340:three_prime_UTR 35.0%
! TATTTCAATTTTGCAGGCTC+AGG - chr4_2:74767227-74767246 Msa0622340:CDS 35.0%
TTAAGAGAGAAGCCAACAAA+TGG - chr4_2:74767385-74767404 Msa0622340:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG - chr4_2:74767386-74767405 Msa0622340:CDS 35.0%
! AATGAGTTCTAATAACGGCA+TGG + chr4_2:74767496-74767515 None:intergenic 35.0%
GTTCTCCTATACAGTAGATA+AGG + chr4_2:74767606-74767625 None:intergenic 35.0%
! GTTACACACACCCTTTTATA+TGG + chr4_2:74767661-74767680 None:intergenic 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG - chr4_2:74767805-74767824 Msa0622340:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG - chr4_2:74767806-74767825 Msa0622340:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr4_2:74767909-74767928 Msa0622340:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr4_2:74767909-74767928 Msa0622340:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr4_2:74767972-74767991 Msa0622340:intron 35.0%
AAGTTTGATGAGTCAAGATG+TGG - chr4_2:74768117-74768136 Msa0622340:CDS 35.0%
TTTGCACACTGTATTGAAGA+AGG - chr4_2:74768196-74768215 Msa0622340:CDS 35.0%
AAAAACACCACCAGAATTGA+AGG - chr4_2:74768222-74768241 Msa0622340:CDS 35.0%
! TGACTATCTTTTGCAGAGAT+TGG + chr4_2:74768291-74768310 None:intergenic 35.0%
! TTCTGATGATGAGCTAAAGA+AGG - chr4_2:74768330-74768349 Msa0622340:intron 35.0%
TTAATTGAGTAAGCTGGATC+AGG - chr4_2:74768537-74768556 Msa0622340:CDS 35.0%
TAATTGAGTAAGCTGGATCA+GGG - chr4_2:74768538-74768557 Msa0622340:CDS 35.0%
TTACTAGAAGACACTGTTGT+TGG - chr4_2:74766900-74766919 Msa0622340:three_prime_UTR 35.0%
! ATAATCGTTCAACTTTGAGG+TGG + chr4_2:74766929-74766948 None:intergenic 35.0%
CAGAAGAAAAGAAAAGATGC+AGG - chr4_2:74766991-74767010 Msa0622340:three_prime_UTR 35.0%
AATAGCAAAAGCAAAAGCTG+AGG - chr4_2:74767015-74767034 Msa0622340:three_prime_UTR 35.0%
AAAGCTGAGGAGAAGAAAAT+CGG - chr4_2:74767028-74767047 Msa0622340:three_prime_UTR 35.0%
AAATCGGAATGACAGAAACA+TGG - chr4_2:74767044-74767063 Msa0622340:three_prime_UTR 35.0%
! TATTTCAATTTTGCAGGCTC+AGG - chr4_2:74767227-74767246 Msa0622340:CDS 35.0%
TTAAGAGAGAAGCCAACAAA+TGG - chr4_2:74767385-74767404 Msa0622340:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG - chr4_2:74767386-74767405 Msa0622340:CDS 35.0%
! AATGAGTTCTAATAACGGCA+TGG + chr4_2:74767496-74767515 None:intergenic 35.0%
GTTCTCCTATACAGTAGATA+AGG + chr4_2:74767606-74767625 None:intergenic 35.0%
! GTTACACACACCCTTTTATA+TGG + chr4_2:74767661-74767680 None:intergenic 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG - chr4_2:74767805-74767824 Msa0622340:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG - chr4_2:74767806-74767825 Msa0622340:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr4_2:74767909-74767928 Msa0622340:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr4_2:74767909-74767928 Msa0622340:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr4_2:74767972-74767991 Msa0622340:intron 35.0%
AAGTTTGATGAGTCAAGATG+TGG - chr4_2:74768117-74768136 Msa0622340:CDS 35.0%
TTTGCACACTGTATTGAAGA+AGG - chr4_2:74768196-74768215 Msa0622340:CDS 35.0%
AAAAACACCACCAGAATTGA+AGG - chr4_2:74768222-74768241 Msa0622340:CDS 35.0%
! TGACTATCTTTTGCAGAGAT+TGG + chr4_2:74768291-74768310 None:intergenic 35.0%
! TTCTGATGATGAGCTAAAGA+AGG - chr4_2:74768330-74768349 Msa0622340:intron 35.0%
TTAATTGAGTAAGCTGGATC+AGG - chr4_2:74768537-74768556 Msa0622340:CDS 35.0%
TAATTGAGTAAGCTGGATCA+GGG - chr4_2:74768538-74768557 Msa0622340:CDS 35.0%
GAATGACAGAAACATGGTTG+AGG - chr4_2:74767050-74767069 Msa0622340:three_prime_UTR 40.0%
CACGGATGGAGAGAATAAAA+GGG + chr4_2:74767111-74767130 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG + chr4_2:74767112-74767131 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG - chr4_2:74767112-74767131 Msa0622340:three_prime_UTR 40.0%
!! ACTTACGAGCCATGTTTTGA+AGG + chr4_2:74767155-74767174 None:intergenic 40.0%
ATCAGCACACTAGCAACAAA+TGG + chr4_2:74767279-74767298 None:intergenic 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG - chr4_2:74767290-74767309 Msa0622340:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG - chr4_2:74767314-74767333 Msa0622340:CDS 40.0%
GATGTGGAAGTTATATTGGG+AGG - chr4_2:74767330-74767349 Msa0622340:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG - chr4_2:74767335-74767354 Msa0622340:CDS 40.0%
AAGAGAGAAGCCAACAAATG+GGG - chr4_2:74767387-74767406 Msa0622340:CDS 40.0%
GAGTGAAATACCCCATTTGT+TGG + chr4_2:74767400-74767419 None:intergenic 40.0%
! GTTTTTGCTAGTATACCGGT+AGG - chr4_2:74767557-74767576 Msa0622340:intron 40.0%
GTCAATTTAAACAGGCCTAC+CGG + chr4_2:74767575-74767594 None:intergenic 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr4_2:74767908-74767927 Msa0622340:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr4_2:74767908-74767927 Msa0622340:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr4_2:74768048-74768067 None:intergenic 40.0%
TGAGCATGTATTGTTGTGAC+AGG - chr4_2:74768086-74768105 Msa0622340:intron 40.0%
! TCAAGATGTGGATTATACCG+TGG - chr4_2:74768129-74768148 Msa0622340:CDS 40.0%
! TGCATTTTGGGCAATTGAAG+TGG - chr4_2:74768159-74768178 Msa0622340:CDS 40.0%
TCACAAGTCTCCTTCAATTC+TGG + chr4_2:74768235-74768254 None:intergenic 40.0%
TGAAGGAGACTTGTGAAAGA+TGG - chr4_2:74768239-74768258 Msa0622340:CDS 40.0%
GAAGGAGACTTGTGAAAGAT+GGG - chr4_2:74768240-74768259 Msa0622340:CDS 40.0%
AAGGAGACTTGTGAAAGATG+GGG - chr4_2:74768241-74768260 Msa0622340:CDS 40.0%
AATTGAGTAAGCTGGATCAG+GGG - chr4_2:74768539-74768558 Msa0622340:CDS 40.0%
GAATGACAGAAACATGGTTG+AGG - chr4_2:74767050-74767069 Msa0622340:three_prime_UTR 40.0%
CACGGATGGAGAGAATAAAA+GGG + chr4_2:74767111-74767130 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG + chr4_2:74767112-74767131 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG - chr4_2:74767112-74767131 Msa0622340:three_prime_UTR 40.0%
!! ACTTACGAGCCATGTTTTGA+AGG + chr4_2:74767155-74767174 None:intergenic 40.0%
ATCAGCACACTAGCAACAAA+TGG + chr4_2:74767279-74767298 None:intergenic 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG - chr4_2:74767290-74767309 Msa0622340:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG - chr4_2:74767314-74767333 Msa0622340:CDS 40.0%
GATGTGGAAGTTATATTGGG+AGG - chr4_2:74767330-74767349 Msa0622340:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG - chr4_2:74767335-74767354 Msa0622340:CDS 40.0%
AAGAGAGAAGCCAACAAATG+GGG - chr4_2:74767387-74767406 Msa0622340:CDS 40.0%
GAGTGAAATACCCCATTTGT+TGG + chr4_2:74767400-74767419 None:intergenic 40.0%
! GTTTTTGCTAGTATACCGGT+AGG - chr4_2:74767557-74767576 Msa0622340:intron 40.0%
GTCAATTTAAACAGGCCTAC+CGG + chr4_2:74767575-74767594 None:intergenic 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr4_2:74767908-74767927 Msa0622340:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr4_2:74767908-74767927 Msa0622340:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr4_2:74768048-74768067 None:intergenic 40.0%
TGAGCATGTATTGTTGTGAC+AGG - chr4_2:74768086-74768105 Msa0622340:intron 40.0%
! TCAAGATGTGGATTATACCG+TGG - chr4_2:74768129-74768148 Msa0622340:CDS 40.0%
! TGCATTTTGGGCAATTGAAG+TGG - chr4_2:74768159-74768178 Msa0622340:CDS 40.0%
TCACAAGTCTCCTTCAATTC+TGG + chr4_2:74768235-74768254 None:intergenic 40.0%
TGAAGGAGACTTGTGAAAGA+TGG - chr4_2:74768239-74768258 Msa0622340:CDS 40.0%
GAAGGAGACTTGTGAAAGAT+GGG - chr4_2:74768240-74768259 Msa0622340:CDS 40.0%
AAGGAGACTTGTGAAAGATG+GGG - chr4_2:74768241-74768260 Msa0622340:CDS 40.0%
AATTGAGTAAGCTGGATCAG+GGG - chr4_2:74768539-74768558 Msa0622340:CDS 40.0%
! TAAAGTGCTCACATTGCACG+TGG + chr4_2:74766883-74766902 None:intergenic 45.0%
CTAGAAGACACTGTTGTTGG+CGG - chr4_2:74766903-74766922 Msa0622340:three_prime_UTR 45.0%
!! GGAGAGAATAAAAGGGTGTC+TGG + chr4_2:74767104-74767123 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG + chr4_2:74767821-74767840 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG + chr4_2:74767822-74767841 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG - chr4_2:74767865-74767884 Msa0622340:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr4_2:74767877-74767896 Msa0622340:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr4_2:74767881-74767900 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG + chr4_2:74768043-74768062 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG + chr4_2:74768044-74768063 None:intergenic 45.0%
GTATTGTTGTGACAGGTTGC+TGG - chr4_2:74768093-74768112 Msa0622340:intron 45.0%
CCAAAATGCAGTAAGAGCCA+CGG + chr4_2:74768149-74768168 None:intergenic 45.0%
! CGTGGCTCTTACTGCATTTT+GGG - chr4_2:74768147-74768166 Msa0622340:CDS 45.0%
CAAGTCTCCTTCAATTCTGG+TGG + chr4_2:74768232-74768251 None:intergenic 45.0%
TGTGAAAGATGGGGCAATGA+AGG - chr4_2:74768250-74768269 Msa0622340:CDS 45.0%
GTGAAAGATGGGGCAATGAA+GGG - chr4_2:74768251-74768270 Msa0622340:CDS 45.0%
AGTCAATCAACGCTTGCAGA+AGG - chr4_2:74768306-74768325 Msa0622340:intron 45.0%
!! CATTTCTGGAATATGAGCCG+TGG - chr4_2:74768391-74768410 Msa0622340:intron 45.0%
! TAAAGTGCTCACATTGCACG+TGG + chr4_2:74766883-74766902 None:intergenic 45.0%
CTAGAAGACACTGTTGTTGG+CGG - chr4_2:74766903-74766922 Msa0622340:three_prime_UTR 45.0%
!! GGAGAGAATAAAAGGGTGTC+TGG + chr4_2:74767104-74767123 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG + chr4_2:74767821-74767840 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG + chr4_2:74767822-74767841 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG - chr4_2:74767865-74767884 Msa0622340:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr4_2:74767877-74767896 Msa0622340:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr4_2:74767881-74767900 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG + chr4_2:74768043-74768062 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG + chr4_2:74768044-74768063 None:intergenic 45.0%
GTATTGTTGTGACAGGTTGC+TGG - chr4_2:74768093-74768112 Msa0622340:intron 45.0%
CCAAAATGCAGTAAGAGCCA+CGG + chr4_2:74768149-74768168 None:intergenic 45.0%
! CGTGGCTCTTACTGCATTTT+GGG - chr4_2:74768147-74768166 Msa0622340:CDS 45.0%
CAAGTCTCCTTCAATTCTGG+TGG + chr4_2:74768232-74768251 None:intergenic 45.0%
TGTGAAAGATGGGGCAATGA+AGG - chr4_2:74768250-74768269 Msa0622340:CDS 45.0%
GTGAAAGATGGGGCAATGAA+GGG - chr4_2:74768251-74768270 Msa0622340:CDS 45.0%
AGTCAATCAACGCTTGCAGA+AGG - chr4_2:74768306-74768325 Msa0622340:intron 45.0%
!! CATTTCTGGAATATGAGCCG+TGG - chr4_2:74768391-74768410 Msa0622340:intron 45.0%
ATGGTCTGCTGTGTGAGGAA+AGG - chr4_2:74766853-74766872 Msa0622340:three_prime_UTR 50.0%
TTGCTGCGTCGTAGATAGGA+CGG + chr4_2:74767081-74767100 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG + chr4_2:74767129-74767148 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr4_2:74767876-74767895 Msa0622340:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr4_2:74767882-74767901 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG - chr4_2:74768032-74768051 Msa0622340:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG - chr4_2:74768033-74768052 Msa0622340:intron 50.0%
! CCGTGGCTCTTACTGCATTT+TGG - chr4_2:74768146-74768165 Msa0622340:CDS 50.0%
AGATGGGGCAATGAAGGGTT+TGG - chr4_2:74768256-74768275 Msa0622340:CDS 50.0%
ATGGTCTGCTGTGTGAGGAA+AGG - chr4_2:74766853-74766872 Msa0622340:three_prime_UTR 50.0%
TTGCTGCGTCGTAGATAGGA+CGG + chr4_2:74767081-74767100 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG + chr4_2:74767129-74767148 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr4_2:74767876-74767895 Msa0622340:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr4_2:74767882-74767901 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG - chr4_2:74768032-74768051 Msa0622340:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG - chr4_2:74768033-74768052 Msa0622340:intron 50.0%
! CCGTGGCTCTTACTGCATTT+TGG - chr4_2:74768146-74768165 Msa0622340:CDS 50.0%
AGATGGGGCAATGAAGGGTT+TGG - chr4_2:74768256-74768275 Msa0622340:CDS 50.0%
CTGGTTGCTGCGTCGTAGAT+AGG + chr4_2:74767085-74767104 None:intergenic 55.0%
!! TTGAACGGTGCCATCACGGA+TGG + chr4_2:74767125-74767144 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG - chr4_2:74767347-74767366 Msa0622340:CDS 55.0%
CTGGTTGCTGCGTCGTAGAT+AGG + chr4_2:74767085-74767104 None:intergenic 55.0%
!! TTGAACGGTGCCATCACGGA+TGG + chr4_2:74767125-74767144 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG - chr4_2:74767347-74767366 Msa0622340:CDS 55.0%
! GGGTGATGGTCTGCTGTGTG+AGG - chr4_2:74766848-74766867 Msa0622340:three_prime_UTR 60.0%
! GGGTGATGGTCTGCTGTGTG+AGG - chr4_2:74766848-74766867 Msa0622340:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 74766841 74768725 74766841 ID=Msa0622340;Name=Msa0622340
chr4_2 mRNA 74766841 74768725 74766841 ID=Msa0622340-mRNA-1;Parent=Msa0622340;Name=Msa0622340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=166|1|1|1|1|1|3|302|231
chr4_2 exon 74766841 74767458 74766841 ID=Msa0622340-mRNA-1:exon:22639;Parent=Msa0622340-mRNA-1
chr4_2 exon 74768106 74768323 74768106 ID=Msa0622340-mRNA-1:exon:22638;Parent=Msa0622340-mRNA-1
chr4_2 exon 74768398 74768725 74768398 ID=Msa0622340-mRNA-1:exon:22637;Parent=Msa0622340-mRNA-1
chr4_2 five_prime_UTR 74768560 74768725 74768560 ID=Msa0622340-mRNA-1:five_prime_utr;Parent=Msa0622340-mRNA-1
chr4_2 CDS 74768398 74768559 74768398 ID=Msa0622340-mRNA-1:cds;Parent=Msa0622340-mRNA-1
chr4_2 CDS 74768106 74768323 74768106 ID=Msa0622340-mRNA-1:cds;Parent=Msa0622340-mRNA-1
chr4_2 CDS 74767143 74767458 74767143 ID=Msa0622340-mRNA-1:cds;Parent=Msa0622340-mRNA-1
chr4_2 three_prime_UTR 74766841 74767142 74766841 ID=Msa0622340-mRNA-1:three_prime_utr;Parent=Msa0622340-mRNA-1
Gene Sequence

>Msa0622340

ATGCAGGTAATAGCAAAAGCAAAAGCTGAGGAGAAGAAAATCGGAATGACAGAAACATGGTTGAGGAAACACCGTCCTATCTACGACGCAGCAACCAGACACCCTTTTATTCTCTCCATCCGTGATGGCACCGTTCAATCTCATTCCTTCAAAACATGGCTCGCTCAGGATTACTTGTTTGTTAGAGAGTTTGTTCCATTTGTTGCTAGTGTGCTGATTAAAGCTTGCAAGGAATCAGATGACAGTGATGATGTGGAAGTTATATTGGGAGGTATGGCTTCTCTCAAGGATGAAATATTATGGTTTAAGAGAGAAGCCAACAAATGGGGTATTTCACTCTCAGACGTTGTTCCTCAAAAACCTAACAAAAACTATTGCAGGTTGCTGGAAAGTTTGATGAGTCAAGATGTGGATTATACCGTGGCTCTTACTGCATTTTGGGCAATTGAAGTGGTGTATCAAGAGAGTTTTGCACACTGTATTGAAGAAGGCTCAAAAACACCACCAGAATTGAAGGAGACTTGTGAAAGATGGGGCAATGAAGGGTTTGGTCAGTACTGCCAATCTCTGCAAAAGATAGTCAATCAACGCTTGCAGAAGGCTTCTGATGATGAGCTAAAGAAGGCTGAAGTCATGTTGCTGAGTATTATTGAACATGAAGTTCATTTCTGGAATATGAGCCGTGGAAATGTTTGA

Protein sequence

>Msa0622340

MQVIAKAKAEEKKIGMTETWLRKHRPIYDAATRHPFILSIRDGTVQSHSFKTWLAQDYLFVREFVPFVASVLIKACKESDDSDDVEVILGGMASLKDEILWFKREANKWGISLSDVVPQKPNKNYCRLLESLMSQDVDYTVALTAFWAIEVVYQESFAHCIEEGSKTPPELKETCERWGNEGFGQYCQSLQKIVNQRLQKASDDELKKAEVMLLSIIEHEVHFWNMSRGNV*