Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643240 | XP_003606412.1 | 51.442 | 208 | 67 | 7 | 50 | 226 | 53 | 257 | 1.63e-50 | 185 |
| Msa0643240 | XP_003606412.1 | 96.739 | 276 | 9 | 0 | 234 | 509 | 16 | 291 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643240 | sp|Q8LEE9|FLA12_ARATH | 54.000 | 150 | 67 | 2 | 291 | 439 | 39 | 187 | 9.20e-44 | 158 |
| Msa0643240 | sp|Q8LEE9|FLA12_ARATH | 44.295 | 149 | 63 | 3 | 67 | 195 | 39 | 187 | 1.84e-31 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643240 | G7JPF4 | 51.442 | 208 | 67 | 7 | 50 | 226 | 53 | 257 | 7.80e-51 | 185 |
| Msa0643240 | G7JPF4 | 96.739 | 276 | 9 | 0 | 234 | 509 | 16 | 291 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618050 | Msa0643240 | 0.815038 | 1.134670e-51 | -8.615850e-47 |
| Msa0618600 | Msa0643240 | 0.933185 | 2.759580e-95 | -8.615850e-47 |
| Msa0643240 | Msa0657380 | 0.918757 | 1.049786e-86 | -8.615850e-47 |
| Msa0643240 | Msa0682920 | 0.885657 | 6.732679e-72 | -8.615850e-47 |
| Msa0643240 | Msa0708510 | 0.931011 | 7.084584e-94 | -8.615850e-47 |
| Msa0643240 | Msa0792190 | 0.885646 | 6.796336e-72 | -8.615850e-47 |
| Msa0643240 | Msa1035290 | 0.825328 | 4.977482e-54 | -8.615850e-47 |
| Msa0643240 | Msa1075380 | 0.821546 | 3.811377e-53 | -8.615850e-47 |
| Msa0643240 | Msa1116460 | 0.823879 | 1.092071e-53 | -8.615850e-47 |
| Msa0643240 | Msa1199250 | 0.925605 | 1.462171e-90 | -8.615850e-47 |
| Msa0643240 | Msa1199260 | 0.823642 | 1.241283e-53 | -8.615850e-47 |
| Msa0643240 | Msa1252480 | 0.911266 | 7.384620e-83 | -8.615850e-47 |
| Msa0643240 | Msa1267350 | 0.884773 | 1.440293e-71 | -8.615850e-47 |
| Msa0643240 | Msa1293220 | 0.934950 | 1.822915e-96 | -8.615850e-47 |
| Msa0643240 | Msa1421310 | 0.833034 | 6.724493e-56 | -8.615850e-47 |
| Msa0142380 | Msa0643240 | 0.883041 | 6.272136e-71 | -8.615850e-47 |
| Msa0194000 | Msa0643240 | 0.914389 | 2.029494e-84 | -8.615850e-47 |
| Msa0221820 | Msa0643240 | 0.842447 | 2.571284e-58 | -8.615850e-47 |
| Msa0235870 | Msa0643240 | 0.919539 | 3.969385e-87 | -8.615850e-47 |
| Msa0250450 | Msa0643240 | 0.822623 | 2.145263e-53 | -8.615850e-47 |
| Msa0263440 | Msa0643240 | 0.910912 | 1.100868e-82 | -8.615850e-47 |
| Msa0269380 | Msa0643240 | 0.884958 | 1.228513e-71 | -8.615850e-47 |
| Msa0288900 | Msa0643240 | 0.944058 | 3.905980e-103 | -8.615850e-47 |
| Msa0301030 | Msa0643240 | 0.892308 | 1.789455e-74 | -8.615850e-47 |
| Msa0314220 | Msa0643240 | 0.925663 | 1.351763e-90 | -8.615850e-47 |
| Msa0314330 | Msa0643240 | 0.929077 | 1.164691e-92 | -8.615850e-47 |
| Msa0327020 | Msa0643240 | 0.839680 | 1.370677e-57 | -8.615850e-47 |
| Msa0338580 | Msa0643240 | 0.850095 | 2.119449e-60 | -8.615850e-47 |
| Msa0485970 | Msa0643240 | 0.837838 | 4.104151e-57 | -8.615850e-47 |
| Msa0547390 | Msa0643240 | 0.921714 | 2.507722e-88 | -8.615850e-47 |
| Msa0565260 | Msa0643240 | 0.893319 | 7.024014e-75 | -8.615850e-47 |
| Msa0580580 | Msa0643240 | 0.809168 | 2.161737e-50 | -8.615850e-47 |
| Msa0602110 | Msa0643240 | 0.940808 | 1.236216e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643240 | MtrunA17_Chr4g0029441 | 96.739 | 276 | 9 | 0 | 234 | 509 | 16 | 291 | 0.0 | 530 |
| Msa0643240 | MtrunA17_Chr4g0029441 | 51.442 | 208 | 67 | 7 | 50 | 226 | 53 | 257 | 1.50e-54 | 185 |
| Msa0643240 | MtrunA17_Chr4g0029501 | 93.818 | 275 | 17 | 0 | 234 | 508 | 16 | 290 | 8.63e-170 | 481 |
| Msa0643240 | MtrunA17_Chr4g0029501 | 50.806 | 248 | 85 | 9 | 14 | 229 | 18 | 260 | 6.77e-57 | 191 |
| Msa0643240 | MtrunA17_Chr4g0029431 | 90.514 | 253 | 4 | 2 | 1 | 233 | 1 | 253 | 2.18e-152 | 436 |
| Msa0643240 | MtrunA17_Chr4g0029431 | 55.330 | 197 | 79 | 3 | 248 | 440 | 25 | 216 | 2.95e-63 | 207 |
| Msa0643240 | MtrunA17_Chr4g0026611 | 79.422 | 277 | 54 | 2 | 234 | 507 | 18 | 294 | 5.22e-135 | 392 |
| Msa0643240 | MtrunA17_Chr4g0026611 | 48.536 | 239 | 86 | 7 | 1 | 204 | 3 | 239 | 7.69e-54 | 183 |
| Msa0643240 | MtrunA17_Chr2g0326411 | 57.609 | 276 | 105 | 5 | 234 | 503 | 16 | 285 | 1.69e-92 | 283 |
| Msa0643240 | MtrunA17_Chr2g0326411 | 45.833 | 216 | 89 | 5 | 2 | 194 | 6 | 216 | 8.43e-47 | 164 |
| Msa0643240 | MtrunA17_Chr2g0326421 | 57.977 | 257 | 73 | 8 | 8 | 235 | 6 | 256 | 4.39e-73 | 233 |
| Msa0643240 | MtrunA17_Chr2g0326421 | 47.036 | 253 | 118 | 5 | 260 | 507 | 41 | 282 | 9.24e-66 | 214 |
| Msa0643240 | MtrunA17_Chr8g0379611 | 57.143 | 210 | 77 | 3 | 240 | 438 | 17 | 224 | 1.80e-71 | 230 |
| Msa0643240 | MtrunA17_Chr8g0379611 | 48.988 | 247 | 84 | 7 | 16 | 228 | 16 | 254 | 1.45e-56 | 191 |
| Msa0643240 | MtrunA17_Chr2g0284411 | 58.000 | 200 | 75 | 2 | 291 | 490 | 68 | 258 | 8.78e-70 | 224 |
| Msa0643240 | MtrunA17_Chr2g0284411 | 50.199 | 251 | 99 | 5 | 1 | 230 | 1 | 246 | 1.63e-55 | 187 |
| Msa0643240 | MtrunA17_Chr2g0284431 | 58.000 | 200 | 75 | 2 | 291 | 490 | 89 | 279 | 6.35e-69 | 223 |
| Msa0643240 | MtrunA17_Chr2g0284431 | 51.394 | 251 | 96 | 5 | 1 | 230 | 22 | 267 | 4.76e-56 | 189 |
| Msa0643240 | MtrunA17_Chr2g0284451 | 45.296 | 287 | 117 | 10 | 237 | 501 | 20 | 288 | 2.69e-63 | 208 |
| Msa0643240 | MtrunA17_Chr2g0284451 | 40.741 | 270 | 110 | 8 | 1 | 230 | 2 | 261 | 2.41e-46 | 163 |
| Msa0643240 | MtrunA17_Chr8g0379621 | 58.564 | 181 | 61 | 5 | 261 | 438 | 73 | 242 | 9.23e-62 | 204 |
| Msa0643240 | MtrunA17_Chr8g0379621 | 48.402 | 219 | 82 | 6 | 38 | 225 | 55 | 273 | 2.05e-48 | 169 |
| Msa0643240 | MtrunA17_Chr8g0379631 | 54.054 | 222 | 77 | 7 | 240 | 438 | 23 | 242 | 2.34e-61 | 204 |
| Msa0643240 | MtrunA17_Chr8g0379631 | 48.430 | 223 | 82 | 7 | 36 | 225 | 51 | 273 | 2.23e-48 | 169 |
| Msa0643240 | MtrunA17_Chr4g0029331 | 50.962 | 208 | 70 | 5 | 236 | 443 | 37 | 212 | 1.27e-53 | 182 |
| Msa0643240 | MtrunA17_Chr4g0029331 | 45.413 | 218 | 70 | 6 | 1 | 198 | 24 | 212 | 3.47e-46 | 162 |
| Msa0643240 | MtrunA17_Chr2g0326431 | 54.362 | 149 | 67 | 1 | 291 | 439 | 41 | 188 | 1.18e-47 | 165 |
| Msa0643240 | MtrunA17_Chr2g0326431 | 51.678 | 149 | 51 | 3 | 67 | 195 | 41 | 188 | 4.13e-39 | 142 |
| Msa0643240 | MtrunA17_Chr7g0263981 | 44.304 | 158 | 86 | 2 | 283 | 439 | 32 | 188 | 5.95e-36 | 134 |
| Msa0643240 | MtrunA17_Chr7g0263981 | 42.581 | 155 | 67 | 3 | 63 | 196 | 36 | 189 | 5.67e-29 | 115 |
| Msa0643240 | MtrunA17_Chr2g0325021 | 39.394 | 198 | 112 | 2 | 284 | 474 | 31 | 227 | 1.52e-28 | 113 |
| Msa0643240 | MtrunA17_Chr2g0325021 | 35.000 | 160 | 85 | 2 | 56 | 196 | 27 | 186 | 5.62e-23 | 98.2 |
| Msa0643240 | MtrunA17_Chr7g0246041 | 32.967 | 182 | 115 | 3 | 284 | 465 | 177 | 351 | 9.37e-18 | 85.5 |
| Msa0643240 | MtrunA17_Chr7g0246041 | 32.704 | 159 | 89 | 4 | 67 | 209 | 184 | 340 | 2.17e-12 | 68.9 |
| Msa0643240 | MtrunA17_Chr5g0448001 | 30.233 | 215 | 136 | 6 | 290 | 499 | 47 | 252 | 6.76e-16 | 77.8 |
| Msa0643240 | MtrunA17_Chr5g0448001 | 31.579 | 171 | 92 | 5 | 67 | 213 | 48 | 217 | 2.79e-12 | 67.0 |
| Msa0643240 | MtrunA17_Chr5g0448211 | 28.934 | 197 | 125 | 7 | 258 | 453 | 167 | 349 | 1.43e-11 | 66.2 |
| Msa0643240 | MtrunA17_Chr2g0296571 | 31.169 | 154 | 99 | 4 | 290 | 439 | 194 | 344 | 1.67e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643240 | AT5G60490.1 | 54.000 | 150 | 67 | 2 | 291 | 439 | 39 | 187 | 9.36e-45 | 158 |
| Msa0643240 | AT5G60490.1 | 44.295 | 149 | 63 | 3 | 67 | 195 | 39 | 187 | 1.87e-32 | 125 |
| Msa0643240 | AT5G03170.1 | 47.305 | 167 | 87 | 1 | 284 | 449 | 29 | 195 | 3.83e-44 | 156 |
| Msa0643240 | AT5G03170.1 | 39.665 | 179 | 86 | 3 | 53 | 209 | 22 | 200 | 3.91e-34 | 129 |
| Msa0643240 | AT2G20520.1 | 36.134 | 238 | 130 | 7 | 270 | 504 | 19 | 237 | 4.98e-27 | 109 |
| Msa0643240 | AT2G20520.1 | 34.375 | 192 | 97 | 4 | 60 | 223 | 31 | 221 | 6.25e-22 | 95.5 |
| Msa0643240 | AT5G44130.1 | 36.816 | 201 | 113 | 6 | 290 | 486 | 35 | 225 | 1.32e-26 | 108 |
| Msa0643240 | AT5G44130.1 | 33.333 | 180 | 92 | 5 | 67 | 222 | 36 | 211 | 1.11e-19 | 89.0 |
| Msa0643240 | AT1G03870.1 | 33.333 | 213 | 131 | 5 | 290 | 501 | 38 | 240 | 4.07e-24 | 101 |
| Msa0643240 | AT1G03870.1 | 29.231 | 195 | 112 | 5 | 67 | 236 | 39 | 232 | 1.45e-17 | 82.8 |
| Msa0643240 | AT3G60900.1 | 29.121 | 182 | 124 | 2 | 284 | 465 | 183 | 359 | 3.30e-15 | 78.2 |
| Msa0643240 | AT3G46550.1 | 30.645 | 186 | 115 | 7 | 276 | 451 | 193 | 374 | 9.01e-13 | 70.5 |
| Msa0643240 | AT2G04780.1 | 30.263 | 152 | 100 | 3 | 290 | 439 | 45 | 192 | 6.15e-12 | 66.2 |
| Msa0643240 | AT2G04780.2 | 30.263 | 152 | 100 | 3 | 290 | 439 | 45 | 192 | 6.15e-12 | 66.2 |
Find 116 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATTAGCTGGTGATAAT+TGG | 0.229276 | 4_3:-45835235 | None:intergenic |
| GGTGATGGTGCTGTTGCTTT+TGG | 0.250966 | 4_3:-45832463 | None:intergenic |
| AACATTCAGTTCCACCTTTC+CGG | 0.262448 | 4_3:-45835666 | None:intergenic |
| TACCTTGATCCTGATCATTT+TGG | 0.263017 | 4_3:-45833086 | None:intergenic |
| GGCTCCTAAAGCTGCTAATA+AGG | 0.272377 | 4_3:+45833038 | Msa0643240:CDS |
| CAAGCTCGCGATTTATCATT+TGG | 0.291478 | 4_3:+45832939 | Msa0643240:CDS |
| TCTGTTGAGTCTGGTGATTC+AGG | 0.294510 | 4_3:-45832508 | None:intergenic |
| CCGGATGACAGCGCCTTTGC+AGG | 0.296032 | 4_3:+45835503 | Msa0643240:CDS |
| ATAAATAGCAAGACGTTTAT+CGG | 0.298196 | 4_3:-45835759 | None:intergenic |
| ATCTGATGATGTATCTTTAT+CGG | 0.306273 | 4_3:-45835894 | None:intergenic |
| CGCTACTAAGGCACCTGCTT+TGG | 0.312281 | 4_3:+45832990 | Msa0643240:CDS |
| ACCGGGGAAGGCACCATCTT+TGG | 0.312457 | 4_3:+45835832 | Msa0643240:CDS |
| GCTGTGTCGGTTGAAGGTTC+TGG | 0.334371 | 4_3:-45835857 | None:intergenic |
| CGTCTTGCTATTTATAAAGT+TGG | 0.340020 | 4_3:+45835767 | Msa0643240:CDS |
| CCAACTCAATTCACAACTAT+TGG | 0.341146 | 4_3:+45835448 | Msa0643240:CDS |
| TTCTCCTTATTAGCAGCTTT+AGG | 0.349370 | 4_3:-45833042 | None:intergenic |
| TCAACAGTGCCTGCGGTGTC+AGG | 0.354935 | 4_3:-45835350 | None:intergenic |
| TTACCAGCTATTGTTTGAAC+AGG | 0.356173 | 4_3:-45832811 | None:intergenic |
| GCCTTTGCTGTGTCGGTTGA+AGG | 0.358908 | 4_3:-45835863 | None:intergenic |
| ACATTCAGTTCCACCTTTCC+GGG | 0.360231 | 4_3:-45835665 | None:intergenic |
| CATTACAACAATCCTCAAAA+AGG | 0.367892 | 4_3:+45832546 | Msa0643240:CDS |
| AATGAAGGTACCAATGGTTT+AGG | 0.368336 | 4_3:-45835302 | None:intergenic |
| AGGATTGTTGTAATGTCGTC+AGG | 0.377763 | 4_3:-45832538 | None:intergenic |
| CCTGCAAAGGCGCTGTCATC+CGG | 0.387064 | 4_3:-45835503 | None:intergenic |
| AACCCTGTGAGAACACTTGC+TGG | 0.387148 | 4_3:+45835635 | Msa0643240:CDS |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4_3:+45835787 | Msa0643240:CDS |
| AACAATGTCAGTCTTTCAAC+CGG | 0.416183 | 4_3:+45832874 | Msa0643240:CDS |
| GTTGTTACTGCTTCCGTTGT+GGG | 0.419419 | 4_3:+45832898 | Msa0643240:CDS |
| TCTGATGATGTATCTTTATC+GGG | 0.424899 | 4_3:-45835893 | None:intergenic |
| CTTGAAAATGCTGAATCGTC+TGG | 0.426953 | 4_3:-45832676 | None:intergenic |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.431548 | 4_3:-45835275 | None:intergenic |
| AGCATTAGCTGGTGATAATT+GGG | 0.432747 | 4_3:-45835234 | None:intergenic |
| GGCTCTATCAAGATTGTGTA+TGG | 0.434280 | 4_3:+45835953 | Msa0643240:CDS |
| GCTGGTAGTGTAGGTTGTAT+AGG | 0.438970 | 4_3:-45835257 | None:intergenic |
| TGTATGCCTTCGCCTTTCTC+AGG | 0.442653 | 4_3:-45835385 | None:intergenic |
| AACTCGTGCTGCTGCTGCTA+AGG | 0.446593 | 4_3:+45833017 | Msa0643240:CDS |
| GGGACGGAGTCTGTTGAGTC+TGG | 0.453003 | 4_3:-45832517 | None:intergenic |
| AATGTGGGGACTAATGATTT+TGG | 0.458446 | 4_3:-45832484 | None:intergenic |
| TTAGCAGCAGCAGCACGAGT+TGG | 0.460626 | 4_3:-45833015 | None:intergenic |
| AATCCAACTGAAAACAAGTC+TGG | 0.463708 | 4_3:+45835932 | Msa0643240:CDS |
| GCACGAGTTGGAGCCAAAGC+AGG | 0.464102 | 4_3:-45833003 | None:intergenic |
| GTCCATCGGAAAGAGAGTTA+AGG | 0.464359 | 4_3:-45835541 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.467213 | 4_3:-45835833 | None:intergenic |
| TTTGAGCTCGCTACATATTG+AGG | 0.476279 | 4_3:-45832769 | None:intergenic |
| GGAGCTGCAGCTGGTGTGGT+TGG | 0.478200 | 4_3:-45835281 | None:intergenic |
| CGTTGCTAAGGCACCGGGGA+AGG | 0.485444 | 4_3:+45835820 | Msa0643240:CDS |
| TCGTGATTTCTTCGCTACTA+AGG | 0.488348 | 4_3:+45832978 | Msa0643240:CDS |
| TGATCAAGACCAAAATGATC+AGG | 0.490187 | 4_3:+45833077 | Msa0643240:CDS |
| GTGGTTGGAGCTGGTAGTGT+AGG | 0.493589 | 4_3:-45835266 | None:intergenic |
| AACCCTGTTCAAACAATAGC+TGG | 0.497527 | 4_3:+45832808 | Msa0643240:CDS |
| TTCCTTAACTCTCTTTCCGA+TGG | 0.505029 | 4_3:+45835539 | Msa0643240:CDS |
| GCCTTTGCAGGACTCAAAGC+AGG | 0.505794 | 4_3:+45835515 | Msa0643240:CDS |
| GATGTATCTTTATCGGGTTT+AGG | 0.505916 | 4_3:-45835887 | None:intergenic |
| CAACAGTGCCTGCGGTGTCA+GGG | 0.508035 | 4_3:-45835349 | None:intergenic |
| CCAATAGTTGTGAATTGAGT+TGG | 0.509984 | 4_3:-45835448 | None:intergenic |
| GAAGGTTCTGGCGCCAAAGA+TGG | 0.511510 | 4_3:-45835845 | None:intergenic |
| ATGATTCAGGTGCTTGTGAA+AGG | 0.511644 | 4_3:-45832408 | None:intergenic |
| TTTAGGCGCCTTTGCTGTGT+CGG | 0.515537 | 4_3:-45835870 | None:intergenic |
| GCTCCAGCAAGTGTTCTCAC+AGG | 0.519482 | 4_3:-45835638 | None:intergenic |
| GAAGTGAACACGACAATCAA+TGG | 0.521491 | 4_3:+45835725 | Msa0643240:CDS |
| GGAAGTGTGAACATATCGAC+AGG | 0.523735 | 4_3:+45835701 | Msa0643240:CDS |
| TTGGGATAAAGTAGTGGTGG+TGG | 0.526558 | 4_3:-45835216 | None:intergenic |
| GACCAAAATGATCAGGATCA+AGG | 0.527131 | 4_3:+45833084 | Msa0643240:CDS |
| CTAGGTGACTCTGGTAATGA+AGG | 0.531327 | 4_3:-45835317 | None:intergenic |
| AGTGCCTGCGGTGTCAGGGG+TGG | 0.531927 | 4_3:-45835345 | None:intergenic |
| GTCTAAGGAGTTAAGGAACC+CGG | 0.532885 | 4_3:-45832707 | None:intergenic |
| GCAGGCACTGTTGACATTGT+CGG | 0.533562 | 4_3:+45835359 | Msa0643240:CDS |
| AGTTAAGGAACCCGGCTTTG+AGG | 0.535555 | 4_3:-45832699 | None:intergenic |
| TGGATTAACGATTCTTGCAC+CGG | 0.540187 | 4_3:+45835484 | Msa0643240:CDS |
| GGTTGTTACTGCTTCCGTTG+TGG | 0.541810 | 4_3:+45832897 | Msa0643240:CDS |
| AGCTGCAGCTCCTAAACCAT+TGG | 0.544279 | 4_3:+45835292 | Msa0643240:CDS |
| GTGGAATCACTAGGTGACTC+TGG | 0.548332 | 4_3:-45835326 | None:intergenic |
| AGCAAGTGTTCTCACAGGGT+TGG | 0.556533 | 4_3:-45835633 | None:intergenic |
| GAACTGAATGTTGTGAGTTA+CGG | 0.564207 | 4_3:+45835677 | Msa0643240:CDS |
| CATTGTCGGAATCCTGAGAA+AGG | 0.566305 | 4_3:+45835373 | Msa0643240:CDS |
| GCAACGGAAAAGAAATCCAT+AGG | 0.570178 | 4_3:-45835803 | None:intergenic |
| GGTTGTATAGGAGCATTAGC+TGG | 0.571828 | 4_3:-45835245 | None:intergenic |
| CTCCAGCAAGTGTTCTCACA+GGG | 0.574947 | 4_3:-45835637 | None:intergenic |
| GTCTGGTGATTCAGGTAATG+TGG | 0.576222 | 4_3:-45832500 | None:intergenic |
| GATTCCACCCCTGACACCGC+AGG | 0.578533 | 4_3:+45835341 | Msa0643240:CDS |
| TGCTGGAGCTAAACCCGGAA+AGG | 0.580904 | 4_3:+45835652 | Msa0643240:CDS |
| TGATTCAGGTGCTTGTGAAA+GGG | 0.580955 | 4_3:-45832407 | None:intergenic |
| TACATCATCAGATTCGTCGC+AGG | 0.582113 | 4_3:+45835904 | Msa0643240:CDS |
| GTGTCAGGGGTGGAATCACT+AGG | 0.582776 | 4_3:-45835335 | None:intergenic |
| TCAAGATTGTGTATGGAAAG+TGG | 0.583724 | 4_3:+45835960 | Msa0643240:CDS |
| ATGCTGAATCGTCTGGCGCA+AGG | 0.583853 | 4_3:-45832669 | None:intergenic |
| TCTGGTGATTCAGGTAATGT+GGG | 0.585032 | 4_3:-45832499 | None:intergenic |
| TCTGGTAATGAAGGTACCAA+TGG | 0.585762 | 4_3:-45835308 | None:intergenic |
| TATGGAAAGTGGATGTCACT+TGG | 0.586667 | 4_3:+45835971 | Msa0643240:CDS |
| AACAGTGCCTGCGGTGTCAG+GGG | 0.587591 | 4_3:-45835348 | None:intergenic |
| TCCTGCTTTGAGTCCTGCAA+AGG | 0.587782 | 4_3:-45835516 | None:intergenic |
| CTTCCCCGGTGCCTTAGCAA+CGG | 0.588968 | 4_3:-45835819 | None:intergenic |
| ACACTTGCTGGAGCTAAACC+CGG | 0.593390 | 4_3:+45835647 | Msa0643240:CDS |
| TGTTGTAATGTCGTCAGGGA+CGG | 0.593408 | 4_3:-45832533 | None:intergenic |
| AATGGTTTAGGAGCTGCAGC+TGG | 0.597225 | 4_3:-45835290 | None:intergenic |
| TTTAGGAGCTGCAGCTGGTG+TGG | 0.597546 | 4_3:-45835285 | None:intergenic |
| CGGAATCCTGAGAAAGGCGA+AGG | 0.598403 | 4_3:+45835379 | Msa0643240:CDS |
| ACAATGTCAGTCTTTCAACC+GGG | 0.598947 | 4_3:+45832875 | Msa0643240:CDS |
| TACCAGCTATTGTTTGAACA+GGG | 0.607680 | 4_3:-45832810 | None:intergenic |
| ACCTTCAACCGACACAGCAA+AGG | 0.610444 | 4_3:+45835862 | Msa0643240:CDS |
| TGCTTGTGAAAGGGATAATG+TGG | 0.613574 | 4_3:-45832398 | None:intergenic |
| GACAATGTCAACAGTGCCTG+CGG | 0.617535 | 4_3:-45835357 | None:intergenic |
| TGGAGCTAAACCCGGAAAGG+TGG | 0.639885 | 4_3:+45835655 | Msa0643240:CDS |
| CTGAATGTTGTGAGTTACGG+AGG | 0.642257 | 4_3:+45835680 | Msa0643240:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4_3:-45835586 | None:intergenic |
| GGATTGTTGTAATGTCGTCA+GGG | 0.651454 | 4_3:-45832537 | None:intergenic |
| TAATTGGGATAAAGTAGTGG+TGG | 0.657413 | 4_3:-45835219 | None:intergenic |
| TGATAATTGGGATAAAGTAG+TGG | 0.662459 | 4_3:-45835222 | None:intergenic |
| CAATGTCAGTCTTTCAACCG+GGG | 0.675430 | 4_3:+45832876 | Msa0643240:CDS |
| AGTGTACACAACACCCACAA+CGG | 0.678067 | 4_3:-45832911 | None:intergenic |
| CTGGTGATTCAGGTAATGTG+GGG | 0.679078 | 4_3:-45832498 | None:intergenic |
| AACGGAAGCAGTAACAACCC+CGG | 0.701266 | 4_3:-45832893 | None:intergenic |
| GAAGTGTGAACATATCGACA+GGG | 0.704878 | 4_3:+45835702 | Msa0643240:CDS |
| AAGTGTGAACATATCGACAG+GGG | 0.734548 | 4_3:+45835703 | Msa0643240:CDS |
| TTTCCGTTGCTAAGGCACCG+GGG | 0.751333 | 4_3:+45835816 | Msa0643240:CDS |
| TTAGTAGCGAAGAAATCACG+AGG | 0.758452 | 4_3:-45832976 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAAAATCTATAATTTT+TGG | + | chr4_3:45833923-45833942 | Msa0643240:intron | 10.0% |
| !!! | TGAAAAAATCTATAATTTTT+GGG | + | chr4_3:45833924-45833943 | Msa0643240:intron | 10.0% |
| !!! | AATTTTATGTACAAAAAAAT+AGG | + | chr4_3:45834624-45834643 | Msa0643240:intron | 10.0% |
| !!! | TTTTCATTTGAATTTTTCTA+TGG | + | chr4_3:45833260-45833279 | Msa0643240:intron | 15.0% |
| !! | TTGTATAAAAAAGTTTGATT+TGG | + | chr4_3:45833323-45833342 | Msa0643240:intron | 15.0% |
| !!! | GATGATATTTCAAATTTTAT+TGG | + | chr4_3:45833345-45833364 | Msa0643240:intron | 15.0% |
| !! | TTGAATTAACTTATCATAAA+AGG | + | chr4_3:45833610-45833629 | Msa0643240:intron | 15.0% |
| !!! | TGGTAATTGAAAATTTTAAA+GGG | + | chr4_3:45834028-45834047 | Msa0643240:intron | 15.0% |
| !!! | AAGAAGATTAAATATGTTTT+TGG | - | chr4_3:45834115-45834134 | None:intergenic | 15.0% |
| !! | TAGAATAATCTAAGAATATT+TGG | + | chr4_3:45834270-45834289 | Msa0643240:intron | 15.0% |
| !! | AAACATTAATTTATCAAAAC+TGG | - | chr4_3:45834416-45834435 | None:intergenic | 15.0% |
| !!! | TGATTTGTTAACTTAAATTT+TGG | - | chr4_3:45834966-45834985 | None:intergenic | 15.0% |
| !!! | TTTTTGTTAAAGAAAGTTTT+AGG | - | chr4_3:45835129-45835148 | None:intergenic | 15.0% |
| !! | TATACAATAAAAATGACACA+AGG | - | chr4_3:45833310-45833329 | None:intergenic | 20.0% |
| !! | CATGAATTGATTGAAAAATA+AGG | + | chr4_3:45833997-45834016 | Msa0643240:intron | 20.0% |
| !!! | AAATTTTCAATTACCACTTT+TGG | - | chr4_3:45834024-45834043 | None:intergenic | 20.0% |
| !!! | GTGGTAATTGAAAATTTTAA+AGG | + | chr4_3:45834027-45834046 | Msa0643240:intron | 20.0% |
| !!! | TGAAAAGTTGGTATATTTAT+AGG | + | chr4_3:45834087-45834106 | Msa0643240:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | + | chr4_3:45834088-45834107 | Msa0643240:intron | 20.0% |
| !! | AAAAAAAAAAGAGCAGATTA+TGG | + | chr4_3:45834379-45834398 | Msa0643240:intron | 20.0% |
| !!! | TGTGTTTCTTTTTTTCTTTT+TGG | - | chr4_3:45834782-45834801 | None:intergenic | 20.0% |
| !! | ATGATATCATTTATCTGAAA+AGG | - | chr4_3:45834902-45834921 | None:intergenic | 20.0% |
| !! | AAGTTAACAAATCACAATTA+AGG | + | chr4_3:45834972-45834991 | Msa0643240:intron | 20.0% |
| !! | AGTTAACAAATCACAATTAA+GGG | + | chr4_3:45834973-45834992 | Msa0643240:intron | 20.0% |
| !!! | AGATTGATTTCTAATCATTT+TGG | - | chr4_3:45835153-45835172 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTTGGAGATTTTG+GGG | - | chr4_3:45832434-45832453 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTTGGAGATTTT+GGG | - | chr4_3:45832435-45832454 | None:intergenic | 25.0% |
| !!! | TCATGATTTCTGTTGTTTTT+AGG | - | chr4_3:45832600-45832619 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGTTTTCGTCTA+AGG | - | chr4_3:45832725-45832744 | None:intergenic | 25.0% |
| ! | ATTAAAATGCAACTTCCAAA+TGG | - | chr4_3:45833202-45833221 | None:intergenic | 25.0% |
| ! | AATGAAAAGCAACAAAAAAG+TGG | - | chr4_3:45833248-45833267 | None:intergenic | 25.0% |
| !! | AGTTAGCTTATAACTTATAG+TGG | + | chr4_3:45833415-45833434 | Msa0643240:intron | 25.0% |
| ! | TTGATTGAATTTGTAGTGTT+TGG | + | chr4_3:45833447-45833466 | Msa0643240:intron | 25.0% |
| ! | GTAGTGTTTGGTAAAATTAA+CGG | + | chr4_3:45833459-45833478 | Msa0643240:intron | 25.0% |
| ! | ATTACTTTATCATGAGCTTA+TGG | - | chr4_3:45833657-45833676 | None:intergenic | 25.0% |
| ! | ATAAGCTCATGATAAAGTAA+TGG | + | chr4_3:45833656-45833675 | Msa0643240:intron | 25.0% |
| ! | CTTCTTCAATAATAATGCTA+AGG | - | chr4_3:45833832-45833851 | None:intergenic | 25.0% |
| !! | AAATCGAAGGAAAATTTTAG+AGG | + | chr4_3:45834056-45834075 | Msa0643240:intron | 25.0% |
| !! | AATCGAAGGAAAATTTTAGA+GGG | + | chr4_3:45834057-45834076 | Msa0643240:intron | 25.0% |
| ! | ATATTTGGATGATATGACAA+AGG | + | chr4_3:45834285-45834304 | Msa0643240:intron | 25.0% |
| !! | CTCAAAATCTTTGTTTAAGT+TGG | - | chr4_3:45834318-45834337 | None:intergenic | 25.0% |
| !!! | CTTAAACAAAGATTTTGAGT+TGG | + | chr4_3:45834319-45834338 | Msa0643240:intron | 25.0% |
| ! | ACTTGCATTATTCTTATGAT+TGG | - | chr4_3:45834348-45834367 | None:intergenic | 25.0% |
| !!! | TTACCTTTTTTTAAGAGAAG+AGG | + | chr4_3:45834518-45834537 | Msa0643240:intron | 25.0% |
| ! | TTTCCTCTTCTCTTAAAAAA+AGG | - | chr4_3:45834524-45834543 | None:intergenic | 25.0% |
| !! | ATTTTATATGCAGACATCAA+TGG | + | chr4_3:45834672-45834691 | Msa0643240:intron | 25.0% |
| !!! | TATTTTGAGCTGAAAATAGA+TGG | + | chr4_3:45834714-45834733 | Msa0643240:intron | 25.0% |
| ! | ATATCATTTATCTGAAAAGG+AGG | - | chr4_3:45834899-45834918 | None:intergenic | 25.0% |
| !! | TTAAGGTGTTACATCAATTA+AGG | - | chr4_3:45834929-45834948 | None:intergenic | 25.0% |
| !! | ATACATAGTCTGAAATAACA+TGG | - | chr4_3:45835589-45835608 | None:intergenic | 25.0% |
| ! | ATAAATAGCAAGACGTTTAT+CGG | - | chr4_3:45835762-45835781 | None:intergenic | 25.0% |
| !! | ATCTGATGATGTATCTTTAT+CGG | - | chr4_3:45835897-45835916 | None:intergenic | 25.0% |
| !!! | GGTGTTTTTTTTGGAGATTT+TGG | - | chr4_3:45832436-45832455 | None:intergenic | 30.0% |
| CATTACAACAATCCTCAAAA+AGG | + | chr4_3:45832546-45832565 | Msa0643240:CDS | 30.0% | |
| !!! | TTTCTGTTGTTTTTAGGAGA+CGG | - | chr4_3:45832594-45832613 | None:intergenic | 30.0% |
| ! | AATGCTTTGATGATACATGT+GGG | - | chr4_3:45833763-45833782 | None:intergenic | 30.0% |
| AGATCTTAAACAACTATGCA+TGG | + | chr4_3:45833790-45833809 | Msa0643240:intron | 30.0% | |
| TTAAACAACTATGCATGGTA+TGG | + | chr4_3:45833795-45833814 | Msa0643240:intron | 30.0% | |
| TGAAAAATAAGGACCAAAAG+TGG | + | chr4_3:45834008-45834027 | Msa0643240:intron | 30.0% | |
| TTAAAGGGACTAAAAATCGA+AGG | + | chr4_3:45834043-45834062 | Msa0643240:intron | 30.0% | |
| AAAAAAGAGCAGATTATGGT+CGG | + | chr4_3:45834383-45834402 | Msa0643240:intron | 30.0% | |
| ! | CTATTTTCAGCTCAAAATAG+TGG | - | chr4_3:45834713-45834732 | None:intergenic | 30.0% |
| ACACATCCATTCATCTAATT+TGG | + | chr4_3:45834811-45834830 | Msa0643240:intron | 30.0% | |
| AAGGAACCAAATTAGATGAA+TGG | - | chr4_3:45834820-45834839 | None:intergenic | 30.0% | |
| AAAGTGAAAGCTTAGTTGTA+AGG | - | chr4_3:45834839-45834858 | None:intergenic | 30.0% | |
| TTTATCTGAAAAGGAGGTTA+TGG | - | chr4_3:45834893-45834912 | None:intergenic | 30.0% | |
| TGGTATCTAGCATGAAATTA+AGG | - | chr4_3:45834946-45834965 | None:intergenic | 30.0% | |
| ! | TAAGGATTAGGCTTTTATAG+AGG | - | chr4_3:45835040-45835059 | None:intergenic | 30.0% |
| !! | CATTGATAATGCTAAGGATT+AGG | - | chr4_3:45835052-45835071 | None:intergenic | 30.0% |
| !! | TTGATGCATTGATAATGCTA+AGG | - | chr4_3:45835058-45835077 | None:intergenic | 30.0% |
| TGATATTGAAGTTGTGAAGA+TGG | - | chr4_3:45835106-45835125 | None:intergenic | 30.0% | |
| TGATAATTGGGATAAAGTAG+TGG | - | chr4_3:45835225-45835244 | None:intergenic | 30.0% | |
| !! | CGTCTTGCTATTTATAAAGT+TGG | + | chr4_3:45835767-45835786 | Msa0643240:CDS | 30.0% |
| ! | TCTGATGATGTATCTTTATC+GGG | - | chr4_3:45835896-45835915 | None:intergenic | 30.0% |
| ! | AATGTGGGGACTAATGATTT+TGG | - | chr4_3:45832487-45832506 | None:intergenic | 35.0% |
| ! | AGAATGTTTTCGCCTTTTTG+AGG | - | chr4_3:45832561-45832580 | None:intergenic | 35.0% |
| !!! | TTGTTTTTAGGAGACGGATT+AGG | - | chr4_3:45832588-45832607 | None:intergenic | 35.0% |
| ! | TGTTTTCGTCTAAGGAGTTA+AGG | - | chr4_3:45832717-45832736 | None:intergenic | 35.0% |
| TACCAGCTATTGTTTGAACA+GGG | - | chr4_3:45832813-45832832 | None:intergenic | 35.0% | |
| TTACCAGCTATTGTTTGAAC+AGG | - | chr4_3:45832814-45832833 | None:intergenic | 35.0% | |
| CCTGATGCATAAACATTAAG+TGG | - | chr4_3:45832853-45832872 | None:intergenic | 35.0% | |
| CCACTTAATGTTTATGCATC+AGG | + | chr4_3:45832850-45832869 | Msa0643240:intron | 35.0% | |
| AACAATGTCAGTCTTTCAAC+CGG | + | chr4_3:45832874-45832893 | Msa0643240:CDS | 35.0% | |
| TTCTCCTTATTAGCAGCTTT+AGG | - | chr4_3:45833045-45833064 | None:intergenic | 35.0% | |
| TGATCAAGACCAAAATGATC+AGG | + | chr4_3:45833077-45833096 | Msa0643240:CDS | 35.0% | |
| ! | TACCTTGATCCTGATCATTT+TGG | - | chr4_3:45833089-45833108 | None:intergenic | 35.0% |
| !! | TTGTTGCTGTAGCATTGATA+TGG | + | chr4_3:45833160-45833179 | Msa0643240:intron | 35.0% |
| ATTGATATGGAGTTGACGAA+TGG | + | chr4_3:45833173-45833192 | Msa0643240:intron | 35.0% | |
| AAAGCAACAAAAAAGTGGCA+TGG | - | chr4_3:45833243-45833262 | None:intergenic | 35.0% | |
| ATGATACATGTGGGTCTATT+TGG | - | chr4_3:45833754-45833773 | None:intergenic | 35.0% | |
| ! | CAATGCTTTGATGATACATG+TGG | - | chr4_3:45833764-45833783 | None:intergenic | 35.0% |
| GAGGGACTTAAATGAAAAGT+TGG | + | chr4_3:45834075-45834094 | Msa0643240:intron | 35.0% | |
| !! | ATGCGAGTTCTAAAGAAAAG+AGG | + | chr4_3:45834197-45834216 | Msa0643240:intron | 35.0% |
| !! | CTAAAGAAAAGAGGTATCCA+TGG | + | chr4_3:45834206-45834225 | Msa0643240:intron | 35.0% |
| !! | TCAGCTCAAAATAGTGGATT+TGG | - | chr4_3:45834707-45834726 | None:intergenic | 35.0% |
| !! | TGTAATGTGTTGCTTTCAGT+TGG | - | chr4_3:45834754-45834773 | None:intergenic | 35.0% |
| !! | TTAGGTGAAAGGCTTTGTTA+TGG | - | chr4_3:45835000-45835019 | None:intergenic | 35.0% |
| GGATATGACATTTAGGTGAA+AGG | - | chr4_3:45835011-45835030 | None:intergenic | 35.0% | |
| ! | ATTAGGCTTTTATAGAGGCT+TGG | - | chr4_3:45835035-45835054 | None:intergenic | 35.0% |
| ATTGAAGTTGTGAAGATGGT+AGG | - | chr4_3:45835102-45835121 | None:intergenic | 35.0% | |
| TAATTGGGATAAAGTAGTGG+TGG | - | chr4_3:45835222-45835241 | None:intergenic | 35.0% | |
| AGCATTAGCTGGTGATAATT+GGG | - | chr4_3:45835237-45835256 | None:intergenic | 35.0% | |
| !! | AATGAAGGTACCAATGGTTT+AGG | - | chr4_3:45835305-45835324 | None:intergenic | 35.0% |
| CCAATAGTTGTGAATTGAGT+TGG | - | chr4_3:45835451-45835470 | None:intergenic | 35.0% | |
| CCAACTCAATTCACAACTAT+TGG | + | chr4_3:45835448-45835467 | Msa0643240:CDS | 35.0% | |
| ! | CAACTATTGGCTACAAAAAC+AGG | + | chr4_3:45835461-45835480 | Msa0643240:CDS | 35.0% |
| GAACTGAATGTTGTGAGTTA+CGG | + | chr4_3:45835677-45835696 | Msa0643240:CDS | 35.0% | |
| GATGTATCTTTATCGGGTTT+AGG | - | chr4_3:45835890-45835909 | None:intergenic | 35.0% | |
| AATCCAACTGAAAACAAGTC+TGG | + | chr4_3:45835932-45835951 | Msa0643240:CDS | 35.0% | |
| TCAAGATTGTGTATGGAAAG+TGG | + | chr4_3:45835960-45835979 | Msa0643240:CDS | 35.0% | |
| TGCTTGTGAAAGGGATAATG+TGG | - | chr4_3:45832401-45832420 | None:intergenic | 40.0% | |
| TGATTCAGGTGCTTGTGAAA+GGG | - | chr4_3:45832410-45832429 | None:intergenic | 40.0% | |
| ATGATTCAGGTGCTTGTGAA+AGG | - | chr4_3:45832411-45832430 | None:intergenic | 40.0% | |
| !! | GGGACTAATGATTTTGGTGA+TGG | - | chr4_3:45832481-45832500 | None:intergenic | 40.0% |
| TCTGGTGATTCAGGTAATGT+GGG | - | chr4_3:45832502-45832521 | None:intergenic | 40.0% | |
| GGATTGTTGTAATGTCGTCA+GGG | - | chr4_3:45832540-45832559 | None:intergenic | 40.0% | |
| AGGATTGTTGTAATGTCGTC+AGG | - | chr4_3:45832541-45832560 | None:intergenic | 40.0% | |
| !!! | TTTTAGGAGACGGATTAGGA+CGG | - | chr4_3:45832584-45832603 | None:intergenic | 40.0% |
| CAGCTCATCACAGCAAAAAA+CGG | + | chr4_3:45832634-45832653 | Msa0643240:CDS | 40.0% | |
| CTTGAAAATGCTGAATCGTC+TGG | - | chr4_3:45832679-45832698 | None:intergenic | 40.0% | |
| TTTGAGCTCGCTACATATTG+AGG | - | chr4_3:45832772-45832791 | None:intergenic | 40.0% | |
| AACCCTGTTCAAACAATAGC+TGG | + | chr4_3:45832808-45832827 | Msa0643240:CDS | 40.0% | |
| !! | CATTAAGTGGAAGCCTTGTT+GGG | - | chr4_3:45832840-45832859 | None:intergenic | 40.0% |
| ! | ACATTAAGTGGAAGCCTTGT+TGG | - | chr4_3:45832841-45832860 | None:intergenic | 40.0% |
| ACAATGTCAGTCTTTCAACC+GGG | + | chr4_3:45832875-45832894 | Msa0643240:CDS | 40.0% | |
| CAAGCTCGCGATTTATCATT+TGG | + | chr4_3:45832939-45832958 | Msa0643240:CDS | 40.0% | |
| TTAGTAGCGAAGAAATCACG+AGG | - | chr4_3:45832979-45832998 | None:intergenic | 40.0% | |
| TCGTGATTTCTTCGCTACTA+AGG | + | chr4_3:45832978-45832997 | Msa0643240:CDS | 40.0% | |
| GACCAAAATGATCAGGATCA+AGG | + | chr4_3:45833084-45833103 | Msa0643240:CDS | 40.0% | |
| GATCAGGATCAAGGTAAATC+TGG | + | chr4_3:45833093-45833112 | Msa0643240:intron | 40.0% | |
| GTGAGATTGTGTGGAATTCT+TGG | + | chr4_3:45833120-45833139 | Msa0643240:intron | 40.0% | |
| GTTGACGAATGGTTTCCATT+TGG | + | chr4_3:45833184-45833203 | Msa0643240:intron | 40.0% | |
| TCTGAAAAGGAGGTTATGGT+GGG | - | chr4_3:45834889-45834908 | None:intergenic | 40.0% | |
| ATCTGAAAAGGAGGTTATGG+TGG | - | chr4_3:45834890-45834909 | None:intergenic | 40.0% | |
| GCTTGGAGGATATGACATTT+AGG | - | chr4_3:45835018-45835037 | None:intergenic | 40.0% | |
| AACTAGTAGTGCAAGTGAGA+AGG | - | chr4_3:45835183-45835202 | None:intergenic | 40.0% | |
| GAGCATTAGCTGGTGATAAT+TGG | - | chr4_3:45835238-45835257 | None:intergenic | 40.0% | |
| !! | TCTGGTAATGAAGGTACCAA+TGG | - | chr4_3:45835311-45835330 | None:intergenic | 40.0% |
| ! | CTATTGGCTACAAAAACAGG+TGG | + | chr4_3:45835464-45835483 | Msa0643240:CDS | 40.0% |
| TGGATTAACGATTCTTGCAC+CGG | + | chr4_3:45835484-45835503 | Msa0643240:CDS | 40.0% | |
| TTCCTTAACTCTCTTTCCGA+TGG | + | chr4_3:45835539-45835558 | Msa0643240:CDS | 40.0% | |
| AACATTCAGTTCCACCTTTC+CGG | - | chr4_3:45835669-45835688 | None:intergenic | 40.0% | |
| GAAGTGTGAACATATCGACA+GGG | + | chr4_3:45835702-45835721 | Msa0643240:CDS | 40.0% | |
| AAGTGTGAACATATCGACAG+GGG | + | chr4_3:45835703-45835722 | Msa0643240:CDS | 40.0% | |
| GAAGTGAACACGACAATCAA+TGG | + | chr4_3:45835725-45835744 | Msa0643240:CDS | 40.0% | |
| GCAACGGAAAAGAAATCCAT+AGG | - | chr4_3:45835806-45835825 | None:intergenic | 40.0% | |
| ! | GGATTTCTTTTCCGTTGCTA+AGG | + | chr4_3:45835808-45835827 | Msa0643240:CDS | 40.0% |
| GGCTCTATCAAGATTGTGTA+TGG | + | chr4_3:45835953-45835972 | Msa0643240:CDS | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | + | chr4_3:45835971-45835990 | Msa0643240:CDS | 40.0% | |
| !! | GGAGATTTTGGGGATGATTC+AGG | - | chr4_3:45832424-45832443 | None:intergenic | 45.0% |
| !!! | TGATGGTGCTGTTGCTTTTG+GGG | - | chr4_3:45832464-45832483 | None:intergenic | 45.0% |
| !!! | GTGATGGTGCTGTTGCTTTT+GGG | - | chr4_3:45832465-45832484 | None:intergenic | 45.0% |
| CTGGTGATTCAGGTAATGTG+GGG | - | chr4_3:45832501-45832520 | None:intergenic | 45.0% | |
| GTCTGGTGATTCAGGTAATG+TGG | - | chr4_3:45832503-45832522 | None:intergenic | 45.0% | |
| TCTGTTGAGTCTGGTGATTC+AGG | - | chr4_3:45832511-45832530 | None:intergenic | 45.0% | |
| TGTTGTAATGTCGTCAGGGA+CGG | - | chr4_3:45832536-45832555 | None:intergenic | 45.0% | |
| CTCATCACAGCAAAAAACGG+CGG | + | chr4_3:45832637-45832656 | Msa0643240:CDS | 45.0% | |
| !! | GCATTTTCAAGCCTCAAAGC+CGG | + | chr4_3:45832688-45832707 | Msa0643240:CDS | 45.0% |
| !! | CATTTTCAAGCCTCAAAGCC+GGG | + | chr4_3:45832689-45832708 | Msa0643240:CDS | 45.0% |
| GTCTAAGGAGTTAAGGAACC+CGG | - | chr4_3:45832710-45832729 | None:intergenic | 45.0% | |
| TAGCTGGTAAAGACCCAACA+AGG | + | chr4_3:45832824-45832843 | Msa0643240:intron | 45.0% | |
| CAATGTCAGTCTTTCAACCG+GGG | + | chr4_3:45832876-45832895 | Msa0643240:CDS | 45.0% | |
| GTTGTTACTGCTTCCGTTGT+GGG | + | chr4_3:45832898-45832917 | Msa0643240:CDS | 45.0% | |
| AGTGTACACAACACCCACAA+CGG | - | chr4_3:45832914-45832933 | None:intergenic | 45.0% | |
| GGCTCCTAAAGCTGCTAATA+AGG | + | chr4_3:45833038-45833057 | Msa0643240:CDS | 45.0% | |
| TCGAGATGCGTTGAATACCA+TGG | - | chr4_3:45834226-45834245 | None:intergenic | 45.0% | |
| CTGAAAAGGAGGTTATGGTG+GGG | - | chr4_3:45834888-45834907 | None:intergenic | 45.0% | |
| ! | AGGCTTTTATAGAGGCTTGG+AGG | - | chr4_3:45835032-45835051 | None:intergenic | 45.0% |
| TTGGGATAAAGTAGTGGTGG+TGG | - | chr4_3:45835219-45835238 | None:intergenic | 45.0% | |
| !! | GGTTGTATAGGAGCATTAGC+TGG | - | chr4_3:45835248-45835267 | None:intergenic | 45.0% |
| ! | GCTGGTAGTGTAGGTTGTAT+AGG | - | chr4_3:45835260-45835279 | None:intergenic | 45.0% |
| ! | CTAGGTGACTCTGGTAATGA+AGG | - | chr4_3:45835320-45835339 | None:intergenic | 45.0% |
| CATTGTCGGAATCCTGAGAA+AGG | + | chr4_3:45835373-45835392 | Msa0643240:CDS | 45.0% | |
| GTCCATCGGAAAGAGAGTTA+AGG | - | chr4_3:45835544-45835563 | None:intergenic | 45.0% | |
| ! | CAACTCGAGCTTTTGTCCAT+CGG | - | chr4_3:45835558-45835577 | None:intergenic | 45.0% |
| ACATTCAGTTCCACCTTTCC+GGG | - | chr4_3:45835668-45835687 | None:intergenic | 45.0% | |
| CTGAATGTTGTGAGTTACGG+AGG | + | chr4_3:45835680-45835699 | Msa0643240:CDS | 45.0% | |
| ! | GGAAGTGTGAACATATCGAC+AGG | + | chr4_3:45835701-45835720 | Msa0643240:CDS | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | + | chr4_3:45835787-45835806 | Msa0643240:CDS | 45.0% |
| TACATCATCAGATTCGTCGC+AGG | + | chr4_3:45835904-45835923 | Msa0643240:CDS | 45.0% | |
| !! | GAGCCAGACTTGTTTTCAGT+TGG | - | chr4_3:45835938-45835957 | None:intergenic | 45.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr4_3:45833871-45833890 | Msa0643240:intron | 5.0% |
| !!! | ATAATATACTTTTAATAAAA+TGG | - | chr4_3:45834179-45834198 | None:intergenic | 5.0% |
| !!! | GGGGTAGGGGGTGTTTTTTT+TGG | - | chr4_3:45832445-45832464 | None:intergenic | 50.0% |
| !!! | TGCTGTTGCTTTTGGGGTAG+GGG | - | chr4_3:45832458-45832477 | None:intergenic | 50.0% |
| !!! | GTGCTGTTGCTTTTGGGGTA+GGG | - | chr4_3:45832459-45832478 | None:intergenic | 50.0% |
| !!! | GGTGATGGTGCTGTTGCTTT+TGG | - | chr4_3:45832466-45832485 | None:intergenic | 50.0% |
| AGTTAAGGAACCCGGCTTTG+AGG | - | chr4_3:45832702-45832721 | None:intergenic | 50.0% | |
| AACGGAAGCAGTAACAACCC+CGG | - | chr4_3:45832896-45832915 | None:intergenic | 50.0% | |
| GGTTGTTACTGCTTCCGTTG+TGG | + | chr4_3:45832897-45832916 | Msa0643240:CDS | 50.0% | |
| ! | TCTGGAGCAGTGAGATTGTG+TGG | + | chr4_3:45833111-45833130 | Msa0643240:intron | 50.0% |
| AATGGTTTAGGAGCTGCAGC+TGG | - | chr4_3:45835293-45835312 | None:intergenic | 50.0% | |
| AGCTGCAGCTCCTAAACCAT+TGG | + | chr4_3:45835292-45835311 | Msa0643240:CDS | 50.0% | |
| GTGGAATCACTAGGTGACTC+TGG | - | chr4_3:45835329-45835348 | None:intergenic | 50.0% | |
| GACAATGTCAACAGTGCCTG+CGG | - | chr4_3:45835360-45835379 | None:intergenic | 50.0% | |
| ! | GCAGGCACTGTTGACATTGT+CGG | + | chr4_3:45835359-45835378 | Msa0643240:CDS | 50.0% |
| TGTATGCCTTCGCCTTTCTC+AGG | - | chr4_3:45835388-45835407 | None:intergenic | 50.0% | |
| ! | TCCTGCTTTGAGTCCTGCAA+AGG | - | chr4_3:45835519-45835538 | None:intergenic | 50.0% |
| AGCAAGTGTTCTCACAGGGT+TGG | - | chr4_3:45835636-45835655 | None:intergenic | 50.0% | |
| AACCCTGTGAGAACACTTGC+TGG | + | chr4_3:45835635-45835654 | Msa0643240:CDS | 50.0% | |
| CTCCAGCAAGTGTTCTCACA+GGG | - | chr4_3:45835640-45835659 | None:intergenic | 50.0% | |
| ! | ACACTTGCTGGAGCTAAACC+CGG | + | chr4_3:45835647-45835666 | Msa0643240:CDS | 50.0% |
| ! | CTTTTCCGTTGCTAAGGCAC+CGG | + | chr4_3:45835814-45835833 | Msa0643240:CDS | 50.0% |
| !! | TTTTCCGTTGCTAAGGCACC+GGG | + | chr4_3:45835815-45835834 | Msa0643240:CDS | 50.0% |
| ACCTTCAACCGACACAGCAA+AGG | + | chr4_3:45835862-45835881 | Msa0643240:CDS | 50.0% | |
| ! | TTTAGGCGCCTTTGCTGTGT+CGG | - | chr4_3:45835873-45835892 | None:intergenic | 50.0% |
| !!! | GCTGTTGCTTTTGGGGTAGG+GGG | - | chr4_3:45832457-45832476 | None:intergenic | 55.0% |
| !!! | GGTGCTGTTGCTTTTGGGGT+AGG | - | chr4_3:45832460-45832479 | None:intergenic | 55.0% |
| ATGCTGAATCGTCTGGCGCA+AGG | - | chr4_3:45832672-45832691 | None:intergenic | 55.0% | |
| ! | CGCTACTAAGGCACCTGCTT+TGG | + | chr4_3:45832990-45833009 | Msa0643240:CDS | 55.0% |
| TTAGCAGCAGCAGCACGAGT+TGG | - | chr4_3:45833018-45833037 | None:intergenic | 55.0% | |
| ! | AACTCGTGCTGCTGCTGCTA+AGG | + | chr4_3:45833017-45833036 | Msa0643240:CDS | 55.0% |
| ! | GTGGTTGGAGCTGGTAGTGT+AGG | - | chr4_3:45835269-45835288 | None:intergenic | 55.0% |
| TTTAGGAGCTGCAGCTGGTG+TGG | - | chr4_3:45835288-45835307 | None:intergenic | 55.0% | |
| GTGTCAGGGGTGGAATCACT+AGG | - | chr4_3:45835338-45835357 | None:intergenic | 55.0% | |
| CGGAATCCTGAGAAAGGCGA+AGG | + | chr4_3:45835379-45835398 | Msa0643240:CDS | 55.0% | |
| GCCTTTGCAGGACTCAAAGC+AGG | + | chr4_3:45835515-45835534 | Msa0643240:CDS | 55.0% | |
| GCTCCAGCAAGTGTTCTCAC+AGG | - | chr4_3:45835641-45835660 | None:intergenic | 55.0% | |
| TGCTGGAGCTAAACCCGGAA+AGG | + | chr4_3:45835652-45835671 | Msa0643240:CDS | 55.0% | |
| TGGAGCTAAACCCGGAAAGG+TGG | + | chr4_3:45835655-45835674 | Msa0643240:CDS | 55.0% | |
| !! | TTTCCGTTGCTAAGGCACCG+GGG | + | chr4_3:45835816-45835835 | Msa0643240:CDS | 55.0% |
| ! | GAAGGTTCTGGCGCCAAAGA+TGG | - | chr4_3:45835848-45835867 | None:intergenic | 55.0% |
| !! | GCTGTGTCGGTTGAAGGTTC+TGG | - | chr4_3:45835860-45835879 | None:intergenic | 55.0% |
| !! | GCCTTTGCTGTGTCGGTTGA+AGG | - | chr4_3:45835866-45835885 | None:intergenic | 55.0% |
| GGGACGGAGTCTGTTGAGTC+TGG | - | chr4_3:45832520-45832539 | None:intergenic | 60.0% | |
| ! | GCACGAGTTGGAGCCAAAGC+AGG | - | chr4_3:45833006-45833025 | None:intergenic | 60.0% |
| ! | AACAGTGCCTGCGGTGTCAG+GGG | - | chr4_3:45835351-45835370 | None:intergenic | 60.0% |
| ! | CAACAGTGCCTGCGGTGTCA+GGG | - | chr4_3:45835352-45835371 | None:intergenic | 60.0% |
| TCAACAGTGCCTGCGGTGTC+AGG | - | chr4_3:45835353-45835372 | None:intergenic | 60.0% | |
| !! | CCTGCAAAGGCGCTGTCATC+CGG | - | chr4_3:45835506-45835525 | None:intergenic | 60.0% |
| CTTCCCCGGTGCCTTAGCAA+CGG | - | chr4_3:45835822-45835841 | None:intergenic | 60.0% | |
| !! | ACCGGGGAAGGCACCATCTT+TGG | + | chr4_3:45835832-45835851 | Msa0643240:CDS | 60.0% |
| GCCAAAGATGGTGCCTTCCC+CGG | - | chr4_3:45835836-45835855 | None:intergenic | 60.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | - | chr4_3:45835278-45835297 | None:intergenic | 65.0% | |
| GGAGCTGCAGCTGGTGTGGT+TGG | - | chr4_3:45835284-45835303 | None:intergenic | 65.0% | |
| GATTCCACCCCTGACACCGC+AGG | + | chr4_3:45835341-45835360 | Msa0643240:CDS | 65.0% | |
| CCGGATGACAGCGCCTTTGC+AGG | + | chr4_3:45835503-45835522 | Msa0643240:CDS | 65.0% | |
| !! | CGTTGCTAAGGCACCGGGGA+AGG | + | chr4_3:45835820-45835839 | Msa0643240:CDS | 65.0% |
| ! | AGTGCCTGCGGTGTCAGGGG+TGG | - | chr4_3:45835348-45835367 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 45832346 | 45836030 | 45832346 | ID=Msa0643240;Name=Msa0643240 |
| chr4_3 | mRNA | 45832346 | 45836030 | 45832346 | ID=Msa0643240-mRNA-1;Parent=Msa0643240;Name=Msa0643240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|4|0|509 |
| chr4_3 | exon | 45832346 | 45832592 | 45832346 | ID=Msa0643240-mRNA-1:exon:10654;Parent=Msa0643240-mRNA-1 |
| chr4_3 | exon | 45832611 | 45832829 | 45832611 | ID=Msa0643240-mRNA-1:exon:10655;Parent=Msa0643240-mRNA-1 |
| chr4_3 | exon | 45832872 | 45833105 | 45832872 | ID=Msa0643240-mRNA-1:exon:10656;Parent=Msa0643240-mRNA-1 |
| chr4_3 | exon | 45835201 | 45836030 | 45835201 | ID=Msa0643240-mRNA-1:exon:10657;Parent=Msa0643240-mRNA-1 |
| chr4_3 | CDS | 45832346 | 45832592 | 45832346 | ID=Msa0643240-mRNA-1:cds;Parent=Msa0643240-mRNA-1 |
| chr4_3 | CDS | 45832611 | 45832829 | 45832611 | ID=Msa0643240-mRNA-1:cds;Parent=Msa0643240-mRNA-1 |
| chr4_3 | CDS | 45832872 | 45833105 | 45832872 | ID=Msa0643240-mRNA-1:cds;Parent=Msa0643240-mRNA-1 |
| chr4_3 | CDS | 45835201 | 45836030 | 45835201 | ID=Msa0643240-mRNA-1:cds;Parent=Msa0643240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
