Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338580 | XP_003597210.2 | 43.011 | 186 | 71 | 4 | 13 | 165 | 13 | 196 | 5.97e-29 | 127 |
| Msa0338580 | XP_003597210.2 | 91.986 | 287 | 19 | 1 | 226 | 508 | 7 | 293 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338580 | sp|Q8LEE9|FLA12_ARATH | 48.993 | 149 | 74 | 2 | 283 | 430 | 38 | 185 | 1.42e-39 | 147 |
| Msa0338580 | sp|Q8LEE9|FLA12_ARATH | 36.508 | 126 | 53 | 2 | 65 | 163 | 39 | 164 | 9.81e-18 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142380 | Msa0338580 | 0.868510 | 6.190645e-66 | -8.615850e-47 |
| Msa0194000 | Msa0338580 | 0.863916 | 1.769116e-64 | -8.615850e-47 |
| Msa0221820 | Msa0338580 | 0.968215 | 2.317576e-128 | -8.615850e-47 |
| Msa0235870 | Msa0338580 | 0.844978 | 5.406253e-59 | -8.615850e-47 |
| Msa0250450 | Msa0338580 | 0.842709 | 2.191596e-58 | -8.615850e-47 |
| Msa0263440 | Msa0338580 | 0.972511 | 6.924338e-135 | -8.615850e-47 |
| Msa0269380 | Msa0338580 | 0.859625 | 3.634479e-63 | -8.615850e-47 |
| Msa0288900 | Msa0338580 | 0.842424 | 2.607545e-58 | -8.615850e-47 |
| Msa0289100 | Msa0338580 | 0.801312 | 9.556679e-49 | -8.615850e-47 |
| Msa0301030 | Msa0338580 | 0.966633 | 3.498489e-126 | -8.615850e-47 |
| Msa0314220 | Msa0338580 | 0.875766 | 2.378283e-68 | -8.615850e-47 |
| Msa0314330 | Msa0338580 | 0.808843 | 2.537174e-50 | -8.615850e-47 |
| Msa0327020 | Msa0338580 | 0.805836 | 1.101381e-49 | -8.615850e-47 |
| Msa0338580 | Msa0485970 | 0.810248 | 1.266683e-50 | -8.615850e-47 |
| Msa0338580 | Msa0547390 | 0.812267 | 4.619540e-51 | -8.615850e-47 |
| Msa0338580 | Msa0602110 | 0.853882 | 1.780445e-61 | -8.615850e-47 |
| Msa0338580 | Msa0618600 | 0.866534 | 2.658422e-65 | -8.615850e-47 |
| Msa0338580 | Msa0643240 | 0.850095 | 2.119449e-60 | -8.615850e-47 |
| Msa0338580 | Msa0657380 | 0.901443 | 2.665695e-78 | -8.615850e-47 |
| Msa0338580 | Msa0682920 | 0.808866 | 2.509004e-50 | -8.615850e-47 |
| Msa0338580 | Msa0708510 | 0.919459 | 4.385094e-87 | -8.615850e-47 |
| Msa0338580 | Msa0792190 | 0.858063 | 1.065241e-62 | -8.615850e-47 |
| Msa0338580 | Msa1035290 | 0.885646 | 6.792429e-72 | -8.615850e-47 |
| Msa0338580 | Msa1075380 | 0.867863 | 1.000293e-65 | -8.615850e-47 |
| Msa0338580 | Msa1116460 | 0.874563 | 6.127027e-68 | -8.615850e-47 |
| Msa0338580 | Msa1199250 | 0.886780 | 2.539300e-72 | -8.615850e-47 |
| Msa0338580 | Msa1252480 | 0.845650 | 3.558850e-59 | -8.615850e-47 |
| Msa0338580 | Msa1267350 | 0.856216 | 3.736991e-62 | -8.615850e-47 |
| Msa0338580 | Msa1293220 | 0.877535 | 5.813139e-69 | -8.615850e-47 |
| Msa0338580 | Msa1421310 | 0.843357 | 1.472693e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338580 | MtrunA17_Chr2g0326411 | 91.986 | 287 | 19 | 1 | 226 | 508 | 7 | 293 | 0.0 | 528 |
| Msa0338580 | MtrunA17_Chr2g0326411 | 43.011 | 186 | 71 | 4 | 13 | 165 | 13 | 196 | 5.49e-33 | 127 |
| Msa0338580 | MtrunA17_Chr2g0326421 | 77.622 | 286 | 16 | 5 | 1 | 240 | 1 | 284 | 9.14e-126 | 368 |
| Msa0338580 | MtrunA17_Chr2g0326421 | 45.914 | 257 | 123 | 4 | 247 | 502 | 37 | 278 | 2.19e-62 | 205 |
| Msa0338580 | MtrunA17_Chr4g0029441 | 63.258 | 264 | 83 | 7 | 242 | 500 | 29 | 283 | 1.19e-96 | 294 |
| Msa0338580 | MtrunA17_Chr4g0029441 | 43.781 | 201 | 58 | 6 | 51 | 196 | 53 | 253 | 1.06e-36 | 137 |
| Msa0338580 | MtrunA17_Chr4g0029501 | 62.082 | 269 | 88 | 7 | 239 | 501 | 26 | 286 | 2.67e-96 | 293 |
| Msa0338580 | MtrunA17_Chr4g0029501 | 39.175 | 291 | 116 | 11 | 3 | 237 | 5 | 290 | 1.18e-40 | 148 |
| Msa0338580 | MtrunA17_Chr4g0026611 | 61.217 | 263 | 93 | 5 | 243 | 501 | 34 | 291 | 1.64e-89 | 276 |
| Msa0338580 | MtrunA17_Chr4g0026611 | 40.226 | 266 | 103 | 9 | 5 | 215 | 9 | 273 | 3.05e-38 | 141 |
| Msa0338580 | MtrunA17_Chr2g0284451 | 45.324 | 278 | 128 | 7 | 240 | 503 | 24 | 291 | 1.98e-66 | 216 |
| Msa0338580 | MtrunA17_Chr2g0284451 | 36.187 | 257 | 101 | 8 | 5 | 203 | 7 | 258 | 2.82e-31 | 122 |
| Msa0338580 | MtrunA17_Chr2g0284411 | 53.738 | 214 | 87 | 3 | 284 | 496 | 68 | 270 | 2.03e-66 | 216 |
| Msa0338580 | MtrunA17_Chr2g0284411 | 42.130 | 216 | 78 | 4 | 65 | 238 | 68 | 278 | 4.07e-39 | 143 |
| Msa0338580 | MtrunA17_Chr2g0284431 | 52.489 | 221 | 93 | 3 | 284 | 503 | 89 | 298 | 4.09e-66 | 215 |
| Msa0338580 | MtrunA17_Chr2g0284431 | 38.732 | 284 | 116 | 7 | 1 | 235 | 22 | 296 | 2.35e-39 | 144 |
| Msa0338580 | MtrunA17_Chr8g0379611 | 58.025 | 162 | 62 | 1 | 276 | 431 | 63 | 224 | 6.45e-59 | 197 |
| Msa0338580 | MtrunA17_Chr8g0379611 | 38.542 | 288 | 97 | 8 | 27 | 241 | 22 | 302 | 1.48e-37 | 140 |
| Msa0338580 | MtrunA17_Chr4g0029431 | 53.763 | 186 | 82 | 2 | 247 | 431 | 32 | 214 | 1.33e-57 | 192 |
| Msa0338580 | MtrunA17_Chr4g0029431 | 51.724 | 261 | 72 | 6 | 29 | 240 | 25 | 280 | 9.06e-56 | 187 |
| Msa0338580 | MtrunA17_Chr8g0379631 | 56.111 | 180 | 65 | 5 | 261 | 431 | 68 | 242 | 1.73e-55 | 188 |
| Msa0338580 | MtrunA17_Chr8g0379631 | 38.929 | 280 | 96 | 11 | 1 | 208 | 5 | 281 | 4.95e-30 | 119 |
| Msa0338580 | MtrunA17_Chr8g0379621 | 56.180 | 178 | 68 | 5 | 261 | 431 | 68 | 242 | 2.69e-55 | 187 |
| Msa0338580 | MtrunA17_Chr8g0379621 | 41.350 | 237 | 80 | 8 | 21 | 208 | 55 | 281 | 2.57e-29 | 117 |
| Msa0338580 | MtrunA17_Chr4g0029331 | 52.432 | 185 | 72 | 2 | 276 | 460 | 54 | 222 | 4.39e-51 | 175 |
| Msa0338580 | MtrunA17_Chr4g0029331 | 37.674 | 215 | 67 | 5 | 1 | 174 | 24 | 212 | 3.64e-29 | 115 |
| Msa0338580 | MtrunA17_Chr2g0326431 | 53.691 | 149 | 68 | 1 | 283 | 431 | 40 | 187 | 9.55e-49 | 168 |
| Msa0338580 | MtrunA17_Chr2g0326431 | 47.297 | 148 | 37 | 2 | 65 | 171 | 41 | 188 | 8.53e-28 | 111 |
| Msa0338580 | MtrunA17_Chr7g0263981 | 44.371 | 151 | 82 | 2 | 279 | 428 | 35 | 184 | 2.42e-34 | 130 |
| Msa0338580 | MtrunA17_Chr7g0263981 | 33.766 | 154 | 60 | 3 | 61 | 172 | 36 | 189 | 6.22e-16 | 77.8 |
| Msa0338580 | MtrunA17_Chr2g0325021 | 34.906 | 212 | 128 | 3 | 264 | 466 | 16 | 226 | 7.28e-25 | 103 |
| Msa0338580 | MtrunA17_Chr2g0325021 | 28.814 | 177 | 100 | 3 | 73 | 234 | 73 | 238 | 2.64e-11 | 63.9 |
| Msa0338580 | MtrunA17_Chr7g0246041 | 32.022 | 178 | 116 | 2 | 279 | 456 | 179 | 351 | 3.55e-15 | 77.4 |
| Msa0338580 | MtrunA17_Chr5g0448001 | 29.609 | 179 | 117 | 5 | 284 | 459 | 48 | 220 | 6.70e-13 | 68.9 |
| Msa0338580 | MtrunA17_Chr2g0296571 | 28.497 | 193 | 127 | 6 | 279 | 464 | 190 | 378 | 8.81e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338580 | AT5G60490.1 | 48.993 | 149 | 74 | 2 | 283 | 430 | 38 | 185 | 1.44e-40 | 147 |
| Msa0338580 | AT5G60490.1 | 36.508 | 126 | 53 | 2 | 65 | 163 | 39 | 164 | 9.97e-19 | 86.3 |
| Msa0338580 | AT5G03170.1 | 44.186 | 172 | 87 | 2 | 279 | 449 | 31 | 194 | 8.82e-40 | 144 |
| Msa0338580 | AT5G03170.1 | 37.195 | 164 | 59 | 4 | 61 | 180 | 32 | 195 | 1.89e-19 | 88.2 |
| Msa0338580 | AT5G44130.1 | 34.536 | 194 | 123 | 3 | 284 | 474 | 36 | 228 | 6.90e-27 | 109 |
| Msa0338580 | AT2G20520.1 | 37.433 | 187 | 104 | 5 | 270 | 448 | 19 | 200 | 4.76e-25 | 104 |
| Msa0338580 | AT1G03870.1 | 34.010 | 197 | 119 | 4 | 284 | 474 | 39 | 230 | 6.21e-24 | 101 |
| Msa0338580 | AT3G46550.1 | 30.588 | 170 | 110 | 5 | 269 | 433 | 192 | 358 | 2.98e-14 | 75.1 |
Find 114 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATGAATTGGCTTGTTTA+AGG | 0.148309 | 2_4:+58936020 | None:intergenic |
| TTGCTTCCTCTTGATTTCTT+TGG | 0.151087 | 2_4:-58938866 | Msa0338580:CDS |
| TGCTTCCTCTTGATTTCTTT+GGG | 0.217030 | 2_4:-58938865 | Msa0338580:CDS |
| ATGTTCAATGGAAGCTTTAA+AGG | 0.264173 | 2_4:+58938998 | None:intergenic |
| TTTCCAGCAAGTGTTCTTAC+AGG | 0.276561 | 2_4:+58935767 | None:intergenic |
| GTGAGAAGGAAAAGATAATT+TGG | 0.276779 | 2_4:+58939479 | None:intergenic |
| GACTTTGTCTTATCAGCTTT+CGG | 0.319470 | 2_4:+58938797 | None:intergenic |
| ATAAATAGCAAGATGTTTAT+CGG | 0.320043 | 2_4:+58935646 | None:intergenic |
| GGGATGAAATTGGTTGGGTA+GGG | 0.322807 | 2_4:+58936128 | None:intergenic |
| GAAAATTGTTGCTGAGGTTC+CGG | 0.329669 | 2_4:-58935579 | Msa0338580:CDS |
| TGTTGCTGAGGTTCCGGCTT+TGG | 0.331915 | 2_4:-58935573 | Msa0338580:CDS |
| AGTGTTAACACCACGATTAA+TGG | 0.347939 | 2_4:-58935680 | Msa0338580:CDS |
| CATCTTGCTATTTATAAAGT+TGG | 0.349855 | 2_4:-58935638 | Msa0338580:CDS |
| GGATGAAATTGGTTGGGTAG+GGG | 0.350124 | 2_4:+58936129 | None:intergenic |
| TTACCAGCCACTGTCTCAAC+AGG | 0.354909 | 2_4:+58939025 | None:intergenic |
| GTTGCTGTTGCTGCCGTGTT+GGG | 0.357964 | 2_4:+58939424 | None:intergenic |
| GATGAAATTGGTTGGGTAGG+GGG | 0.367132 | 2_4:+58936130 | None:intergenic |
| TCTTGATTTCTTTGGGACTA+AGG | 0.372078 | 2_4:-58938858 | Msa0338580:CDS |
| GAGGAAAATATTGAATGAAT+TGG | 0.374447 | 2_4:+58936009 | None:intergenic |
| GGAACAACATTGAAGTCTAT+TGG | 0.380617 | 2_4:-58938695 | Msa0338580:CDS |
| TTGTTGCAGTGGCAATGTTA+TGG | 0.390462 | 2_4:-58938664 | Msa0338580:CDS |
| AACCCTGTAAGAACACTTGC+TGG | 0.390538 | 2_4:-58935770 | Msa0338580:CDS |
| TCAGGGGTAGTATTGTCATT+TGG | 0.391905 | 2_4:+58936076 | None:intergenic |
| GCTATTGCTTCCGCAGCAAC+AGG | 0.394680 | 2_4:+58938821 | None:intergenic |
| TTTGGTGCTGGGGCATGTTT+CGG | 0.398183 | 2_4:+58939385 | None:intergenic |
| GATGTTGGTGATGCTGCTTT+TGG | 0.401270 | 2_4:+58939367 | None:intergenic |
| GAACTTAACGTGATTAGTTA+TGG | 0.403328 | 2_4:-58935728 | Msa0338580:CDS |
| TGGTGGAAATGTGGGGACTA+AGG | 0.405812 | 2_4:+58936096 | None:intergenic |
| TCTGGAGCAGTGAGTTTACT+TGG | 0.406395 | 2_4:-58938725 | Msa0338580:CDS |
| TGTTGCTGTTGCTGCCGTGT+TGG | 0.415192 | 2_4:+58939423 | None:intergenic |
| TGTTGGGGATGAAATTGGTT+GGG | 0.415256 | 2_4:+58936123 | None:intergenic |
| GGGGATGAAATTGGTTGGGT+AGG | 0.425631 | 2_4:+58936127 | None:intergenic |
| TCTGGTAATGTCGGGACTAA+TGG | 0.427142 | 2_4:+58939337 | None:intergenic |
| GCAGCAACAGGAGCAGCAGC+AGG | 0.428213 | 2_4:+58938833 | None:intergenic |
| GTGGTTAATGCTACTGTTAC+CGG | 0.433055 | 2_4:-58938938 | Msa0338580:CDS |
| ACCAGTGTTAGTCTTTCAAC+TGG | 0.433716 | 2_4:-58938962 | Msa0338580:CDS |
| ACTTGGGTGGCACTTGTTGT+TGG | 0.450548 | 2_4:-58935416 | Msa0338580:CDS |
| TTCTGAGAAGGCGGAATCGT+CGG | 0.454414 | 2_4:+58935901 | None:intergenic |
| GCTTTCTCACATCTCAAAGC+AGG | 0.456572 | 2_4:-58939148 | Msa0338580:CDS |
| GGTGGAAATGTGGGGACTAA+GGG | 0.457490 | 2_4:+58936097 | None:intergenic |
| TGTTCAATGGAAGCTTTAAA+GGG | 0.463949 | 2_4:+58938999 | None:intergenic |
| TCTGAGAAGGCGGAATCGTC+GGG | 0.465451 | 2_4:+58935902 | None:intergenic |
| ACCAGCTATTGCTGATGCTA+AGG | 0.469777 | 2_4:-58935543 | Msa0338580:CDS |
| GCATGTTTCGGTGACGCTGC+TGG | 0.471851 | 2_4:+58939397 | None:intergenic |
| CCATTGAACATCGAATCGTT+TGG | 0.477903 | 2_4:-58938986 | Msa0338580:CDS |
| GCTGGTGCTGGCGCCAAAGC+CGG | 0.479065 | 2_4:+58935560 | None:intergenic |
| GCCTTAGCATCAGCAATAGC+TGG | 0.484689 | 2_4:+58935542 | None:intergenic |
| GGGGTAGTATTGTCATTTGG+TGG | 0.487471 | 2_4:+58936079 | None:intergenic |
| GGAAATGTGAACATTTCAAC+GGG | 0.489369 | 2_4:-58935704 | Msa0338580:CDS |
| TTGTTGGGGATGAAATTGGT+TGG | 0.493598 | 2_4:+58936122 | None:intergenic |
| GCATCAGCAATAGCTGGTGC+TGG | 0.502506 | 2_4:+58935548 | None:intergenic |
| TTAGGAGCTGTGAGTTGAGC+TGG | 0.506453 | 2_4:+58935957 | None:intergenic |
| GCCTTCTCAGAACTCAAACC+AGG | 0.511146 | 2_4:-58935890 | Msa0338580:CDS |
| AGCAAGTGTTCTTACAGGGT+TGG | 0.512112 | 2_4:+58935772 | None:intergenic |
| CTGAGGTGTCTGGTAATGTC+GGG | 0.518481 | 2_4:+58939329 | None:intergenic |
| ATTTGAACTATGTCTGTTGT+GGG | 0.519664 | 2_4:+58936043 | None:intergenic |
| TGTTAGTCTTTCAACTGGTG+TGG | 0.520094 | 2_4:-58938957 | Msa0338580:CDS |
| TGTGAGAAAGCTGAGTCATC+CGG | 0.520744 | 2_4:+58939160 | None:intergenic |
| GGATTGACATGAGTGGAACT+TGG | 0.521312 | 2_4:-58935433 | Msa0338580:CDS |
| TTGAACTATGTCTGTTGTGG+GGG | 0.523746 | 2_4:+58936045 | None:intergenic |
| GTTGAATCTTGAGATGATGA+TGG | 0.524846 | 2_4:+58935497 | None:intergenic |
| TGCTGCTGCTCCTGTTGCTG+CGG | 0.526125 | 2_4:-58938831 | Msa0338580:CDS |
| TCTGAGGTGTCTGGTAATGT+CGG | 0.526969 | 2_4:+58939328 | None:intergenic |
| TGCTAAGAAAATTGTTGCTG+AGG | 0.530469 | 2_4:-58935585 | Msa0338580:CDS |
| GATTTGAACTATGTCTGTTG+TGG | 0.530776 | 2_4:+58936042 | None:intergenic |
| CCAAACGATTCGATGTTCAA+TGG | 0.533393 | 2_4:+58938986 | None:intergenic |
| ACACTTGCTGGAAACAAACC+TGG | 0.537319 | 2_4:-58935758 | Msa0338580:CDS |
| GTTGTTGGAATTGTCTTCGT+GGG | 0.546805 | 2_4:-58935401 | Msa0338580:CDS |
| TTAGCAGGAGAAAATTCTGA+TGG | 0.547442 | 2_4:+58935602 | None:intergenic |
| GAGAGTGAGTTGAGGAACCC+TGG | 0.549587 | 2_4:+58935872 | None:intergenic |
| TGCGAGGATCGTTAAGCCGC+CGG | 0.550833 | 2_4:+58935925 | None:intergenic |
| CAGCTCCTAACCATAAAATC+CGG | 0.551779 | 2_4:-58935944 | Msa0338580:CDS |
| TTCCAGCAAGTGTTCTTACA+GGG | 0.554792 | 2_4:+58935768 | None:intergenic |
| TCAAGATTCAACAACGTCGC+AGG | 0.554836 | 2_4:-58935486 | Msa0338580:CDS |
| CCCTGGTTTGAGTTCTGAGA+AGG | 0.557457 | 2_4:+58935889 | None:intergenic |
| CAACAAACTGTGGAAGAATG+TGG | 0.559737 | 2_4:+58939077 | None:intergenic |
| GTCGTCCGGGGTGGAATCTG+AGG | 0.559966 | 2_4:+58939312 | None:intergenic |
| TGTTGTTGGAATTGTCTTCG+TGG | 0.560250 | 2_4:-58935402 | Msa0338580:CDS |
| CTTAACGTGATTAGTTATGG+TGG | 0.562819 | 2_4:-58935725 | Msa0338580:CDS |
| CATGAGTAGAAAGAGTGAGA+AGG | 0.564185 | 2_4:+58939465 | None:intergenic |
| TTGTCATTTGGTGGAAATGT+GGG | 0.567604 | 2_4:+58936088 | None:intergenic |
| GTCTTCTTCTGAAGAAGATG+AGG | 0.569485 | 2_4:-58938777 | Msa0338580:CDS |
| AGGCGGAATCGTCGGGTGCG+AGG | 0.569498 | 2_4:+58935909 | None:intergenic |
| AACCCTGTTGAGACAGTGGC+TGG | 0.569511 | 2_4:-58939028 | Msa0338580:CDS |
| GATTGAATTGGTGACGTGGC+AGG | 0.572006 | 2_4:+58936154 | None:intergenic |
| GGGGTGGAATCTGAGGTGTC+TGG | 0.574659 | 2_4:+58939319 | None:intergenic |
| CTTTCTCACATCTCAAAGCA+GGG | 0.577178 | 2_4:-58939147 | Msa0338580:CDS |
| CTGTGACTTCTAGTGCTATG+AGG | 0.580983 | 2_4:-58935454 | Msa0338580:CDS |
| ATTGTCATTTGGTGGAAATG+TGG | 0.584708 | 2_4:+58936087 | None:intergenic |
| GTGAGTTTACTTGGAATGCA+AGG | 0.589105 | 2_4:-58938716 | Msa0338580:CDS |
| CTCATTGTATTCTCCCAACA+CGG | 0.596372 | 2_4:-58939437 | Msa0338580:CDS |
| TGAGGATGATACAACAACTC+AGG | 0.597666 | 2_4:-58938759 | Msa0338580:CDS |
| CCTTCTCAGAACTCAAACCA+GGG | 0.601582 | 2_4:-58935889 | Msa0338580:CDS |
| ACCAGTTGAAAGACTAACAC+TGG | 0.603639 | 2_4:+58938961 | None:intergenic |
| TGGAAATGTGAACATTTCAA+CGG | 0.610164 | 2_4:-58935705 | Msa0338580:CDS |
| TAGTAACCCTGTTGAGACAG+TGG | 0.611903 | 2_4:-58939032 | Msa0338580:CDS |
| TTTCATTGGAGAGTGAGTTG+AGG | 0.614496 | 2_4:+58935864 | None:intergenic |
| TTTGAACTATGTCTGTTGTG+GGG | 0.615041 | 2_4:+58936044 | None:intergenic |
| TTAGTCCCAAAGAAATCAAG+AGG | 0.616533 | 2_4:+58938860 | None:intergenic |
| GTTGGAATTGTCTTCGTGGG+AGG | 0.620149 | 2_4:-58935398 | Msa0338580:CDS |
| TGGTTTGAGTTCTGAGAAGG+CGG | 0.623094 | 2_4:+58935892 | None:intergenic |
| GATTGACATGAGTGGAACTT+GGG | 0.631120 | 2_4:-58935432 | Msa0338580:CDS |
| ATACAAAATCAGAAATAACA+TGG | 0.635906 | 2_4:+58935819 | None:intergenic |
| TGTCATTTGGTGGAAATGTG+GGG | 0.636447 | 2_4:+58936089 | None:intergenic |
| ATAGCACTAGAAGTCACAGC+AGG | 0.654697 | 2_4:+58935458 | None:intergenic |
| ATATATGATTCCATTAATCG+TGG | 0.660112 | 2_4:+58935670 | None:intergenic |
| CTCCTAACCATAAAATCCGG+CGG | 0.662023 | 2_4:-58935941 | Msa0338580:CDS |
| TACCAGCCACTGTCTCAACA+GGG | 0.663127 | 2_4:+58939026 | None:intergenic |
| TTATTGCTATCAACAAACTG+TGG | 0.684733 | 2_4:+58939067 | None:intergenic |
| TGACATGAGTGGAACTTGGG+TGG | 0.707155 | 2_4:-58935429 | Msa0338580:CDS |
| GGGTGATTGAATTGGTGACG+TGG | 0.709828 | 2_4:+58936150 | None:intergenic |
| GCTATGAGGATTGACATGAG+TGG | 0.723158 | 2_4:-58935440 | Msa0338580:CDS |
| CGTGTTGGGAGAATACAATG+AGG | 0.742075 | 2_4:+58939438 | None:intergenic |
| AGACACCTCAGATTCCACCC+CGG | 0.745070 | 2_4:-58939317 | Msa0338580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATTATGTTAATTTAAAT+AGG | + | chr2_4:58936602-58936621 | None:intergenic | 10.0% |
| !! | ATTTAAATTAACATAATTTG+AGG | - | chr2_4:58936602-58936621 | Msa0338580:intron | 10.0% |
| !!! | TTTTGAAATATTTTTATTAG+AGG | + | chr2_4:58936681-58936700 | None:intergenic | 10.0% |
| !! | GCAATTTAAAAAATAAAAAT+AGG | - | chr2_4:58936867-58936886 | Msa0338580:intron | 10.0% |
| !!! | AAAATTAAATTCCTTTTTTA+TGG | - | chr2_4:58937108-58937127 | Msa0338580:intron | 10.0% |
| !!! | TTTTAATTCAGAATTTTAAA+AGG | - | chr2_4:58937875-58937894 | Msa0338580:intron | 10.0% |
| !!! | TAAAATATTTTGTACTTTTT+CGG | - | chr2_4:58938055-58938074 | Msa0338580:intron | 10.0% |
| !!! | AAAAGAATTTTAAAAGTAAT+TGG | - | chr2_4:58938087-58938106 | Msa0338580:intron | 10.0% |
| !! | ATAATATTGTTATAATGATT+GGG | + | chr2_4:58938438-58938457 | None:intergenic | 10.0% |
| !! | AATAATATTGTTATAATGAT+TGG | + | chr2_4:58938439-58938458 | None:intergenic | 10.0% |
| !!! | TTTCTTTTGCAAAAATATTT+TGG | - | chr2_4:58936939-58936958 | Msa0338580:intron | 15.0% |
| !!! | TTCTTTTGCAAAAATATTTT+GGG | - | chr2_4:58936940-58936959 | Msa0338580:intron | 15.0% |
| !! | ATTTGTTTGAAAATATGTAT+TGG | + | chr2_4:58937622-58937641 | None:intergenic | 15.0% |
| !! | TCTTAACACATATATTATTA+TGG | + | chr2_4:58937675-58937694 | None:intergenic | 15.0% |
| !!! | TTGTTTTATATTGAATTTTG+TGG | + | chr2_4:58938510-58938529 | None:intergenic | 15.0% |
| !!! | TTTTTATATGTCATCATTTT+GGG | + | chr2_4:58938622-58938641 | None:intergenic | 15.0% |
| !!! | TTTTTTATATGTCATCATTT+TGG | + | chr2_4:58938623-58938642 | None:intergenic | 15.0% |
| !!! | CAAATTCAAACATTTTTACA+AGG | + | chr2_4:58936352-58936371 | None:intergenic | 20.0% |
| !! | GATTAAATCAAATTACTCAA+TGG | + | chr2_4:58936386-58936405 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATCTCTA+TGG | - | chr2_4:58936418-58936437 | Msa0338580:intron | 20.0% |
| !! | ATAATGTTTGAACTTTACAT+TGG | + | chr2_4:58936488-58936507 | None:intergenic | 20.0% |
| !!! | AAAGTTGTAGATTTTTTTAC+AGG | + | chr2_4:58936542-58936561 | None:intergenic | 20.0% |
| !!! | CTTTACAATCTTTTTCATAA+TGG | + | chr2_4:58936780-58936799 | None:intergenic | 20.0% |
| !! | AATTGGAAATTGCTTAAAAT+AGG | - | chr2_4:58937232-58937251 | Msa0338580:intron | 20.0% |
| !!! | AAATAGGTTAAGTTAAGTTT+TGG | - | chr2_4:58937248-58937267 | Msa0338580:intron | 20.0% |
| !!! | AATAGGTTAAGTTAAGTTTT+GGG | - | chr2_4:58937249-58937268 | Msa0338580:intron | 20.0% |
| !! | AATGATTTGATTAATGTTGA+TGG | - | chr2_4:58937311-58937330 | Msa0338580:intron | 20.0% |
| !! | CAAAATGACACATTAAAATA+AGG | - | chr2_4:58937840-58937859 | Msa0338580:intron | 20.0% |
| !!! | ATATATCTCTTAATTTGGTA+AGG | + | chr2_4:58938313-58938332 | None:intergenic | 20.0% |
| !! | TGTGTATATATCTCTTAATT+TGG | + | chr2_4:58938318-58938337 | None:intergenic | 20.0% |
| !!! | TTATAATGATTGGGATATTT+TGG | + | chr2_4:58938429-58938448 | None:intergenic | 20.0% |
| !!! | TTTTATATGTCATCATTTTG+GGG | + | chr2_4:58938621-58938640 | None:intergenic | 20.0% |
| !!! | TAGTTCAAGTTTTTTTTCAT+TGG | + | chr2_4:58939016-58939035 | None:intergenic | 20.0% |
| !! | ATACAAAATCAGAAATAACA+TGG | + | chr2_4:58939047-58939066 | None:intergenic | 20.0% |
| !! | ATAAATAGCAAGATGTTTAT+CGG | + | chr2_4:58939220-58939239 | None:intergenic | 20.0% |
| ! | CATAACAAAAATCCTCAAAA+AGG | - | chr2_4:58935573-58935592 | Msa0338580:CDS | 25.0% |
| ! | TACAAGGAATAAAATGAACA+TGG | + | chr2_4:58936336-58936355 | None:intergenic | 25.0% |
| ! | AACAATCTCTATGGATATAT+TGG | - | chr2_4:58936427-58936446 | Msa0338580:intron | 25.0% |
| ! | AACATAATTTGAGGATTTGT+TGG | - | chr2_4:58936611-58936630 | Msa0338580:intron | 25.0% |
| !! | TGGAATATTACCAAATTTTG+TGG | - | chr2_4:58936631-58936650 | Msa0338580:intron | 25.0% |
| !!! | AGATTGTAAAGTTTTGTTGA+TGG | - | chr2_4:58936789-58936808 | Msa0338580:intron | 25.0% |
| !! | AATGTCTTCCTTTTTGTATT+TGG | - | chr2_4:58936912-58936931 | Msa0338580:intron | 25.0% |
| ! | GAAAAACACCAAATACAAAA+AGG | + | chr2_4:58936923-58936942 | None:intergenic | 25.0% |
| !!! | AAAATATTTTGGGTAAGTAC+AGG | - | chr2_4:58936950-58936969 | Msa0338580:intron | 25.0% |
| ! | GTAACATATCATCTAAGAAT+TGG | - | chr2_4:58937585-58937604 | Msa0338580:intron | 25.0% |
| ! | AGAGAAATAAATGTAGTTGT+GGG | + | chr2_4:58937797-58937816 | None:intergenic | 25.0% |
| ! | AAGAGAAATAAATGTAGTTG+TGG | + | chr2_4:58937798-58937817 | None:intergenic | 25.0% |
| ! | ATTTGGTAAGGATATTAAGA+TGG | + | chr2_4:58938301-58938320 | None:intergenic | 25.0% |
| ! | TTGAGTCTATTAAGATTGAT+AGG | + | chr2_4:58938404-58938423 | None:intergenic | 25.0% |
| !! | TGAATTTTGTGGACAATTAT+TGG | + | chr2_4:58938499-58938518 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTGGTGTTTTGAA+AGG | + | chr2_4:58938591-58938610 | None:intergenic | 25.0% |
| ! | GAGGAAAATATTGAATGAAT+TGG | + | chr2_4:58938857-58938876 | None:intergenic | 25.0% |
| ! | ATATATGATTCCATTAATCG+TGG | + | chr2_4:58939196-58939215 | None:intergenic | 25.0% |
| !!! | CATCTTGCTATTTATAAAGT+TGG | - | chr2_4:58939225-58939244 | Msa0338580:intron | 25.0% |
| GTGAGAAGGAAAAGATAATT+TGG | + | chr2_4:58935387-58935406 | None:intergenic | 30.0% | |
| !!! | TTTGTGTTGTTTTTAGGAGA+CGG | + | chr2_4:58935621-58935640 | None:intergenic | 30.0% |
| TTATTGCTATCAACAAACTG+TGG | + | chr2_4:58935799-58935818 | None:intergenic | 30.0% | |
| !! | TGTTCAATGGAAGCTTTAAA+GGG | + | chr2_4:58935867-58935886 | None:intergenic | 30.0% |
| ! | ATGTTCAATGGAAGCTTTAA+AGG | + | chr2_4:58935868-58935887 | None:intergenic | 30.0% |
| GTTATCTTGATAAACTACAC+CGG | + | chr2_4:58935947-58935966 | None:intergenic | 30.0% | |
| TGCTATATATCGTTTGGATA+AGG | - | chr2_4:58935972-58935991 | Msa0338580:CDS | 30.0% | |
| ACTCAGGATAAAAAAAGTTC+TGG | - | chr2_4:58936120-58936139 | Msa0338580:CDS | 30.0% | |
| ATTGGATGAAAAGAAACTTC+AGG | - | chr2_4:58936445-58936464 | Msa0338580:intron | 30.0% | |
| CATTGTGTATCCACAAAATT+TGG | + | chr2_4:58936644-58936663 | None:intergenic | 30.0% | |
| GATACACAATGTGTTATGAT+AGG | - | chr2_4:58936653-58936672 | Msa0338580:intron | 30.0% | |
| ! | ATTGGCCTATACTCTATATA+TGG | + | chr2_4:58937209-58937228 | None:intergenic | 30.0% |
| AAGCAATTTCCAATTGCAAT+TGG | + | chr2_4:58937227-58937246 | None:intergenic | 30.0% | |
| GCTTCAATAGTAAAAATGTG+CGG | + | chr2_4:58937291-58937310 | None:intergenic | 30.0% | |
| !!! | TTTCTCTTGTTTTTGTTGAG+TGG | - | chr2_4:58937428-58937447 | Msa0338580:intron | 30.0% |
| ACATATCATCTAAGAATTGG+TGG | - | chr2_4:58937588-58937607 | Msa0338580:intron | 30.0% | |
| GTGTGTTAAATAGACTACTT+AGG | - | chr2_4:58937718-58937737 | Msa0338580:intron | 30.0% | |
| TAGCCTACTAAAATTGTCAT+TGG | - | chr2_4:58937962-58937981 | Msa0338580:intron | 30.0% | |
| !! | CATCCAATGACAATTTTAGT+AGG | + | chr2_4:58937968-58937987 | None:intergenic | 30.0% |
| ! | TGAGAGGTCAATTTGATTTA+GGG | + | chr2_4:58938190-58938209 | None:intergenic | 30.0% |
| ! | TGGGGTATATGAAAAAGTTT+TGG | + | chr2_4:58938603-58938622 | None:intergenic | 30.0% |
| !! | TAAAGTGTTGGAACAAAAGA+GGG | + | chr2_4:58938677-58938696 | None:intergenic | 30.0% |
| ATTTGAACTATGTCTGTTGT+GGG | + | chr2_4:58938823-58938842 | None:intergenic | 30.0% | |
| !! | TGAATGAATTGGCTTGTTTA+AGG | + | chr2_4:58938846-58938865 | None:intergenic | 30.0% |
| ! | GAACTTAACGTGATTAGTTA+TGG | - | chr2_4:58939135-58939154 | Msa0338580:CDS | 30.0% |
| TGGAAATGTGAACATTTCAA+CGG | - | chr2_4:58939158-58939177 | Msa0338580:CDS | 30.0% | |
| !! | GATGATGGTTTTTCTTTTTC+AGG | + | chr2_4:58939354-58939373 | None:intergenic | 30.0% |
| !!! | ACTAATGGTTTTGTCGATGT+TGG | + | chr2_4:58935514-58935533 | None:intergenic | 35.0% |
| !! | AGGATTTTTGTTATGTCGTC+CGG | + | chr2_4:58935568-58935587 | None:intergenic | 35.0% |
| ! | TGAATGTTTTCGCCTTTTTG+AGG | + | chr2_4:58935588-58935607 | None:intergenic | 35.0% |
| !!! | TTGTGTTGTTTTTAGGAGAC+GGG | + | chr2_4:58935620-58935639 | None:intergenic | 35.0% |
| !!! | CCACGATTTGTGTTGTTTTT+AGG | + | chr2_4:58935627-58935646 | None:intergenic | 35.0% |
| CCTAAAAACAACACAAATCG+TGG | - | chr2_4:58935624-58935643 | Msa0338580:CDS | 35.0% | |
| GTGAAATGAGTTGTGAGTTT+AGG | + | chr2_4:58935654-58935673 | None:intergenic | 35.0% | |
| CAACTCATTTCACCAAAAAG+CGG | - | chr2_4:58935661-58935680 | Msa0338580:CDS | 35.0% | |
| !! | CAAGCTTGCTATATATCGTT+TGG | - | chr2_4:58935966-58935985 | Msa0338580:CDS | 35.0% |
| TTGCTTCCTCTTGATTTCTT+TGG | - | chr2_4:58935997-58936016 | Msa0338580:CDS | 35.0% | |
| TGCTTCCTCTTGATTTCTTT+GGG | - | chr2_4:58935998-58936017 | Msa0338580:CDS | 35.0% | |
| TTAGTCCCAAAGAAATCAAG+AGG | + | chr2_4:58936006-58936025 | None:intergenic | 35.0% | |
| !! | TCTTGATTTCTTTGGGACTA+AGG | - | chr2_4:58936005-58936024 | Msa0338580:CDS | 35.0% |
| GACTTTGTCTTATCAGCTTT+CGG | + | chr2_4:58936069-58936088 | None:intergenic | 35.0% | |
| GGAACAACATTGAAGTCTAT+TGG | - | chr2_4:58936168-58936187 | Msa0338580:CDS | 35.0% | |
| AACATCATTCATCACCCATT+TGG | - | chr2_4:58936230-58936249 | Msa0338580:intron | 35.0% | |
| !! | ATATTTTGGGTAAGTACAGG+AGG | - | chr2_4:58936953-58936972 | Msa0338580:intron | 35.0% |
| !! | TATTTTGGGTAAGTACAGGA+GGG | - | chr2_4:58936954-58936973 | Msa0338580:intron | 35.0% |
| CAGAATTGTCTGATCTTGAT+CGG | + | chr2_4:58937051-58937070 | None:intergenic | 35.0% | |
| GATTGAACGGTCCATAAAAA+AGG | + | chr2_4:58937122-58937141 | None:intergenic | 35.0% | |
| ACCGTTCAATCAAAATCAGA+CGG | - | chr2_4:58937131-58937150 | Msa0338580:intron | 35.0% | |
| !!! | ACCGTCTGATTTTGATTGAA+CGG | + | chr2_4:58937135-58937154 | None:intergenic | 35.0% |
| CTATACTCTATATATGGACC+TGG | + | chr2_4:58937203-58937222 | None:intergenic | 35.0% | |
| CAGGTCCATATATAGAGTAT+AGG | - | chr2_4:58937201-58937220 | Msa0338580:intron | 35.0% | |
| GAAATGGAAAAGTGGAGATT+GGG | - | chr2_4:58937492-58937511 | Msa0338580:intron | 35.0% | |
| ! | GAGAGGTCAATTTGATTTAG+GGG | + | chr2_4:58938189-58938208 | None:intergenic | 35.0% |
| ! | GTGAGAGGTCAATTTGATTT+AGG | + | chr2_4:58938191-58938210 | None:intergenic | 35.0% |
| TATAGGGAAAATAGAGTGAG+AGG | + | chr2_4:58938206-58938225 | None:intergenic | 35.0% | |
| ! | CTCACTCTATTTTCCCTATA+TGG | - | chr2_4:58938206-58938225 | Msa0338580:intron | 35.0% |
| TTGTGAGTGTACTCCATATA+GGG | + | chr2_4:58938222-58938241 | None:intergenic | 35.0% | |
| GTCACTTAAGATTGAATCAG+TGG | + | chr2_4:58938275-58938294 | None:intergenic | 35.0% | |
| CCATTAGATGTGAGAAGAAT+CGG | + | chr2_4:58938362-58938381 | None:intergenic | 35.0% | |
| ! | TTTTGTGGACAATTATTGGC+TGG | + | chr2_4:58938495-58938514 | None:intergenic | 35.0% |
| ATTGTGCTTGTAATGAGTGA+AGG | + | chr2_4:58938563-58938582 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTGTTTTGAAAGGA+TGG | + | chr2_4:58938587-58938606 | None:intergenic | 35.0% |
| !! | CTAAAGTGTTGGAACAAAAG+AGG | + | chr2_4:58938678-58938697 | None:intergenic | 35.0% |
| AGATAATGCTGCTAAAGTGT+TGG | + | chr2_4:58938689-58938708 | None:intergenic | 35.0% | |
| ! | TTGTCATTTGGTGGAAATGT+GGG | + | chr2_4:58938778-58938797 | None:intergenic | 35.0% |
| ! | ATTGTCATTTGGTGGAAATG+TGG | + | chr2_4:58938779-58938798 | None:intergenic | 35.0% |
| TTTGAACTATGTCTGTTGTG+GGG | + | chr2_4:58938822-58938841 | None:intergenic | 35.0% | |
| GATTTGAACTATGTCTGTTG+TGG | + | chr2_4:58938824-58938843 | None:intergenic | 35.0% | |
| !! | GTTGAGTTGTTTTCATGAGA+CGG | + | chr2_4:58938879-58938898 | None:intergenic | 35.0% |
| ! | ACGTTAAGTTCAACTTTTCC+AGG | + | chr2_4:58939126-58939145 | None:intergenic | 35.0% |
| ! | CTTAACGTGATTAGTTATGG+TGG | - | chr2_4:58939138-58939157 | Msa0338580:CDS | 35.0% |
| GGAAATGTGAACATTTCAAC+GGG | - | chr2_4:58939159-58939178 | Msa0338580:CDS | 35.0% | |
| AGTGTTAACACCACGATTAA+TGG | - | chr2_4:58939183-58939202 | Msa0338580:intron | 35.0% | |
| TTAGCAGGAGAAAATTCTGA+TGG | + | chr2_4:58939264-58939283 | None:intergenic | 35.0% | |
| ! | TCAGCAACAATTTTCTTAGC+AGG | + | chr2_4:58939279-58939298 | None:intergenic | 35.0% |
| TGCTAAGAAAATTGTTGCTG+AGG | - | chr2_4:58939278-58939297 | Msa0338580:CDS | 35.0% | |
| GTTGAATCTTGAGATGATGA+TGG | + | chr2_4:58939369-58939388 | None:intergenic | 35.0% | |
| CATGAGTAGAAAGAGTGAGA+AGG | + | chr2_4:58935401-58935420 | None:intergenic | 40.0% | |
| CTCATTGTATTCTCCCAACA+CGG | - | chr2_4:58935426-58935445 | Msa0338580:CDS | 40.0% | |
| !! | GATTTTTGTTATGTCGTCCG+GGG | + | chr2_4:58935566-58935585 | None:intergenic | 40.0% |
| !! | GGATTTTTGTTATGTCGTCC+GGG | + | chr2_4:58935567-58935586 | None:intergenic | 40.0% |
| !!! | TTGTTTTTAGGAGACGGGTT+AGG | + | chr2_4:58935615-58935634 | None:intergenic | 40.0% |
| !!! | ATTGTTAATCCGCCGCTTTT+TGG | + | chr2_4:58935676-58935695 | None:intergenic | 40.0% |
| CGGATTAACAATCTTAGCAC+CGG | - | chr2_4:58935684-58935703 | Msa0338580:CDS | 40.0% | |
| CTTTCTCACATCTCAAAGCA+GGG | - | chr2_4:58935716-58935735 | Msa0338580:CDS | 40.0% | |
| CAACAAACTGTGGAAGAATG+TGG | + | chr2_4:58935789-58935808 | None:intergenic | 40.0% | |
| CCAAACGATTCGATGTTCAA+TGG | + | chr2_4:58935880-58935899 | None:intergenic | 40.0% | |
| CCATTGAACATCGAATCGTT+TGG | - | chr2_4:58935877-58935896 | Msa0338580:CDS | 40.0% | |
| !! | ACCAGTGTTAGTCTTTCAAC+TGG | - | chr2_4:58935901-58935920 | Msa0338580:CDS | 40.0% |
| ACCAGTTGAAAGACTAACAC+TGG | + | chr2_4:58935905-58935924 | None:intergenic | 40.0% | |
| !! | TGTTAGTCTTTCAACTGGTG+TGG | - | chr2_4:58935906-58935925 | Msa0338580:CDS | 40.0% |
| GTGGTTAATGCTACTGTTAC+CGG | - | chr2_4:58935925-58935944 | Msa0338580:CDS | 40.0% | |
| ! | GTCTTCTTCTGAAGAAGATG+AGG | - | chr2_4:58936086-58936105 | Msa0338580:CDS | 40.0% |
| TGAGGATGATACAACAACTC+AGG | - | chr2_4:58936104-58936123 | Msa0338580:CDS | 40.0% | |
| GTGAGTTTACTTGGAATGCA+AGG | - | chr2_4:58936147-58936166 | Msa0338580:CDS | 40.0% | |
| TTGTTGCAGTGGCAATGTTA+TGG | - | chr2_4:58936199-58936218 | Msa0338580:intron | 40.0% | |
| TTCATATGCAGCTGCCAAAT+GGG | + | chr2_4:58936247-58936266 | None:intergenic | 40.0% | |
| ATTCATATGCAGCTGCCAAA+TGG | + | chr2_4:58936248-58936267 | None:intergenic | 40.0% | |
| TTCCAGTTCTGTTCTGTTGT+TGG | - | chr2_4:58936304-58936323 | Msa0338580:intron | 40.0% | |
| AACCAACAACAGAACAGAAC+TGG | + | chr2_4:58936309-58936328 | None:intergenic | 40.0% | |
| ! | CTGCATGAACTTGATGATTG+CGG | - | chr2_4:58937168-58937187 | Msa0338580:intron | 40.0% |
| ACTCTATATATGGACCTGGA+TGG | + | chr2_4:58937199-58937218 | None:intergenic | 40.0% | |
| GAGTATAGGCCAATTGCAAT+TGG | - | chr2_4:58937215-58937234 | Msa0338580:intron | 40.0% | |
| ATCATTGTCTAAGCCAACTG+CGG | - | chr2_4:58937470-58937489 | Msa0338580:intron | 40.0% | |
| GGAAATGGAAAAGTGGAGAT+TGG | - | chr2_4:58937491-58937510 | Msa0338580:intron | 40.0% | |
| ! | TGTGGGCTATTATGAAAGTG+TGG | + | chr2_4:58937780-58937799 | None:intergenic | 40.0% |
| CTTGTGAGTGTACTCCATAT+AGG | + | chr2_4:58938223-58938242 | None:intergenic | 40.0% | |
| CCGATTCTTCTCACATCTAA+TGG | - | chr2_4:58938359-58938378 | Msa0338580:intron | 40.0% | |
| TAAGATTGATAGGCAGAGTG+AGG | + | chr2_4:58938394-58938413 | None:intergenic | 40.0% | |
| TGTTGGGGATGAAATTGGTT+GGG | + | chr2_4:58938743-58938762 | None:intergenic | 40.0% | |
| TTGTTGGGGATGAAATTGGT+TGG | + | chr2_4:58938744-58938763 | None:intergenic | 40.0% | |
| !!! | GGTTTTGTTGGGGATGAAAT+TGG | + | chr2_4:58938748-58938767 | None:intergenic | 40.0% |
| ! | TGTCATTTGGTGGAAATGTG+GGG | + | chr2_4:58938777-58938796 | None:intergenic | 40.0% |
| TCAGGGGTAGTATTGTCATT+TGG | + | chr2_4:58938790-58938809 | None:intergenic | 40.0% | |
| TTGAACTATGTCTGTTGTGG+GGG | + | chr2_4:58938821-58938840 | None:intergenic | 40.0% | |
| CAGCTCCTAACCATAAAATC+CGG | - | chr2_4:58938919-58938938 | Msa0338580:intron | 40.0% | |
| TTTCATTGGAGAGTGAGTTG+AGG | + | chr2_4:58939002-58939021 | None:intergenic | 40.0% | |
| TTCCAGCAAGTGTTCTTACA+GGG | + | chr2_4:58939098-58939117 | None:intergenic | 40.0% | |
| TTTCCAGCAAGTGTTCTTAC+AGG | + | chr2_4:58939099-58939118 | None:intergenic | 40.0% | |
| GAAAATTGTTGCTGAGGTTC+CGG | - | chr2_4:58939284-58939303 | Msa0338580:CDS | 40.0% | |
| !!! | GGTTTTTCTTTTTCAGGCGT+CGG | + | chr2_4:58939348-58939367 | None:intergenic | 40.0% |
| GATTGACATGAGTGGAACTT+GGG | - | chr2_4:58939431-58939450 | Msa0338580:CDS | 40.0% | |
| TGTTGTTGGAATTGTCTTCG+TGG | - | chr2_4:58939461-58939480 | Msa0338580:CDS | 40.0% | |
| GTTGTTGGAATTGTCTTCGT+GGG | - | chr2_4:58939462-58939481 | Msa0338580:CDS | 40.0% | |
| CGTGTTGGGAGAATACAATG+AGG | + | chr2_4:58935428-58935447 | None:intergenic | 45.0% | |
| !!! | GATGTTGGTGATGCTGCTTT+TGG | + | chr2_4:58935499-58935518 | None:intergenic | 45.0% |
| ! | TCTGGTAATGTCGGGACTAA+TGG | + | chr2_4:58935529-58935548 | None:intergenic | 45.0% |
| ! | TCTGAGGTGTCTGGTAATGT+CGG | + | chr2_4:58935538-58935557 | None:intergenic | 45.0% |
| CTCATTTCACCAAAAAGCGG+CGG | - | chr2_4:58935664-58935683 | Msa0338580:CDS | 45.0% | |
| TGTGAGAAAGCTGAGTCATC+CGG | + | chr2_4:58935706-58935725 | None:intergenic | 45.0% | |
| GCTTTCTCACATCTCAAAGC+AGG | - | chr2_4:58935715-58935734 | Msa0338580:CDS | 45.0% | |
| TAGTAACCCTGTTGAGACAG+TGG | - | chr2_4:58935831-58935850 | Msa0338580:CDS | 45.0% | |
| ! | TCTGGAGCAGTGAGTTTACT+TGG | - | chr2_4:58936138-58936157 | Msa0338580:CDS | 45.0% |
| ! | TGGAGTAGCTTTTGTTGCAG+TGG | - | chr2_4:58936188-58936207 | Msa0338580:intron | 45.0% |
| AGTATCACAAGGGCCTATAG+AGG | - | chr2_4:58936981-58937000 | Msa0338580:intron | 45.0% | |
| GTATCACAAGGGCCTATAGA+GGG | - | chr2_4:58936982-58937001 | Msa0338580:intron | 45.0% | |
| ACAAATCCAGGTCCCTCTAT+AGG | + | chr2_4:58936997-58937016 | None:intergenic | 45.0% | |
| TGATTGCGGTAAATCCATCC+AGG | - | chr2_4:58937182-58937201 | Msa0338580:intron | 45.0% | |
| ! | CACTTTTCCATTTCCGCAGT+TGG | + | chr2_4:58937486-58937505 | None:intergenic | 45.0% |
| CAACTGCGGAAATGGAAAAG+TGG | - | chr2_4:58937484-58937503 | Msa0338580:intron | 45.0% | |
| ! | TTATTGGCTGGTGAGTGGTT+TGG | + | chr2_4:58938483-58938502 | None:intergenic | 45.0% |
| ! | GACAATTATTGGCTGGTGAG+TGG | + | chr2_4:58938488-58938507 | None:intergenic | 45.0% |
| GATGAAATTGGTTGGGTAGG+GGG | + | chr2_4:58938736-58938755 | None:intergenic | 45.0% | |
| GGATGAAATTGGTTGGGTAG+GGG | + | chr2_4:58938737-58938756 | None:intergenic | 45.0% | |
| GGGATGAAATTGGTTGGGTA+GGG | + | chr2_4:58938738-58938757 | None:intergenic | 45.0% | |
| !!! | TGGGGACTAAGGGTTTTGTT+GGG | + | chr2_4:58938759-58938778 | None:intergenic | 45.0% |
| ! | GGGGTAGTATTGTCATTTGG+TGG | + | chr2_4:58938787-58938806 | None:intergenic | 45.0% |
| !! | GAGTTGTTTTCATGAGACGG+AGG | + | chr2_4:58938876-58938895 | None:intergenic | 45.0% |
| CTCCTAACCATAAAATCCGG+CGG | - | chr2_4:58938922-58938941 | Msa0338580:intron | 45.0% | |
| !! | TGGTTTGAGTTCTGAGAAGG+CGG | + | chr2_4:58938974-58938993 | None:intergenic | 45.0% |
| CCTTCTCAGAACTCAAACCA+GGG | - | chr2_4:58938974-58938993 | Msa0338580:CDS | 45.0% | |
| AGCAAGTGTTCTTACAGGGT+TGG | + | chr2_4:58939094-58939113 | None:intergenic | 45.0% | |
| AACCCTGTAAGAACACTTGC+TGG | - | chr2_4:58939093-58939112 | Msa0338580:CDS | 45.0% | |
| ! | ACACTTGCTGGAAACAAACC+TGG | - | chr2_4:58939105-58939124 | Msa0338580:CDS | 45.0% |
| ACCAGCTATTGCTGATGCTA+AGG | - | chr2_4:58939320-58939339 | Msa0338580:CDS | 45.0% | |
| TCAAGATTCAACAACGTCGC+AGG | - | chr2_4:58939377-58939396 | Msa0338580:CDS | 45.0% | |
| ATAGCACTAGAAGTCACAGC+AGG | + | chr2_4:58939408-58939427 | None:intergenic | 45.0% | |
| CTGTGACTTCTAGTGCTATG+AGG | - | chr2_4:58939409-58939428 | Msa0338580:CDS | 45.0% | |
| GCTATGAGGATTGACATGAG+TGG | - | chr2_4:58939423-58939442 | Msa0338580:CDS | 45.0% | |
| GGATTGACATGAGTGGAACT+TGG | - | chr2_4:58939430-58939449 | Msa0338580:CDS | 45.0% | |
| !! | GAAAAAAATAAATTAAAATA+TGG | + | chr2_4:58936287-58936306 | None:intergenic | 5.0% |
| !! | AAATTATGTTAATTTAAATA+GGG | + | chr2_4:58936601-58936620 | None:intergenic | 5.0% |
| !! | TTTGGTGCTGGGGCATGTTT+CGG | + | chr2_4:58935481-58935500 | None:intergenic | 50.0% |
| !!! | TGATGCTGCTTTTGGTGCTG+GGG | + | chr2_4:58935491-58935510 | None:intergenic | 50.0% |
| !!! | GTGATGCTGCTTTTGGTGCT+GGG | + | chr2_4:58935492-58935511 | None:intergenic | 50.0% |
| ! | CTGAGGTGTCTGGTAATGTC+GGG | + | chr2_4:58935537-58935556 | None:intergenic | 50.0% |
| !! | TTTTGTTATGTCGTCCGGGG+TGG | + | chr2_4:58935563-58935582 | None:intergenic | 50.0% |
| TACCAGCCACTGTCTCAACA+GGG | + | chr2_4:58935840-58935859 | None:intergenic | 50.0% | |
| TTACCAGCCACTGTCTCAAC+AGG | + | chr2_4:58935841-58935860 | None:intergenic | 50.0% | |
| !! | AGGAGGGTGAGAGTATCACA+AGG | - | chr2_4:58936970-58936989 | Msa0338580:intron | 50.0% |
| !! | GGAGGGTGAGAGTATCACAA+GGG | - | chr2_4:58936971-58936990 | Msa0338580:intron | 50.0% |
| TGCGTGACTGCAACAAATCC+AGG | + | chr2_4:58937009-58937028 | None:intergenic | 50.0% | |
| GTCTAAGCCAACTGCGGAAA+TGG | - | chr2_4:58937476-58937495 | Msa0338580:intron | 50.0% | |
| !! | GATTGAATTGGTGACGTGGC+AGG | + | chr2_4:58938712-58938731 | None:intergenic | 50.0% |
| !! | GGGTGATTGAATTGGTGACG+TGG | + | chr2_4:58938716-58938735 | None:intergenic | 50.0% |
| TGGGTAGGGGGTGATTGAAT+TGG | + | chr2_4:58938724-58938743 | None:intergenic | 50.0% | |
| GGGGATGAAATTGGTTGGGT+AGG | + | chr2_4:58938739-58938758 | None:intergenic | 50.0% | |
| !!! | GGGGACTAAGGGTTTTGTTG+GGG | + | chr2_4:58938758-58938777 | None:intergenic | 50.0% |
| !! | GTGGGGACTAAGGGTTTTGT+TGG | + | chr2_4:58938760-58938779 | None:intergenic | 50.0% |
| GGTGGAAATGTGGGGACTAA+GGG | + | chr2_4:58938769-58938788 | None:intergenic | 50.0% | |
| TGGTGGAAATGTGGGGACTA+AGG | + | chr2_4:58938770-58938789 | None:intergenic | 50.0% | |
| ACTATGTCTGTTGTGGGGGT+GGG | + | chr2_4:58938817-58938836 | None:intergenic | 50.0% | |
| AACTATGTCTGTTGTGGGGG+TGG | + | chr2_4:58938818-58938837 | None:intergenic | 50.0% | |
| ! | TTAGGAGCTGTGAGTTGAGC+TGG | + | chr2_4:58938909-58938928 | None:intergenic | 50.0% |
| ! | AGCCGCCGGATTTTATGGTT+AGG | + | chr2_4:58938927-58938946 | None:intergenic | 50.0% |
| ! | CGTTAAGCCGCCGGATTTTA+TGG | + | chr2_4:58938932-58938951 | None:intergenic | 50.0% |
| ! | TTCTGAGAAGGCGGAATCGT+CGG | + | chr2_4:58938965-58938984 | None:intergenic | 50.0% |
| GCCTTCTCAGAACTCAAACC+AGG | - | chr2_4:58938973-58938992 | Msa0338580:CDS | 50.0% | |
| !! | CCCTGGTTTGAGTTCTGAGA+AGG | + | chr2_4:58938977-58938996 | None:intergenic | 50.0% |
| GCCTTAGCATCAGCAATAGC+TGG | + | chr2_4:58939324-58939343 | None:intergenic | 50.0% | |
| TGACATGAGTGGAACTTGGG+TGG | - | chr2_4:58939434-58939453 | Msa0338580:CDS | 50.0% | |
| !! | ACTTGGGTGGCACTTGTTGT+TGG | - | chr2_4:58939447-58939466 | Msa0338580:CDS | 50.0% |
| GTTGGAATTGTCTTCGTGGG+AGG | - | chr2_4:58939465-58939484 | Msa0338580:CDS | 50.0% | |
| ! | GTTGCTGTTGCTGCCGTGTT+GGG | + | chr2_4:58935442-58935461 | None:intergenic | 55.0% |
| ! | TGTTGCTGTTGCTGCCGTGT+TGG | + | chr2_4:58935443-58935462 | None:intergenic | 55.0% |
| !!! | GGTGATGCTGCTTTTGGTGC+TGG | + | chr2_4:58935493-58935512 | None:intergenic | 55.0% |
| AGACACCTCAGATTCCACCC+CGG | - | chr2_4:58935546-58935565 | Msa0338580:CDS | 55.0% | |
| AACCCTGTTGAGACAGTGGC+TGG | - | chr2_4:58935835-58935854 | Msa0338580:CDS | 55.0% | |
| GCTATTGCTTCCGCAGCAAC+AGG | + | chr2_4:58936045-58936064 | None:intergenic | 55.0% | |
| AACTCACACACACAGCTGCG+AGG | + | chr2_4:58938032-58938051 | None:intergenic | 55.0% | |
| TATGTCTGTTGTGGGGGTGG+GGG | + | chr2_4:58938815-58938834 | None:intergenic | 55.0% | |
| CTATGTCTGTTGTGGGGGTG+GGG | + | chr2_4:58938816-58938835 | None:intergenic | 55.0% | |
| TCTGAGAAGGCGGAATCGTC+GGG | + | chr2_4:58938964-58938983 | None:intergenic | 55.0% | |
| ! | GAGAGTGAGTTGAGGAACCC+TGG | + | chr2_4:58938994-58939013 | None:intergenic | 55.0% |
| TGTTGCTGAGGTTCCGGCTT+TGG | - | chr2_4:58939290-58939309 | Msa0338580:CDS | 55.0% | |
| GCATCAGCAATAGCTGGTGC+TGG | + | chr2_4:58939318-58939337 | None:intergenic | 55.0% | |
| GCATGTTTCGGTGACGCTGC+TGG | + | chr2_4:58935469-58935488 | None:intergenic | 60.0% | |
| ! | GGGGTGGAATCTGAGGTGTC+TGG | + | chr2_4:58935547-58935566 | None:intergenic | 60.0% |
| TGCTGCTGCTCCTGTTGCTG+CGG | - | chr2_4:58936032-58936051 | Msa0338580:CDS | 60.0% | |
| CAAGGGCCTATAGAGGGACC+TGG | - | chr2_4:58936988-58937007 | Msa0338580:intron | 60.0% | |
| TTGTGGGGGTGGGGGTTTCA+GGG | + | chr2_4:58938807-58938826 | None:intergenic | 60.0% | |
| TGCGAGGATCGTTAAGCCGC+CGG | + | chr2_4:58938941-58938960 | None:intergenic | 60.0% | |
| GTCGTCCGGGGTGGAATCTG+AGG | + | chr2_4:58935554-58935573 | None:intergenic | 65.0% | |
| GCAGCAACAGGAGCAGCAGC+AGG | + | chr2_4:58936033-58936052 | None:intergenic | 65.0% | |
| TGTGGGGGTGGGGGTTTCAG+GGG | + | chr2_4:58938806-58938825 | None:intergenic | 65.0% | |
| GTTGTGGGGGTGGGGGTTTC+AGG | + | chr2_4:58938808-58938827 | None:intergenic | 65.0% | |
| AGGCGGAATCGTCGGGTGCG+AGG | + | chr2_4:58938957-58938976 | None:intergenic | 70.0% | |
| !! | GCTGGTGCTGGCGCCAAAGC+CGG | + | chr2_4:58939306-58939325 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 58935379 | 58939506 | 58935379 | ID=Msa0338580;Name=Msa0338580 |
| chr2_4 | mRNA | 58935379 | 58939506 | 58935379 | ID=Msa0338580-mRNA-1;Parent=Msa0338580;Name=Msa0338580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0|4|0|508 |
| chr2_4 | exon | 58939266 | 58939506 | 58939266 | ID=Msa0338580-mRNA-1:exon:18252;Parent=Msa0338580-mRNA-1 |
| chr2_4 | exon | 58938937 | 58939184 | 58938937 | ID=Msa0338580-mRNA-1:exon:18251;Parent=Msa0338580-mRNA-1 |
| chr2_4 | exon | 58938663 | 58938891 | 58938663 | ID=Msa0338580-mRNA-1:exon:18250;Parent=Msa0338580-mRNA-1 |
| chr2_4 | exon | 58935379 | 58936187 | 58935379 | ID=Msa0338580-mRNA-1:exon:18249;Parent=Msa0338580-mRNA-1 |
| chr2_4 | CDS | 58939266 | 58939506 | 58939266 | ID=Msa0338580-mRNA-1:cds;Parent=Msa0338580-mRNA-1 |
| chr2_4 | CDS | 58938937 | 58939184 | 58938937 | ID=Msa0338580-mRNA-1:cds;Parent=Msa0338580-mRNA-1 |
| chr2_4 | CDS | 58938663 | 58938891 | 58938663 | ID=Msa0338580-mRNA-1:cds;Parent=Msa0338580-mRNA-1 |
| chr2_4 | CDS | 58935379 | 58936187 | 58935379 | ID=Msa0338580-mRNA-1:cds;Parent=Msa0338580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
