AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1218650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218650 MtrunA17_Chr4g0068291 96.537 231 8 0 1 231 1 231 9.07e-170 466
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218650 AT3G16990.1 61.187 219 85 0 12 230 2 220 3.69e-101 293

Find 70 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACATGAAGTTCATTTC+TGG 0.178089 8_1:-81296194 Msa1218650:CDS
CCGTGGCTCTTACTGCATTT+TGG 0.179313 8_1:-81296425 Msa1218650:CDS
CTCTCAAGGATGAAATATTA+TGG 0.227534 8_1:-81297210 Msa1218650:CDS
TCACAAGTCTCCTTCAATTC+TGG 0.242363 8_1:+81296339 None:intergenic
TCGATAATTCTTGTTGTTAT+CGG 0.275030 8_1:+81297607 None:intergenic
TCTTGTTCAAAAGAAATCTT+TGG 0.283412 8_1:-81296147 Msa1218650:three_prime_UTR
TCACGGATGGAGAGAATAAA+AGG 0.291539 8_1:+81297462 None:intergenic
TGATGATGTGGAAGTTATAT+TGG 0.334678 8_1:-81297245 Msa1218650:CDS
TAATTAAGCAAGTTAAATAA+AGG 0.410671 8_1:-81296006 Msa1218650:three_prime_UTR
GTATTGTTGTGACAGGTTGC+TGG 0.411321 8_1:-81296478 Msa1218650:intron
TTATAGCTTAAAGTAGTGTA+TGG 0.412585 8_1:-81296068 Msa1218650:three_prime_UTR
TATATAATCGTTCAACTTTG+AGG 0.416279 8_1:+81297641 None:intergenic
CTGGTTGCTGCGTCGTAGAT+AGG 0.419325 8_1:+81297489 None:intergenic
TTAATTGAGTAAGCTGGATC+AGG 0.426672 8_1:-81296034 Msa1218650:three_prime_UTR
GAGTGAAATACCCCATTTGT+TGG 0.441092 8_1:+81297174 None:intergenic
TTACTAGAAGACACTGTTGT+TGG 0.447139 8_1:-81297670 Msa1218650:five_prime_UTR
GATGATGTGGAAGTTATATT+GGG 0.449100 8_1:-81297244 Msa1218650:CDS
GGAGAGAATAAAAGGGTGTC+TGG 0.461311 8_1:+81297470 None:intergenic
AAAGGTCTACTAATGAAATC+AGG 0.461485 8_1:+81295883 None:intergenic
TGAAGGAGACTTGTGAAAGA+TGG 0.462274 8_1:-81296332 Msa1218650:CDS
AGATGGGGCAATGAAGGGTT+TGG 0.462366 8_1:-81296315 Msa1218650:CDS
TGTGAAAGATGGGGCAATGA+AGG 0.463004 8_1:-81296321 Msa1218650:CDS
ATCAGCACACTAGCAACAAA+TGG 0.470279 8_1:+81297295 None:intergenic
GGAAGTTATATTGGGAGGTA+TGG 0.472614 8_1:-81297236 Msa1218650:CDS
TTAAGAGAGAAGCCAACAAA+TGG 0.473045 8_1:-81297186 Msa1218650:CDS
TAAGAGAGAAGCCAACAAAT+GGG 0.484598 8_1:-81297185 Msa1218650:CDS
AAAGCTGAGGAGAAGAAAAT+CGG 0.488939 8_1:-81297543 Msa1218650:CDS
GAAGGAGACTTGTGAAAGAT+GGG 0.493393 8_1:-81296331 Msa1218650:CDS
TCTAGATTAATTGAGTAAGC+TGG 0.497732 8_1:-81296040 Msa1218650:three_prime_UTR
CTAGAAGACACTGTTGTTGG+CGG 0.501982 8_1:-81297667 Msa1218650:five_prime_UTR
TTTGCACACTGTATTGAAGA+AGG 0.504202 8_1:-81296375 Msa1218650:CDS
CAAGTCTCCTTCAATTCTGG+TGG 0.526666 8_1:+81296342 None:intergenic
TTTATTCTCTCCATCCGTGA+TGG 0.534028 8_1:-81297459 Msa1218650:CDS
TATAGCTTAAAGTAGTGTAT+GGG 0.537297 8_1:-81296067 Msa1218650:three_prime_UTR
AACAAGATCAAACATTTCCA+CGG 0.540534 8_1:+81296163 None:intergenic
GGGAGGTATGGCTTCTCTCA+AGG 0.541239 8_1:-81297224 Msa1218650:CDS
AATATAGCGGTGCAAATGGA+AGG 0.541269 8_1:-81297741 None:intergenic
GGTGCAAATGGAAGGGGTGA+TGG 0.542858 8_1:-81297733 None:intergenic
TGTGCTGATTAAAGCTTGCA+AGG 0.548251 8_1:-81297281 Msa1218650:CDS
GTGAAAGATGGGGCAATGAA+GGG 0.556760 8_1:-81296320 Msa1218650:CDS
TTCTGATGATGAGCTAAAGA+AGG 0.559001 8_1:-81296241 Msa1218650:CDS
TAATTGAGTAAGCTGGATCA+GGG 0.561000 8_1:-81296033 Msa1218650:three_prime_UTR
CAGAAGAAAAGAAAAGATGC+AGG 0.565864 8_1:-81297580 Msa1218650:exon
TTCTCCTTATTAATAAAACA+TGG 0.568242 8_1:+81295977 None:intergenic
AATCTCATTCCTTCAAAACA+TGG 0.569007 8_1:-81297428 Msa1218650:CDS
TTGAACGGTGCCATCACGGA+TGG 0.569290 8_1:+81297449 None:intergenic
CACGGATGGAGAGAATAAAA+GGG 0.580740 8_1:+81297463 None:intergenic
GAATGACAGAAACATGGTTG+AGG 0.586301 8_1:-81297521 Msa1218650:CDS
GAGATTGAACGGTGCCATCA+CGG 0.590693 8_1:+81297445 None:intergenic
TATAGCGGTGCAAATGGAAG+GGG 0.597833 8_1:-81297739 None:intergenic
AGTCAATCAACGCTTGCAGA+AGG 0.599951 8_1:-81296265 Msa1218650:CDS
ATCAGATGACAGTGATGATG+TGG 0.605897 8_1:-81297257 Msa1218650:CDS
ATATAGCGGTGCAAATGGAA+GGG 0.606921 8_1:-81297740 None:intergenic
AAGTTTGATGAGTCAAGATG+TGG 0.608940 8_1:-81296454 Msa1218650:CDS
GTGATGGTCTGTGTGAGGAA+AGG 0.610084 8_1:-81297717 Msa1218650:five_prime_UTR
CTTGTTGTTATCGGTGTGTG+AGG 0.612436 8_1:+81297616 None:intergenic
ATAATCGTTCAACTTTGAGG+TGG 0.617175 8_1:+81297644 None:intergenic
AATAGCAAAAGCAAAAGCTG+AGG 0.623925 8_1:-81297556 Msa1218650:CDS
CCAAAATGCAGTAAGAGCCA+CGG 0.640646 8_1:+81296425 None:intergenic
CATTTCTGGAATATGAGCCG+TGG 0.649732 8_1:-81296180 Msa1218650:CDS
TTGCTGCGTCGTAGATAGGA+CGG 0.651431 8_1:+81297493 None:intergenic
AAGAGAGAAGCCAACAAATG+GGG 0.651734 8_1:-81297184 Msa1218650:CDS
TTTGAAGGAATGAGATTGAA+CGG 0.653325 8_1:+81297434 None:intergenic
AAATCGGAATGACAGAAACA+TGG 0.662897 8_1:-81297527 Msa1218650:CDS
AAGGGGTGATGGTCTGTGTG+AGG 0.663954 8_1:-81297722 Msa1218650:five_prime_UTR
AAGGAGACTTGTGAAAGATG+GGG 0.673941 8_1:-81296330 Msa1218650:CDS
AATTGAGTAAGCTGGATCAG+GGG 0.682746 8_1:-81296032 Msa1218650:three_prime_UTR
TCAAGATGTGGATTATACCG+TGG 0.702449 8_1:-81296442 Msa1218650:CDS
TAAAGCGCTCACATTGCACG+TGG 0.725292 8_1:+81297690 None:intergenic
GATGTGGAAGTTATATTGGG+AGG 0.743012 8_1:-81297241 Msa1218650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAGCAAGTTAAATAA+AGG - chr8_1:81297588-81297607 Msa1218650:five_prime_UTR 15.0%
!! TAATTAAGCAAGTTAAATAA+AGG - chr8_1:81297588-81297607 Msa1218650:five_prime_UTR 15.0%
!!! TCAATTTATTTCAATTTTGC+AGG - chr8_1:81296244-81296263 Msa1218650:CDS 20.0%
!!! TTCATAATGAGTTCTAATAA+CGG + chr8_1:81296524-81296543 None:intergenic 20.0%
!! TCAAATAAGTCAATTTAAAC+AGG + chr8_1:81296606-81296625 None:intergenic 20.0%
!!! AGTTGTTTTTCCATATAAAA+GGG - chr8_1:81296671-81296690 Msa1218650:intron 20.0%
!! CAATTATATTAATAGAGATG+TGG - chr8_1:81296734-81296753 Msa1218650:intron 20.0%
!!! TGTACCATGTTTTATTAATA+AGG - chr8_1:81297613-81297632 Msa1218650:five_prime_UTR 20.0%
!! TTCTCCTTATTAATAAAACA+TGG + chr8_1:81297620-81297639 None:intergenic 20.0%
!!! TCAATTTATTTCAATTTTGC+AGG - chr8_1:81296244-81296263 Msa1218650:CDS 20.0%
!!! TTCATAATGAGTTCTAATAA+CGG + chr8_1:81296524-81296543 None:intergenic 20.0%
!! TCAAATAAGTCAATTTAAAC+AGG + chr8_1:81296606-81296625 None:intergenic 20.0%
!!! AGTTGTTTTTCCATATAAAA+GGG - chr8_1:81296671-81296690 Msa1218650:intron 20.0%
!! CAATTATATTAATAGAGATG+TGG - chr8_1:81296734-81296753 Msa1218650:intron 20.0%
!!! TGTACCATGTTTTATTAATA+AGG - chr8_1:81297613-81297632 Msa1218650:five_prime_UTR 20.0%
!! TTCTCCTTATTAATAAAACA+TGG + chr8_1:81297620-81297639 None:intergenic 20.0%
! TATATAATCGTTCAACTTTG+AGG + chr8_1:81295956-81295975 None:intergenic 25.0%
!!! TCGATAATTCTTGTTGTTAT+CGG + chr8_1:81295990-81296009 None:intergenic 25.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG + chr8_1:81296458-81296477 None:intergenic 25.0%
! GTTATTAGAACTCATTATGA+AGG - chr8_1:81296523-81296542 Msa1218650:intron 25.0%
! ACTCATTATGAAGGTTTATT+TGG - chr8_1:81296532-81296551 Msa1218650:intron 25.0%
! CTCATTATGAAGGTTTATTT+GGG - chr8_1:81296533-81296552 Msa1218650:intron 25.0%
! TCATTATGAAGGTTTATTTG+GGG - chr8_1:81296534-81296553 Msa1218650:intron 25.0%
!!! CAGTTGTTTTTCCATATAAA+AGG - chr8_1:81296670-81296689 Msa1218650:intron 25.0%
! TACATGCTCATAATTATCTA+GGG + chr8_1:81297099-81297118 None:intergenic 25.0%
! ATACATGCTCATAATTATCT+AGG + chr8_1:81297100-81297119 None:intergenic 25.0%
! TCTTGTTCAAAAGAAATCTT+TGG - chr8_1:81297447-81297466 Msa1218650:CDS 25.0%
! TTATAGCTTAAAGTAGTGTA+TGG - chr8_1:81297526-81297545 Msa1218650:CDS 25.0%
! TATAGCTTAAAGTAGTGTAT+GGG - chr8_1:81297527-81297546 Msa1218650:CDS 25.0%
! TATATAATCGTTCAACTTTG+AGG + chr8_1:81295956-81295975 None:intergenic 25.0%
!!! TCGATAATTCTTGTTGTTAT+CGG + chr8_1:81295990-81296009 None:intergenic 25.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG + chr8_1:81296458-81296477 None:intergenic 25.0%
! GTTATTAGAACTCATTATGA+AGG - chr8_1:81296523-81296542 Msa1218650:intron 25.0%
! ACTCATTATGAAGGTTTATT+TGG - chr8_1:81296532-81296551 Msa1218650:intron 25.0%
! CTCATTATGAAGGTTTATTT+GGG - chr8_1:81296533-81296552 Msa1218650:intron 25.0%
! TCATTATGAAGGTTTATTTG+GGG - chr8_1:81296534-81296553 Msa1218650:intron 25.0%
!!! CAGTTGTTTTTCCATATAAA+AGG - chr8_1:81296670-81296689 Msa1218650:intron 25.0%
! TACATGCTCATAATTATCTA+GGG + chr8_1:81297099-81297118 None:intergenic 25.0%
! ATACATGCTCATAATTATCT+AGG + chr8_1:81297100-81297119 None:intergenic 25.0%
! TCTTGTTCAAAAGAAATCTT+TGG - chr8_1:81297447-81297466 Msa1218650:CDS 25.0%
! TTATAGCTTAAAGTAGTGTA+TGG - chr8_1:81297526-81297545 Msa1218650:CDS 25.0%
! TATAGCTTAAAGTAGTGTAT+GGG - chr8_1:81297527-81297546 Msa1218650:CDS 25.0%
TTTGAAGGAATGAGATTGAA+CGG + chr8_1:81296163-81296182 None:intergenic 30.0%
AATCTCATTCCTTCAAAACA+TGG - chr8_1:81296166-81296185 Msa1218650:exon 30.0%
! TGATGATGTGGAAGTTATAT+TGG - chr8_1:81296349-81296368 Msa1218650:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG - chr8_1:81296350-81296369 Msa1218650:CDS 30.0%
CTCTCAAGGATGAAATATTA+TGG - chr8_1:81296384-81296403 Msa1218650:CDS 30.0%
AACCTAACAAAAACTATTGC+AGG - chr8_1:81296462-81296481 Msa1218650:CDS 30.0%
! TACCTGCAATAGTTTTTGTT+AGG + chr8_1:81296467-81296486 None:intergenic 30.0%
!!! TCTAGTTTTTGCTAGTATAC+CGG - chr8_1:81296576-81296595 Msa1218650:intron 30.0%
TTTGACCTTATCTACTGTAT+AGG - chr8_1:81296621-81296640 Msa1218650:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG + chr8_1:81296875-81296894 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG + chr8_1:81296876-81296895 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr8_1:81296996-81297015 Msa1218650:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr8_1:81297024-81297043 Msa1218650:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr8_1:81297025-81297044 Msa1218650:intron 30.0%
ACATGCTCATAATTATCTAG+GGG + chr8_1:81297098-81297117 None:intergenic 30.0%
TTGAACATGAAGTTCATTTC+TGG - chr8_1:81297400-81297419 Msa1218650:intron 30.0%
AACAAGATCAAACATTTCCA+CGG + chr8_1:81297434-81297453 None:intergenic 30.0%
TCTAGATTAATTGAGTAAGC+TGG - chr8_1:81297554-81297573 Msa1218650:CDS 30.0%
AAAGGTCTACTAATGAAATC+AGG + chr8_1:81297714-81297733 None:intergenic 30.0%
TTTGAAGGAATGAGATTGAA+CGG + chr8_1:81296163-81296182 None:intergenic 30.0%
AATCTCATTCCTTCAAAACA+TGG - chr8_1:81296166-81296185 Msa1218650:exon 30.0%
! TGATGATGTGGAAGTTATAT+TGG - chr8_1:81296349-81296368 Msa1218650:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG - chr8_1:81296350-81296369 Msa1218650:CDS 30.0%
CTCTCAAGGATGAAATATTA+TGG - chr8_1:81296384-81296403 Msa1218650:CDS 30.0%
AACCTAACAAAAACTATTGC+AGG - chr8_1:81296462-81296481 Msa1218650:CDS 30.0%
! TACCTGCAATAGTTTTTGTT+AGG + chr8_1:81296467-81296486 None:intergenic 30.0%
!!! TCTAGTTTTTGCTAGTATAC+CGG - chr8_1:81296576-81296595 Msa1218650:intron 30.0%
TTTGACCTTATCTACTGTAT+AGG - chr8_1:81296621-81296640 Msa1218650:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG + chr8_1:81296875-81296894 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG + chr8_1:81296876-81296895 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr8_1:81296996-81297015 Msa1218650:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr8_1:81297024-81297043 Msa1218650:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr8_1:81297025-81297044 Msa1218650:intron 30.0%
ACATGCTCATAATTATCTAG+GGG + chr8_1:81297098-81297117 None:intergenic 30.0%
TTGAACATGAAGTTCATTTC+TGG - chr8_1:81297400-81297419 Msa1218650:intron 30.0%
AACAAGATCAAACATTTCCA+CGG + chr8_1:81297434-81297453 None:intergenic 30.0%
TCTAGATTAATTGAGTAAGC+TGG - chr8_1:81297554-81297573 Msa1218650:CDS 30.0%
AAAGGTCTACTAATGAAATC+AGG + chr8_1:81297714-81297733 None:intergenic 30.0%
TTACTAGAAGACACTGTTGT+TGG - chr8_1:81295924-81295943 Msa1218650:three_prime_UTR 35.0%
! ATAATCGTTCAACTTTGAGG+TGG + chr8_1:81295953-81295972 None:intergenic 35.0%
CAGAAGAAAAGAAAAGATGC+AGG - chr8_1:81296014-81296033 Msa1218650:three_prime_UTR 35.0%
AATAGCAAAAGCAAAAGCTG+AGG - chr8_1:81296038-81296057 Msa1218650:three_prime_UTR 35.0%
AAAGCTGAGGAGAAGAAAAT+CGG - chr8_1:81296051-81296070 Msa1218650:three_prime_UTR 35.0%
AAATCGGAATGACAGAAACA+TGG - chr8_1:81296067-81296086 Msa1218650:three_prime_UTR 35.0%
! TATTTCAATTTTGCAGGCTC+AGG - chr8_1:81296250-81296269 Msa1218650:CDS 35.0%
TTAAGAGAGAAGCCAACAAA+TGG - chr8_1:81296408-81296427 Msa1218650:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG - chr8_1:81296409-81296428 Msa1218650:CDS 35.0%
! AATGAGTTCTAATAACGGCA+TGG + chr8_1:81296519-81296538 None:intergenic 35.0%
GTTCTCCTATACAGTAGATA+AGG + chr8_1:81296629-81296648 None:intergenic 35.0%
! GTTACACACACCCTTTTATA+TGG + chr8_1:81296684-81296703 None:intergenic 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG - chr8_1:81296828-81296847 Msa1218650:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG - chr8_1:81296829-81296848 Msa1218650:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr8_1:81296932-81296951 Msa1218650:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr8_1:81296932-81296951 Msa1218650:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr8_1:81296995-81297014 Msa1218650:intron 35.0%
AAGTTTGATGAGTCAAGATG+TGG - chr8_1:81297140-81297159 Msa1218650:CDS 35.0%
TTTGCACACTGTATTGAAGA+AGG - chr8_1:81297219-81297238 Msa1218650:CDS 35.0%
AAAAACACCACCAGAATTGA+AGG - chr8_1:81297245-81297264 Msa1218650:CDS 35.0%
! TGACTATCTTTTGCAGAGAT+TGG + chr8_1:81297314-81297333 None:intergenic 35.0%
! TTCTGATGATGAGCTAAAGA+AGG - chr8_1:81297353-81297372 Msa1218650:intron 35.0%
TTAATTGAGTAAGCTGGATC+AGG - chr8_1:81297560-81297579 Msa1218650:CDS 35.0%
TAATTGAGTAAGCTGGATCA+GGG - chr8_1:81297561-81297580 Msa1218650:CDS 35.0%
TTACTAGAAGACACTGTTGT+TGG - chr8_1:81295924-81295943 Msa1218650:three_prime_UTR 35.0%
! ATAATCGTTCAACTTTGAGG+TGG + chr8_1:81295953-81295972 None:intergenic 35.0%
CAGAAGAAAAGAAAAGATGC+AGG - chr8_1:81296014-81296033 Msa1218650:three_prime_UTR 35.0%
AATAGCAAAAGCAAAAGCTG+AGG - chr8_1:81296038-81296057 Msa1218650:three_prime_UTR 35.0%
AAAGCTGAGGAGAAGAAAAT+CGG - chr8_1:81296051-81296070 Msa1218650:three_prime_UTR 35.0%
AAATCGGAATGACAGAAACA+TGG - chr8_1:81296067-81296086 Msa1218650:three_prime_UTR 35.0%
! TATTTCAATTTTGCAGGCTC+AGG - chr8_1:81296250-81296269 Msa1218650:CDS 35.0%
TTAAGAGAGAAGCCAACAAA+TGG - chr8_1:81296408-81296427 Msa1218650:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG - chr8_1:81296409-81296428 Msa1218650:CDS 35.0%
! AATGAGTTCTAATAACGGCA+TGG + chr8_1:81296519-81296538 None:intergenic 35.0%
GTTCTCCTATACAGTAGATA+AGG + chr8_1:81296629-81296648 None:intergenic 35.0%
! GTTACACACACCCTTTTATA+TGG + chr8_1:81296684-81296703 None:intergenic 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG - chr8_1:81296828-81296847 Msa1218650:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG - chr8_1:81296829-81296848 Msa1218650:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr8_1:81296932-81296951 Msa1218650:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr8_1:81296932-81296951 Msa1218650:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr8_1:81296995-81297014 Msa1218650:intron 35.0%
AAGTTTGATGAGTCAAGATG+TGG - chr8_1:81297140-81297159 Msa1218650:CDS 35.0%
TTTGCACACTGTATTGAAGA+AGG - chr8_1:81297219-81297238 Msa1218650:CDS 35.0%
AAAAACACCACCAGAATTGA+AGG - chr8_1:81297245-81297264 Msa1218650:CDS 35.0%
! TGACTATCTTTTGCAGAGAT+TGG + chr8_1:81297314-81297333 None:intergenic 35.0%
! TTCTGATGATGAGCTAAAGA+AGG - chr8_1:81297353-81297372 Msa1218650:intron 35.0%
TTAATTGAGTAAGCTGGATC+AGG - chr8_1:81297560-81297579 Msa1218650:CDS 35.0%
TAATTGAGTAAGCTGGATCA+GGG - chr8_1:81297561-81297580 Msa1218650:CDS 35.0%
GAATGACAGAAACATGGTTG+AGG - chr8_1:81296073-81296092 Msa1218650:three_prime_UTR 40.0%
CACGGATGGAGAGAATAAAA+GGG + chr8_1:81296134-81296153 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG + chr8_1:81296135-81296154 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG - chr8_1:81296135-81296154 Msa1218650:three_prime_UTR 40.0%
!! ACTTACGAGCCATGTTTTGA+AGG + chr8_1:81296178-81296197 None:intergenic 40.0%
ATCAGCACACTAGCAACAAA+TGG + chr8_1:81296302-81296321 None:intergenic 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG - chr8_1:81296313-81296332 Msa1218650:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG - chr8_1:81296337-81296356 Msa1218650:CDS 40.0%
GATGTGGAAGTTATATTGGG+AGG - chr8_1:81296353-81296372 Msa1218650:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG - chr8_1:81296358-81296377 Msa1218650:CDS 40.0%
AAGAGAGAAGCCAACAAATG+GGG - chr8_1:81296410-81296429 Msa1218650:CDS 40.0%
GAGTGAAATACCCCATTTGT+TGG + chr8_1:81296423-81296442 None:intergenic 40.0%
! GTTTTTGCTAGTATACCGGT+AGG - chr8_1:81296580-81296599 Msa1218650:intron 40.0%
GTCAATTTAAACAGGCCTAC+CGG + chr8_1:81296598-81296617 None:intergenic 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr8_1:81296931-81296950 Msa1218650:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr8_1:81296931-81296950 Msa1218650:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr8_1:81297071-81297090 None:intergenic 40.0%
TGAGCATGTATTGTTGTGAC+AGG - chr8_1:81297109-81297128 Msa1218650:intron 40.0%
! TCAAGATGTGGATTATACCG+TGG - chr8_1:81297152-81297171 Msa1218650:CDS 40.0%
! TGCATTTTGGGCAATTGAAG+TGG - chr8_1:81297182-81297201 Msa1218650:CDS 40.0%
TCACAAGTCTCCTTCAATTC+TGG + chr8_1:81297258-81297277 None:intergenic 40.0%
TGAAGGAGACTTGTGAAAGA+TGG - chr8_1:81297262-81297281 Msa1218650:CDS 40.0%
GAAGGAGACTTGTGAAAGAT+GGG - chr8_1:81297263-81297282 Msa1218650:CDS 40.0%
AAGGAGACTTGTGAAAGATG+GGG - chr8_1:81297264-81297283 Msa1218650:CDS 40.0%
AATTGAGTAAGCTGGATCAG+GGG - chr8_1:81297562-81297581 Msa1218650:CDS 40.0%
GAATGACAGAAACATGGTTG+AGG - chr8_1:81296073-81296092 Msa1218650:three_prime_UTR 40.0%
CACGGATGGAGAGAATAAAA+GGG + chr8_1:81296134-81296153 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG + chr8_1:81296135-81296154 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG - chr8_1:81296135-81296154 Msa1218650:three_prime_UTR 40.0%
!! ACTTACGAGCCATGTTTTGA+AGG + chr8_1:81296178-81296197 None:intergenic 40.0%
ATCAGCACACTAGCAACAAA+TGG + chr8_1:81296302-81296321 None:intergenic 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG - chr8_1:81296313-81296332 Msa1218650:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG - chr8_1:81296337-81296356 Msa1218650:CDS 40.0%
GATGTGGAAGTTATATTGGG+AGG - chr8_1:81296353-81296372 Msa1218650:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG - chr8_1:81296358-81296377 Msa1218650:CDS 40.0%
AAGAGAGAAGCCAACAAATG+GGG - chr8_1:81296410-81296429 Msa1218650:CDS 40.0%
GAGTGAAATACCCCATTTGT+TGG + chr8_1:81296423-81296442 None:intergenic 40.0%
! GTTTTTGCTAGTATACCGGT+AGG - chr8_1:81296580-81296599 Msa1218650:intron 40.0%
GTCAATTTAAACAGGCCTAC+CGG + chr8_1:81296598-81296617 None:intergenic 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr8_1:81296931-81296950 Msa1218650:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr8_1:81296931-81296950 Msa1218650:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr8_1:81297071-81297090 None:intergenic 40.0%
TGAGCATGTATTGTTGTGAC+AGG - chr8_1:81297109-81297128 Msa1218650:intron 40.0%
! TCAAGATGTGGATTATACCG+TGG - chr8_1:81297152-81297171 Msa1218650:CDS 40.0%
! TGCATTTTGGGCAATTGAAG+TGG - chr8_1:81297182-81297201 Msa1218650:CDS 40.0%
TCACAAGTCTCCTTCAATTC+TGG + chr8_1:81297258-81297277 None:intergenic 40.0%
TGAAGGAGACTTGTGAAAGA+TGG - chr8_1:81297262-81297281 Msa1218650:CDS 40.0%
GAAGGAGACTTGTGAAAGAT+GGG - chr8_1:81297263-81297282 Msa1218650:CDS 40.0%
AAGGAGACTTGTGAAAGATG+GGG - chr8_1:81297264-81297283 Msa1218650:CDS 40.0%
AATTGAGTAAGCTGGATCAG+GGG - chr8_1:81297562-81297581 Msa1218650:CDS 40.0%
CTAGAAGACACTGTTGTTGG+CGG - chr8_1:81295927-81295946 Msa1218650:three_prime_UTR 45.0%
!! CTTGTTGTTATCGGTGTGTG+AGG + chr8_1:81295981-81296000 None:intergenic 45.0%
!! GGAGAGAATAAAAGGGTGTC+TGG + chr8_1:81296127-81296146 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG + chr8_1:81296844-81296863 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG + chr8_1:81296845-81296864 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG - chr8_1:81296888-81296907 Msa1218650:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr8_1:81296900-81296919 Msa1218650:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr8_1:81296904-81296923 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG + chr8_1:81297066-81297085 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG + chr8_1:81297067-81297086 None:intergenic 45.0%
GTATTGTTGTGACAGGTTGC+TGG - chr8_1:81297116-81297135 Msa1218650:intron 45.0%
CCAAAATGCAGTAAGAGCCA+CGG + chr8_1:81297172-81297191 None:intergenic 45.0%
! CGTGGCTCTTACTGCATTTT+GGG - chr8_1:81297170-81297189 Msa1218650:CDS 45.0%
CAAGTCTCCTTCAATTCTGG+TGG + chr8_1:81297255-81297274 None:intergenic 45.0%
TGTGAAAGATGGGGCAATGA+AGG - chr8_1:81297273-81297292 Msa1218650:CDS 45.0%
GTGAAAGATGGGGCAATGAA+GGG - chr8_1:81297274-81297293 Msa1218650:CDS 45.0%
AGTCAATCAACGCTTGCAGA+AGG - chr8_1:81297329-81297348 Msa1218650:CDS 45.0%
!! CATTTCTGGAATATGAGCCG+TGG - chr8_1:81297414-81297433 Msa1218650:intron 45.0%
CTAGAAGACACTGTTGTTGG+CGG - chr8_1:81295927-81295946 Msa1218650:three_prime_UTR 45.0%
!! CTTGTTGTTATCGGTGTGTG+AGG + chr8_1:81295981-81296000 None:intergenic 45.0%
!! GGAGAGAATAAAAGGGTGTC+TGG + chr8_1:81296127-81296146 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG + chr8_1:81296844-81296863 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG + chr8_1:81296845-81296864 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG - chr8_1:81296888-81296907 Msa1218650:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr8_1:81296900-81296919 Msa1218650:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr8_1:81296904-81296923 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG + chr8_1:81297066-81297085 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG + chr8_1:81297067-81297086 None:intergenic 45.0%
GTATTGTTGTGACAGGTTGC+TGG - chr8_1:81297116-81297135 Msa1218650:intron 45.0%
CCAAAATGCAGTAAGAGCCA+CGG + chr8_1:81297172-81297191 None:intergenic 45.0%
! CGTGGCTCTTACTGCATTTT+GGG - chr8_1:81297170-81297189 Msa1218650:CDS 45.0%
CAAGTCTCCTTCAATTCTGG+TGG + chr8_1:81297255-81297274 None:intergenic 45.0%
TGTGAAAGATGGGGCAATGA+AGG - chr8_1:81297273-81297292 Msa1218650:CDS 45.0%
GTGAAAGATGGGGCAATGAA+GGG - chr8_1:81297274-81297293 Msa1218650:CDS 45.0%
AGTCAATCAACGCTTGCAGA+AGG - chr8_1:81297329-81297348 Msa1218650:CDS 45.0%
!! CATTTCTGGAATATGAGCCG+TGG - chr8_1:81297414-81297433 Msa1218650:intron 45.0%
GTGATGGTCTGTGTGAGGAA+AGG - chr8_1:81295877-81295896 Msa1218650:three_prime_UTR 50.0%
! TAAAGCGCTCACATTGCACG+TGG + chr8_1:81295907-81295926 None:intergenic 50.0%
TTGCTGCGTCGTAGATAGGA+CGG + chr8_1:81296104-81296123 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG + chr8_1:81296152-81296171 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr8_1:81296899-81296918 Msa1218650:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr8_1:81296905-81296924 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG - chr8_1:81297055-81297074 Msa1218650:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG - chr8_1:81297056-81297075 Msa1218650:intron 50.0%
! CCGTGGCTCTTACTGCATTT+TGG - chr8_1:81297169-81297188 Msa1218650:CDS 50.0%
AGATGGGGCAATGAAGGGTT+TGG - chr8_1:81297279-81297298 Msa1218650:CDS 50.0%
GTGATGGTCTGTGTGAGGAA+AGG - chr8_1:81295877-81295896 Msa1218650:three_prime_UTR 50.0%
! TAAAGCGCTCACATTGCACG+TGG + chr8_1:81295907-81295926 None:intergenic 50.0%
TTGCTGCGTCGTAGATAGGA+CGG + chr8_1:81296104-81296123 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG + chr8_1:81296152-81296171 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr8_1:81296899-81296918 Msa1218650:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr8_1:81296905-81296924 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG - chr8_1:81297055-81297074 Msa1218650:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG - chr8_1:81297056-81297075 Msa1218650:intron 50.0%
! CCGTGGCTCTTACTGCATTT+TGG - chr8_1:81297169-81297188 Msa1218650:CDS 50.0%
AGATGGGGCAATGAAGGGTT+TGG - chr8_1:81297279-81297298 Msa1218650:CDS 50.0%
! AAGGGGTGATGGTCTGTGTG+AGG - chr8_1:81295872-81295891 Msa1218650:three_prime_UTR 55.0%
CTGGTTGCTGCGTCGTAGAT+AGG + chr8_1:81296108-81296127 None:intergenic 55.0%
!! TTGAACGGTGCCATCACGGA+TGG + chr8_1:81296148-81296167 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG - chr8_1:81296370-81296389 Msa1218650:CDS 55.0%
! AAGGGGTGATGGTCTGTGTG+AGG - chr8_1:81295872-81295891 Msa1218650:three_prime_UTR 55.0%
CTGGTTGCTGCGTCGTAGAT+AGG + chr8_1:81296108-81296127 None:intergenic 55.0%
!! TTGAACGGTGCCATCACGGA+TGG + chr8_1:81296148-81296167 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG - chr8_1:81296370-81296389 Msa1218650:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 81295868 81297748 81295868 ID=Msa1218650;Name=Msa1218650
chr8_1 mRNA 81295868 81297748 81295868 ID=Msa1218650-mRNA-1;Parent=Msa1218650;Name=Msa1218650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=162|1|1|1|1|1|3|302|231
chr8_1 exon 81295868 81296485 81295868 ID=Msa1218650-mRNA-1:exon:28761;Parent=Msa1218650-mRNA-1
chr8_1 exon 81297133 81297350 81297133 ID=Msa1218650-mRNA-1:exon:28760;Parent=Msa1218650-mRNA-1
chr8_1 exon 81297425 81297748 81297425 ID=Msa1218650-mRNA-1:exon:28759;Parent=Msa1218650-mRNA-1
chr8_1 five_prime_UTR 81297587 81297748 81297587 ID=Msa1218650-mRNA-1:five_prime_utr;Parent=Msa1218650-mRNA-1
chr8_1 CDS 81297425 81297586 81297425 ID=Msa1218650-mRNA-1:cds;Parent=Msa1218650-mRNA-1
chr8_1 CDS 81297133 81297350 81297133 ID=Msa1218650-mRNA-1:cds;Parent=Msa1218650-mRNA-1
chr8_1 CDS 81296170 81296485 81296170 ID=Msa1218650-mRNA-1:cds;Parent=Msa1218650-mRNA-1
chr8_1 three_prime_UTR 81295868 81296169 81295868 ID=Msa1218650-mRNA-1:three_prime_utr;Parent=Msa1218650-mRNA-1
Gene Sequence

>Msa1218650

ATGCAGGTAATAGCAAAAGCAAAAGCTGAGGAGAAGAAAATCGGAATGACAGAAACATGGTTGAGGAAACACCGTCCTATCTACGACGCAGCAACCAGACACCCTTTTATTCTCTCCATCCGTGATGGCACCGTTCAATCTCATTCCTTCAAAACATGGCTCGCTCAGGATTACTTGTTTGTTAGAGAGTTTGTTCCATTTGTTGCTAGTGTGCTGATTAAAGCTTGCAAGGAATCAGATGACAGTGATGATGTGGAAGTTATATTGGGAGGTATGGCTTCTCTCAAGGATGAAATATTATGGTTTAAGAGAGAAGCCAACAAATGGGGTATTTCACTCTCAGACGTTGTTCCTCAAAAACCTAACAAAAACTATTGCAGGTTGCTGGAAAGTTTGATGAGTCAAGATGTGGATTATACCGTGGCTCTTACTGCATTTTGGGCAATTGAAGTGGTGTATCAAGAGAGTTTTGCACACTGTATTGAAGAAGGCTCAAAAACACCACCAGAATTGAAGGAGACTTGTGAAAGATGGGGCAATGAAGGGTTTGGTCAGTACTGCCAATCTCTGCAAAAGATAGTCAATCAACGCTTGCAGAAGGCTTCTGATGATGAGCTAAAGAAGGCTGAAGTCATGTTGCTGAGTATTATTGAACATGAAGTTCATTTCTGGAATATGAGCCGTGGAAATGTTTGA

Protein sequence

>Msa1218650

MQVIAKAKAEEKKIGMTETWLRKHRPIYDAATRHPFILSIRDGTVQSHSFKTWLAQDYLFVREFVPFVASVLIKACKESDDSDDVEVILGGMASLKDEILWFKREANKWGISLSDVVPQKPNKNYCRLLESLMSQDVDYTVALTAFWAIEVVYQESFAHCIEEGSKTPPELKETCERWGNEGFGQYCQSLQKIVNQRLQKASDDELKKAEVMLLSIIEHEVHFWNMSRGNV*