Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207310 | XP_003601610.1 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 5.98e-165 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207310 | sp|Q9LHP2|SL30A_ARATH | 62.400 | 250 | 74 | 8 | 1 | 248 | 1 | 232 | 2.95e-75 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207310 | G7J9M2 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 2.85e-165 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0207310 | Msa0350870 | -0.829971 | 3.818689e-55 | -8.615850e-47 |
| Msa0207310 | Msa0381600 | 0.811467 | 6.900620e-51 | -8.615850e-47 |
| Msa0207310 | Msa0426820 | 0.855043 | 8.220831e-62 | -8.615850e-47 |
| Msa0207310 | Msa0440040 | -0.825738 | 3.980617e-54 | -8.615850e-47 |
| Msa0207310 | Msa0443290 | -0.801555 | 8.520592e-49 | -8.615850e-47 |
| Msa0207310 | Msa0454880 | -0.800633 | 1.315163e-48 | -8.615850e-47 |
| Msa0207310 | Msa0467150 | 0.806804 | 6.884058e-50 | -8.615850e-47 |
| Msa0207310 | Msa0469940 | 0.806044 | 9.959720e-50 | -8.615850e-47 |
| Msa0207310 | Msa0490870 | -0.813186 | 2.907466e-51 | -8.615850e-47 |
| Msa0207310 | Msa0492880 | -0.834700 | 2.575164e-56 | -8.615850e-47 |
| Msa0207310 | Msa0498220 | -0.813482 | 2.503215e-51 | -8.615850e-47 |
| Msa0207310 | Msa0532810 | 0.805979 | 1.027445e-49 | -8.615850e-47 |
| Msa0207310 | Msa0613460 | -0.802678 | 5.006713e-49 | -8.615850e-47 |
| Msa0207310 | Msa0832490 | -0.810879 | 9.256133e-51 | -8.615850e-47 |
| Msa0207310 | Msa1068200 | 0.808982 | 2.369781e-50 | -8.615850e-47 |
| Msa0207310 | Msa1075220 | 0.809409 | 1.919572e-50 | -8.615850e-47 |
| Msa0207310 | Msa1139000 | 0.800204 | 1.608641e-48 | -8.615850e-47 |
| Msa0207310 | Msa1144720 | 0.811617 | 6.402015e-51 | -8.615850e-47 |
| Msa0207310 | Msa1156340 | 0.815380 | 9.523375e-52 | -8.615850e-47 |
| Msa0207310 | Msa1171730 | -0.836517 | 8.934563e-57 | -8.615850e-47 |
| Msa0207310 | Msa1184530 | -0.835999 | 1.209623e-56 | -8.615850e-47 |
| Msa0207310 | Msa1184550 | -0.817854 | 2.656353e-52 | -8.615850e-47 |
| Msa0207310 | Msa1262990 | 0.813036 | 3.135722e-51 | -8.615850e-47 |
| Msa0207310 | Msa1264860 | 0.804772 | 1.840299e-49 | -8.615850e-47 |
| Msa0207310 | Msa1393410 | -0.801182 | 1.015821e-48 | -8.615850e-47 |
| Msa0207310 | Msa1435420 | -0.801990 | 6.937873e-49 | -8.615850e-47 |
| Msa0207310 | Msa1451620 | 0.806467 | 8.111561e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207310 | MtrunA17_Chr3g0121251 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 5.50e-169 | 466 |
| Msa0207310 | MtrunA17_Chr4g0066591 | 61.538 | 91 | 35 | 0 | 39 | 129 | 46 | 136 | 2.26e-34 | 122 |
| Msa0207310 | MtrunA17_Chr1g0176111 | 64.348 | 115 | 19 | 4 | 80 | 188 | 2 | 100 | 4.08e-33 | 117 |
| Msa0207310 | MtrunA17_Chr1g0176121 | 80.488 | 41 | 8 | 0 | 39 | 79 | 41 | 81 | 5.36e-18 | 76.6 |
| Msa0207310 | MtrunA17_Chr5g0435241 | 62.745 | 51 | 19 | 0 | 80 | 130 | 10 | 60 | 6.04e-16 | 74.3 |
| Msa0207310 | MtrunA17_Chr4g0050441 | 41.558 | 77 | 45 | 0 | 42 | 118 | 17 | 93 | 6.28e-13 | 67.0 |
| Msa0207310 | MtrunA17_Chr5g0435231 | 62.791 | 43 | 16 | 0 | 42 | 84 | 48 | 90 | 1.37e-12 | 63.2 |
| Msa0207310 | MtrunA17_Chr5g0429941 | 40.260 | 77 | 46 | 0 | 42 | 118 | 17 | 93 | 4.23e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207310 | AT3G13570.1 | 62.400 | 250 | 74 | 8 | 1 | 248 | 1 | 232 | 2.99e-76 | 232 |
| Msa0207310 | AT1G55310.5 | 62.500 | 232 | 71 | 5 | 1 | 232 | 1 | 216 | 1.64e-71 | 218 |
| Msa0207310 | AT1G55310.2 | 62.500 | 232 | 71 | 5 | 1 | 232 | 1 | 216 | 1.64e-71 | 218 |
| Msa0207310 | AT1G55310.1 | 62.719 | 228 | 69 | 5 | 1 | 228 | 1 | 212 | 4.52e-69 | 214 |
| Msa0207310 | AT1G55310.3 | 60.169 | 236 | 66 | 6 | 1 | 224 | 1 | 220 | 8.03e-66 | 206 |
| Msa0207310 | AT5G18810.2 | 57.407 | 108 | 46 | 0 | 36 | 143 | 42 | 149 | 6.35e-37 | 130 |
| Msa0207310 | AT5G18810.1 | 57.407 | 108 | 46 | 0 | 36 | 143 | 42 | 149 | 6.52e-37 | 130 |
| Msa0207310 | AT3G55460.1 | 57.895 | 95 | 40 | 0 | 43 | 137 | 49 | 143 | 3.48e-34 | 124 |
| Msa0207310 | AT1G55310.6 | 55.882 | 136 | 48 | 5 | 90 | 224 | 1 | 125 | 1.61e-27 | 105 |
| Msa0207310 | AT1G55310.7 | 55.882 | 136 | 48 | 5 | 90 | 224 | 1 | 125 | 1.61e-27 | 105 |
| Msa0207310 | AT1G55310.4 | 56.296 | 135 | 48 | 4 | 90 | 224 | 1 | 124 | 1.54e-21 | 89.4 |
| Msa0207310 | AT5G64200.2 | 39.130 | 92 | 54 | 1 | 42 | 131 | 17 | 108 | 1.93e-13 | 68.9 |
| Msa0207310 | AT5G64200.1 | 39.130 | 92 | 54 | 1 | 42 | 131 | 17 | 108 | 1.93e-13 | 68.9 |
Find 103 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAGACCTTTCGGTCATTT+TGG | 0.233664 | 2_1:+38015376 | Msa0207310:CDS |
| GCTTCTCACATCCCCGTTCT+TGG | 0.247700 | 2_1:-38017543 | None:intergenic |
| TGAGACCGAAGGAGTTATTT+TGG | 0.251450 | 2_1:-38017911 | None:intergenic |
| CTCGTTCACCCCGCTATTCC+CGG | 0.259956 | 2_1:+38017032 | Msa0207310:CDS |
| TACAGGCAACCTCGTGGTTT+TGG | 0.283342 | 2_1:+38015854 | Msa0207310:intron |
| TAGATTTAGTAGAATTATAT+TGG | 0.296374 | 2_1:+38017834 | Msa0207310:three_prime_UTR |
| CTTGAATATTCCCTTCGTTT+AGG | 0.306626 | 2_1:-38017112 | None:intergenic |
| TGACCCAGTGTAATAATCTT+TGG | 0.309546 | 2_1:-38015422 | None:intergenic |
| GACCCAGTGTAATAATCTTT+GGG | 0.342581 | 2_1:-38015421 | None:intergenic |
| ATGGATGGTCAAGTTCTTCT+TGG | 0.350938 | 2_1:+38015926 | Msa0207310:CDS |
| AGAAGAGGCGGCGGAGGAGG+AGG | 0.372933 | 2_1:+38015250 | Msa0207310:CDS |
| TCTCTTCCATTGTCACTGAC+TGG | 0.377083 | 2_1:-38017654 | None:intergenic |
| CACGCTCTCCACCCAAGAAC+GGG | 0.377947 | 2_1:+38017531 | Msa0207310:CDS |
| CAAGTCCGAGCCGTGATGTC+AGG | 0.383176 | 2_1:+38017609 | Msa0207310:CDS |
| GAAGATCTTCGTAGACCTTT+CGG | 0.389767 | 2_1:+38015367 | Msa0207310:CDS |
| AGCAGAAGAGGCGGCGGAGG+AGG | 0.392165 | 2_1:+38015247 | Msa0207310:CDS |
| CTTCTCACATCCCCGTTCTT+GGG | 0.393169 | 2_1:-38017542 | None:intergenic |
| AAAGGTCTACGAAGATCTTC+AGG | 0.400296 | 2_1:-38015364 | None:intergenic |
| ATAATTCTACTAAATCTAGA+TGG | 0.405851 | 2_1:-38017829 | None:intergenic |
| CTGTATCACCTGAGGATAGA+AGG | 0.408964 | 2_1:+38017465 | Msa0207310:CDS |
| ACCAAGCATCTATTGTCTAA+TGG | 0.413297 | 2_1:-38017678 | None:intergenic |
| AGGTGGAGACCGGGAATAGC+GGG | 0.413550 | 2_1:-38017041 | None:intergenic |
| ATCTGTGACGAGGTGGAGAC+CGG | 0.419316 | 2_1:-38017051 | None:intergenic |
| TACAGCAGAAGAGGCGGCGG+AGG | 0.422786 | 2_1:+38015244 | Msa0207310:CDS |
| CTCTCGACTGAGCCTTTCAC+TGG | 0.429082 | 2_1:-38017578 | None:intergenic |
| GGGAGATAAATATCCTTAAG+AGG | 0.431391 | 2_1:-38015400 | None:intergenic |
| CTCTTCCATTGTCACTGACT+GGG | 0.434177 | 2_1:-38017653 | None:intergenic |
| CTGACATCACGGCTCGGACT+TGG | 0.436240 | 2_1:-38017608 | None:intergenic |
| CTTTCACTGGACTCTGACTA+CGG | 0.452235 | 2_1:-38017565 | None:intergenic |
| TTAGTAGAATTATATTGGTA+TGG | 0.452275 | 2_1:+38017839 | Msa0207310:three_prime_UTR |
| CTAAACGAAGGGAATATTCA+AGG | 0.464257 | 2_1:+38017113 | Msa0207310:CDS |
| CTGTAACGCGGTGGTGGTGA+TGG | 0.480658 | 2_1:-38015226 | None:intergenic |
| ACCATTAGACAATAGATGCT+TGG | 0.482289 | 2_1:+38017677 | Msa0207310:three_prime_UTR |
| TGGAGCCAAAATAACTCCTT+CGG | 0.492312 | 2_1:+38017906 | Msa0207310:three_prime_UTR |
| CTCCCCAAAGATTATTACAC+TGG | 0.494564 | 2_1:+38015418 | Msa0207310:CDS |
| GGTAGGTAGATCGCTTTGAC+GGG | 0.497430 | 2_1:-38015305 | None:intergenic |
| GCGTAACGCCGACGAGGACT+TGG | 0.501795 | 2_1:-38015280 | None:intergenic |
| TCTCTGACCCTCATCTCAGT+TGG | 0.506671 | 2_1:-38015992 | None:intergenic |
| TTCCCTTCGTTTAGGAGGAG+GGG | 0.509465 | 2_1:-38017104 | None:intergenic |
| CTTCTGCTGTAACGCGGTGG+TGG | 0.512560 | 2_1:-38015232 | None:intergenic |
| TGGTAGGTAGATCGCTTTGA+CGG | 0.523524 | 2_1:-38015306 | None:intergenic |
| ATGGTCAAGTTCTTCTTGGT+AGG | 0.524497 | 2_1:+38015930 | Msa0207310:CDS |
| TATTCCCTTCGTTTAGGAGG+AGG | 0.525431 | 2_1:-38017106 | None:intergenic |
| TGGTCAAGTTCTTCTTGGTA+GGG | 0.533607 | 2_1:+38015931 | Msa0207310:CDS |
| CGACTGTGCCTTCTATCCTC+AGG | 0.535468 | 2_1:-38017473 | None:intergenic |
| CTCACATCCCCGTTCTTGGG+TGG | 0.544494 | 2_1:-38017539 | None:intergenic |
| ATTCCCTTCGTTTAGGAGGA+GGG | 0.548091 | 2_1:-38017105 | None:intergenic |
| TCTGTGACGAGGTGGAGACC+GGG | 0.551287 | 2_1:-38017050 | None:intergenic |
| GATAGAAGGCACAGTCGAGA+AGG | 0.551688 | 2_1:+38017479 | Msa0207310:CDS |
| CCACCGCGTTACAGCAGAAG+AGG | 0.552873 | 2_1:+38015235 | Msa0207310:CDS |
| TTCGCATCAGCAGCATCCGC+AGG | 0.554382 | 2_1:-38015896 | None:intergenic |
| AAGTCCGAGCCGTGATGTCA+GGG | 0.561984 | 2_1:+38017610 | Msa0207310:CDS |
| GAGGTGGAGACCGGGAATAG+CGG | 0.564550 | 2_1:-38017042 | None:intergenic |
| GAATATTCCCTTCGTTTAGG+AGG | 0.564905 | 2_1:-38017109 | None:intergenic |
| CGTAGTCAGAGTCCAGTGAA+AGG | 0.572092 | 2_1:+38017566 | Msa0207310:CDS |
| GGTCTCCCAGTCAGTGACAA+TGG | 0.573445 | 2_1:+38017648 | Msa0207310:exon |
| TCACGCTCTCCACCCAAGAA+CGG | 0.579197 | 2_1:+38017530 | Msa0207310:CDS |
| TGCTGATGCGAAATATCATA+TGG | 0.579685 | 2_1:+38015907 | Msa0207310:CDS |
| GATCTTCAGGTCTACAGTCA+TGG | 0.581643 | 2_1:-38015351 | None:intergenic |
| GAAAGAAGCCAACTGAGATG+AGG | 0.582129 | 2_1:+38015984 | Msa0207310:CDS |
| TCAGGGAAGCATCCCGCAGT+AGG | 0.587173 | 2_1:+38017627 | Msa0207310:CDS |
| GCTTCCCTGACATCACGGCT+CGG | 0.592080 | 2_1:-38017614 | None:intergenic |
| TTCCCCTCCTCCTAAACGAA+GGG | 0.597370 | 2_1:+38017102 | Msa0207310:CDS |
| AAAGAAGCCAACTGAGATGA+GGG | 0.598374 | 2_1:+38015985 | Msa0207310:CDS |
| AAGGTTGCGAACAAGTAGAC+TGG | 0.604698 | 2_1:-38015326 | None:intergenic |
| CGGGGTGAACGAGAATAACG+TGG | 0.606363 | 2_1:-38017022 | None:intergenic |
| GTTTATGTTTCAGTAGCGGT+CGG | 0.608429 | 2_1:+38016975 | Msa0207310:intron |
| TCCCCAAAGATTATTACACT+GGG | 0.616184 | 2_1:+38015419 | Msa0207310:CDS |
| TTGTAGATCTGTATCACCTG+AGG | 0.616753 | 2_1:+38017457 | Msa0207310:intron |
| TATTCAATTTGTGGATCCTG+CGG | 0.619040 | 2_1:+38015880 | Msa0207310:CDS |
| CAAAGCAAAGGATCACTCAC+CGG | 0.621615 | 2_1:+38015167 | Msa0207310:five_prime_UTR |
| CCTCTTCTGCTGTAACGCGG+TGG | 0.622436 | 2_1:-38015235 | None:intergenic |
| AGATGAGGGTCAGAGAGAGA+AGG | 0.623453 | 2_1:+38015999 | Msa0207310:CDS |
| ATTCCCCTCCTCCTAAACGA+AGG | 0.624660 | 2_1:+38017101 | Msa0207310:CDS |
| CGTTGTCATCTGAAGATGAG+AGG | 0.624703 | 2_1:+38015190 | Msa0207310:exon |
| CGTTACAGCAGAAGAGGCGG+CGG | 0.624756 | 2_1:+38015241 | Msa0207310:CDS |
| GGGATGCTTCCCTGACATCA+CGG | 0.627142 | 2_1:-38017619 | None:intergenic |
| CAGGTCTACAGTCATGGCGA+AGG | 0.629297 | 2_1:-38015345 | None:intergenic |
| CCGCCTCTTCTGCTGTAACG+CGG | 0.629314 | 2_1:-38015238 | None:intergenic |
| ACCCAGTGTAATAATCTTTG+GGG | 0.629916 | 2_1:-38015420 | None:intergenic |
| GGTGGAGACCGGGAATAGCG+GGG | 0.633611 | 2_1:-38017040 | None:intergenic |
| GTCGGCATTCTGATCGAAGG+AGG | 0.634775 | 2_1:+38016993 | Msa0207310:CDS |
| GAGCGAGATCTGTGACGAGG+TGG | 0.637564 | 2_1:-38017058 | None:intergenic |
| TTGCGAACAAGTAGACTGGT+AGG | 0.639189 | 2_1:-38015322 | None:intergenic |
| GCGGTCGGCATTCTGATCGA+AGG | 0.640639 | 2_1:+38016990 | Msa0207310:CDS |
| GATGCGAAATATCATATGGA+TGG | 0.642241 | 2_1:+38015911 | Msa0207310:CDS |
| AGAGGACCAAAATGACCGAA+AGG | 0.644554 | 2_1:-38015382 | None:intergenic |
| CTGACTGGGAGACCTACTGC+GGG | 0.645256 | 2_1:-38017639 | None:intergenic |
| GATCACAACACAGCAGAGAG+AGG | 0.645731 | 2_1:+38017501 | Msa0207310:CDS |
| CCGCGTTACAGCAGAAGAGG+CGG | 0.649844 | 2_1:+38015238 | Msa0207310:CDS |
| GAAGAAGTCCAAGTCCTCGT+CGG | 0.658395 | 2_1:+38015272 | Msa0207310:CDS |
| ACGCTCTCCACCCAAGAACG+GGG | 0.664146 | 2_1:+38017532 | Msa0207310:CDS |
| CGTCACAGATCTCGCTCTCG+CGG | 0.666167 | 2_1:+38017064 | Msa0207310:CDS |
| GGGGTGAACGAGAATAACGT+GGG | 0.666188 | 2_1:-38017021 | None:intergenic |
| CGGGGAGCGTAACGCCGACG+AGG | 0.666656 | 2_1:-38015286 | None:intergenic |
| CGAGAGCGAGATCTGTGACG+AGG | 0.668387 | 2_1:-38017061 | None:intergenic |
| ACTGACTGGGAGACCTACTG+CGG | 0.671960 | 2_1:-38017640 | None:intergenic |
| GCTTTCTACAGGCAACCTCG+TGG | 0.675676 | 2_1:+38015848 | Msa0207310:intron |
| GTAGGTAGATCGCTTTGACG+GGG | 0.676212 | 2_1:-38015304 | None:intergenic |
| TCATCTTCAGATGACAACGC+CGG | 0.685078 | 2_1:-38015186 | None:intergenic |
| GGGTGAACGAGAATAACGTG+GGG | 0.732637 | 2_1:-38017020 | None:intergenic |
| GGTGAACGAGAATAACGTGG+GGG | 0.773739 | 2_1:-38017019 | None:intergenic |
| TGAATAAAACCAAAACCACG+AGG | 0.777977 | 2_1:-38015863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTTTTAATTATA+AGG | + | chr2_1:38017349-38017368 | Msa0207310:intron | 0.0% |
| !! | TTTGTATTTACTTAAAATAA+TGG | + | chr2_1:38017181-38017200 | Msa0207310:intron | 10.0% |
| !!! | AAAATTTAGGGTTATATTAT+TGG | + | chr2_1:38015512-38015531 | Msa0207310:intron | 15.0% |
| !!! | AAATTTAGGGTTATATTATT+GGG | + | chr2_1:38015513-38015532 | Msa0207310:intron | 15.0% |
| !! | TTTAATAATTGTGAGAAATT+AGG | + | chr2_1:38015547-38015566 | Msa0207310:intron | 15.0% |
| !!! | TTGATTTGATCTTATATTAT+TGG | + | chr2_1:38015711-38015730 | Msa0207310:intron | 15.0% |
| !! | TGATTTGATCTTATATTATT+GGG | + | chr2_1:38015712-38015731 | Msa0207310:intron | 15.0% |
| !! | GTAAATGATGATAATAAATA+AGG | - | chr2_1:38016848-38016867 | None:intergenic | 15.0% |
| !! | AATTAAAAAAAATAATCCTC+AGG | - | chr2_1:38017411-38017430 | None:intergenic | 15.0% |
| !! | TAGATTTAGTAGAATTATAT+TGG | + | chr2_1:38017834-38017853 | Msa0207310:three_prime_UTR | 15.0% |
| !! | ATTGAATGCTTTCAAAATTT+AGG | + | chr2_1:38015499-38015518 | Msa0207310:intron | 20.0% |
| !! | TTGAATGCTTTCAAAATTTA+GGG | + | chr2_1:38015500-38015519 | Msa0207310:intron | 20.0% |
| !!! | AATTTAGGGTTATATTATTG+GGG | + | chr2_1:38015514-38015533 | Msa0207310:intron | 20.0% |
| !!! | TTTTGGTTTTATTCAATTTG+TGG | + | chr2_1:38015871-38015890 | Msa0207310:CDS | 20.0% |
| !! | TGACTTTGAATGAATTAATA+TGG | + | chr2_1:38016060-38016079 | Msa0207310:intron | 20.0% |
| !! | GACTTTGAATGAATTAATAT+GGG | + | chr2_1:38016061-38016080 | Msa0207310:intron | 20.0% |
| !! | ATTATTGTTGAAATTCAAAG+TGG | - | chr2_1:38016171-38016190 | None:intergenic | 20.0% |
| !! | GATTGTTTATATGCAAATAA+GGG | - | chr2_1:38016608-38016627 | None:intergenic | 20.0% |
| !! | AACAACAATCATTTAAACTT+TGG | - | chr2_1:38016823-38016842 | None:intergenic | 20.0% |
| !! | AACAGTATACTTATAAGTAT+TGG | - | chr2_1:38016870-38016889 | None:intergenic | 20.0% |
| !! | AATTAAAAATGTATTAGTGC+TGG | + | chr2_1:38017774-38017793 | Msa0207310:three_prime_UTR | 20.0% |
| !! | ATAATTCTACTAAATCTAGA+TGG | - | chr2_1:38017832-38017851 | None:intergenic | 20.0% |
| !! | TTAGTAGAATTATATTGGTA+TGG | + | chr2_1:38017839-38017858 | Msa0207310:three_prime_UTR | 20.0% |
| ! | GGAGAAAGAAAAGAAAAAAT+TGG | + | chr2_1:38015141-38015160 | Msa0207310:five_prime_UTR | 25.0% |
| !!! | GAAAGCATTCAATGAAAATT+CGG | - | chr2_1:38015492-38015511 | None:intergenic | 25.0% |
| ! | TTCATCTTAATTTCACACAA+AGG | + | chr2_1:38015665-38015684 | Msa0207310:intron | 25.0% |
| ! | AATTGAAAAAGAAACGAAGA+GGG | - | chr2_1:38016033-38016052 | None:intergenic | 25.0% |
| ! | AAATTGAAAAAGAAACGAAG+AGG | - | chr2_1:38016034-38016053 | None:intergenic | 25.0% |
| !!! | CTTCGTTTCTTTTTCAATTT+TGG | + | chr2_1:38016034-38016053 | Msa0207310:intron | 25.0% |
| !!! | GGATTATAAGATTAGTTTAG+TGG | + | chr2_1:38016127-38016146 | Msa0207310:intron | 25.0% |
| ! | GAATTTCAACAATAATTGTG+TGG | + | chr2_1:38016175-38016194 | Msa0207310:intron | 25.0% |
| !! | TGTCTTTTATTGCGTTATAA+TGG | + | chr2_1:38016254-38016273 | Msa0207310:intron | 25.0% |
| ! | ATAGATTGGTAGATTTCATT+GGG | - | chr2_1:38016397-38016416 | None:intergenic | 25.0% |
| ! | AATAGATTGGTAGATTTCAT+TGG | - | chr2_1:38016398-38016417 | None:intergenic | 25.0% |
| ! | CTGTTTATATGCAAATAGAT+TGG | - | chr2_1:38016411-38016430 | None:intergenic | 25.0% |
| ! | ATCTATTTGCATATAAACAG+AGG | + | chr2_1:38016411-38016430 | Msa0207310:intron | 25.0% |
| ! | TCTATTTGCATATAAACAGA+GGG | + | chr2_1:38016412-38016431 | Msa0207310:intron | 25.0% |
| ! | GGATTGTTTATATGCAAATA+AGG | - | chr2_1:38016609-38016628 | None:intergenic | 25.0% |
| ! | ACATTTCAAACAACAAATTC+AGG | - | chr2_1:38016682-38016701 | None:intergenic | 25.0% |
| !! | TGTTGTTTGAAATGTAATGA+AGG | + | chr2_1:38016687-38016706 | Msa0207310:intron | 25.0% |
| ! | AATTTACTTGCAGTAATCAA+TGG | - | chr2_1:38016735-38016754 | None:intergenic | 25.0% |
| ! | TAATGTTTATGTTTCAGTAG+CGG | + | chr2_1:38016971-38016990 | Msa0207310:intron | 25.0% |
| ! | AATTATTATTAAGTGACCAC+TGG | - | chr2_1:38017145-38017164 | None:intergenic | 25.0% |
| ! | TATAAATGTTTAGAAAGAGC+TGG | + | chr2_1:38017206-38017225 | Msa0207310:intron | 25.0% |
| !! | TATATTGGTATGGATTTTTC+TGG | + | chr2_1:38017849-38017868 | Msa0207310:three_prime_UTR | 25.0% |
| !! | TTTTTGTCTTGTCTTCATTA+TGG | + | chr2_1:38017886-38017905 | Msa0207310:three_prime_UTR | 25.0% |
| AAAAATTGGAAGCAAAGCAA+AGG | + | chr2_1:38015155-38015174 | Msa0207310:five_prime_UTR | 30.0% | |
| ATGAAATCTTCTTCAAGACT+TGG | - | chr2_1:38015650-38015669 | None:intergenic | 30.0% | |
| !! | TAAAATTGGTGCTAAGAAGT+TGG | - | chr2_1:38015747-38015766 | None:intergenic | 30.0% |
| ! | CAATTTTACTCACTGCATAT+GGG | + | chr2_1:38015759-38015778 | Msa0207310:intron | 30.0% |
| !!! | TGTGTTAATGCTTTTTTCGT+TGG | + | chr2_1:38015808-38015827 | Msa0207310:intron | 30.0% |
| !!! | GTGTTAATGCTTTTTTCGTT+GGG | + | chr2_1:38015809-38015828 | Msa0207310:intron | 30.0% |
| !! | GTTGGGTTTTCTGTTTTATT+CGG | + | chr2_1:38015826-38015845 | Msa0207310:intron | 30.0% |
| TAATATGGGATACTTGCATT+TGG | + | chr2_1:38016075-38016094 | Msa0207310:intron | 30.0% | |
| CTATGTGTATTTACAGGAAA+CGG | - | chr2_1:38016103-38016122 | None:intergenic | 30.0% | |
| AATTGTGTGGTATACTAGTA+AGG | + | chr2_1:38016188-38016207 | Msa0207310:intron | 30.0% | |
| TTATTGCGTTATAATGGTAC+AGG | + | chr2_1:38016260-38016279 | Msa0207310:intron | 30.0% | |
| TAGATTGGTAGATTTCATTG+GGG | - | chr2_1:38016396-38016415 | None:intergenic | 30.0% | |
| CTATTTGCATATAAACAGAG+GGG | + | chr2_1:38016413-38016432 | Msa0207310:intron | 30.0% | |
| TATAATAACATCGATGAGCT+CGG | + | chr2_1:38016656-38016675 | Msa0207310:intron | 30.0% | |
| GCTAAATTTCACTGGAAAAA+AGG | - | chr2_1:38016713-38016732 | None:intergenic | 30.0% | |
| AATCAATGGCTAAATTTCAC+TGG | - | chr2_1:38016721-38016740 | None:intergenic | 30.0% | |
| TACTGCAAGTAAATTACACT+AGG | + | chr2_1:38016740-38016759 | Msa0207310:intron | 30.0% | |
| GATTATGTATGTGTTTGTTC+CGG | + | chr2_1:38017298-38017317 | Msa0207310:intron | 30.0% | |
| TGAATGTTCAGCAAAAACAA+TGG | + | chr2_1:38017706-38017725 | Msa0207310:three_prime_UTR | 30.0% | |
| ! | TTCAGCAAAAACAATGGATT+TGG | + | chr2_1:38017712-38017731 | Msa0207310:three_prime_UTR | 30.0% |
| GGGAGATAAATATCCTTAAG+AGG | - | chr2_1:38015403-38015422 | None:intergenic | 35.0% | |
| TCCCCAAAGATTATTACACT+GGG | + | chr2_1:38015419-38015438 | Msa0207310:CDS | 35.0% | |
| ACCCAGTGTAATAATCTTTG+GGG | - | chr2_1:38015423-38015442 | None:intergenic | 35.0% | |
| GACCCAGTGTAATAATCTTT+GGG | - | chr2_1:38015424-38015443 | None:intergenic | 35.0% | |
| TGACCCAGTGTAATAATCTT+TGG | - | chr2_1:38015425-38015444 | None:intergenic | 35.0% | |
| CCATATGCAGTGAGTAAAAT+TGG | - | chr2_1:38015761-38015780 | None:intergenic | 35.0% | |
| ! | CCAATTTTACTCACTGCATA+TGG | + | chr2_1:38015758-38015777 | Msa0207310:intron | 35.0% |
| !! | TGTTTTATTCGGCTTTCTAC+AGG | + | chr2_1:38015837-38015856 | Msa0207310:intron | 35.0% |
| TGAATAAAACCAAAACCACG+AGG | - | chr2_1:38015866-38015885 | None:intergenic | 35.0% | |
| TATTCAATTTGTGGATCCTG+CGG | + | chr2_1:38015880-38015899 | Msa0207310:CDS | 35.0% | |
| TGCTGATGCGAAATATCATA+TGG | + | chr2_1:38015907-38015926 | Msa0207310:CDS | 35.0% | |
| GATGCGAAATATCATATGGA+TGG | + | chr2_1:38015911-38015930 | Msa0207310:CDS | 35.0% | |
| !!! | GATAACTGTTGTTTTTGCTG+AGG | + | chr2_1:38015955-38015974 | Msa0207310:CDS | 35.0% |
| CCTAGACTATGTGTATTTAC+AGG | - | chr2_1:38016109-38016128 | None:intergenic | 35.0% | |
| CCTGTAAATACACATAGTCT+AGG | + | chr2_1:38016106-38016125 | Msa0207310:intron | 35.0% | |
| ! | ATACTAGTAAGGCCCTATTT+TGG | + | chr2_1:38016199-38016218 | Msa0207310:intron | 35.0% |
| TATAAACAGCCTGAAATCCA+AGG | - | chr2_1:38016297-38016316 | None:intergenic | 35.0% | |
| TTAATAAGTTCCGTGATCGA+TGG | - | chr2_1:38016333-38016352 | None:intergenic | 35.0% | |
| AGATTGGTAGATTTCATTGG+GGG | - | chr2_1:38016395-38016414 | None:intergenic | 35.0% | |
| !!! | TTTCCCTGTTTTTACACAAG+AGG | - | chr2_1:38016509-38016528 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGAA+AGG | + | chr2_1:38016508-38016527 | Msa0207310:intron | 35.0% | |
| TCATAGATTCAAACCGAGAT+CGG | - | chr2_1:38016634-38016653 | None:intergenic | 35.0% | |
| AATTACACTAGGCCAGTTTA+TGG | + | chr2_1:38016751-38016770 | Msa0207310:intron | 35.0% | |
| ATTACACTAGGCCAGTTTAT+GGG | + | chr2_1:38016752-38016771 | Msa0207310:intron | 35.0% | |
| ACGAGACATTAAAATGTCCT+GGG | + | chr2_1:38016791-38016810 | Msa0207310:intron | 35.0% | |
| TTAAACTTTGGATGAAACCC+AGG | - | chr2_1:38016811-38016830 | None:intergenic | 35.0% | |
| CTTGAATATTCCCTTCGTTT+AGG | - | chr2_1:38017115-38017134 | None:intergenic | 35.0% | |
| CTAAACGAAGGGAATATTCA+AGG | + | chr2_1:38017113-38017132 | Msa0207310:CDS | 35.0% | |
| GAAGGGAATATTCAAGGTAT+TGG | + | chr2_1:38017119-38017138 | Msa0207310:intron | 35.0% | |
| ! | ACATACTGTTGGTTGTAGTT+TGG | + | chr2_1:38017235-38017254 | Msa0207310:intron | 35.0% |
| ! | CATACTGTTGGTTGTAGTTT+GGG | + | chr2_1:38017236-38017255 | Msa0207310:intron | 35.0% |
| GTGATACAGATCTACAAAAC+AGG | - | chr2_1:38017389-38017408 | None:intergenic | 35.0% | |
| GTGATACAGATCTACAAAAC+AGG | - | chr2_1:38017389-38017408 | None:intergenic | 35.0% | |
| ACCATTAGACAATAGATGCT+TGG | + | chr2_1:38017677-38017696 | Msa0207310:three_prime_UTR | 35.0% | |
| ACCAAGCATCTATTGTCTAA+TGG | - | chr2_1:38017681-38017700 | None:intergenic | 35.0% | |
| !! | AAAAATGTATTAGTGCTGGC+TGG | + | chr2_1:38017778-38017797 | Msa0207310:three_prime_UTR | 35.0% |
| AAAGGTCTACGAAGATCTTC+AGG | - | chr2_1:38015367-38015386 | None:intergenic | 40.0% | |
| GAAGATCTTCGTAGACCTTT+CGG | + | chr2_1:38015367-38015386 | Msa0207310:CDS | 40.0% | |
| CTCCCCAAAGATTATTACAC+TGG | + | chr2_1:38015418-38015437 | Msa0207310:CDS | 40.0% | |
| ! | TATGGGTCTCGTTTCGATTT+TGG | + | chr2_1:38015776-38015795 | Msa0207310:intron | 40.0% |
| ATGGATGGTCAAGTTCTTCT+TGG | + | chr2_1:38015926-38015945 | Msa0207310:CDS | 40.0% | |
| ATGGTCAAGTTCTTCTTGGT+AGG | + | chr2_1:38015930-38015949 | Msa0207310:CDS | 40.0% | |
| TGGTCAAGTTCTTCTTGGTA+GGG | + | chr2_1:38015931-38015950 | Msa0207310:CDS | 40.0% | |
| AAAGAAGCCAACTGAGATGA+GGG | + | chr2_1:38015985-38016004 | Msa0207310:CDS | 40.0% | |
| TGCGTTATAATGGTACAGGT+AGG | + | chr2_1:38016264-38016283 | Msa0207310:intron | 40.0% | |
| GCGTTATAATGGTACAGGTA+GGG | + | chr2_1:38016265-38016284 | Msa0207310:intron | 40.0% | |
| ACTTAAACCACCATCGATCA+CGG | + | chr2_1:38016320-38016339 | Msa0207310:intron | 40.0% | |
| GATTGGTAGATTTCATTGGG+GGG | - | chr2_1:38016394-38016413 | None:intergenic | 40.0% | |
| TATAAACAGAGGGGTAACCT+TGG | + | chr2_1:38016422-38016441 | Msa0207310:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | + | chr2_1:38016458-38016477 | Msa0207310:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr2_1:38016502-38016521 | Msa0207310:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr2_1:38016503-38016522 | Msa0207310:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr2_1:38016534-38016553 | Msa0207310:intron | 40.0% | |
| ATATGCAAATAAGGGCAACC+CGG | - | chr2_1:38016600-38016619 | None:intergenic | 40.0% | |
| CAATGACAAGACCCATAAAC+TGG | - | chr2_1:38016766-38016785 | None:intergenic | 40.0% | |
| GACGAGACATTAAAATGTCC+TGG | + | chr2_1:38016790-38016809 | Msa0207310:intron | 40.0% | |
| TTCTGCTTGTTTCAGCTAAG+AGG | + | chr2_1:38016921-38016940 | Msa0207310:intron | 40.0% | |
| GTTTATGTTTCAGTAGCGGT+CGG | + | chr2_1:38016975-38016994 | Msa0207310:intron | 40.0% | |
| GAATATTCCCTTCGTTTAGG+AGG | - | chr2_1:38017112-38017131 | None:intergenic | 40.0% | |
| !! | ATATTCAAGGTATTGGCCAG+TGG | + | chr2_1:38017126-38017145 | Msa0207310:intron | 40.0% |
| TTGTAGATCTGTATCACCTG+AGG | + | chr2_1:38017392-38017411 | Msa0207310:intron | 40.0% | |
| TTGTAGATCTGTATCACCTG+AGG | + | chr2_1:38017392-38017411 | Msa0207310:intron | 40.0% | |
| TGGAGCCAAAATAACTCCTT+CGG | + | chr2_1:38017906-38017925 | Msa0207310:three_prime_UTR | 40.0% | |
| ! | TGAGACCGAAGGAGTTATTT+TGG | - | chr2_1:38017914-38017933 | None:intergenic | 40.0% |
| AAAAAAGGTCATGAGACCGA+AGG | - | chr2_1:38017925-38017944 | None:intergenic | 40.0% | |
| CAAAGCAAAGGATCACTCAC+CGG | + | chr2_1:38015167-38015186 | Msa0207310:five_prime_UTR | 45.0% | |
| TCATCTTCAGATGACAACGC+CGG | - | chr2_1:38015189-38015208 | None:intergenic | 45.0% | |
| CGTTGTCATCTGAAGATGAG+AGG | + | chr2_1:38015190-38015209 | Msa0207310:exon | 45.0% | |
| TGGTAGGTAGATCGCTTTGA+CGG | - | chr2_1:38015309-38015328 | None:intergenic | 45.0% | |
| TTGCGAACAAGTAGACTGGT+AGG | - | chr2_1:38015325-38015344 | None:intergenic | 45.0% | |
| AAGGTTGCGAACAAGTAGAC+TGG | - | chr2_1:38015329-38015348 | None:intergenic | 45.0% | |
| GATCTTCAGGTCTACAGTCA+TGG | - | chr2_1:38015354-38015373 | None:intergenic | 45.0% | |
| ! | CGTAGACCTTTCGGTCATTT+TGG | + | chr2_1:38015376-38015395 | Msa0207310:CDS | 45.0% |
| AGAGGACCAAAATGACCGAA+AGG | - | chr2_1:38015385-38015404 | None:intergenic | 45.0% | |
| !! | CGGTCATTTTGGTCCTCTTA+AGG | + | chr2_1:38015387-38015406 | Msa0207310:CDS | 45.0% |
| GAAAGAAGCCAACTGAGATG+AGG | + | chr2_1:38015984-38016003 | Msa0207310:CDS | 45.0% | |
| !!! | TAAGGCCCTATTTTGGTCCT+CGG | + | chr2_1:38016206-38016225 | Msa0207310:intron | 45.0% |
| CTCTTCCGAGGACCAAAATA+GGG | - | chr2_1:38016214-38016233 | None:intergenic | 45.0% | |
| TCTCTTCCGAGGACCAAAAT+AGG | - | chr2_1:38016215-38016234 | None:intergenic | 45.0% | |
| !! | ATTTTGGTCCTCGGAAGAGA+TGG | + | chr2_1:38016215-38016234 | Msa0207310:intron | 45.0% |
| ! | TTTTGGTCCTCGGAAGAGAT+GGG | + | chr2_1:38016216-38016235 | Msa0207310:intron | 45.0% |
| TACAGGTAGGGTTCAAACCT+TGG | + | chr2_1:38016277-38016296 | Msa0207310:intron | 45.0% | |
| GGGTTCAAACCTTGGATTTC+AGG | + | chr2_1:38016285-38016304 | Msa0207310:intron | 45.0% | |
| ATAAGTTCCGTGATCGATGG+TGG | - | chr2_1:38016330-38016349 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | + | chr2_1:38016464-38016483 | Msa0207310:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | + | chr2_1:38016465-38016484 | Msa0207310:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr2_1:38016498-38016517 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | + | chr2_1:38016530-38016549 | Msa0207310:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr2_1:38016533-38016552 | Msa0207310:intron | 45.0% | |
| ATAAACAATCCCGCCGATCT+CGG | + | chr2_1:38016618-38016637 | Msa0207310:intron | 45.0% | |
| TAGATTCAAACCGAGATCGG+CGG | - | chr2_1:38016631-38016650 | None:intergenic | 45.0% | |
| CTTGTTTCAGCTAAGAGGTG+AGG | + | chr2_1:38016926-38016945 | Msa0207310:intron | 45.0% | |
| ATTCCCTTCGTTTAGGAGGA+GGG | - | chr2_1:38017108-38017127 | None:intergenic | 45.0% | |
| TATTCCCTTCGTTTAGGAGG+AGG | - | chr2_1:38017109-38017128 | None:intergenic | 45.0% | |
| CTGTATCACCTGAGGATAGA+AGG | + | chr2_1:38017465-38017484 | Msa0207310:CDS | 45.0% | |
| CTTTCACTGGACTCTGACTA+CGG | - | chr2_1:38017568-38017587 | None:intergenic | 45.0% | |
| ! | CTCTTCCATTGTCACTGACT+GGG | - | chr2_1:38017656-38017675 | None:intergenic | 45.0% |
| TCTCTTCCATTGTCACTGAC+TGG | - | chr2_1:38017657-38017676 | None:intergenic | 45.0% | |
| !!! | GATTATTTTTTTTAATTATA+AGG | + | chr2_1:38017414-38017433 | Msa0207310:intron | 5.0% |
| GAAGAAGTCCAAGTCCTCGT+CGG | + | chr2_1:38015272-38015291 | Msa0207310:CDS | 50.0% | |
| GTAGGTAGATCGCTTTGACG+GGG | - | chr2_1:38015307-38015326 | None:intergenic | 50.0% | |
| GGTAGGTAGATCGCTTTGAC+GGG | - | chr2_1:38015308-38015327 | None:intergenic | 50.0% | |
| ! | TACAGGCAACCTCGTGGTTT+TGG | + | chr2_1:38015854-38015873 | Msa0207310:intron | 50.0% |
| TCTCTGACCCTCATCTCAGT+TGG | - | chr2_1:38015995-38016014 | None:intergenic | 50.0% | |
| AGATGAGGGTCAGAGAGAGA+AGG | + | chr2_1:38015999-38016018 | Msa0207310:CDS | 50.0% | |
| AGTCAATCCCATCTCTTCCG+AGG | - | chr2_1:38016226-38016245 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr2_1:38016442-38016461 | None:intergenic | 50.0% | |
| AGATTCAAACCGAGATCGGC+GGG | - | chr2_1:38016630-38016649 | None:intergenic | 50.0% | |
| GGTGAACGAGAATAACGTGG+GGG | - | chr2_1:38017022-38017041 | None:intergenic | 50.0% | |
| GGGTGAACGAGAATAACGTG+GGG | - | chr2_1:38017023-38017042 | None:intergenic | 50.0% | |
| GGGGTGAACGAGAATAACGT+GGG | - | chr2_1:38017024-38017043 | None:intergenic | 50.0% | |
| ATTCCCCTCCTCCTAAACGA+AGG | + | chr2_1:38017101-38017120 | Msa0207310:CDS | 50.0% | |
| TTCCCCTCCTCCTAAACGAA+GGG | + | chr2_1:38017102-38017121 | Msa0207310:CDS | 50.0% | |
| TTCCCTTCGTTTAGGAGGAG+GGG | - | chr2_1:38017107-38017126 | None:intergenic | 50.0% | |
| !! | GCTGGACTAGCACATACTGT+TGG | + | chr2_1:38017224-38017243 | Msa0207310:intron | 50.0% |
| TTGTTCCGGTCAAAAGACGC+TGG | + | chr2_1:38017312-38017331 | Msa0207310:intron | 50.0% | |
| ! | GATAGAAGGCACAGTCGAGA+AGG | + | chr2_1:38017479-38017498 | Msa0207310:CDS | 50.0% |
| GATCACAACACAGCAGAGAG+AGG | + | chr2_1:38017501-38017520 | Msa0207310:CDS | 50.0% | |
| CTTCTCACATCCCCGTTCTT+GGG | - | chr2_1:38017545-38017564 | None:intergenic | 50.0% | |
| CGTAGTCAGAGTCCAGTGAA+AGG | + | chr2_1:38017566-38017585 | Msa0207310:CDS | 50.0% | |
| CAGGTCTACAGTCATGGCGA+AGG | - | chr2_1:38015348-38015367 | None:intergenic | 55.0% | |
| GCTTTCTACAGGCAACCTCG+TGG | + | chr2_1:38015848-38015867 | Msa0207310:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr2_1:38016477-38016496 | Msa0207310:intron | 55.0% | |
| GTCGGCATTCTGATCGAAGG+AGG | + | chr2_1:38016993-38017012 | Msa0207310:CDS | 55.0% | |
| CGGGGTGAACGAGAATAACG+TGG | - | chr2_1:38017025-38017044 | None:intergenic | 55.0% | |
| ATCTGTGACGAGGTGGAGAC+CGG | - | chr2_1:38017054-38017073 | None:intergenic | 55.0% | |
| TTCCGGTCAAAAGACGCTGG+TGG | + | chr2_1:38017315-38017334 | Msa0207310:intron | 55.0% | |
| ! | CTCCACCAGCGTCTTTTGAC+CGG | - | chr2_1:38017320-38017339 | None:intergenic | 55.0% |
| CGACTGTGCCTTCTATCCTC+AGG | - | chr2_1:38017476-38017495 | None:intergenic | 55.0% | |
| TCACGCTCTCCACCCAAGAA+CGG | + | chr2_1:38017530-38017549 | Msa0207310:CDS | 55.0% | |
| GCTTCTCACATCCCCGTTCT+TGG | - | chr2_1:38017546-38017565 | None:intergenic | 55.0% | |
| CTCTCGACTGAGCCTTTCAC+TGG | - | chr2_1:38017581-38017600 | None:intergenic | 55.0% | |
| AAGTCCGAGCCGTGATGTCA+GGG | + | chr2_1:38017610-38017629 | Msa0207310:CDS | 55.0% | |
| GGGATGCTTCCCTGACATCA+CGG | - | chr2_1:38017622-38017641 | None:intergenic | 55.0% | |
| ACTGACTGGGAGACCTACTG+CGG | - | chr2_1:38017643-38017662 | None:intergenic | 55.0% | |
| GGTCTCCCAGTCAGTGACAA+TGG | + | chr2_1:38017648-38017667 | Msa0207310:exon | 55.0% | |
| ! | CTGTAACGCGGTGGTGGTGA+TGG | - | chr2_1:38015229-38015248 | None:intergenic | 60.0% |
| CTTCTGCTGTAACGCGGTGG+TGG | - | chr2_1:38015235-38015254 | None:intergenic | 60.0% | |
| CCTCTTCTGCTGTAACGCGG+TGG | - | chr2_1:38015238-38015257 | None:intergenic | 60.0% | |
| CCACCGCGTTACAGCAGAAG+AGG | + | chr2_1:38015235-38015254 | Msa0207310:CDS | 60.0% | |
| CCGCCTCTTCTGCTGTAACG+CGG | - | chr2_1:38015241-38015260 | None:intergenic | 60.0% | |
| CCGCGTTACAGCAGAAGAGG+CGG | + | chr2_1:38015238-38015257 | Msa0207310:CDS | 60.0% | |
| CGTTACAGCAGAAGAGGCGG+CGG | + | chr2_1:38015241-38015260 | Msa0207310:CDS | 60.0% | |
| TTCGCATCAGCAGCATCCGC+AGG | - | chr2_1:38015899-38015918 | None:intergenic | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr2_1:38016431-38016450 | Msa0207310:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr2_1:38016546-38016565 | Msa0207310:intron | 60.0% |
| CTGAAGCTCCCGCATACGCA+GGG | - | chr2_1:38016573-38016592 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | - | chr2_1:38016574-38016593 | None:intergenic | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr2_1:38016578-38016597 | Msa0207310:intron | 60.0% | |
| GCGGTCGGCATTCTGATCGA+AGG | + | chr2_1:38016990-38017009 | Msa0207310:CDS | 60.0% | |
| CTCGTTCACCCCGCTATTCC+CGG | + | chr2_1:38017032-38017051 | Msa0207310:CDS | 60.0% | |
| AGGTGGAGACCGGGAATAGC+GGG | - | chr2_1:38017044-38017063 | None:intergenic | 60.0% | |
| GAGGTGGAGACCGGGAATAG+CGG | - | chr2_1:38017045-38017064 | None:intergenic | 60.0% | |
| TCTGTGACGAGGTGGAGACC+GGG | - | chr2_1:38017053-38017072 | None:intergenic | 60.0% | |
| GAGCGAGATCTGTGACGAGG+TGG | - | chr2_1:38017061-38017080 | None:intergenic | 60.0% | |
| CGAGAGCGAGATCTGTGACG+AGG | - | chr2_1:38017064-38017083 | None:intergenic | 60.0% | |
| CGTCACAGATCTCGCTCTCG+CGG | + | chr2_1:38017064-38017083 | Msa0207310:CDS | 60.0% | |
| CACGCTCTCCACCCAAGAAC+GGG | + | chr2_1:38017531-38017550 | Msa0207310:CDS | 60.0% | |
| ACGCTCTCCACCCAAGAACG+GGG | + | chr2_1:38017532-38017551 | Msa0207310:CDS | 60.0% | |
| CTCACATCCCCGTTCTTGGG+TGG | - | chr2_1:38017542-38017561 | None:intergenic | 60.0% | |
| ! | CTGACATCACGGCTCGGACT+TGG | - | chr2_1:38017611-38017630 | None:intergenic | 60.0% |
| CAAGTCCGAGCCGTGATGTC+AGG | + | chr2_1:38017609-38017628 | Msa0207310:CDS | 60.0% | |
| GCTTCCCTGACATCACGGCT+CGG | - | chr2_1:38017617-38017636 | None:intergenic | 60.0% | |
| !! | TCAGGGAAGCATCCCGCAGT+AGG | + | chr2_1:38017627-38017646 | Msa0207310:CDS | 60.0% |
| CTGACTGGGAGACCTACTGC+GGG | - | chr2_1:38017642-38017661 | None:intergenic | 60.0% | |
| TACAGCAGAAGAGGCGGCGG+AGG | + | chr2_1:38015244-38015263 | Msa0207310:CDS | 65.0% | |
| GCGTAACGCCGACGAGGACT+TGG | - | chr2_1:38015283-38015302 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr2_1:38016548-38016567 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr2_1:38016561-38016580 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr2_1:38016562-38016581 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr2_1:38016561-38016580 | Msa0207310:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr2_1:38016562-38016581 | Msa0207310:intron | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr2_1:38016579-38016598 | Msa0207310:intron | 65.0% | |
| GGTGGAGACCGGGAATAGCG+GGG | - | chr2_1:38017043-38017062 | None:intergenic | 65.0% | |
| AGCAGAAGAGGCGGCGGAGG+AGG | + | chr2_1:38015247-38015266 | Msa0207310:CDS | 70.0% | |
| AGAAGAGGCGGCGGAGGAGG+AGG | + | chr2_1:38015250-38015269 | Msa0207310:CDS | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr2_1:38016563-38016582 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr2_1:38016567-38016586 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr2_1:38016568-38016587 | None:intergenic | 70.0% | |
| ! | CGGGGAGCGTAACGCCGACG+AGG | - | chr2_1:38015289-38015308 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 38015136 | 38017945 | 38015136 | ID=Msa0207310;Name=Msa0207310 |
| chr2_1 | mRNA | 38015136 | 38017945 | 38015136 | ID=Msa0207310-mRNA-1;Parent=Msa0207310;Name=Msa0207310-mRNA-1;_AED=0.11;_eAED=0.11;_QI=69|1|1|1|1|1|4|281|248 |
| chr2_1 | exon | 38015136 | 38015440 | 38015136 | ID=Msa0207310-mRNA-1:exon:12227;Parent=Msa0207310-mRNA-1 |
| chr2_1 | exon | 38015859 | 38016020 | 38015859 | ID=Msa0207310-mRNA-1:exon:12228;Parent=Msa0207310-mRNA-1 |
| chr2_1 | exon | 38016988 | 38017134 | 38016988 | ID=Msa0207310-mRNA-1:exon:12229;Parent=Msa0207310-mRNA-1 |
| chr2_1 | exon | 38017463 | 38017945 | 38017463 | ID=Msa0207310-mRNA-1:exon:12230;Parent=Msa0207310-mRNA-1 |
| chr2_1 | five_prime_UTR | 38015136 | 38015204 | 38015136 | ID=Msa0207310-mRNA-1:five_prime_utr;Parent=Msa0207310-mRNA-1 |
| chr2_1 | CDS | 38015205 | 38015440 | 38015205 | ID=Msa0207310-mRNA-1:cds;Parent=Msa0207310-mRNA-1 |
| chr2_1 | CDS | 38015859 | 38016020 | 38015859 | ID=Msa0207310-mRNA-1:cds;Parent=Msa0207310-mRNA-1 |
| chr2_1 | CDS | 38016988 | 38017134 | 38016988 | ID=Msa0207310-mRNA-1:cds;Parent=Msa0207310-mRNA-1 |
| chr2_1 | CDS | 38017463 | 38017664 | 38017463 | ID=Msa0207310-mRNA-1:cds;Parent=Msa0207310-mRNA-1 |
| chr2_1 | three_prime_UTR | 38017665 | 38017945 | 38017665 | ID=Msa0207310-mRNA-1:three_prime_utr;Parent=Msa0207310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
