Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792190 | XP_013458702.2 | 96.748 | 369 | 12 | 0 | 3 | 371 | 5 | 373 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792190 | sp|O65780|GALE1_CYATE | 81.870 | 353 | 62 | 1 | 12 | 364 | 1 | 351 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792190 | A0A396IKG9 | 96.748 | 369 | 12 | 0 | 3 | 371 | 5 | 373 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618600 | Msa0792190 | 0.835349 | 1.767514e-56 | -8.615850e-47 |
| Msa0643240 | Msa0792190 | 0.885646 | 6.796336e-72 | -8.615850e-47 |
| Msa0657380 | Msa0792190 | 0.900866 | 4.768799e-78 | -8.615850e-47 |
| Msa0682920 | Msa0792190 | 0.867902 | 9.714330e-66 | -8.615850e-47 |
| Msa0708510 | Msa0792190 | 0.901343 | 2.949773e-78 | -8.615850e-47 |
| Msa0792190 | Msa1199250 | 0.877737 | 4.943894e-69 | -8.615850e-47 |
| Msa0792190 | Msa1252480 | 0.865937 | 4.109669e-65 | -8.615850e-47 |
| Msa0792190 | Msa1267350 | 0.998697 | 2.380505e-273 | -8.615850e-47 |
| Msa0792190 | Msa1293220 | 0.901824 | 1.812103e-78 | -8.615850e-47 |
| Msa0792190 | Msa1421310 | 0.806327 | 8.680977e-50 | -8.615850e-47 |
| Msa0142380 | Msa0792190 | 0.992169 | 1.060197e-191 | -8.615850e-47 |
| Msa0194000 | Msa0792190 | 0.904769 | 8.682340e-80 | -8.615850e-47 |
| Msa0221820 | Msa0792190 | 0.872388 | 3.303597e-67 | -8.615850e-47 |
| Msa0235870 | Msa0792190 | 0.909635 | 4.577889e-82 | -8.615850e-47 |
| Msa0263440 | Msa0792190 | 0.896524 | 3.397507e-76 | -8.615850e-47 |
| Msa0269380 | Msa0792190 | 0.999671 | 0.000000e+00 | -8.615850e-47 |
| Msa0288900 | Msa0792190 | 0.884933 | 1.255316e-71 | -8.615850e-47 |
| Msa0301030 | Msa0792190 | 0.876075 | 1.862603e-68 | -8.615850e-47 |
| Msa0314220 | Msa0792190 | 0.879665 | 1.035075e-69 | -8.615850e-47 |
| Msa0314330 | Msa0792190 | 0.864937 | 8.484093e-65 | -8.615850e-47 |
| Msa0338580 | Msa0792190 | 0.858063 | 1.065241e-62 | -8.615850e-47 |
| Msa0547390 | Msa0792190 | 0.839538 | 1.492877e-57 | -8.615850e-47 |
| Msa0565260 | Msa0792190 | 0.837978 | 3.777154e-57 | -8.615850e-47 |
| Msa0602110 | Msa0792190 | 0.837641 | 4.610097e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792190 | MtrunA17_Chr4g0076751 | 96.748 | 369 | 12 | 0 | 3 | 371 | 5 | 373 | 0.0 | 748 |
| Msa0792190 | MtrunA17_Chr8g0386331 | 79.130 | 345 | 72 | 0 | 20 | 364 | 3 | 347 | 0.0 | 590 |
| Msa0792190 | MtrunA17_Chr5g0396581 | 66.860 | 344 | 112 | 2 | 20 | 363 | 44 | 385 | 1.02e-172 | 486 |
| Msa0792190 | MtrunA17_Chr8g0388261 | 67.155 | 341 | 110 | 2 | 23 | 363 | 4 | 342 | 2.70e-170 | 478 |
| Msa0792190 | MtrunA17_Chr5g0396571 | 65.689 | 341 | 115 | 2 | 23 | 363 | 4 | 342 | 3.94e-168 | 473 |
| Msa0792190 | MtrunA17_Chr2g0293521 | 41.311 | 351 | 180 | 10 | 25 | 363 | 73 | 409 | 2.78e-82 | 256 |
| Msa0792190 | MtrunA17_Chr8g0380921 | 40.510 | 353 | 184 | 10 | 25 | 365 | 73 | 411 | 2.17e-78 | 247 |
| Msa0792190 | MtrunA17_Chr1g0147841 | 25.212 | 353 | 223 | 13 | 21 | 362 | 3 | 325 | 1.26e-19 | 90.5 |
| Msa0792190 | MtrunA17_Chr2g0314601 | 24.786 | 351 | 223 | 14 | 23 | 362 | 7 | 327 | 4.52e-19 | 89.0 |
| Msa0792190 | MtrunA17_Chr4g0056941 | 25.197 | 381 | 235 | 11 | 1 | 355 | 63 | 419 | 2.46e-17 | 83.2 |
| Msa0792190 | MtrunA17_Chr8g0359401 | 23.714 | 350 | 228 | 13 | 23 | 362 | 7 | 327 | 2.65e-17 | 83.6 |
| Msa0792190 | MtrunA17_Chr4g0067461 | 27.596 | 337 | 194 | 13 | 18 | 347 | 106 | 399 | 1.56e-16 | 80.5 |
| Msa0792190 | MtrunA17_Chr4g0073351 | 24.862 | 362 | 238 | 11 | 9 | 355 | 79 | 421 | 1.08e-15 | 78.2 |
| Msa0792190 | MtrunA17_Chr5g0398811 | 24.793 | 363 | 241 | 12 | 8 | 355 | 71 | 416 | 3.01e-15 | 76.6 |
| Msa0792190 | MtrunA17_Chr1g0195521 | 27.811 | 338 | 199 | 14 | 25 | 347 | 120 | 427 | 8.73e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792190 | AT1G12780.1 | 78.797 | 349 | 74 | 0 | 19 | 367 | 3 | 351 | 0.0 | 591 |
| Msa0792190 | AT1G63180.1 | 76.590 | 346 | 81 | 0 | 19 | 364 | 3 | 348 | 0.0 | 579 |
| Msa0792190 | AT4G10960.1 | 66.959 | 342 | 111 | 2 | 23 | 364 | 4 | 343 | 2.15e-174 | 489 |
| Msa0792190 | AT4G23920.1 | 67.160 | 338 | 109 | 2 | 23 | 360 | 3 | 338 | 2.08e-170 | 479 |
| Msa0792190 | AT1G64440.1 | 66.372 | 339 | 112 | 2 | 25 | 363 | 5 | 341 | 1.51e-169 | 477 |
| Msa0792190 | AT1G63180.2 | 75.601 | 291 | 71 | 0 | 19 | 309 | 3 | 293 | 6.18e-169 | 474 |
| Msa0792190 | AT5G44480.3 | 38.857 | 350 | 190 | 8 | 25 | 363 | 73 | 409 | 3.92e-78 | 246 |
| Msa0792190 | AT5G44480.4 | 38.857 | 350 | 190 | 8 | 25 | 363 | 73 | 409 | 3.92e-78 | 246 |
| Msa0792190 | AT5G44480.2 | 38.857 | 350 | 190 | 8 | 25 | 363 | 73 | 409 | 3.92e-78 | 246 |
| Msa0792190 | AT5G44480.1 | 38.857 | 350 | 190 | 8 | 25 | 363 | 97 | 433 | 1.03e-77 | 246 |
| Msa0792190 | AT4G20460.1 | 38.000 | 350 | 193 | 7 | 25 | 363 | 72 | 408 | 3.23e-76 | 241 |
| Msa0792190 | AT1G30620.3 | 38.352 | 352 | 193 | 8 | 25 | 365 | 72 | 410 | 3.06e-74 | 236 |
| Msa0792190 | AT1G30620.1 | 38.352 | 352 | 193 | 8 | 25 | 365 | 73 | 411 | 3.08e-74 | 236 |
| Msa0792190 | AT1G30620.6 | 38.352 | 352 | 193 | 8 | 25 | 365 | 73 | 411 | 3.08e-74 | 236 |
| Msa0792190 | AT1G30620.4 | 38.352 | 352 | 193 | 8 | 25 | 365 | 73 | 411 | 3.08e-74 | 236 |
| Msa0792190 | AT1G30620.2 | 38.352 | 352 | 193 | 8 | 25 | 365 | 73 | 411 | 3.08e-74 | 236 |
| Msa0792190 | AT2G34850.3 | 36.134 | 238 | 130 | 6 | 137 | 363 | 1 | 227 | 4.81e-42 | 147 |
| Msa0792190 | AT2G34850.1 | 36.134 | 238 | 130 | 6 | 137 | 363 | 1 | 227 | 4.81e-42 | 147 |
| Msa0792190 | AT2G34850.4 | 36.134 | 238 | 130 | 6 | 137 | 363 | 1 | 227 | 4.81e-42 | 147 |
| Msa0792190 | AT2G34850.2 | 36.134 | 238 | 130 | 6 | 137 | 363 | 1 | 227 | 4.81e-42 | 147 |
| Msa0792190 | AT1G30620.5 | 38.974 | 195 | 116 | 3 | 25 | 219 | 73 | 264 | 2.24e-41 | 147 |
| Msa0792190 | AT3G14790.2 | 24.370 | 357 | 231 | 12 | 16 | 362 | 3 | 330 | 6.28e-19 | 89.0 |
| Msa0792190 | AT1G53500.1 | 24.571 | 350 | 225 | 13 | 23 | 362 | 9 | 329 | 6.95e-19 | 89.0 |
| Msa0792190 | AT3G14790.1 | 24.571 | 350 | 225 | 12 | 23 | 362 | 7 | 327 | 1.11e-18 | 88.2 |
| Msa0792190 | AT3G62830.2 | 28.182 | 330 | 192 | 15 | 25 | 347 | 121 | 412 | 1.09e-17 | 84.7 |
| Msa0792190 | AT3G62830.1 | 28.182 | 330 | 192 | 15 | 25 | 347 | 121 | 412 | 1.09e-17 | 84.7 |
| Msa0792190 | AT3G53520.1 | 27.809 | 356 | 208 | 16 | 21 | 365 | 118 | 435 | 3.50e-17 | 83.2 |
| Msa0792190 | AT2G47650.1 | 27.879 | 330 | 193 | 15 | 25 | 347 | 123 | 414 | 4.61e-17 | 82.8 |
| Msa0792190 | AT1G78570.1 | 24.786 | 351 | 223 | 14 | 23 | 362 | 7 | 327 | 6.56e-17 | 82.8 |
| Msa0792190 | AT3G53520.2 | 27.528 | 356 | 207 | 16 | 21 | 365 | 118 | 433 | 1.55e-15 | 78.2 |
| Msa0792190 | AT4G12250.1 | 25.474 | 369 | 243 | 12 | 1 | 355 | 72 | 422 | 2.86e-15 | 77.4 |
| Msa0792190 | AT2G47650.2 | 27.381 | 336 | 193 | 16 | 25 | 347 | 123 | 420 | 4.86e-15 | 76.6 |
| Msa0792190 | AT4G30440.1 | 25.337 | 371 | 225 | 15 | 9 | 355 | 72 | 414 | 8.23e-15 | 75.9 |
| Msa0792190 | AT3G53520.4 | 27.473 | 364 | 182 | 20 | 21 | 347 | 118 | 436 | 1.22e-13 | 72.4 |
| Msa0792190 | AT3G53520.3 | 29.762 | 252 | 138 | 13 | 21 | 265 | 118 | 337 | 8.34e-11 | 63.2 |
Find 143 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGACACTGAGAAATT+TGG | 0.143359 | 5_3:-3309404 | None:intergenic |
| TCATCCTCTGCAGCAGTTTA+TGG | 0.176720 | 5_3:+3308007 | Msa0792190:CDS |
| TTGCCCGAGCTCAACGTTTA+TGG | 0.230700 | 5_3:+3308347 | Msa0792190:CDS |
| CCAAATTTCTCAGTGTCATT+TGG | 0.235050 | 5_3:+3309404 | Msa0792190:three_prime_UTR |
| CAAATTTCTCAGTGTCATTT+GGG | 0.245600 | 5_3:+3309405 | Msa0792190:three_prime_UTR |
| TAAGTAAGGCATCAGATTAT+TGG | 0.264960 | 5_3:-3308303 | None:intergenic |
| CATAAGGATTCATGGCTTGC+AGG | 0.302019 | 5_3:-3308066 | None:intergenic |
| GCTGCATTTGAAAAGGCTTC+TGG | 0.308975 | 5_3:+3308706 | Msa0792190:CDS |
| AAGACCATGTGCCTAGAAAA+AGG | 0.326070 | 5_3:+3309308 | Msa0792190:three_prime_UTR |
| GGTTCTTCCATAAGGATTCA+TGG | 0.337426 | 5_3:-3308074 | None:intergenic |
| TACCAGCTTGAGCTTGGGTT+TGG | 0.340617 | 5_3:+3309107 | Msa0792190:CDS |
| AAGTAAGGCATCAGATTATT+GGG | 0.352747 | 5_3:-3308302 | None:intergenic |
| GGTCGTTCAGCTTCTAAAAC+AGG | 0.355343 | 5_3:+3307679 | Msa0792190:CDS |
| CTGCAAGCCATGAATCCTTA+TGG | 0.360608 | 5_3:+3308067 | Msa0792190:CDS |
| TGTCCACAGGGTTCGCCATT+TGG | 0.362347 | 5_3:+3307751 | Msa0792190:CDS |
| TATATCTTAAGATGGTAGTA+TGG | 0.362827 | 5_3:-3309232 | None:intergenic |
| CAAATGACACTGAGAAATTT+GGG | 0.368433 | 5_3:-3309403 | None:intergenic |
| GTCGGAAAGGAAAACGATAA+TGG | 0.375088 | 5_3:+3307622 | Msa0792190:CDS |
| ACCAGCTTGAGCTTGGGTTT+GGG | 0.376831 | 5_3:+3309108 | Msa0792190:CDS |
| GTGCATGCAGAGACGGAATT+GGG | 0.379121 | 5_3:+3307564 | None:intergenic |
| TGTGCAGAGACCAATGGAAT+TGG | 0.380858 | 5_3:+3309063 | Msa0792190:CDS |
| GCAATCTTCCAACTGCTACT+TGG | 0.382864 | 5_3:-3308328 | None:intergenic |
| ACGGGTGGGGCGGGGTTCAT+TGG | 0.384071 | 5_3:+3307647 | Msa0792190:CDS |
| CAAGAGAATGAGAGGATAGT+AGG | 0.395463 | 5_3:-3309191 | None:intergenic |
| ACTCACCGCAGTGCCATCTT+TGG | 0.403250 | 5_3:-3308384 | None:intergenic |
| AGTACCTTGGTTCTTCCATA+AGG | 0.405042 | 5_3:-3308082 | None:intergenic |
| TGGGGATACCAGCTTGAGCT+TGG | 0.405772 | 5_3:+3309101 | Msa0792190:CDS |
| ATTGTAGAGATTGTCGATAA+TGG | 0.413237 | 5_3:-3307714 | None:intergenic |
| TAATGGTAACGGGTGGGGCG+GGG | 0.417054 | 5_3:+3307639 | Msa0792190:CDS |
| CAATCTTCCAACTGCTACTT+GGG | 0.419596 | 5_3:-3308327 | None:intergenic |
| GGTGCATGCAGAGACGGAAT+TGG | 0.423829 | 5_3:+3307563 | None:intergenic |
| GGGGATACCAGCTTGAGCTT+GGG | 0.426150 | 5_3:+3309102 | Msa0792190:CDS |
| TGAGATACTTCAATCCGGTT+GGG | 0.434754 | 5_3:+3308237 | Msa0792190:CDS |
| GCACATGAGAGCGGTGAGAT+TGG | 0.438760 | 5_3:+3308260 | Msa0792190:CDS |
| TGTTGCTTGCCCAATTCCAT+TGG | 0.442181 | 5_3:-3309073 | None:intergenic |
| CCGCTCTCATGTGCCCCAAC+CGG | 0.449340 | 5_3:-3308251 | None:intergenic |
| GATAATGGTAACGGGTGGGG+CGG | 0.450585 | 5_3:+3307637 | Msa0792190:CDS |
| TCAAAATTTATATCTTAAGA+TGG | 0.453720 | 5_3:-3309240 | None:intergenic |
| TCAACGCAGGGAATTTCATC+TGG | 0.454641 | 5_3:-3308034 | None:intergenic |
| CACCGCAGTGCCATCTTTGG+TGG | 0.455579 | 5_3:-3308381 | None:intergenic |
| ATAATGGTAACGGGTGGGGC+GGG | 0.455901 | 5_3:+3307638 | Msa0792190:CDS |
| CACAGGGTTCGCCATTTGGT+TGG | 0.459853 | 5_3:+3307755 | Msa0792190:CDS |
| AATGGTTGCTGCATTTGAAA+AGG | 0.465118 | 5_3:+3308699 | Msa0792190:CDS |
| TACAACTTGGGAACTGGCCG+CGG | 0.465961 | 5_3:+3308661 | Msa0792190:CDS |
| ATAGATAGCAGTAGCATCTC+CGG | 0.466954 | 5_3:-3308872 | None:intergenic |
| AGATTATTGGGTATGCCCCT+TGG | 0.469183 | 5_3:-3308290 | None:intergenic |
| GTGCAGAGACCAATGGAATT+GGG | 0.470949 | 5_3:+3309064 | Msa0792190:CDS |
| AGTGCCTACAACTTGGGAAC+TGG | 0.472400 | 5_3:+3308655 | Msa0792190:CDS |
| TACTTAACCCAAGTAGCAGT+TGG | 0.476959 | 5_3:+3308320 | Msa0792190:CDS |
| AACGATAATGGTAACGGGTG+GGG | 0.478155 | 5_3:+3307634 | Msa0792190:CDS |
| TTTCTTTAGATATATAGATC+AGG | 0.479719 | 5_3:+3309376 | Msa0792190:three_prime_UTR |
| CATAAGGCTGAAAATGAACT+TGG | 0.482154 | 5_3:+3308904 | Msa0792190:CDS |
| CATGATTATCCCACCAAAGA+TGG | 0.483974 | 5_3:+3308371 | Msa0792190:CDS |
| TGAACTGCATGTATAACAAA+AGG | 0.488211 | 5_3:-3309267 | None:intergenic |
| CATCTGCCAGGTCCATTACA+TGG | 0.489946 | 5_3:-3308499 | None:intergenic |
| GGTTGTAGTGCCTACAACTT+GGG | 0.490332 | 5_3:+3308649 | Msa0792190:intron |
| ATTGGGCAAGCAACAATCCA+TGG | 0.492922 | 5_3:+3309081 | Msa0792190:CDS |
| CCGTCATGGAAGCTGTCCAC+AGG | 0.495003 | 5_3:+3307738 | Msa0792190:CDS |
| CGGTACATCAGTGCTTCAAA+TGG | 0.497630 | 5_3:+3308681 | Msa0792190:CDS |
| CTGAGATACTTCAATCCGGT+TGG | 0.503362 | 5_3:+3308236 | Msa0792190:CDS |
| TATCTATGCATCTACGCATA+AGG | 0.505409 | 5_3:+3308888 | Msa0792190:CDS |
| GTGAGATTGGCGAAGATCCA+AGG | 0.505565 | 5_3:+3308273 | Msa0792190:CDS |
| GTGGATCACAGCGTCAAACT+TGG | 0.505767 | 5_3:-3307858 | None:intergenic |
| AGGCTGAAAATGAACTTGGT+TGG | 0.510946 | 5_3:+3308908 | Msa0792190:CDS |
| TGACCATAAACGTTGAGCTC+GGG | 0.516024 | 5_3:-3308350 | None:intergenic |
| GTAGCATCTCCGGGCCTCCT+CGG | 0.516501 | 5_3:-3308862 | None:intergenic |
| ACGGGACTTTATCCATGTAA+TGG | 0.518510 | 5_3:+3308487 | Msa0792190:CDS |
| GCAGAGACGGAATTGGGGAT+TGG | 0.519500 | 5_3:+3307570 | Msa0792190:CDS |
| GATGGTAGTATGGTAGAAGA+AGG | 0.521298 | 5_3:-3309222 | None:intergenic |
| AGGTTGTAGTGCCTACAACT+TGG | 0.522897 | 5_3:+3308648 | Msa0792190:intron |
| GCGGCCAGTTCCCAAGTTGT+AGG | 0.524177 | 5_3:-3308659 | None:intergenic |
| CAGCAATGTGACCATCTGCC+AGG | 0.524516 | 5_3:-3308511 | None:intergenic |
| CTCTGCGACACTTTCTCCCA+CGG | 0.527424 | 5_3:-3307897 | None:intergenic |
| ACTGCTACTTGGGTTAAGTA+AGG | 0.528316 | 5_3:-3308317 | None:intergenic |
| GAGATACTTCAATCCGGTTG+GGG | 0.536252 | 5_3:+3308238 | Msa0792190:CDS |
| AAAATGTGTCCGAGGAGGCC+CGG | 0.536292 | 5_3:+3308853 | Msa0792190:CDS |
| GACGCTGTGATCCACTTTGG+TGG | 0.540445 | 5_3:+3307866 | Msa0792190:CDS |
| ACAAAATACAAGAGAATGAG+AGG | 0.545453 | 5_3:-3309199 | None:intergenic |
| AGGAAAACGATAATGGTAAC+GGG | 0.546669 | 5_3:+3307629 | Msa0792190:CDS |
| TTGATTGACAGGGCAAAATA+CGG | 0.547401 | 5_3:+3309029 | Msa0792190:intron |
| ATGGTGAAAGCGGAGGTAGT+TGG | 0.547626 | 5_3:-3307789 | None:intergenic |
| TCTCCAACTCTTGCTTGTTG+CGG | 0.553361 | 5_3:-3307820 | None:intergenic |
| ATTGGAAAGAGATGGTGAGT+GGG | 0.558504 | 5_3:+3307588 | Msa0792190:CDS |
| AAAGTTGAGGACCAACCAAA+TGG | 0.558547 | 5_3:-3307766 | None:intergenic |
| GGCAATACCAATCGTCGGAA+AGG | 0.560434 | 5_3:+3307609 | Msa0792190:CDS |
| CTTTGGTGGTCTGAAAGCCG+TGG | 0.561091 | 5_3:+3307880 | Msa0792190:CDS |
| TGAGATTGGCGAAGATCCAA+GGG | 0.561571 | 5_3:+3308274 | Msa0792190:CDS |
| TCTCCGCAACAAGCAAGAGT+TGG | 0.561707 | 5_3:+3307817 | Msa0792190:CDS |
| TTGGGCAAGCAACAATCCAT+GGG | 0.563515 | 5_3:+3309082 | Msa0792190:CDS |
| CAGGGCAAAATACGGTATAG+AGG | 0.565533 | 5_3:+3309037 | Msa0792190:intron |
| ATTTGAAAAGGCTTCTGGCA+AGG | 0.566930 | 5_3:+3308711 | Msa0792190:CDS |
| TCCCAAACCCAAGCTCAAGC+TGG | 0.567837 | 5_3:-3309109 | None:intergenic |
| AAATGAGGTGCATGCAGAGA+CGG | 0.568533 | 5_3:+3307557 | None:intergenic |
| ATTGCTGAGATACTTCAATC+CGG | 0.576619 | 5_3:+3308232 | Msa0792190:CDS |
| ATGACCATAAACGTTGAGCT+CGG | 0.577684 | 5_3:-3308351 | None:intergenic |
| GATTGCACGAGATATTCAAA+AGG | 0.578799 | 5_3:+3308187 | Msa0792190:CDS |
| CTTTATCCATGTAATGGACC+TGG | 0.579239 | 5_3:+3308493 | Msa0792190:CDS |
| CATGTAATGGACCTGGCAGA+TGG | 0.583826 | 5_3:+3308500 | Msa0792190:CDS |
| AGCAATATTATCCTCCACTC+TGG | 0.589937 | 5_3:-3308215 | None:intergenic |
| TTCAAAAGGCAGAGCCAGAG+TGG | 0.592430 | 5_3:+3308201 | Msa0792190:CDS |
| ATGAAGTGTATATGTGTGGA+AGG | 0.593615 | 5_3:-3309168 | None:intergenic |
| AGCTCAAGCTGGTATCCCCA+TGG | 0.594214 | 5_3:-3309098 | None:intergenic |
| TTTGACGCTGTGATCCACTT+TGG | 0.595864 | 5_3:+3307863 | Msa0792190:CDS |
| CGGAGGTAGTTGGAAAGTTG+AGG | 0.595990 | 5_3:-3307779 | None:intergenic |
| AATTGGGGATTGGAAAGAGA+TGG | 0.602272 | 5_3:+3307580 | Msa0792190:CDS |
| TAGATAGCAGTAGCATCTCC+GGG | 0.603256 | 5_3:-3308871 | None:intergenic |
| AAACGATAATGGTAACGGGT+GGG | 0.605066 | 5_3:+3307633 | Msa0792190:CDS |
| CAGGTGGAAGTCCTCAACGC+AGG | 0.605927 | 5_3:-3308047 | None:intergenic |
| GATTGGAAAGAGATGGTGAG+TGG | 0.608418 | 5_3:+3307587 | Msa0792190:CDS |
| AGGAGATGTGCAGAGACCAA+TGG | 0.609293 | 5_3:+3309057 | Msa0792190:CDS |
| ACCGCAGTGCCATCTTTGGT+GGG | 0.615427 | 5_3:-3308380 | None:intergenic |
| AAGGAAAACGATAATGGTAA+CGG | 0.616022 | 5_3:+3307628 | Msa0792190:CDS |
| CGTCATGGAAGCTGTCCACA+GGG | 0.616430 | 5_3:+3307739 | Msa0792190:CDS |
| AAGGATTCATGGCTTGCAGG+TGG | 0.618135 | 5_3:-3308063 | None:intergenic |
| AAATTTCTCAGTGTCATTTG+GGG | 0.619413 | 5_3:+3309406 | Msa0792190:three_prime_UTR |
| CGGCTTTCAGACCACCAAAG+TGG | 0.621055 | 5_3:-3307877 | None:intergenic |
| TTGTGATCAAAATATTTGAG+TGG | 0.621926 | 5_3:-3307920 | None:intergenic |
| TTTGGTGGTCTGAAAGCCGT+GGG | 0.624204 | 5_3:+3307881 | Msa0792190:CDS |
| TGCATGCAGAGACGGAATTG+GGG | 0.625546 | 5_3:+3307565 | None:intergenic |
| AGGTGGAAGTCCTCAACGCA+GGG | 0.631756 | 5_3:-3308046 | None:intergenic |
| AGATGAAATTCCCTGCGTTG+AGG | 0.633891 | 5_3:+3308036 | Msa0792190:CDS |
| GAAGGTGAAAGTGAAGATGA+AGG | 0.634248 | 5_3:-3309150 | None:intergenic |
| CAATCTCTACAATTCCGTCA+TGG | 0.635522 | 5_3:+3307724 | Msa0792190:CDS |
| AAAACGATAATGGTAACGGG+TGG | 0.639831 | 5_3:+3307632 | Msa0792190:CDS |
| CCGGTTGGGGCACATGAGAG+CGG | 0.640769 | 5_3:+3308251 | Msa0792190:CDS |
| TTCCTATTAAAATGTGTCCG+AGG | 0.642928 | 5_3:+3308845 | Msa0792190:CDS |
| GAGTGGGCAATACCAATCGT+CGG | 0.643532 | 5_3:+3307604 | Msa0792190:CDS |
| GTCGTTCAGCTTCTAAAACA+GGG | 0.648315 | 5_3:+3307680 | Msa0792190:CDS |
| AAAAGGCAGAGCCAGAGTGG+AGG | 0.653042 | 5_3:+3308204 | Msa0792190:CDS |
| GGAGATCGACATGGTGAAAG+CGG | 0.655928 | 5_3:-3307799 | None:intergenic |
| CTATTAAAATGTGTCCGAGG+AGG | 0.658139 | 5_3:+3308848 | Msa0792190:CDS |
| GCTTGTTGCGGAGATCGACA+TGG | 0.660195 | 5_3:-3307808 | None:intergenic |
| TAGGATGAAGTGTATATGTG+TGG | 0.662538 | 5_3:-3309172 | None:intergenic |
| TTGACCATAAACTGCTGCAG+AGG | 0.664691 | 5_3:-3308011 | None:intergenic |
| CAACCAAATGGCGAACCCTG+TGG | 0.665060 | 5_3:-3307754 | None:intergenic |
| GATCGACATGGTGAAAGCGG+AGG | 0.669740 | 5_3:-3307796 | None:intergenic |
| CCTGTGGACAGCTTCCATGA+CGG | 0.679733 | 5_3:-3307738 | None:intergenic |
| GAATCCTTATGGAAGAACCA+AGG | 0.701863 | 5_3:+3308078 | Msa0792190:CDS |
| GGGGTTCATTGGATCACACA+CGG | 0.730801 | 5_3:+3307658 | Msa0792190:CDS |
| TTTGAAGCACTGATGTACCG+CGG | 0.744540 | 5_3:-3308678 | None:intergenic |
| TGGGCAAGCAACAATCCATG+GGG | 0.753069 | 5_3:+3309083 | Msa0792190:CDS |
| GAGATTGGCGAAGATCCAAG+GGG | 0.771146 | 5_3:+3308275 | Msa0792190:CDS |
| TCCCACCAAAGATGGCACTG+CGG | 0.774633 | 5_3:+3308379 | Msa0792190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTATTCATTATTTTAA+TGG | - | chr5_3:3308123-3308142 | None:intergenic | 10.0% |
| !! | AATTAAATACTGTTATTATT+AGG | + | chr5_3:3308628-3308647 | Msa0792190:intron | 10.0% |
| !!! | ATCATTATTCATTATTTTAA+TGG | - | chr5_3:3308123-3308142 | None:intergenic | 10.0% |
| !! | AATTAAATACTGTTATTATT+AGG | + | chr5_3:3308628-3308647 | Msa0792190:intron | 10.0% |
| !! | TCAAAATTTATATCTTAAGA+TGG | - | chr5_3:3309243-3309262 | None:intergenic | 15.0% |
| !! | TCAAAATTTATATCTTAAGA+TGG | - | chr5_3:3309243-3309262 | None:intergenic | 15.0% |
| !! | TAAATTTCAGTGTAAAAAGA+TGG | + | chr5_3:3307979-3307998 | Msa0792190:CDS | 20.0% |
| !! | ATAAACAGTTAAATGTAAGT+AGG | - | chr5_3:3308577-3308596 | None:intergenic | 20.0% |
| !! | AGAATACAATACAATACATT+CGG | - | chr5_3:3308782-3308801 | None:intergenic | 20.0% |
| !!! | ACATTTTAATAGGAATTTTC+TGG | - | chr5_3:3308840-3308859 | None:intergenic | 20.0% |
| !! | AGTACTTTACTATATTTCAT+TGG | + | chr5_3:3308936-3308955 | Msa0792190:intron | 20.0% |
| !! | GTACTTTACTATATTTCATT+GGG | + | chr5_3:3308937-3308956 | Msa0792190:intron | 20.0% |
| !! | TTTCTTTAGATATATAGATC+AGG | + | chr5_3:3309376-3309395 | Msa0792190:three_prime_UTR | 20.0% |
| !! | TAAATTTCAGTGTAAAAAGA+TGG | + | chr5_3:3307979-3307998 | Msa0792190:CDS | 20.0% |
| !! | ATAAACAGTTAAATGTAAGT+AGG | - | chr5_3:3308577-3308596 | None:intergenic | 20.0% |
| !! | AGAATACAATACAATACATT+CGG | - | chr5_3:3308782-3308801 | None:intergenic | 20.0% |
| !!! | ACATTTTAATAGGAATTTTC+TGG | - | chr5_3:3308840-3308859 | None:intergenic | 20.0% |
| !! | AGTACTTTACTATATTTCAT+TGG | + | chr5_3:3308936-3308955 | Msa0792190:intron | 20.0% |
| !! | GTACTTTACTATATTTCATT+GGG | + | chr5_3:3308937-3308956 | Msa0792190:intron | 20.0% |
| !! | TTTCTTTAGATATATAGATC+AGG | + | chr5_3:3309376-3309395 | Msa0792190:three_prime_UTR | 20.0% |
| ! | TTGTGATCAAAATATTTGAG+TGG | - | chr5_3:3307923-3307942 | None:intergenic | 25.0% |
| !!! | CAAATATTTTGATCACAACT+TGG | + | chr5_3:3307925-3307944 | Msa0792190:CDS | 25.0% |
| ! | ATGAATAATGATACTTAAGC+TGG | + | chr5_3:3308131-3308150 | Msa0792190:intron | 25.0% |
| ! | TCAGTATCAGAATATATGTT+GGG | - | chr5_3:3308450-3308469 | None:intergenic | 25.0% |
| ! | GACAATATATGAATCAGATA+CGG | + | chr5_3:3308468-3308487 | Msa0792190:intron | 25.0% |
| ! | ACAATATATGAATCAGATAC+GGG | + | chr5_3:3308469-3308488 | Msa0792190:intron | 25.0% |
| ! | AACAGTATTTAATTAAGTCC+TGG | - | chr5_3:3308622-3308641 | None:intergenic | 25.0% |
| ! | TTTATTTACGATTGATTGAC+AGG | + | chr5_3:3309018-3309037 | Msa0792190:intron | 25.0% |
| ! | TTATTTACGATTGATTGACA+GGG | + | chr5_3:3309019-3309038 | Msa0792190:intron | 25.0% |
| ! | TATATCTTAAGATGGTAGTA+TGG | - | chr5_3:3309235-3309254 | None:intergenic | 25.0% |
| ! | TTGTGATCAAAATATTTGAG+TGG | - | chr5_3:3307923-3307942 | None:intergenic | 25.0% |
| !!! | CAAATATTTTGATCACAACT+TGG | + | chr5_3:3307925-3307944 | Msa0792190:CDS | 25.0% |
| ! | ATGAATAATGATACTTAAGC+TGG | + | chr5_3:3308131-3308150 | Msa0792190:intron | 25.0% |
| ! | TCAGTATCAGAATATATGTT+GGG | - | chr5_3:3308450-3308469 | None:intergenic | 25.0% |
| ! | GACAATATATGAATCAGATA+CGG | + | chr5_3:3308468-3308487 | Msa0792190:intron | 25.0% |
| ! | ACAATATATGAATCAGATAC+GGG | + | chr5_3:3308469-3308488 | Msa0792190:intron | 25.0% |
| ! | AACAGTATTTAATTAAGTCC+TGG | - | chr5_3:3308622-3308641 | None:intergenic | 25.0% |
| ! | TTTATTTACGATTGATTGAC+AGG | + | chr5_3:3309018-3309037 | Msa0792190:intron | 25.0% |
| ! | TTATTTACGATTGATTGACA+GGG | + | chr5_3:3309019-3309038 | Msa0792190:intron | 25.0% |
| ! | TATATCTTAAGATGGTAGTA+TGG | - | chr5_3:3309235-3309254 | None:intergenic | 25.0% |
| ! | AAGGAAAACGATAATGGTAA+CGG | + | chr5_3:3307628-3307647 | Msa0792190:CDS | 30.0% |
| ATTGTAGAGATTGTCGATAA+TGG | - | chr5_3:3307717-3307736 | None:intergenic | 30.0% | |
| !!! | TATTTTGATCACAACTTGGT+TGG | + | chr5_3:3307929-3307948 | Msa0792190:CDS | 30.0% |
| AGTCATCACTTGAAAAAGAT+TGG | - | chr5_3:3307960-3307979 | None:intergenic | 30.0% | |
| ATATACTGAGTTAAGTACCT+TGG | - | chr5_3:3308098-3308117 | None:intergenic | 30.0% | |
| ! | AAGTAAGGCATCAGATTATT+GGG | - | chr5_3:3308305-3308324 | None:intergenic | 30.0% |
| ! | TAAGTAAGGCATCAGATTAT+TGG | - | chr5_3:3308306-3308325 | None:intergenic | 30.0% |
| GTCAGTATCAGAATATATGT+TGG | - | chr5_3:3308451-3308470 | None:intergenic | 30.0% | |
| CTTTACTATATTTCATTGGG+AGG | + | chr5_3:3308940-3308959 | Msa0792190:intron | 30.0% | |
| ACAAAATACAAGAGAATGAG+AGG | - | chr5_3:3309202-3309221 | None:intergenic | 30.0% | |
| TGAACTGCATGTATAACAAA+AGG | - | chr5_3:3309270-3309289 | None:intergenic | 30.0% | |
| ! | TAATCAAAGAGCCTTTTTCT+AGG | - | chr5_3:3309322-3309341 | None:intergenic | 30.0% |
| CAAATGACACTGAGAAATTT+GGG | - | chr5_3:3309406-3309425 | None:intergenic | 30.0% | |
| !! | CAAATTTCTCAGTGTCATTT+GGG | + | chr5_3:3309405-3309424 | Msa0792190:three_prime_UTR | 30.0% |
| !! | AAATTTCTCAGTGTCATTTG+GGG | + | chr5_3:3309406-3309425 | Msa0792190:three_prime_UTR | 30.0% |
| ! | AAGGAAAACGATAATGGTAA+CGG | + | chr5_3:3307628-3307647 | Msa0792190:CDS | 30.0% |
| ATTGTAGAGATTGTCGATAA+TGG | - | chr5_3:3307717-3307736 | None:intergenic | 30.0% | |
| !!! | TATTTTGATCACAACTTGGT+TGG | + | chr5_3:3307929-3307948 | Msa0792190:CDS | 30.0% |
| AGTCATCACTTGAAAAAGAT+TGG | - | chr5_3:3307960-3307979 | None:intergenic | 30.0% | |
| ATATACTGAGTTAAGTACCT+TGG | - | chr5_3:3308098-3308117 | None:intergenic | 30.0% | |
| ! | AAGTAAGGCATCAGATTATT+GGG | - | chr5_3:3308305-3308324 | None:intergenic | 30.0% |
| ! | TAAGTAAGGCATCAGATTAT+TGG | - | chr5_3:3308306-3308325 | None:intergenic | 30.0% |
| GTCAGTATCAGAATATATGT+TGG | - | chr5_3:3308451-3308470 | None:intergenic | 30.0% | |
| CTTTACTATATTTCATTGGG+AGG | + | chr5_3:3308940-3308959 | Msa0792190:intron | 30.0% | |
| ACAAAATACAAGAGAATGAG+AGG | - | chr5_3:3309202-3309221 | None:intergenic | 30.0% | |
| TGAACTGCATGTATAACAAA+AGG | - | chr5_3:3309270-3309289 | None:intergenic | 30.0% | |
| ! | TAATCAAAGAGCCTTTTTCT+AGG | - | chr5_3:3309322-3309341 | None:intergenic | 30.0% |
| CAAATGACACTGAGAAATTT+GGG | - | chr5_3:3309406-3309425 | None:intergenic | 30.0% | |
| !! | CAAATTTCTCAGTGTCATTT+GGG | + | chr5_3:3309405-3309424 | Msa0792190:three_prime_UTR | 30.0% |
| !! | AAATTTCTCAGTGTCATTTG+GGG | + | chr5_3:3309406-3309425 | Msa0792190:three_prime_UTR | 30.0% |
| ! | AGGAAAACGATAATGGTAAC+GGG | + | chr5_3:3307629-3307648 | Msa0792190:CDS | 35.0% |
| ! | TGATATATGACAGCTTTTCG+CGG | + | chr5_3:3308160-3308179 | Msa0792190:intron | 35.0% |
| GATTGCACGAGATATTCAAA+AGG | + | chr5_3:3308187-3308206 | Msa0792190:CDS | 35.0% | |
| ATTGCTGAGATACTTCAATC+CGG | + | chr5_3:3308232-3308251 | Msa0792190:CDS | 35.0% | |
| AATATATGTTGGGTGCTAAC+TGG | - | chr5_3:3308440-3308459 | None:intergenic | 35.0% | |
| ! | CTTTTTGCGACAGACAAAAT+CGG | + | chr5_3:3308545-3308564 | Msa0792190:CDS | 35.0% |
| ATTGTAGATTAGAGCTAACC+AGG | + | chr5_3:3308601-3308620 | Msa0792190:intron | 35.0% | |
| AATGGTTGCTGCATTTGAAA+AGG | + | chr5_3:3308699-3308718 | Msa0792190:CDS | 35.0% | |
| TGTATTCTTGATCCTTCGTT+TGG | + | chr5_3:3308794-3308813 | Msa0792190:intron | 35.0% | |
| TTCCTATTAAAATGTGTCCG+AGG | + | chr5_3:3308845-3308864 | Msa0792190:CDS | 35.0% | |
| TATCTATGCATCTACGCATA+AGG | + | chr5_3:3308888-3308907 | Msa0792190:CDS | 35.0% | |
| CATAAGGCTGAAAATGAACT+TGG | + | chr5_3:3308904-3308923 | Msa0792190:CDS | 35.0% | |
| ACTATATTTCATTGGGAGGA+AGG | + | chr5_3:3308944-3308963 | Msa0792190:intron | 35.0% | |
| CTATATTTCATTGGGAGGAA+GGG | + | chr5_3:3308945-3308964 | Msa0792190:intron | 35.0% | |
| TTGATTGACAGGGCAAAATA+CGG | + | chr5_3:3309029-3309048 | Msa0792190:intron | 35.0% | |
| ATGAAGTGTATATGTGTGGA+AGG | - | chr5_3:3309171-3309190 | None:intergenic | 35.0% | |
| TAGGATGAAGTGTATATGTG+TGG | - | chr5_3:3309175-3309194 | None:intergenic | 35.0% | |
| CCAAATGACACTGAGAAATT+TGG | - | chr5_3:3309407-3309426 | None:intergenic | 35.0% | |
| ! | CCAAATTTCTCAGTGTCATT+TGG | + | chr5_3:3309404-3309423 | Msa0792190:three_prime_UTR | 35.0% |
| ! | AGGAAAACGATAATGGTAAC+GGG | + | chr5_3:3307629-3307648 | Msa0792190:CDS | 35.0% |
| ! | TGATATATGACAGCTTTTCG+CGG | + | chr5_3:3308160-3308179 | Msa0792190:intron | 35.0% |
| GATTGCACGAGATATTCAAA+AGG | + | chr5_3:3308187-3308206 | Msa0792190:CDS | 35.0% | |
| ATTGCTGAGATACTTCAATC+CGG | + | chr5_3:3308232-3308251 | Msa0792190:CDS | 35.0% | |
| AATATATGTTGGGTGCTAAC+TGG | - | chr5_3:3308440-3308459 | None:intergenic | 35.0% | |
| ! | CTTTTTGCGACAGACAAAAT+CGG | + | chr5_3:3308545-3308564 | Msa0792190:CDS | 35.0% |
| ATTGTAGATTAGAGCTAACC+AGG | + | chr5_3:3308601-3308620 | Msa0792190:intron | 35.0% | |
| AATGGTTGCTGCATTTGAAA+AGG | + | chr5_3:3308699-3308718 | Msa0792190:CDS | 35.0% | |
| TGTATTCTTGATCCTTCGTT+TGG | + | chr5_3:3308794-3308813 | Msa0792190:intron | 35.0% | |
| TTCCTATTAAAATGTGTCCG+AGG | + | chr5_3:3308845-3308864 | Msa0792190:CDS | 35.0% | |
| TATCTATGCATCTACGCATA+AGG | + | chr5_3:3308888-3308907 | Msa0792190:CDS | 35.0% | |
| CATAAGGCTGAAAATGAACT+TGG | + | chr5_3:3308904-3308923 | Msa0792190:CDS | 35.0% | |
| ACTATATTTCATTGGGAGGA+AGG | + | chr5_3:3308944-3308963 | Msa0792190:intron | 35.0% | |
| CTATATTTCATTGGGAGGAA+GGG | + | chr5_3:3308945-3308964 | Msa0792190:intron | 35.0% | |
| TTGATTGACAGGGCAAAATA+CGG | + | chr5_3:3309029-3309048 | Msa0792190:intron | 35.0% | |
| ATGAAGTGTATATGTGTGGA+AGG | - | chr5_3:3309171-3309190 | None:intergenic | 35.0% | |
| TAGGATGAAGTGTATATGTG+TGG | - | chr5_3:3309175-3309194 | None:intergenic | 35.0% | |
| CCAAATGACACTGAGAAATT+TGG | - | chr5_3:3309407-3309426 | None:intergenic | 35.0% | |
| ! | CCAAATTTCTCAGTGTCATT+TGG | + | chr5_3:3309404-3309423 | Msa0792190:three_prime_UTR | 35.0% |
| AATTGGGGATTGGAAAGAGA+TGG | + | chr5_3:3307580-3307599 | Msa0792190:CDS | 40.0% | |
| ATTGGAAAGAGATGGTGAGT+GGG | + | chr5_3:3307588-3307607 | Msa0792190:CDS | 40.0% | |
| GTCGGAAAGGAAAACGATAA+TGG | + | chr5_3:3307622-3307641 | Msa0792190:CDS | 40.0% | |
| !! | AAAACGATAATGGTAACGGG+TGG | + | chr5_3:3307632-3307651 | Msa0792190:CDS | 40.0% |
| !! | AAACGATAATGGTAACGGGT+GGG | + | chr5_3:3307633-3307652 | Msa0792190:CDS | 40.0% |
| !! | GTCGTTCAGCTTCTAAAACA+GGG | + | chr5_3:3307680-3307699 | Msa0792190:CDS | 40.0% |
| CAATCTCTACAATTCCGTCA+TGG | + | chr5_3:3307724-3307743 | Msa0792190:CDS | 40.0% | |
| AAAGTTGAGGACCAACCAAA+TGG | - | chr5_3:3307769-3307788 | None:intergenic | 40.0% | |
| GGTTCTTCCATAAGGATTCA+TGG | - | chr5_3:3308077-3308096 | None:intergenic | 40.0% | |
| GAATCCTTATGGAAGAACCA+AGG | + | chr5_3:3308078-3308097 | Msa0792190:CDS | 40.0% | |
| ! | AGTACCTTGGTTCTTCCATA+AGG | - | chr5_3:3308085-3308104 | None:intergenic | 40.0% |
| AGCAATATTATCCTCCACTC+TGG | - | chr5_3:3308218-3308237 | None:intergenic | 40.0% | |
| TGAGATACTTCAATCCGGTT+GGG | + | chr5_3:3308237-3308256 | Msa0792190:CDS | 40.0% | |
| ! | ACTGCTACTTGGGTTAAGTA+AGG | - | chr5_3:3308320-3308339 | None:intergenic | 40.0% |
| TACTTAACCCAAGTAGCAGT+TGG | + | chr5_3:3308320-3308339 | Msa0792190:CDS | 40.0% | |
| ! | CAATCTTCCAACTGCTACTT+GGG | - | chr5_3:3308330-3308349 | None:intergenic | 40.0% |
| ATGACCATAAACGTTGAGCT+CGG | - | chr5_3:3308354-3308373 | None:intergenic | 40.0% | |
| CATGATTATCCCACCAAAGA+TGG | + | chr5_3:3308371-3308390 | Msa0792190:CDS | 40.0% | |
| ACGGGACTTTATCCATGTAA+TGG | + | chr5_3:3308487-3308506 | Msa0792190:CDS | 40.0% | |
| !! | CTTTATCCATGTAATGGACC+TGG | + | chr5_3:3308493-3308512 | Msa0792190:CDS | 40.0% |
| ATTTGAAAAGGCTTCTGGCA+AGG | + | chr5_3:3308711-3308730 | Msa0792190:CDS | 40.0% | |
| TCTGGAAAACAGATCCAAGA+AGG | - | chr5_3:3308822-3308841 | None:intergenic | 40.0% | |
| !! | CTCCTCGGACACATTTTAAT+AGG | - | chr5_3:3308850-3308869 | None:intergenic | 40.0% |
| CTATTAAAATGTGTCCGAGG+AGG | + | chr5_3:3308848-3308867 | Msa0792190:CDS | 40.0% | |
| ATAGATAGCAGTAGCATCTC+CGG | - | chr5_3:3308875-3308894 | None:intergenic | 40.0% | |
| AGGCTGAAAATGAACTTGGT+TGG | + | chr5_3:3308908-3308927 | Msa0792190:CDS | 40.0% | |
| GAAGGTGAAAGTGAAGATGA+AGG | - | chr5_3:3309153-3309172 | None:intergenic | 40.0% | |
| CAAGAGAATGAGAGGATAGT+AGG | - | chr5_3:3309194-3309213 | None:intergenic | 40.0% | |
| GATGGTAGTATGGTAGAAGA+AGG | - | chr5_3:3309225-3309244 | None:intergenic | 40.0% | |
| AAGACCATGTGCCTAGAAAA+AGG | + | chr5_3:3309308-3309327 | Msa0792190:three_prime_UTR | 40.0% | |
| AATTGGGGATTGGAAAGAGA+TGG | + | chr5_3:3307580-3307599 | Msa0792190:CDS | 40.0% | |
| ATTGGAAAGAGATGGTGAGT+GGG | + | chr5_3:3307588-3307607 | Msa0792190:CDS | 40.0% | |
| GTCGGAAAGGAAAACGATAA+TGG | + | chr5_3:3307622-3307641 | Msa0792190:CDS | 40.0% | |
| !! | AAAACGATAATGGTAACGGG+TGG | + | chr5_3:3307632-3307651 | Msa0792190:CDS | 40.0% |
| !! | AAACGATAATGGTAACGGGT+GGG | + | chr5_3:3307633-3307652 | Msa0792190:CDS | 40.0% |
| !! | GTCGTTCAGCTTCTAAAACA+GGG | + | chr5_3:3307680-3307699 | Msa0792190:CDS | 40.0% |
| CAATCTCTACAATTCCGTCA+TGG | + | chr5_3:3307724-3307743 | Msa0792190:CDS | 40.0% | |
| AAAGTTGAGGACCAACCAAA+TGG | - | chr5_3:3307769-3307788 | None:intergenic | 40.0% | |
| GGTTCTTCCATAAGGATTCA+TGG | - | chr5_3:3308077-3308096 | None:intergenic | 40.0% | |
| GAATCCTTATGGAAGAACCA+AGG | + | chr5_3:3308078-3308097 | Msa0792190:CDS | 40.0% | |
| ! | AGTACCTTGGTTCTTCCATA+AGG | - | chr5_3:3308085-3308104 | None:intergenic | 40.0% |
| AGCAATATTATCCTCCACTC+TGG | - | chr5_3:3308218-3308237 | None:intergenic | 40.0% | |
| TGAGATACTTCAATCCGGTT+GGG | + | chr5_3:3308237-3308256 | Msa0792190:CDS | 40.0% | |
| ! | ACTGCTACTTGGGTTAAGTA+AGG | - | chr5_3:3308320-3308339 | None:intergenic | 40.0% |
| TACTTAACCCAAGTAGCAGT+TGG | + | chr5_3:3308320-3308339 | Msa0792190:CDS | 40.0% | |
| ! | CAATCTTCCAACTGCTACTT+GGG | - | chr5_3:3308330-3308349 | None:intergenic | 40.0% |
| ATGACCATAAACGTTGAGCT+CGG | - | chr5_3:3308354-3308373 | None:intergenic | 40.0% | |
| CATGATTATCCCACCAAAGA+TGG | + | chr5_3:3308371-3308390 | Msa0792190:CDS | 40.0% | |
| ACGGGACTTTATCCATGTAA+TGG | + | chr5_3:3308487-3308506 | Msa0792190:CDS | 40.0% | |
| !! | CTTTATCCATGTAATGGACC+TGG | + | chr5_3:3308493-3308512 | Msa0792190:CDS | 40.0% |
| ATTTGAAAAGGCTTCTGGCA+AGG | + | chr5_3:3308711-3308730 | Msa0792190:CDS | 40.0% | |
| TCTGGAAAACAGATCCAAGA+AGG | - | chr5_3:3308822-3308841 | None:intergenic | 40.0% | |
| !! | CTCCTCGGACACATTTTAAT+AGG | - | chr5_3:3308850-3308869 | None:intergenic | 40.0% |
| CTATTAAAATGTGTCCGAGG+AGG | + | chr5_3:3308848-3308867 | Msa0792190:CDS | 40.0% | |
| ATAGATAGCAGTAGCATCTC+CGG | - | chr5_3:3308875-3308894 | None:intergenic | 40.0% | |
| AGGCTGAAAATGAACTTGGT+TGG | + | chr5_3:3308908-3308927 | Msa0792190:CDS | 40.0% | |
| GAAGGTGAAAGTGAAGATGA+AGG | - | chr5_3:3309153-3309172 | None:intergenic | 40.0% | |
| CAAGAGAATGAGAGGATAGT+AGG | - | chr5_3:3309194-3309213 | None:intergenic | 40.0% | |
| GATGGTAGTATGGTAGAAGA+AGG | - | chr5_3:3309225-3309244 | None:intergenic | 40.0% | |
| AAGACCATGTGCCTAGAAAA+AGG | + | chr5_3:3309308-3309327 | Msa0792190:three_prime_UTR | 40.0% | |
| GATTGGAAAGAGATGGTGAG+TGG | + | chr5_3:3307587-3307606 | Msa0792190:CDS | 45.0% | |
| ! | TCGTTTTCCTTTCCGACGAT+TGG | - | chr5_3:3307619-3307638 | None:intergenic | 45.0% |
| !! | AACGATAATGGTAACGGGTG+GGG | + | chr5_3:3307634-3307653 | Msa0792190:CDS | 45.0% |
| !! | GGTCGTTCAGCTTCTAAAAC+AGG | + | chr5_3:3307679-3307698 | Msa0792190:CDS | 45.0% |
| ! | TCTCCAACTCTTGCTTGTTG+CGG | - | chr5_3:3307823-3307842 | None:intergenic | 45.0% |
| TTTGACGCTGTGATCCACTT+TGG | + | chr5_3:3307863-3307882 | Msa0792190:CDS | 45.0% | |
| TCATCCTCTGCAGCAGTTTA+TGG | + | chr5_3:3308007-3308026 | Msa0792190:CDS | 45.0% | |
| TTGACCATAAACTGCTGCAG+AGG | - | chr5_3:3308014-3308033 | None:intergenic | 45.0% | |
| TCAACGCAGGGAATTTCATC+TGG | - | chr5_3:3308037-3308056 | None:intergenic | 45.0% | |
| AGATGAAATTCCCTGCGTTG+AGG | + | chr5_3:3308036-3308055 | Msa0792190:CDS | 45.0% | |
| ! | CATAAGGATTCATGGCTTGC+AGG | - | chr5_3:3308069-3308088 | None:intergenic | 45.0% |
| CTGCAAGCCATGAATCCTTA+TGG | + | chr5_3:3308067-3308086 | Msa0792190:CDS | 45.0% | |
| CTGAGATACTTCAATCCGGT+TGG | + | chr5_3:3308236-3308255 | Msa0792190:CDS | 45.0% | |
| GAGATACTTCAATCCGGTTG+GGG | + | chr5_3:3308238-3308257 | Msa0792190:CDS | 45.0% | |
| TGAGATTGGCGAAGATCCAA+GGG | + | chr5_3:3308274-3308293 | Msa0792190:CDS | 45.0% | |
| AGATTATTGGGTATGCCCCT+TGG | - | chr5_3:3308293-3308312 | None:intergenic | 45.0% | |
| GCAATCTTCCAACTGCTACT+TGG | - | chr5_3:3308331-3308350 | None:intergenic | 45.0% | |
| TGACCATAAACGTTGAGCTC+GGG | - | chr5_3:3308353-3308372 | None:intergenic | 45.0% | |
| TTGCGACAGACAAAATCGGT+AGG | + | chr5_3:3308549-3308568 | Msa0792190:intron | 45.0% | |
| AGGTTGTAGTGCCTACAACT+TGG | + | chr5_3:3308648-3308667 | Msa0792190:intron | 45.0% | |
| GGTTGTAGTGCCTACAACTT+GGG | + | chr5_3:3308649-3308668 | Msa0792190:intron | 45.0% | |
| !! | TTTGAAGCACTGATGTACCG+CGG | - | chr5_3:3308681-3308700 | None:intergenic | 45.0% |
| CGGTACATCAGTGCTTCAAA+TGG | + | chr5_3:3308681-3308700 | Msa0792190:CDS | 45.0% | |
| GCTGCATTTGAAAAGGCTTC+TGG | + | chr5_3:3308706-3308725 | Msa0792190:CDS | 45.0% | |
| TAGATAGCAGTAGCATCTCC+GGG | - | chr5_3:3308874-3308893 | None:intergenic | 45.0% | |
| TATTTCATTGGGAGGAAGGG+AGG | + | chr5_3:3308948-3308967 | Msa0792190:intron | 45.0% | |
| CAGGGCAAAATACGGTATAG+AGG | + | chr5_3:3309037-3309056 | Msa0792190:intron | 45.0% | |
| TGTGCAGAGACCAATGGAAT+TGG | + | chr5_3:3309063-3309082 | Msa0792190:CDS | 45.0% | |
| GTGCAGAGACCAATGGAATT+GGG | + | chr5_3:3309064-3309083 | Msa0792190:CDS | 45.0% | |
| ! | TGTTGCTTGCCCAATTCCAT+TGG | - | chr5_3:3309076-3309095 | None:intergenic | 45.0% |
| ATTGGGCAAGCAACAATCCA+TGG | + | chr5_3:3309081-3309100 | Msa0792190:CDS | 45.0% | |
| TTGGGCAAGCAACAATCCAT+GGG | + | chr5_3:3309082-3309101 | Msa0792190:CDS | 45.0% | |
| ! | AGAGCCTTTTTCTAGGCACA+TGG | - | chr5_3:3309315-3309334 | None:intergenic | 45.0% |
| GATTGGAAAGAGATGGTGAG+TGG | + | chr5_3:3307587-3307606 | Msa0792190:CDS | 45.0% | |
| ! | TCGTTTTCCTTTCCGACGAT+TGG | - | chr5_3:3307619-3307638 | None:intergenic | 45.0% |
| !! | AACGATAATGGTAACGGGTG+GGG | + | chr5_3:3307634-3307653 | Msa0792190:CDS | 45.0% |
| !! | GGTCGTTCAGCTTCTAAAAC+AGG | + | chr5_3:3307679-3307698 | Msa0792190:CDS | 45.0% |
| ! | TCTCCAACTCTTGCTTGTTG+CGG | - | chr5_3:3307823-3307842 | None:intergenic | 45.0% |
| TTTGACGCTGTGATCCACTT+TGG | + | chr5_3:3307863-3307882 | Msa0792190:CDS | 45.0% | |
| TCATCCTCTGCAGCAGTTTA+TGG | + | chr5_3:3308007-3308026 | Msa0792190:CDS | 45.0% | |
| TTGACCATAAACTGCTGCAG+AGG | - | chr5_3:3308014-3308033 | None:intergenic | 45.0% | |
| TCAACGCAGGGAATTTCATC+TGG | - | chr5_3:3308037-3308056 | None:intergenic | 45.0% | |
| AGATGAAATTCCCTGCGTTG+AGG | + | chr5_3:3308036-3308055 | Msa0792190:CDS | 45.0% | |
| ! | CATAAGGATTCATGGCTTGC+AGG | - | chr5_3:3308069-3308088 | None:intergenic | 45.0% |
| CTGCAAGCCATGAATCCTTA+TGG | + | chr5_3:3308067-3308086 | Msa0792190:CDS | 45.0% | |
| CTGAGATACTTCAATCCGGT+TGG | + | chr5_3:3308236-3308255 | Msa0792190:CDS | 45.0% | |
| GAGATACTTCAATCCGGTTG+GGG | + | chr5_3:3308238-3308257 | Msa0792190:CDS | 45.0% | |
| TGAGATTGGCGAAGATCCAA+GGG | + | chr5_3:3308274-3308293 | Msa0792190:CDS | 45.0% | |
| AGATTATTGGGTATGCCCCT+TGG | - | chr5_3:3308293-3308312 | None:intergenic | 45.0% | |
| GCAATCTTCCAACTGCTACT+TGG | - | chr5_3:3308331-3308350 | None:intergenic | 45.0% | |
| TGACCATAAACGTTGAGCTC+GGG | - | chr5_3:3308353-3308372 | None:intergenic | 45.0% | |
| TTGCGACAGACAAAATCGGT+AGG | + | chr5_3:3308549-3308568 | Msa0792190:intron | 45.0% | |
| AGGTTGTAGTGCCTACAACT+TGG | + | chr5_3:3308648-3308667 | Msa0792190:intron | 45.0% | |
| GGTTGTAGTGCCTACAACTT+GGG | + | chr5_3:3308649-3308668 | Msa0792190:intron | 45.0% | |
| !! | TTTGAAGCACTGATGTACCG+CGG | - | chr5_3:3308681-3308700 | None:intergenic | 45.0% |
| CGGTACATCAGTGCTTCAAA+TGG | + | chr5_3:3308681-3308700 | Msa0792190:CDS | 45.0% | |
| GCTGCATTTGAAAAGGCTTC+TGG | + | chr5_3:3308706-3308725 | Msa0792190:CDS | 45.0% | |
| TAGATAGCAGTAGCATCTCC+GGG | - | chr5_3:3308874-3308893 | None:intergenic | 45.0% | |
| TATTTCATTGGGAGGAAGGG+AGG | + | chr5_3:3308948-3308967 | Msa0792190:intron | 45.0% | |
| CAGGGCAAAATACGGTATAG+AGG | + | chr5_3:3309037-3309056 | Msa0792190:intron | 45.0% | |
| TGTGCAGAGACCAATGGAAT+TGG | + | chr5_3:3309063-3309082 | Msa0792190:CDS | 45.0% | |
| GTGCAGAGACCAATGGAATT+GGG | + | chr5_3:3309064-3309083 | Msa0792190:CDS | 45.0% | |
| ! | TGTTGCTTGCCCAATTCCAT+TGG | - | chr5_3:3309076-3309095 | None:intergenic | 45.0% |
| ATTGGGCAAGCAACAATCCA+TGG | + | chr5_3:3309081-3309100 | Msa0792190:CDS | 45.0% | |
| TTGGGCAAGCAACAATCCAT+GGG | + | chr5_3:3309082-3309101 | Msa0792190:CDS | 45.0% | |
| ! | AGAGCCTTTTTCTAGGCACA+TGG | - | chr5_3:3309315-3309334 | None:intergenic | 45.0% |
| GAGTGGGCAATACCAATCGT+CGG | + | chr5_3:3307604-3307623 | Msa0792190:CDS | 50.0% | |
| GGCAATACCAATCGTCGGAA+AGG | + | chr5_3:3307609-3307628 | Msa0792190:CDS | 50.0% | |
| GGGGTTCATTGGATCACACA+CGG | + | chr5_3:3307658-3307677 | Msa0792190:CDS | 50.0% | |
| CGGAGGTAGTTGGAAAGTTG+AGG | - | chr5_3:3307782-3307801 | None:intergenic | 50.0% | |
| ATGGTGAAAGCGGAGGTAGT+TGG | - | chr5_3:3307792-3307811 | None:intergenic | 50.0% | |
| GGAGATCGACATGGTGAAAG+CGG | - | chr5_3:3307802-3307821 | None:intergenic | 50.0% | |
| TCTCCGCAACAAGCAAGAGT+TGG | + | chr5_3:3307817-3307836 | Msa0792190:CDS | 50.0% | |
| GTGGATCACAGCGTCAAACT+TGG | - | chr5_3:3307861-3307880 | None:intergenic | 50.0% | |
| ! | TTTGGTGGTCTGAAAGCCGT+GGG | + | chr5_3:3307881-3307900 | Msa0792190:CDS | 50.0% |
| ! | AAGGATTCATGGCTTGCAGG+TGG | - | chr5_3:3308066-3308085 | None:intergenic | 50.0% |
| TTCAAAAGGCAGAGCCAGAG+TGG | + | chr5_3:3308201-3308220 | Msa0792190:CDS | 50.0% | |
| GTGAGATTGGCGAAGATCCA+AGG | + | chr5_3:3308273-3308292 | Msa0792190:CDS | 50.0% | |
| GAGATTGGCGAAGATCCAAG+GGG | + | chr5_3:3308275-3308294 | Msa0792190:CDS | 50.0% | |
| TTGCCCGAGCTCAACGTTTA+TGG | + | chr5_3:3308347-3308366 | Msa0792190:CDS | 50.0% | |
| CATCTGCCAGGTCCATTACA+TGG | - | chr5_3:3308502-3308521 | None:intergenic | 50.0% | |
| !! | CATGTAATGGACCTGGCAGA+TGG | + | chr5_3:3308500-3308519 | Msa0792190:CDS | 50.0% |
| AGTGCCTACAACTTGGGAAC+TGG | + | chr5_3:3308655-3308674 | Msa0792190:CDS | 50.0% | |
| ! | TCCTTCGTTTGGCTCCTTCT+TGG | + | chr5_3:3308805-3308824 | Msa0792190:intron | 50.0% |
| TCCAAGAAGGAGCCAAACGA+AGG | - | chr5_3:3308809-3308828 | None:intergenic | 50.0% | |
| AGGAGATGTGCAGAGACCAA+TGG | + | chr5_3:3309057-3309076 | Msa0792190:CDS | 50.0% | |
| TGGGCAAGCAACAATCCATG+GGG | + | chr5_3:3309083-3309102 | Msa0792190:CDS | 50.0% | |
| TACCAGCTTGAGCTTGGGTT+TGG | + | chr5_3:3309107-3309126 | Msa0792190:CDS | 50.0% | |
| ACCAGCTTGAGCTTGGGTTT+GGG | + | chr5_3:3309108-3309127 | Msa0792190:CDS | 50.0% | |
| GAGTGGGCAATACCAATCGT+CGG | + | chr5_3:3307604-3307623 | Msa0792190:CDS | 50.0% | |
| GGCAATACCAATCGTCGGAA+AGG | + | chr5_3:3307609-3307628 | Msa0792190:CDS | 50.0% | |
| GGGGTTCATTGGATCACACA+CGG | + | chr5_3:3307658-3307677 | Msa0792190:CDS | 50.0% | |
| CGGAGGTAGTTGGAAAGTTG+AGG | - | chr5_3:3307782-3307801 | None:intergenic | 50.0% | |
| ATGGTGAAAGCGGAGGTAGT+TGG | - | chr5_3:3307792-3307811 | None:intergenic | 50.0% | |
| GGAGATCGACATGGTGAAAG+CGG | - | chr5_3:3307802-3307821 | None:intergenic | 50.0% | |
| TCTCCGCAACAAGCAAGAGT+TGG | + | chr5_3:3307817-3307836 | Msa0792190:CDS | 50.0% | |
| GTGGATCACAGCGTCAAACT+TGG | - | chr5_3:3307861-3307880 | None:intergenic | 50.0% | |
| ! | TTTGGTGGTCTGAAAGCCGT+GGG | + | chr5_3:3307881-3307900 | Msa0792190:CDS | 50.0% |
| ! | AAGGATTCATGGCTTGCAGG+TGG | - | chr5_3:3308066-3308085 | None:intergenic | 50.0% |
| TTCAAAAGGCAGAGCCAGAG+TGG | + | chr5_3:3308201-3308220 | Msa0792190:CDS | 50.0% | |
| GTGAGATTGGCGAAGATCCA+AGG | + | chr5_3:3308273-3308292 | Msa0792190:CDS | 50.0% | |
| GAGATTGGCGAAGATCCAAG+GGG | + | chr5_3:3308275-3308294 | Msa0792190:CDS | 50.0% | |
| TTGCCCGAGCTCAACGTTTA+TGG | + | chr5_3:3308347-3308366 | Msa0792190:CDS | 50.0% | |
| CATCTGCCAGGTCCATTACA+TGG | - | chr5_3:3308502-3308521 | None:intergenic | 50.0% | |
| !! | CATGTAATGGACCTGGCAGA+TGG | + | chr5_3:3308500-3308519 | Msa0792190:CDS | 50.0% |
| AGTGCCTACAACTTGGGAAC+TGG | + | chr5_3:3308655-3308674 | Msa0792190:CDS | 50.0% | |
| ! | TCCTTCGTTTGGCTCCTTCT+TGG | + | chr5_3:3308805-3308824 | Msa0792190:intron | 50.0% |
| TCCAAGAAGGAGCCAAACGA+AGG | - | chr5_3:3308809-3308828 | None:intergenic | 50.0% | |
| AGGAGATGTGCAGAGACCAA+TGG | + | chr5_3:3309057-3309076 | Msa0792190:CDS | 50.0% | |
| TGGGCAAGCAACAATCCATG+GGG | + | chr5_3:3309083-3309102 | Msa0792190:CDS | 50.0% | |
| TACCAGCTTGAGCTTGGGTT+TGG | + | chr5_3:3309107-3309126 | Msa0792190:CDS | 50.0% | |
| ACCAGCTTGAGCTTGGGTTT+GGG | + | chr5_3:3309108-3309127 | Msa0792190:CDS | 50.0% | |
| GCAGAGACGGAATTGGGGAT+TGG | + | chr5_3:3307570-3307589 | Msa0792190:CDS | 55.0% | |
| !! | GATAATGGTAACGGGTGGGG+CGG | + | chr5_3:3307637-3307656 | Msa0792190:CDS | 55.0% |
| !! | ATAATGGTAACGGGTGGGGC+GGG | + | chr5_3:3307638-3307657 | Msa0792190:CDS | 55.0% |
| CCTGTGGACAGCTTCCATGA+CGG | - | chr5_3:3307741-3307760 | None:intergenic | 55.0% | |
| CGTCATGGAAGCTGTCCACA+GGG | + | chr5_3:3307739-3307758 | Msa0792190:CDS | 55.0% | |
| TGTCCACAGGGTTCGCCATT+TGG | + | chr5_3:3307751-3307770 | Msa0792190:CDS | 55.0% | |
| CAACCAAATGGCGAACCCTG+TGG | - | chr5_3:3307757-3307776 | None:intergenic | 55.0% | |
| CACAGGGTTCGCCATTTGGT+TGG | + | chr5_3:3307755-3307774 | Msa0792190:CDS | 55.0% | |
| GATCGACATGGTGAAAGCGG+AGG | - | chr5_3:3307799-3307818 | None:intergenic | 55.0% | |
| ! | GCTTGTTGCGGAGATCGACA+TGG | - | chr5_3:3307811-3307830 | None:intergenic | 55.0% |
| GACGCTGTGATCCACTTTGG+TGG | + | chr5_3:3307866-3307885 | Msa0792190:CDS | 55.0% | |
| CGGCTTTCAGACCACCAAAG+TGG | - | chr5_3:3307880-3307899 | None:intergenic | 55.0% | |
| ! | CTTTGGTGGTCTGAAAGCCG+TGG | + | chr5_3:3307880-3307899 | Msa0792190:CDS | 55.0% |
| CTCTGCGACACTTTCTCCCA+CGG | - | chr5_3:3307900-3307919 | None:intergenic | 55.0% | |
| AGGTGGAAGTCCTCAACGCA+GGG | - | chr5_3:3308049-3308068 | None:intergenic | 55.0% | |
| AAAAGGCAGAGCCAGAGTGG+AGG | + | chr5_3:3308204-3308223 | Msa0792190:CDS | 55.0% | |
| GCACATGAGAGCGGTGAGAT+TGG | + | chr5_3:3308260-3308279 | Msa0792190:CDS | 55.0% | |
| TCCCACCAAAGATGGCACTG+CGG | + | chr5_3:3308379-3308398 | Msa0792190:CDS | 55.0% | |
| ACCGCAGTGCCATCTTTGGT+GGG | - | chr5_3:3308383-3308402 | None:intergenic | 55.0% | |
| ACTCACCGCAGTGCCATCTT+TGG | - | chr5_3:3308387-3308406 | None:intergenic | 55.0% | |
| CAGCAATGTGACCATCTGCC+AGG | - | chr5_3:3308514-3308533 | None:intergenic | 55.0% | |
| TACAACTTGGGAACTGGCCG+CGG | + | chr5_3:3308661-3308680 | Msa0792190:CDS | 55.0% | |
| AAAATGTGTCCGAGGAGGCC+CGG | + | chr5_3:3308853-3308872 | Msa0792190:CDS | 55.0% | |
| TTCATTGGGAGGAAGGGAGG+AGG | + | chr5_3:3308951-3308970 | Msa0792190:intron | 55.0% | |
| TCATTGGGAGGAAGGGAGGA+GGG | + | chr5_3:3308952-3308971 | Msa0792190:intron | 55.0% | |
| AGCTCAAGCTGGTATCCCCA+TGG | - | chr5_3:3309101-3309120 | None:intergenic | 55.0% | |
| TGGGGATACCAGCTTGAGCT+TGG | + | chr5_3:3309101-3309120 | Msa0792190:CDS | 55.0% | |
| GGGGATACCAGCTTGAGCTT+GGG | + | chr5_3:3309102-3309121 | Msa0792190:CDS | 55.0% | |
| TCCCAAACCCAAGCTCAAGC+TGG | - | chr5_3:3309112-3309131 | None:intergenic | 55.0% | |
| GCAGAGACGGAATTGGGGAT+TGG | + | chr5_3:3307570-3307589 | Msa0792190:CDS | 55.0% | |
| !! | GATAATGGTAACGGGTGGGG+CGG | + | chr5_3:3307637-3307656 | Msa0792190:CDS | 55.0% |
| !! | ATAATGGTAACGGGTGGGGC+GGG | + | chr5_3:3307638-3307657 | Msa0792190:CDS | 55.0% |
| CCTGTGGACAGCTTCCATGA+CGG | - | chr5_3:3307741-3307760 | None:intergenic | 55.0% | |
| CGTCATGGAAGCTGTCCACA+GGG | + | chr5_3:3307739-3307758 | Msa0792190:CDS | 55.0% | |
| TGTCCACAGGGTTCGCCATT+TGG | + | chr5_3:3307751-3307770 | Msa0792190:CDS | 55.0% | |
| CAACCAAATGGCGAACCCTG+TGG | - | chr5_3:3307757-3307776 | None:intergenic | 55.0% | |
| CACAGGGTTCGCCATTTGGT+TGG | + | chr5_3:3307755-3307774 | Msa0792190:CDS | 55.0% | |
| GATCGACATGGTGAAAGCGG+AGG | - | chr5_3:3307799-3307818 | None:intergenic | 55.0% | |
| ! | GCTTGTTGCGGAGATCGACA+TGG | - | chr5_3:3307811-3307830 | None:intergenic | 55.0% |
| GACGCTGTGATCCACTTTGG+TGG | + | chr5_3:3307866-3307885 | Msa0792190:CDS | 55.0% | |
| CGGCTTTCAGACCACCAAAG+TGG | - | chr5_3:3307880-3307899 | None:intergenic | 55.0% | |
| ! | CTTTGGTGGTCTGAAAGCCG+TGG | + | chr5_3:3307880-3307899 | Msa0792190:CDS | 55.0% |
| CTCTGCGACACTTTCTCCCA+CGG | - | chr5_3:3307900-3307919 | None:intergenic | 55.0% | |
| AGGTGGAAGTCCTCAACGCA+GGG | - | chr5_3:3308049-3308068 | None:intergenic | 55.0% | |
| AAAAGGCAGAGCCAGAGTGG+AGG | + | chr5_3:3308204-3308223 | Msa0792190:CDS | 55.0% | |
| GCACATGAGAGCGGTGAGAT+TGG | + | chr5_3:3308260-3308279 | Msa0792190:CDS | 55.0% | |
| TCCCACCAAAGATGGCACTG+CGG | + | chr5_3:3308379-3308398 | Msa0792190:CDS | 55.0% | |
| ACCGCAGTGCCATCTTTGGT+GGG | - | chr5_3:3308383-3308402 | None:intergenic | 55.0% | |
| ACTCACCGCAGTGCCATCTT+TGG | - | chr5_3:3308387-3308406 | None:intergenic | 55.0% | |
| CAGCAATGTGACCATCTGCC+AGG | - | chr5_3:3308514-3308533 | None:intergenic | 55.0% | |
| TACAACTTGGGAACTGGCCG+CGG | + | chr5_3:3308661-3308680 | Msa0792190:CDS | 55.0% | |
| AAAATGTGTCCGAGGAGGCC+CGG | + | chr5_3:3308853-3308872 | Msa0792190:CDS | 55.0% | |
| TTCATTGGGAGGAAGGGAGG+AGG | + | chr5_3:3308951-3308970 | Msa0792190:intron | 55.0% | |
| TCATTGGGAGGAAGGGAGGA+GGG | + | chr5_3:3308952-3308971 | Msa0792190:intron | 55.0% | |
| AGCTCAAGCTGGTATCCCCA+TGG | - | chr5_3:3309101-3309120 | None:intergenic | 55.0% | |
| TGGGGATACCAGCTTGAGCT+TGG | + | chr5_3:3309101-3309120 | Msa0792190:CDS | 55.0% | |
| GGGGATACCAGCTTGAGCTT+GGG | + | chr5_3:3309102-3309121 | Msa0792190:CDS | 55.0% | |
| TCCCAAACCCAAGCTCAAGC+TGG | - | chr5_3:3309112-3309131 | None:intergenic | 55.0% | |
| !! | TAATGGTAACGGGTGGGGCG+GGG | + | chr5_3:3307639-3307658 | Msa0792190:CDS | 60.0% |
| CCGTCATGGAAGCTGTCCAC+AGG | + | chr5_3:3307738-3307757 | Msa0792190:CDS | 60.0% | |
| CAGGTGGAAGTCCTCAACGC+AGG | - | chr5_3:3308050-3308069 | None:intergenic | 60.0% | |
| CACCGCAGTGCCATCTTTGG+TGG | - | chr5_3:3308384-3308403 | None:intergenic | 60.0% | |
| GCGGCCAGTTCCCAAGTTGT+AGG | - | chr5_3:3308662-3308681 | None:intergenic | 60.0% | |
| !! | TAATGGTAACGGGTGGGGCG+GGG | + | chr5_3:3307639-3307658 | Msa0792190:CDS | 60.0% |
| CCGTCATGGAAGCTGTCCAC+AGG | + | chr5_3:3307738-3307757 | Msa0792190:CDS | 60.0% | |
| CAGGTGGAAGTCCTCAACGC+AGG | - | chr5_3:3308050-3308069 | None:intergenic | 60.0% | |
| CACCGCAGTGCCATCTTTGG+TGG | - | chr5_3:3308384-3308403 | None:intergenic | 60.0% | |
| GCGGCCAGTTCCCAAGTTGT+AGG | - | chr5_3:3308662-3308681 | None:intergenic | 60.0% | |
| CCGCTCTCATGTGCCCCAAC+CGG | - | chr5_3:3308254-3308273 | None:intergenic | 65.0% | |
| CCGGTTGGGGCACATGAGAG+CGG | + | chr5_3:3308251-3308270 | Msa0792190:CDS | 65.0% | |
| GTAGCATCTCCGGGCCTCCT+CGG | - | chr5_3:3308865-3308884 | None:intergenic | 65.0% | |
| CCGCTCTCATGTGCCCCAAC+CGG | - | chr5_3:3308254-3308273 | None:intergenic | 65.0% | |
| CCGGTTGGGGCACATGAGAG+CGG | + | chr5_3:3308251-3308270 | Msa0792190:CDS | 65.0% | |
| GTAGCATCTCCGGGCCTCCT+CGG | - | chr5_3:3308865-3308884 | None:intergenic | 65.0% | |
| ACGGGTGGGGCGGGGTTCAT+TGG | + | chr5_3:3307647-3307666 | Msa0792190:CDS | 70.0% | |
| ACGGGTGGGGCGGGGTTCAT+TGG | + | chr5_3:3307647-3307666 | Msa0792190:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 3307566 | 3309433 | 3307566 | ID=Msa0792190;Name=Msa0792190 |
| chr5_3 | mRNA | 3307566 | 3309433 | 3307566 | ID=Msa0792190-mRNA-1;Parent=Msa0792190;Name=Msa0792190-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.83|1|1|1|6|294|372 |
| chr5_3 | exon | 3307566 | 3308099 | 3307566 | ID=Msa0792190-mRNA-1:exon:1468;Parent=Msa0792190-mRNA-1 |
| chr5_3 | exon | 3308173 | 3308400 | 3308173 | ID=Msa0792190-mRNA-1:exon:1469;Parent=Msa0792190-mRNA-1 |
| chr5_3 | exon | 3308485 | 3308566 | 3308485 | ID=Msa0792190-mRNA-1:exon:1470;Parent=Msa0792190-mRNA-1 |
| chr5_3 | exon | 3308650 | 3308732 | 3308650 | ID=Msa0792190-mRNA-1:exon:1471;Parent=Msa0792190-mRNA-1 |
| chr5_3 | exon | 3308841 | 3308932 | 3308841 | ID=Msa0792190-mRNA-1:exon:1472;Parent=Msa0792190-mRNA-1 |
| chr5_3 | exon | 3309040 | 3309433 | 3309040 | ID=Msa0792190-mRNA-1:exon:1473;Parent=Msa0792190-mRNA-1 |
| chr5_3 | CDS | 3307566 | 3308099 | 3307566 | ID=Msa0792190-mRNA-1:cds;Parent=Msa0792190-mRNA-1 |
| chr5_3 | CDS | 3308173 | 3308400 | 3308173 | ID=Msa0792190-mRNA-1:cds;Parent=Msa0792190-mRNA-1 |
| chr5_3 | CDS | 3308485 | 3308566 | 3308485 | ID=Msa0792190-mRNA-1:cds;Parent=Msa0792190-mRNA-1 |
| chr5_3 | CDS | 3308650 | 3308732 | 3308650 | ID=Msa0792190-mRNA-1:cds;Parent=Msa0792190-mRNA-1 |
| chr5_3 | CDS | 3308841 | 3308932 | 3308841 | ID=Msa0792190-mRNA-1:cds;Parent=Msa0792190-mRNA-1 |
| chr5_3 | CDS | 3309040 | 3309139 | 3309040 | ID=Msa0792190-mRNA-1:cds;Parent=Msa0792190-mRNA-1 |
| chr5_3 | three_prime_UTR | 3309140 | 3309433 | 3309140 | ID=Msa0792190-mRNA-1:three_prime_utr;Parent=Msa0792190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
