Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221820 | XP_003597210.2 | 98.551 | 207 | 3 | 0 | 1 | 207 | 87 | 293 | 2.35e-143 | 411 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221820 | sp|Q8LEE9|FLA12_ARATH | 50.000 | 130 | 63 | 2 | 1 | 129 | 57 | 185 | 3.56e-35 | 127 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221820 | G7IRP5 | 98.551 | 207 | 3 | 0 | 1 | 207 | 87 | 293 | 1.12e-143 | 411 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0142380 | Msa0221820 | 0.884899 | 1.292948e-71 | -8.615850e-47 |
Msa0194000 | Msa0221820 | 0.867860 | 1.001972e-65 | -8.615850e-47 |
Msa0221820 | Msa0235870 | 0.855838 | 4.823447e-62 | -8.615850e-47 |
Msa0221820 | Msa0263440 | 0.954215 | 4.878036e-112 | -8.615850e-47 |
Msa0221820 | Msa0269380 | 0.874451 | 6.682737e-68 | -8.615850e-47 |
Msa0221820 | Msa0288900 | 0.838713 | 2.442417e-57 | -8.615850e-47 |
Msa0221820 | Msa0301030 | 0.929637 | 5.223818e-93 | -8.615850e-47 |
Msa0221820 | Msa0314220 | 0.848598 | 5.535867e-60 | -8.615850e-47 |
Msa0221820 | Msa0314330 | 0.810238 | 1.273310e-50 | -8.615850e-47 |
Msa0221820 | Msa0338580 | 0.968215 | 2.317576e-128 | -8.615850e-47 |
Msa0221820 | Msa0602110 | 0.820010 | 8.596591e-53 | -8.615850e-47 |
Msa0221820 | Msa0618600 | 0.831147 | 1.967828e-55 | -8.615850e-47 |
Msa0221820 | Msa0643240 | 0.842447 | 2.571284e-58 | -8.615850e-47 |
Msa0221820 | Msa0657380 | 0.887532 | 1.313430e-72 | -8.615850e-47 |
Msa0221820 | Msa0708510 | 0.884393 | 1.992367e-71 | -8.615850e-47 |
Msa0221820 | Msa0792190 | 0.872388 | 3.303597e-67 | -8.615850e-47 |
Msa0221820 | Msa1035290 | 0.833502 | 5.141414e-56 | -8.615850e-47 |
Msa0221820 | Msa1116460 | 0.805325 | 1.409976e-49 | -8.615850e-47 |
Msa0221820 | Msa1199250 | 0.852783 | 3.679860e-61 | -8.615850e-47 |
Msa0221820 | Msa1252480 | 0.815248 | 1.018880e-51 | -8.615850e-47 |
Msa0221820 | Msa1267350 | 0.870676 | 1.219061e-66 | -8.615850e-47 |
Msa0221820 | Msa1293220 | 0.866415 | 2.898823e-65 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221820 | MtrunA17_Chr2g0326411 | 98.551 | 207 | 3 | 0 | 1 | 207 | 87 | 293 | 2.16e-147 | 411 |
Msa0221820 | MtrunA17_Chr4g0029441 | 68.500 | 200 | 55 | 3 | 1 | 199 | 91 | 283 | 2.40e-86 | 256 |
Msa0221820 | MtrunA17_Chr4g0029501 | 67.327 | 202 | 58 | 3 | 1 | 200 | 91 | 286 | 1.01e-85 | 255 |
Msa0221820 | MtrunA17_Chr4g0026611 | 67.500 | 200 | 62 | 1 | 1 | 200 | 95 | 291 | 5.60e-82 | 245 |
Msa0221820 | MtrunA17_Chr2g0284411 | 53.571 | 196 | 79 | 3 | 1 | 195 | 86 | 270 | 1.00e-61 | 193 |
Msa0221820 | MtrunA17_Chr2g0284431 | 52.217 | 203 | 85 | 3 | 1 | 202 | 107 | 298 | 2.23e-61 | 193 |
Msa0221820 | MtrunA17_Chr2g0284451 | 46.635 | 208 | 100 | 3 | 1 | 202 | 89 | 291 | 2.67e-56 | 180 |
Msa0221820 | MtrunA17_Chr8g0379611 | 62.308 | 130 | 49 | 0 | 1 | 130 | 95 | 224 | 4.63e-53 | 172 |
Msa0221820 | MtrunA17_Chr2g0326421 | 50.877 | 171 | 84 | 0 | 1 | 171 | 87 | 257 | 8.06e-52 | 168 |
Msa0221820 | MtrunA17_Chr8g0379621 | 60.902 | 133 | 48 | 3 | 1 | 130 | 111 | 242 | 1.94e-48 | 160 |
Msa0221820 | MtrunA17_Chr8g0379631 | 60.902 | 133 | 48 | 3 | 1 | 130 | 111 | 242 | 1.94e-48 | 160 |
Msa0221820 | MtrunA17_Chr4g0029431 | 59.231 | 130 | 53 | 0 | 1 | 130 | 85 | 214 | 3.35e-48 | 159 |
Msa0221820 | MtrunA17_Chr4g0029331 | 50.314 | 159 | 63 | 2 | 1 | 159 | 80 | 222 | 4.81e-45 | 150 |
Msa0221820 | MtrunA17_Chr2g0326431 | 53.846 | 130 | 59 | 1 | 1 | 130 | 59 | 187 | 8.84e-45 | 149 |
Msa0221820 | MtrunA17_Chr7g0263981 | 46.875 | 128 | 66 | 2 | 1 | 127 | 58 | 184 | 5.01e-32 | 116 |
Msa0221820 | MtrunA17_Chr2g0325021 | 37.662 | 154 | 89 | 1 | 19 | 165 | 73 | 226 | 9.06e-25 | 97.4 |
Msa0221820 | MtrunA17_Chr7g0246041 | 37.037 | 135 | 85 | 0 | 21 | 155 | 217 | 351 | 4.37e-17 | 78.6 |
Msa0221820 | MtrunA17_Chr5g0448001 | 33.333 | 141 | 86 | 4 | 21 | 158 | 85 | 220 | 3.06e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221820 | AT5G60490.1 | 50.000 | 130 | 63 | 2 | 1 | 129 | 57 | 185 | 3.62e-36 | 127 |
Msa0221820 | AT5G03170.1 | 44.295 | 149 | 74 | 2 | 1 | 148 | 54 | 194 | 1.05e-35 | 126 |
Msa0221820 | AT5G44130.1 | 35.165 | 182 | 101 | 3 | 1 | 180 | 54 | 220 | 6.13e-25 | 98.2 |
Msa0221820 | AT2G20520.1 | 40.000 | 150 | 82 | 4 | 1 | 147 | 56 | 200 | 3.46e-22 | 90.9 |
Msa0221820 | AT1G03870.1 | 34.637 | 179 | 106 | 4 | 1 | 173 | 57 | 230 | 5.25e-22 | 90.5 |
Msa0221820 | AT3G46550.1 | 33.333 | 120 | 75 | 4 | 18 | 132 | 239 | 358 | 1.79e-11 | 62.8 |
Msa0221820 | AT3G60900.1 | 28.777 | 139 | 93 | 1 | 21 | 159 | 223 | 355 | 9.93e-11 | 60.8 |
Find 47 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCAGCAAGTGTTCTTAC+AGG | 0.276561 | 2_1:+70628138 | None:intergenic |
ATAAATAGCAAGATGTTTAT+CGG | 0.320043 | 2_1:+70628017 | None:intergenic |
GAAAATTGTTGCTGAGGTTC+CGG | 0.329669 | 2_1:-70627950 | Msa0221820:CDS |
TGTTGCTGAGGTTCCGGCTT+TGG | 0.331915 | 2_1:-70627944 | Msa0221820:CDS |
AGTGTTAACACCACGATTAA+TGG | 0.347939 | 2_1:-70628051 | Msa0221820:CDS |
CATCTTGCTATTTATAAAGT+TGG | 0.349855 | 2_1:-70628009 | Msa0221820:CDS |
AACCCTGTAAGAACACTTGC+TGG | 0.390538 | 2_1:-70628141 | Msa0221820:CDS |
GAACTTAACGTGATTAGTTA+TGG | 0.403328 | 2_1:-70628099 | Msa0221820:CDS |
AGTTGGGTGGCACTTGTTGT+TGG | 0.447115 | 2_1:-70627787 | Msa0221820:CDS |
TTCTGAGAAGGCGGAATCGT+CGG | 0.454414 | 2_1:+70628272 | None:intergenic |
TCTGAGAAGGCGGAATCGTC+GGG | 0.465451 | 2_1:+70628273 | None:intergenic |
GCTGGTGCAGGCGCCAAAGC+CGG | 0.482022 | 2_1:+70627931 | None:intergenic |
GCCTTAGCATCAGCAATAGC+TGG | 0.484689 | 2_1:+70627913 | None:intergenic |
GGAAATGTGAACATTTCAAC+GGG | 0.489369 | 2_1:-70628075 | Msa0221820:CDS |
ACCAGCTATTGCTGATGCTA+AGG | 0.493657 | 2_1:-70627914 | Msa0221820:CDS |
GATTGACATGAGTGGAAGTT+GGG | 0.497150 | 2_1:-70627803 | Msa0221820:CDS |
TTAGGAGCTGTGAGTTGAGC+TGG | 0.506453 | 2_1:+70628328 | None:intergenic |
GCCTTCTCAGAACTCAAACC+AGG | 0.511146 | 2_1:-70628261 | Msa0221820:CDS |
AGCAAGTGTTCTTACAGGGT+TGG | 0.512112 | 2_1:+70628143 | None:intergenic |
GTTGAATCTTCAGATGATGA+TGG | 0.519092 | 2_1:+70627868 | None:intergenic |
GGATTGACATGAGTGGAAGT+TGG | 0.523635 | 2_1:-70627804 | Msa0221820:CDS |
GCATCAGCAATAGCTGGTGC+AGG | 0.524825 | 2_1:+70627919 | None:intergenic |
TGCTAAGAAAATTGTTGCTG+AGG | 0.530469 | 2_1:-70627956 | Msa0221820:CDS |
ACACTTGCTGGAAACAAACC+TGG | 0.537319 | 2_1:-70628129 | Msa0221820:CDS |
GTTGTTGGAATTGTCTTCGT+GGG | 0.546805 | 2_1:-70627772 | Msa0221820:CDS |
TTAGCAGGAGAAAATTCTGA+TGG | 0.547442 | 2_1:+70627973 | None:intergenic |
GAGAGTGAGTTGAGGAACCC+TGG | 0.549587 | 2_1:+70628243 | None:intergenic |
TGCGAGGATCGTTAAGCCGC+CGG | 0.550833 | 2_1:+70628296 | None:intergenic |
CAGCTCCTAACCATAAAATC+CGG | 0.551779 | 2_1:-70628315 | Msa0221820:CDS |
TTCCAGCAAGTGTTCTTACA+GGG | 0.554792 | 2_1:+70628139 | None:intergenic |
TGAAGATTCAACAACGTCGC+AGG | 0.554836 | 2_1:-70627857 | Msa0221820:CDS |
CCCTGGTTTGAGTTCTGAGA+AGG | 0.557457 | 2_1:+70628260 | None:intergenic |
TGTTGTTGGAATTGTCTTCG+TGG | 0.560250 | 2_1:-70627773 | Msa0221820:CDS |
CTTAACGTGATTAGTTATGG+TGG | 0.562819 | 2_1:-70628096 | Msa0221820:CDS |
AGGCGGAATCGTCGGGTGCG+AGG | 0.569498 | 2_1:+70628280 | None:intergenic |
CTGTGACTTCTAGTGCTATG+AGG | 0.580983 | 2_1:-70627825 | Msa0221820:CDS |
CCTTCTCAGAACTCAAACCA+GGG | 0.601582 | 2_1:-70628260 | Msa0221820:CDS |
TGGAAATGTGAACATTTCAA+CGG | 0.610164 | 2_1:-70628076 | Msa0221820:CDS |
TTTCATTGGAGAGTGAGTTG+AGG | 0.614496 | 2_1:+70628235 | None:intergenic |
GTTGGAATTGTCTTCGTGGG+AGG | 0.620149 | 2_1:-70627769 | Msa0221820:CDS |
TGGTTTGAGTTCTGAGAAGG+CGG | 0.623094 | 2_1:+70628263 | None:intergenic |
ATACAAAATCAGAAATAACA+TGG | 0.635906 | 2_1:+70628190 | None:intergenic |
ATAGCACTAGAAGTCACAGC+AGG | 0.654697 | 2_1:+70627829 | None:intergenic |
ATATATGATTCCATTAATCG+TGG | 0.660112 | 2_1:+70628041 | None:intergenic |
CTCCTAACCATAAAATCCGG+CGG | 0.662023 | 2_1:-70628312 | Msa0221820:CDS |
TGACATGAGTGGAAGTTGGG+TGG | 0.700477 | 2_1:-70627800 | Msa0221820:CDS |
GCTATGAGGATTGACATGAG+TGG | 0.716443 | 2_1:-70627811 | Msa0221820:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAGTTCAAGTTTTTTTTCAT+TGG | + | chr2_1:70627883-70627902 | None:intergenic | 20.0% |
!! | ATACAAAATCAGAAATAACA+TGG | + | chr2_1:70627914-70627933 | None:intergenic | 20.0% |
!! | ATAAATAGCAAGATGTTTAT+CGG | + | chr2_1:70628087-70628106 | None:intergenic | 20.0% |
! | ATATATGATTCCATTAATCG+TGG | + | chr2_1:70628063-70628082 | None:intergenic | 25.0% |
!!! | CATCTTGCTATTTATAAAGT+TGG | - | chr2_1:70628092-70628111 | Msa0221820:CDS | 25.0% |
! | GAACTTAACGTGATTAGTTA+TGG | - | chr2_1:70628002-70628021 | Msa0221820:CDS | 30.0% |
TGGAAATGTGAACATTTCAA+CGG | - | chr2_1:70628025-70628044 | Msa0221820:CDS | 30.0% | |
!! | GATGATGGTTTTTCTTTTTC+AGG | + | chr2_1:70628221-70628240 | None:intergenic | 30.0% |
! | ACGTTAAGTTCAACTTTTCC+AGG | + | chr2_1:70627993-70628012 | None:intergenic | 35.0% |
! | CTTAACGTGATTAGTTATGG+TGG | - | chr2_1:70628005-70628024 | Msa0221820:CDS | 35.0% |
GGAAATGTGAACATTTCAAC+GGG | - | chr2_1:70628026-70628045 | Msa0221820:CDS | 35.0% | |
AGTGTTAACACCACGATTAA+TGG | - | chr2_1:70628050-70628069 | Msa0221820:CDS | 35.0% | |
TTAGCAGGAGAAAATTCTGA+TGG | + | chr2_1:70628131-70628150 | None:intergenic | 35.0% | |
! | TCAGCAACAATTTTCTTAGC+AGG | + | chr2_1:70628146-70628165 | None:intergenic | 35.0% |
TGCTAAGAAAATTGTTGCTG+AGG | - | chr2_1:70628145-70628164 | Msa0221820:CDS | 35.0% | |
GTTGAATCTTCAGATGATGA+TGG | + | chr2_1:70628236-70628255 | None:intergenic | 35.0% | |
CAGCTCCTAACCATAAAATC+CGG | - | chr2_1:70627786-70627805 | Msa0221820:CDS | 40.0% | |
TTTCATTGGAGAGTGAGTTG+AGG | + | chr2_1:70627869-70627888 | None:intergenic | 40.0% | |
TTCCAGCAAGTGTTCTTACA+GGG | + | chr2_1:70627965-70627984 | None:intergenic | 40.0% | |
TTTCCAGCAAGTGTTCTTAC+AGG | + | chr2_1:70627966-70627985 | None:intergenic | 40.0% | |
GAAAATTGTTGCTGAGGTTC+CGG | - | chr2_1:70628151-70628170 | Msa0221820:CDS | 40.0% | |
!!! | GGTTTTTCTTTTTCAGGCGT+CGG | + | chr2_1:70628215-70628234 | None:intergenic | 40.0% |
GATTGACATGAGTGGAAGTT+GGG | - | chr2_1:70628298-70628317 | Msa0221820:CDS | 40.0% | |
TGTTGTTGGAATTGTCTTCG+TGG | - | chr2_1:70628328-70628347 | Msa0221820:CDS | 40.0% | |
GTTGTTGGAATTGTCTTCGT+GGG | - | chr2_1:70628329-70628348 | Msa0221820:CDS | 40.0% | |
CTCCTAACCATAAAATCCGG+CGG | - | chr2_1:70627789-70627808 | Msa0221820:CDS | 45.0% | |
!! | TGGTTTGAGTTCTGAGAAGG+CGG | + | chr2_1:70627841-70627860 | None:intergenic | 45.0% |
CCTTCTCAGAACTCAAACCA+GGG | - | chr2_1:70627841-70627860 | Msa0221820:CDS | 45.0% | |
AGCAAGTGTTCTTACAGGGT+TGG | + | chr2_1:70627961-70627980 | None:intergenic | 45.0% | |
AACCCTGTAAGAACACTTGC+TGG | - | chr2_1:70627960-70627979 | Msa0221820:CDS | 45.0% | |
! | ACACTTGCTGGAAACAAACC+TGG | - | chr2_1:70627972-70627991 | Msa0221820:CDS | 45.0% |
ACCAGCTATTGCTGATGCTA+AGG | - | chr2_1:70628187-70628206 | Msa0221820:CDS | 45.0% | |
TGAAGATTCAACAACGTCGC+AGG | - | chr2_1:70628244-70628263 | Msa0221820:CDS | 45.0% | |
ATAGCACTAGAAGTCACAGC+AGG | + | chr2_1:70628275-70628294 | None:intergenic | 45.0% | |
CTGTGACTTCTAGTGCTATG+AGG | - | chr2_1:70628276-70628295 | Msa0221820:CDS | 45.0% | |
GCTATGAGGATTGACATGAG+TGG | - | chr2_1:70628290-70628309 | Msa0221820:CDS | 45.0% | |
GGATTGACATGAGTGGAAGT+TGG | - | chr2_1:70628297-70628316 | Msa0221820:CDS | 45.0% | |
! | TTAGGAGCTGTGAGTTGAGC+TGG | + | chr2_1:70627776-70627795 | None:intergenic | 50.0% |
! | AGCCGCCGGATTTTATGGTT+AGG | + | chr2_1:70627794-70627813 | None:intergenic | 50.0% |
! | CGTTAAGCCGCCGGATTTTA+TGG | + | chr2_1:70627799-70627818 | None:intergenic | 50.0% |
! | TTCTGAGAAGGCGGAATCGT+CGG | + | chr2_1:70627832-70627851 | None:intergenic | 50.0% |
GCCTTCTCAGAACTCAAACC+AGG | - | chr2_1:70627840-70627859 | Msa0221820:CDS | 50.0% | |
!! | CCCTGGTTTGAGTTCTGAGA+AGG | + | chr2_1:70627844-70627863 | None:intergenic | 50.0% |
GCCTTAGCATCAGCAATAGC+TGG | + | chr2_1:70628191-70628210 | None:intergenic | 50.0% | |
TGACATGAGTGGAAGTTGGG+TGG | - | chr2_1:70628301-70628320 | Msa0221820:CDS | 50.0% | |
!! | AGTTGGGTGGCACTTGTTGT+TGG | - | chr2_1:70628314-70628333 | Msa0221820:CDS | 50.0% |
GTTGGAATTGTCTTCGTGGG+AGG | - | chr2_1:70628332-70628351 | Msa0221820:CDS | 50.0% | |
TCTGAGAAGGCGGAATCGTC+GGG | + | chr2_1:70627831-70627850 | None:intergenic | 55.0% | |
! | GAGAGTGAGTTGAGGAACCC+TGG | + | chr2_1:70627861-70627880 | None:intergenic | 55.0% |
TGTTGCTGAGGTTCCGGCTT+TGG | - | chr2_1:70628157-70628176 | Msa0221820:CDS | 55.0% | |
GCATCAGCAATAGCTGGTGC+AGG | + | chr2_1:70628185-70628204 | None:intergenic | 55.0% | |
TGCGAGGATCGTTAAGCCGC+CGG | + | chr2_1:70627808-70627827 | None:intergenic | 60.0% | |
AGGCGGAATCGTCGGGTGCG+AGG | + | chr2_1:70627824-70627843 | None:intergenic | 70.0% | |
GCTGGTGCAGGCGCCAAAGC+CGG | + | chr2_1:70628173-70628192 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 70627750 | 70628373 | 70627750 | ID=Msa0221820;Name=Msa0221820 |
chr2_1 | mRNA | 70627750 | 70628373 | 70627750 | ID=Msa0221820-mRNA-1;Parent=Msa0221820;Name=Msa0221820-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|207 |
chr2_1 | exon | 70627750 | 70628373 | 70627750 | ID=Msa0221820-mRNA-1:exon:20266;Parent=Msa0221820-mRNA-1 |
chr2_1 | CDS | 70627750 | 70628373 | 70627750 | ID=Msa0221820-mRNA-1:cds;Parent=Msa0221820-mRNA-1 |
Gene Sequence |
Protein sequence |