Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602110 | XP_003606412.1 | 47.718 | 241 | 88 | 8 | 50 | 255 | 53 | 290 | 2.28e-52 | 190 |
| Msa0602110 | XP_003606412.1 | 97.826 | 276 | 6 | 0 | 234 | 509 | 16 | 291 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602110 | sp|Q8LEE9|FLA12_ARATH | 54.000 | 150 | 67 | 2 | 291 | 439 | 39 | 187 | 1.14e-43 | 157 |
| Msa0602110 | sp|Q8LEE9|FLA12_ARATH | 44.295 | 149 | 63 | 3 | 67 | 195 | 39 | 187 | 2.06e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142380 | Msa0602110 | 0.840354 | 9.147112e-58 | -8.615850e-47 |
| Msa0194000 | Msa0602110 | 0.899237 | 2.416560e-77 | -8.615850e-47 |
| Msa0221820 | Msa0602110 | 0.820010 | 8.596591e-53 | -8.615850e-47 |
| Msa0235870 | Msa0602110 | 0.892218 | 1.942931e-74 | -8.615850e-47 |
| Msa0250450 | Msa0602110 | 0.831075 | 2.050334e-55 | -8.615850e-47 |
| Msa0263440 | Msa0602110 | 0.886674 | 2.784656e-72 | -8.615850e-47 |
| Msa0269380 | Msa0602110 | 0.835972 | 1.228730e-56 | -8.615850e-47 |
| Msa0288900 | Msa0602110 | 0.900005 | 1.128567e-77 | -8.615850e-47 |
| Msa0301030 | Msa0602110 | 0.893258 | 7.430113e-75 | -8.615850e-47 |
| Msa0314220 | Msa0602110 | 0.893897 | 4.095770e-75 | -8.615850e-47 |
| Msa0314330 | Msa0602110 | 0.878759 | 2.165832e-69 | -8.615850e-47 |
| Msa0327020 | Msa0602110 | 0.844433 | 7.582032e-59 | -8.615850e-47 |
| Msa0338580 | Msa0602110 | 0.853882 | 1.780445e-61 | -8.615850e-47 |
| Msa0485970 | Msa0602110 | 0.862267 | 5.720455e-64 | -8.615850e-47 |
| Msa0547390 | Msa0602110 | 0.916746 | 1.228617e-85 | -8.615850e-47 |
| Msa0564950 | Msa0602110 | 0.828881 | 7.025116e-55 | -8.615850e-47 |
| Msa0565260 | Msa0602110 | 0.900879 | 4.706178e-78 | -8.615850e-47 |
| Msa0580580 | Msa0602110 | 0.842709 | 2.190951e-58 | -8.615850e-47 |
| Msa0602110 | Msa0618050 | 0.849557 | 2.995022e-60 | -8.615850e-47 |
| Msa0602110 | Msa0618600 | 0.924905 | 3.769524e-90 | -8.615850e-47 |
| Msa0602110 | Msa0643240 | 0.940808 | 1.236216e-100 | -8.615850e-47 |
| Msa0602110 | Msa0657380 | 0.906057 | 2.227714e-80 | -8.615850e-47 |
| Msa0602110 | Msa0682920 | 0.818368 | 2.033384e-52 | -8.615850e-47 |
| Msa0602110 | Msa0708510 | 0.928724 | 1.924045e-92 | -8.615850e-47 |
| Msa0602110 | Msa0792190 | 0.837641 | 4.610097e-57 | -8.615850e-47 |
| Msa0602110 | Msa1035290 | 0.811266 | 7.628404e-51 | -8.615850e-47 |
| Msa0602110 | Msa1075380 | 0.825359 | 4.893777e-54 | -8.615850e-47 |
| Msa0602110 | Msa1116460 | 0.827331 | 1.659241e-54 | -8.615850e-47 |
| Msa0602110 | Msa1199250 | 0.887562 | 1.279454e-72 | -8.615850e-47 |
| Msa0602110 | Msa1199260 | 0.819225 | 1.298403e-52 | -8.615850e-47 |
| Msa0602110 | Msa1252480 | 0.878884 | 1.956519e-69 | -8.615850e-47 |
| Msa0602110 | Msa1267350 | 0.838169 | 3.374167e-57 | -8.615850e-47 |
| Msa0602110 | Msa1293220 | 0.904616 | 1.018598e-79 | -8.615850e-47 |
| Msa0602110 | Msa1421310 | 0.837606 | 4.705898e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602110 | MtrunA17_Chr4g0029441 | 97.826 | 276 | 6 | 0 | 234 | 509 | 16 | 291 | 0.0 | 536 |
| Msa0602110 | MtrunA17_Chr4g0029441 | 47.718 | 241 | 88 | 8 | 50 | 255 | 53 | 290 | 2.10e-56 | 190 |
| Msa0602110 | MtrunA17_Chr4g0029501 | 93.818 | 275 | 17 | 0 | 234 | 508 | 16 | 290 | 8.34e-171 | 483 |
| Msa0602110 | MtrunA17_Chr4g0029501 | 48.689 | 267 | 96 | 10 | 14 | 244 | 18 | 279 | 8.75e-58 | 193 |
| Msa0602110 | MtrunA17_Chr4g0029431 | 90.119 | 253 | 5 | 2 | 1 | 233 | 1 | 253 | 1.12e-151 | 434 |
| Msa0602110 | MtrunA17_Chr4g0029431 | 55.330 | 197 | 79 | 3 | 248 | 440 | 25 | 216 | 2.10e-63 | 207 |
| Msa0602110 | MtrunA17_Chr4g0026611 | 79.422 | 277 | 54 | 2 | 234 | 507 | 18 | 294 | 8.03e-136 | 394 |
| Msa0602110 | MtrunA17_Chr4g0026611 | 48.536 | 239 | 86 | 7 | 1 | 204 | 3 | 239 | 8.02e-54 | 183 |
| Msa0602110 | MtrunA17_Chr2g0326411 | 61.232 | 276 | 95 | 6 | 234 | 503 | 16 | 285 | 1.46e-91 | 281 |
| Msa0602110 | MtrunA17_Chr2g0326411 | 45.833 | 216 | 89 | 5 | 2 | 194 | 6 | 216 | 7.22e-47 | 164 |
| Msa0602110 | MtrunA17_Chr2g0326421 | 57.588 | 257 | 74 | 8 | 8 | 235 | 6 | 256 | 4.68e-73 | 233 |
| Msa0602110 | MtrunA17_Chr2g0326421 | 47.036 | 253 | 118 | 5 | 260 | 507 | 41 | 282 | 8.76e-66 | 214 |
| Msa0602110 | MtrunA17_Chr8g0379611 | 56.667 | 210 | 78 | 3 | 240 | 438 | 17 | 224 | 3.35e-71 | 229 |
| Msa0602110 | MtrunA17_Chr8g0379611 | 48.583 | 247 | 85 | 7 | 16 | 228 | 16 | 254 | 1.48e-56 | 191 |
| Msa0602110 | MtrunA17_Chr2g0284411 | 58.000 | 200 | 75 | 2 | 291 | 490 | 68 | 258 | 8.88e-70 | 224 |
| Msa0602110 | MtrunA17_Chr2g0284411 | 50.199 | 251 | 99 | 5 | 1 | 230 | 1 | 246 | 1.42e-55 | 187 |
| Msa0602110 | MtrunA17_Chr2g0284431 | 58.000 | 200 | 75 | 2 | 291 | 490 | 89 | 279 | 6.69e-69 | 223 |
| Msa0602110 | MtrunA17_Chr2g0284431 | 51.394 | 251 | 96 | 5 | 1 | 230 | 22 | 267 | 4.92e-56 | 189 |
| Msa0602110 | MtrunA17_Chr2g0284451 | 45.862 | 290 | 116 | 11 | 234 | 501 | 18 | 288 | 2.00e-64 | 211 |
| Msa0602110 | MtrunA17_Chr2g0284451 | 40.741 | 270 | 110 | 8 | 1 | 230 | 2 | 261 | 2.99e-46 | 163 |
| Msa0602110 | MtrunA17_Chr8g0379621 | 56.281 | 199 | 67 | 7 | 249 | 438 | 55 | 242 | 6.79e-62 | 205 |
| Msa0602110 | MtrunA17_Chr8g0379621 | 48.402 | 219 | 82 | 6 | 38 | 225 | 55 | 273 | 1.99e-48 | 169 |
| Msa0602110 | MtrunA17_Chr8g0379631 | 51.754 | 228 | 85 | 7 | 234 | 438 | 17 | 242 | 2.80e-61 | 203 |
| Msa0602110 | MtrunA17_Chr8g0379631 | 48.430 | 223 | 82 | 7 | 36 | 225 | 51 | 273 | 2.09e-48 | 169 |
| Msa0602110 | MtrunA17_Chr4g0029331 | 50.481 | 208 | 71 | 5 | 236 | 443 | 37 | 212 | 9.64e-54 | 182 |
| Msa0602110 | MtrunA17_Chr4g0029331 | 45.413 | 218 | 70 | 6 | 1 | 198 | 24 | 212 | 3.55e-46 | 162 |
| Msa0602110 | MtrunA17_Chr2g0326431 | 54.362 | 149 | 67 | 1 | 291 | 439 | 41 | 188 | 1.14e-47 | 165 |
| Msa0602110 | MtrunA17_Chr2g0326431 | 44.221 | 199 | 84 | 4 | 67 | 239 | 41 | 238 | 3.66e-39 | 142 |
| Msa0602110 | MtrunA17_Chr7g0263981 | 44.304 | 158 | 86 | 2 | 283 | 439 | 32 | 188 | 5.65e-36 | 134 |
| Msa0602110 | MtrunA17_Chr7g0263981 | 42.581 | 155 | 67 | 3 | 63 | 196 | 36 | 189 | 5.29e-29 | 115 |
| Msa0602110 | MtrunA17_Chr2g0325021 | 39.394 | 198 | 112 | 2 | 284 | 474 | 31 | 227 | 1.74e-28 | 113 |
| Msa0602110 | MtrunA17_Chr2g0325021 | 35.000 | 160 | 85 | 2 | 56 | 196 | 27 | 186 | 5.84e-23 | 97.8 |
| Msa0602110 | MtrunA17_Chr7g0246041 | 32.967 | 182 | 115 | 3 | 284 | 465 | 177 | 351 | 9.46e-18 | 85.5 |
| Msa0602110 | MtrunA17_Chr7g0246041 | 32.558 | 172 | 93 | 5 | 67 | 217 | 184 | 353 | 3.45e-12 | 68.2 |
| Msa0602110 | MtrunA17_Chr5g0448001 | 30.233 | 215 | 136 | 6 | 290 | 499 | 47 | 252 | 7.22e-16 | 77.8 |
| Msa0602110 | MtrunA17_Chr5g0448001 | 31.677 | 161 | 89 | 5 | 67 | 207 | 48 | 207 | 9.53e-12 | 65.5 |
| Msa0602110 | MtrunA17_Chr5g0448211 | 28.934 | 197 | 125 | 7 | 258 | 453 | 167 | 349 | 1.24e-11 | 66.6 |
| Msa0602110 | MtrunA17_Chr2g0296571 | 31.169 | 154 | 99 | 4 | 290 | 439 | 194 | 344 | 1.38e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602110 | AT5G60490.1 | 54.000 | 150 | 67 | 2 | 291 | 439 | 39 | 187 | 1.16e-44 | 157 |
| Msa0602110 | AT5G60490.1 | 44.295 | 149 | 63 | 3 | 67 | 195 | 39 | 187 | 2.09e-32 | 124 |
| Msa0602110 | AT5G03170.1 | 47.305 | 167 | 87 | 1 | 284 | 449 | 29 | 195 | 3.18e-44 | 156 |
| Msa0602110 | AT5G03170.1 | 40.341 | 176 | 83 | 3 | 53 | 206 | 22 | 197 | 5.35e-34 | 129 |
| Msa0602110 | AT2G20520.1 | 36.134 | 238 | 130 | 7 | 270 | 504 | 19 | 237 | 5.49e-27 | 109 |
| Msa0602110 | AT2G20520.1 | 34.375 | 192 | 97 | 4 | 60 | 223 | 31 | 221 | 6.13e-22 | 95.5 |
| Msa0602110 | AT5G44130.1 | 36.816 | 201 | 113 | 6 | 290 | 486 | 35 | 225 | 1.32e-26 | 108 |
| Msa0602110 | AT5G44130.1 | 33.333 | 180 | 92 | 5 | 67 | 222 | 36 | 211 | 1.09e-19 | 89.0 |
| Msa0602110 | AT1G03870.1 | 33.333 | 213 | 131 | 5 | 290 | 501 | 38 | 240 | 4.15e-24 | 101 |
| Msa0602110 | AT1G03870.1 | 28.788 | 198 | 115 | 5 | 67 | 239 | 39 | 235 | 1.50e-17 | 82.8 |
| Msa0602110 | AT3G60900.1 | 29.121 | 182 | 124 | 2 | 284 | 465 | 183 | 359 | 2.93e-15 | 78.2 |
| Msa0602110 | AT3G46550.1 | 30.645 | 186 | 115 | 7 | 276 | 451 | 193 | 374 | 1.00e-12 | 70.5 |
| Msa0602110 | AT2G04780.1 | 30.263 | 152 | 100 | 3 | 290 | 439 | 45 | 192 | 6.45e-12 | 66.2 |
| Msa0602110 | AT2G04780.2 | 30.263 | 152 | 100 | 3 | 290 | 439 | 45 | 192 | 6.45e-12 | 66.2 |
Find 113 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGATGGTGCTGTTGCTTT+TGG | 0.250966 | 4_2:-45357221 | None:intergenic |
| AACATTCAGTTCCACCTTTC+CGG | 0.262448 | 4_2:-45360904 | None:intergenic |
| TACCTTGATCCTGATCATTT+TGG | 0.263017 | 4_2:-45357844 | None:intergenic |
| GGCTCCTAAAGCTGCTAATA+AGG | 0.272377 | 4_2:+45357796 | Msa0602110:CDS |
| CCAACTTAATTCACAGCTAT+TGG | 0.284556 | 4_2:+45360686 | Msa0602110:CDS |
| CAAGCTCGCGATTTATCATT+TGG | 0.291478 | 4_2:+45357697 | Msa0602110:CDS |
| TCTGTTGAGTCTGGTGATTC+AGG | 0.294510 | 4_2:-45357266 | None:intergenic |
| CCGGATGACAGCGCCTTTGC+AGG | 0.296032 | 4_2:+45360741 | Msa0602110:CDS |
| ATAAATAGCAAGACGTTTAT+CGG | 0.298196 | 4_2:-45360997 | None:intergenic |
| ATCTGATGATGTATCTTTAT+CGG | 0.306273 | 4_2:-45361132 | None:intergenic |
| CGCTACTAAGGCACCTGCTT+TGG | 0.312281 | 4_2:+45357748 | Msa0602110:CDS |
| ACCGGGGAAGGCACCATCTT+TGG | 0.312457 | 4_2:+45361070 | Msa0602110:CDS |
| GCTGTGTCGGTTGAAGGTTC+TGG | 0.334371 | 4_2:-45361095 | None:intergenic |
| TCAACAGTGCCTGCTGTGTC+AGG | 0.335761 | 4_2:-45360588 | None:intergenic |
| CGTCTTGCTATTTATAAAGT+TGG | 0.340020 | 4_2:+45361005 | Msa0602110:CDS |
| TTCTCCTTATTAGCAGCTTT+AGG | 0.349370 | 4_2:-45357800 | None:intergenic |
| TTACCAGCTATTGTTTGAAC+AGG | 0.356173 | 4_2:-45357569 | None:intergenic |
| GCCTTTGCTGTGTCGGTTGA+AGG | 0.358908 | 4_2:-45361101 | None:intergenic |
| ACATTCAGTTCCACCTTTCC+GGG | 0.360231 | 4_2:-45360903 | None:intergenic |
| CATCACAACAATCCTCAAAA+AGG | 0.364595 | 4_2:+45357304 | Msa0602110:CDS |
| AAGGAAGGTACCAATGGTTT+AGG | 0.375784 | 4_2:-45360540 | None:intergenic |
| CCTGCAAAGGCGCTGTCATC+CGG | 0.387064 | 4_2:-45360741 | None:intergenic |
| AACCCTGTGAGAACACTTGC+TGG | 0.387148 | 4_2:+45360873 | Msa0602110:CDS |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4_2:+45361025 | Msa0602110:CDS |
| AGGATTGTTGTGATGTCGTC+AGG | 0.395586 | 4_2:-45357296 | None:intergenic |
| AACAATGTCAGTCTTTCAAC+CGG | 0.416183 | 4_2:+45357632 | Msa0602110:CDS |
| GTTGTTACTGCTTCCGTTGT+GGG | 0.419419 | 4_2:+45357656 | Msa0602110:CDS |
| TCTGATGATGTATCTTTATC+GGG | 0.424899 | 4_2:-45361131 | None:intergenic |
| CTTGAAAATGCTGAATCGTC+TGG | 0.426953 | 4_2:-45357434 | None:intergenic |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.431548 | 4_2:-45360513 | None:intergenic |
| GGCTCTATCAAGATTGTGTA+TGG | 0.434280 | 4_2:+45361191 | Msa0602110:CDS |
| GCTGGTAGTGTAGGTTGTAT+AGG | 0.438970 | 4_2:-45360495 | None:intergenic |
| TGTATGCCTTCGCCTTTCTC+AGG | 0.442653 | 4_2:-45360623 | None:intergenic |
| GGGACGGAGTCTGTTGAGTC+TGG | 0.453003 | 4_2:-45357275 | None:intergenic |
| AACTCGTACTGCTGCTGCTA+AGG | 0.455742 | 4_2:+45357775 | Msa0602110:CDS |
| AATGTGGGGACTAATGATTT+TGG | 0.458446 | 4_2:-45357242 | None:intergenic |
| AATCCAACTGAAAACAAGTC+TGG | 0.463708 | 4_2:+45361170 | Msa0602110:CDS |
| GTCCATCGGAAAGAGAGTTA+AGG | 0.464359 | 4_2:-45360779 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.467213 | 4_2:-45361071 | None:intergenic |
| CCAATAGCTGTGAATTAAGT+TGG | 0.471737 | 4_2:-45360686 | None:intergenic |
| TTTGAGCTCGCTACATATTG+AGG | 0.476279 | 4_2:-45357527 | None:intergenic |
| GGAGCTGCAGCTGGTGTGGT+TGG | 0.478200 | 4_2:-45360519 | None:intergenic |
| CGTTGCTAAGGCACCGGGGA+AGG | 0.485444 | 4_2:+45361058 | Msa0602110:CDS |
| TCGTGATTTCTTCGCTACTA+AGG | 0.488348 | 4_2:+45357736 | Msa0602110:CDS |
| TGATCAAGACCAAAATGATC+AGG | 0.490187 | 4_2:+45357835 | Msa0602110:CDS |
| GTGGTTGGAGCTGGTAGTGT+AGG | 0.493589 | 4_2:-45360504 | None:intergenic |
| AACCCTGTTCAAACAATAGC+TGG | 0.497527 | 4_2:+45357566 | Msa0602110:CDS |
| TTCCTTAACTCTCTTTCCGA+TGG | 0.505029 | 4_2:+45360777 | Msa0602110:CDS |
| GCCTTTGCAGGACTCAAAGC+AGG | 0.505794 | 4_2:+45360753 | Msa0602110:CDS |
| GATGTATCTTTATCGGGTTT+AGG | 0.505916 | 4_2:-45361125 | None:intergenic |
| GAAGGTTCTGGCGCCAAAGA+TGG | 0.511510 | 4_2:-45361083 | None:intergenic |
| ATGATTCAGGTGCTTGTGAA+AGG | 0.511644 | 4_2:-45357166 | None:intergenic |
| TTTAGGCGCCTTTGCTGTGT+CGG | 0.515537 | 4_2:-45361108 | None:intergenic |
| GCTCCAGCAAGTGTTCTCAC+AGG | 0.519482 | 4_2:-45360876 | None:intergenic |
| GAAGTGAACACGACAATCAA+TGG | 0.521491 | 4_2:+45360963 | Msa0602110:CDS |
| GGAAGTGTGAACATATCGAC+AGG | 0.523735 | 4_2:+45360939 | Msa0602110:CDS |
| GACCAAAATGATCAGGATCA+AGG | 0.527131 | 4_2:+45357842 | Msa0602110:CDS |
| GTACGAGTTGGAGCCAAAGC+AGG | 0.540425 | 4_2:-45357761 | None:intergenic |
| TGGATTAACAATTCTTGCAC+CGG | 0.540856 | 4_2:+45360722 | Msa0602110:CDS |
| GGTTGTTACTGCTTCCGTTG+TGG | 0.541810 | 4_2:+45357655 | Msa0602110:CDS |
| AGCTGCAGCTCCTAAACCAT+TGG | 0.544279 | 4_2:+45360530 | Msa0602110:CDS |
| AGTTAAGGAACCCTGCTTTG+AGG | 0.547004 | 4_2:-45357457 | None:intergenic |
| ATCACTAGGTGACTCTGGTA+AGG | 0.547862 | 4_2:-45360559 | None:intergenic |
| GTGGAATCACTAGGTGACTC+TGG | 0.548332 | 4_2:-45360564 | None:intergenic |
| CAACAGTGCCTGCTGTGTCA+GGG | 0.548988 | 4_2:-45360587 | None:intergenic |
| AGCAAGTGTTCTCACAGGGT+TGG | 0.556533 | 4_2:-45360871 | None:intergenic |
| GATTCCACCCCTGACACAGC+AGG | 0.558392 | 4_2:+45360579 | Msa0602110:CDS |
| GGTTGTATAGGAGCAGTAGC+AGG | 0.558738 | 4_2:-45360483 | None:intergenic |
| TTAGCAGCAGCAGTACGAGT+TGG | 0.559502 | 4_2:-45357773 | None:intergenic |
| GAACTGAATGTTGTGAGTTA+CGG | 0.564207 | 4_2:+45360915 | Msa0602110:CDS |
| AACAGTGCCTGCTGTGTCAG+GGG | 0.566845 | 4_2:-45360586 | None:intergenic |
| CATCGTCGGAATCCTGAGAA+AGG | 0.569747 | 4_2:+45360611 | Msa0602110:CDS |
| GCAACGGAAAAGAAATCCAT+AGG | 0.570178 | 4_2:-45361041 | None:intergenic |
| TGTTGTGATGTCGTCAGGGA+CGG | 0.571744 | 4_2:-45357291 | None:intergenic |
| CTCCAGCAAGTGTTCTCACA+GGG | 0.574947 | 4_2:-45360875 | None:intergenic |
| GTCTGGTGATTCAGGTAATG+TGG | 0.576222 | 4_2:-45357258 | None:intergenic |
| CTACATATTGAGGTAAGATG+TGG | 0.578300 | 4_2:-45357517 | None:intergenic |
| TGCTGGAGCTAAACCCGGAA+AGG | 0.580904 | 4_2:+45360890 | Msa0602110:CDS |
| TGATTCAGGTGCTTGTGAAA+GGG | 0.580955 | 4_2:-45357165 | None:intergenic |
| TACATCATCAGATTCGTCGC+AGG | 0.582113 | 4_2:+45361142 | Msa0602110:CDS |
| TCAAGATTGTGTATGGAAAG+TGG | 0.583724 | 4_2:+45361198 | Msa0602110:CDS |
| TCTGGTGATTCAGGTAATGT+GGG | 0.585032 | 4_2:-45357257 | None:intergenic |
| TATGGAAAGTGGATGTCACT+TGG | 0.586667 | 4_2:+45361209 | Msa0602110:CDS |
| CTAGGTGACTCTGGTAAGGA+AGG | 0.586930 | 4_2:-45360555 | None:intergenic |
| TCCTGCTTTGAGTCCTGCAA+AGG | 0.587782 | 4_2:-45360754 | None:intergenic |
| CTTCCCCGGTGCCTTAGCAA+CGG | 0.588968 | 4_2:-45361057 | None:intergenic |
| ACACTTGCTGGAGCTAAACC+CGG | 0.593390 | 4_2:+45360885 | Msa0602110:CDS |
| AATGGTTTAGGAGCTGCAGC+TGG | 0.597225 | 4_2:-45360528 | None:intergenic |
| TTTAGGAGCTGCAGCTGGTG+TGG | 0.597546 | 4_2:-45360523 | None:intergenic |
| ACAATGTCAGTCTTTCAACC+GGG | 0.598947 | 4_2:+45357633 | Msa0602110:CDS |
| GCAGGCACTGTTGACATCGT+CGG | 0.603537 | 4_2:+45360597 | Msa0602110:CDS |
| TACCAGCTATTGTTTGAACA+GGG | 0.607680 | 4_2:-45357568 | None:intergenic |
| ACCTTCAACCGACACAGCAA+AGG | 0.610444 | 4_2:+45361100 | Msa0602110:CDS |
| TGCTTGTGAAAGGGATAATG+TGG | 0.613574 | 4_2:-45357156 | None:intergenic |
| ATGCTGAATCGTCTGGCGCG+AGG | 0.616806 | 4_2:-45357427 | None:intergenic |
| TCTGGTAAGGAAGGTACCAA+TGG | 0.617840 | 4_2:-45360546 | None:intergenic |
| GTGTCAGGGGTGGAATCACT+AGG | 0.620878 | 4_2:-45360573 | None:intergenic |
| CGGAATCCTGAGAAAGGCGA+AGG | 0.622312 | 4_2:+45360617 | Msa0602110:CDS |
| AGTGCCTGCTGTGTCAGGGG+TGG | 0.629912 | 4_2:-45360583 | None:intergenic |
| TGGAGCTAAACCCGGAAAGG+TGG | 0.639885 | 4_2:+45360893 | Msa0602110:CDS |
| CTGAATGTTGTGAGTTACGG+AGG | 0.642257 | 4_2:+45360918 | Msa0602110:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4_2:-45360824 | None:intergenic |
| CAATGTCAGTCTTTCAACCG+GGG | 0.675430 | 4_2:+45357634 | Msa0602110:CDS |
| AGTGTACACAACACCCACAA+CGG | 0.678067 | 4_2:-45357669 | None:intergenic |
| CTGGTGATTCAGGTAATGTG+GGG | 0.679078 | 4_2:-45357256 | None:intergenic |
| GGATTGTTGTGATGTCGTCA+GGG | 0.683685 | 4_2:-45357295 | None:intergenic |
| TAGTTGAGATAAACTAGTGG+TGG | 0.696029 | 4_2:-45360457 | None:intergenic |
| AACGGAAGCAGTAACAACCC+CGG | 0.701266 | 4_2:-45357651 | None:intergenic |
| GAAGTGTGAACATATCGACA+GGG | 0.704878 | 4_2:+45360940 | Msa0602110:CDS |
| TGATAGTTGAGATAAACTAG+TGG | 0.724529 | 4_2:-45360460 | None:intergenic |
| AAGTGTGAACATATCGACAG+GGG | 0.734548 | 4_2:+45360941 | Msa0602110:CDS |
| TTTCCGTTGCTAAGGCACCG+GGG | 0.751333 | 4_2:+45361054 | Msa0602110:CDS |
| TTAGTAGCGAAGAAATCACG+AGG | 0.758452 | 4_2:-45357734 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAAAATCTATAATTTT+TGG | + | chr4_2:45358681-45358700 | Msa0602110:intron | 10.0% |
| !!! | TGAAAAAATCTATAATTTTT+GGG | + | chr4_2:45358682-45358701 | Msa0602110:intron | 10.0% |
| !!! | AATTTTATGTACAAAAAAAT+AGG | + | chr4_2:45359378-45359397 | Msa0602110:intron | 10.0% |
| !!! | TTTATTACTTTTTTAAATGT+GGG | - | chr4_2:45359738-45359757 | None:intergenic | 10.0% |
| !!! | TTTTATTACTTTTTTAAATG+TGG | - | chr4_2:45359739-45359758 | None:intergenic | 10.0% |
| !!! | TTTAATAAAAGTATCTATTA+AGG | - | chr4_2:45359980-45359999 | None:intergenic | 10.0% |
| !!! | TTTTCATTTGAATTTTTCTA+TGG | + | chr4_2:45358018-45358037 | Msa0602110:intron | 15.0% |
| !! | TTGTATAAAAAAGTTTGATT+TGG | + | chr4_2:45358081-45358100 | Msa0602110:intron | 15.0% |
| !!! | GATGATATTTCAAATTTTAT+TGG | + | chr4_2:45358103-45358122 | Msa0602110:intron | 15.0% |
| !! | TTGAATTAACTTATCATAAA+AGG | + | chr4_2:45358368-45358387 | Msa0602110:intron | 15.0% |
| !!! | CATGAATTGATTTAAAAATA+AGG | + | chr4_2:45358755-45358774 | Msa0602110:intron | 15.0% |
| !!! | TGGTAATTGAAAATTTTAAA+GGG | + | chr4_2:45358786-45358805 | Msa0602110:intron | 15.0% |
| !!! | AAGAAGATTAAATATGTTTT+TGG | - | chr4_2:45358873-45358892 | None:intergenic | 15.0% |
| !! | TAGAATAATCTAAGAATATT+TGG | + | chr4_2:45359030-45359049 | Msa0602110:intron | 15.0% |
| !! | AAACATTAATTTATCAAAAC+TGG | - | chr4_2:45359170-45359189 | None:intergenic | 15.0% |
| !!! | CATATTTAAGTATTTTTCAT+TGG | + | chr4_2:45359917-45359936 | Msa0602110:intron | 15.0% |
| !!! | TGATTTGTTAACTTAAATTT+TGG | - | chr4_2:45360204-45360223 | None:intergenic | 15.0% |
| !!! | TTTTTGTTAAAGAAAGTTTT+AGG | - | chr4_2:45360367-45360386 | None:intergenic | 15.0% |
| !! | TATACAATAAAAATGACACA+AGG | - | chr4_2:45358068-45358087 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATTACCACTTT+TGG | - | chr4_2:45358782-45358801 | None:intergenic | 20.0% |
| !!! | GTGGTAATTGAAAATTTTAA+AGG | + | chr4_2:45358785-45358804 | Msa0602110:intron | 20.0% |
| !!! | AATTGAAGGAAAATTTTAGA+AGG | + | chr4_2:45358815-45358834 | Msa0602110:intron | 20.0% |
| !!! | TGAAAAGTTGGTATATTTAT+AGG | + | chr4_2:45358845-45358864 | Msa0602110:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | + | chr4_2:45358846-45358865 | Msa0602110:intron | 20.0% |
| !! | TAAAAAAAAAGAGCAGATTA+TGG | + | chr4_2:45359133-45359152 | Msa0602110:intron | 20.0% |
| !!! | TGTGTTTCTTTTTTTCTTTT+TGG | - | chr4_2:45359536-45359555 | None:intergenic | 20.0% |
| !!! | TATTACTCATTTTTACAAGT+GGG | - | chr4_2:45359859-45359878 | None:intergenic | 20.0% |
| !! | TGTTTAATATGTAAAGATAG+TGG | + | chr4_2:45359892-45359911 | Msa0602110:intron | 20.0% |
| !! | GTTTAATATGTAAAGATAGT+GGG | + | chr4_2:45359893-45359912 | Msa0602110:intron | 20.0% |
| !! | ATGATATCATTTATCTGAAA+AGG | - | chr4_2:45360140-45360159 | None:intergenic | 20.0% |
| !! | AAGTTAACAAATCACAATTA+AGG | + | chr4_2:45360210-45360229 | Msa0602110:intron | 20.0% |
| !! | AGTTAACAAATCACAATTAA+GGG | + | chr4_2:45360211-45360230 | Msa0602110:intron | 20.0% |
| !!! | TGTTTTTTTTGGAGATTTTG+GGG | - | chr4_2:45357192-45357211 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTTGGAGATTTT+GGG | - | chr4_2:45357193-45357212 | None:intergenic | 25.0% |
| !!! | TCATGATTTCTGTTGTTTTT+AGG | - | chr4_2:45357358-45357377 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGTTTTCGTCTA+AGG | - | chr4_2:45357483-45357502 | None:intergenic | 25.0% |
| ! | ATTAAAATGCAACTTCCAAA+TGG | - | chr4_2:45357960-45357979 | None:intergenic | 25.0% |
| ! | AATGAAAAGCAACAAAAAAG+TGG | - | chr4_2:45358006-45358025 | None:intergenic | 25.0% |
| !! | AGTTAGCTTATAACTTATAG+TGG | + | chr4_2:45358173-45358192 | Msa0602110:intron | 25.0% |
| ! | TTGATTGAATTTGTAGTGTT+TGG | + | chr4_2:45358205-45358224 | Msa0602110:intron | 25.0% |
| ! | GTAGTGTTTGGTAAAATTAA+CGG | + | chr4_2:45358217-45358236 | Msa0602110:intron | 25.0% |
| ! | ATTACTTTATCATGAGCTTA+GGG | - | chr4_2:45358415-45358434 | None:intergenic | 25.0% |
| ! | CTTCTTCAATAATAATGCTA+AGG | - | chr4_2:45358590-45358609 | None:intergenic | 25.0% |
| ! | AGCATTATTATTGAAGAAGA+TGG | + | chr4_2:45358591-45358610 | Msa0602110:intron | 25.0% |
| ! | TTAAAAATAAGGACCAAAAG+TGG | + | chr4_2:45358766-45358785 | Msa0602110:intron | 25.0% |
| ! | TTAAAGGGACTAAAAATTGA+AGG | + | chr4_2:45358801-45358820 | Msa0602110:intron | 25.0% |
| ! | ATATTTGGATGATATGACAA+AGG | + | chr4_2:45359045-45359064 | Msa0602110:intron | 25.0% |
| !! | CTCAAAATCTTTGTTTAAGT+TGG | - | chr4_2:45359078-45359097 | None:intergenic | 25.0% |
| !!! | CTTAAACAAAGATTTTGAGT+TGG | + | chr4_2:45359079-45359098 | Msa0602110:intron | 25.0% |
| ! | ACTTGCATTATTCTTATGAT+TGG | - | chr4_2:45359108-45359127 | None:intergenic | 25.0% |
| !!! | TTACCTTTTTTTAAGAGAAG+AGG | + | chr4_2:45359272-45359291 | Msa0602110:intron | 25.0% |
| ! | TTTCCTCTTCTCTTAAAAAA+AGG | - | chr4_2:45359278-45359297 | None:intergenic | 25.0% |
| !! | ATTTTATATGCAGACATCAA+TGG | + | chr4_2:45359426-45359445 | Msa0602110:intron | 25.0% |
| !!! | TATTTTGAGCTGAAAATAGA+TGG | + | chr4_2:45359468-45359487 | Msa0602110:intron | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | + | chr4_2:45359750-45359769 | Msa0602110:intron | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | - | chr4_2:45359777-45359796 | None:intergenic | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | - | chr4_2:45359778-45359797 | None:intergenic | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | + | chr4_2:45359750-45359769 | Msa0602110:intron | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | - | chr4_2:45359777-45359796 | None:intergenic | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | - | chr4_2:45359778-45359797 | None:intergenic | 25.0% |
| ! | GTAATAAAATGTGTAGTACT+TGG | + | chr4_2:45359832-45359851 | Msa0602110:intron | 25.0% |
| !!! | CTATTACTCATTTTTACAAG+TGG | - | chr4_2:45359860-45359879 | None:intergenic | 25.0% |
| ! | ATATCATTTATCTGAAAAGG+AGG | - | chr4_2:45360137-45360156 | None:intergenic | 25.0% |
| !! | TTAAGGTGTTACATCAATTA+AGG | - | chr4_2:45360167-45360186 | None:intergenic | 25.0% |
| !!! | AGATTGAGTTCTAATCATTT+TGG | - | chr4_2:45360391-45360410 | None:intergenic | 25.0% |
| !! | ATACATAGTCTGAAATAACA+TGG | - | chr4_2:45360827-45360846 | None:intergenic | 25.0% |
| ! | ATAAATAGCAAGACGTTTAT+CGG | - | chr4_2:45361000-45361019 | None:intergenic | 25.0% |
| !! | ATCTGATGATGTATCTTTAT+CGG | - | chr4_2:45361135-45361154 | None:intergenic | 25.0% |
| !!! | GGTGTTTTTTTTGGAGATTT+TGG | - | chr4_2:45357194-45357213 | None:intergenic | 30.0% |
| !!! | TTTCTGTTGTTTTTAGGAGA+CGG | - | chr4_2:45357352-45357371 | None:intergenic | 30.0% |
| CATTACTTTATCATGAGCTT+AGG | - | chr4_2:45358416-45358435 | None:intergenic | 30.0% | |
| CTAAGCTCATGATAAAGTAA+TGG | + | chr4_2:45358414-45358433 | Msa0602110:intron | 30.0% | |
| ! | AATGCTTTGATGATACATGT+GGG | - | chr4_2:45358521-45358540 | None:intergenic | 30.0% |
| AGATCTTAAACAACTATGCA+TGG | + | chr4_2:45358548-45358567 | Msa0602110:intron | 30.0% | |
| TTAAACAACTATGCATGGTA+TGG | + | chr4_2:45358553-45358572 | Msa0602110:intron | 30.0% | |
| GAAGGACTTAAATGAAAAGT+TGG | + | chr4_2:45358833-45358852 | Msa0602110:intron | 30.0% | |
| AAAAAAGAGCAGATTATGGT+CGG | + | chr4_2:45359137-45359156 | Msa0602110:intron | 30.0% | |
| ! | CTATTTTCAGCTCAAAATAG+TGG | - | chr4_2:45359467-45359486 | None:intergenic | 30.0% |
| ACACATCCATTCATCTAATT+TGG | + | chr4_2:45359565-45359584 | Msa0602110:intron | 30.0% | |
| AAGGAACCAAATTAGATGAA+TGG | - | chr4_2:45359574-45359593 | None:intergenic | 30.0% | |
| TTTATCTGAAAAGGAGGTTA+TGG | - | chr4_2:45360131-45360150 | None:intergenic | 30.0% | |
| TGGTATCTAGCATGAAATTA+AGG | - | chr4_2:45360184-45360203 | None:intergenic | 30.0% | |
| GAATATGACATTTAGGTGAA+AGG | - | chr4_2:45360249-45360268 | None:intergenic | 30.0% | |
| ! | TAAGGATTAGGCTTTTATAG+AGG | - | chr4_2:45360278-45360297 | None:intergenic | 30.0% |
| !! | CATTGATAATGCTAAGGATT+AGG | - | chr4_2:45360290-45360309 | None:intergenic | 30.0% |
| !! | TTGATGCATTGATAATGCTA+AGG | - | chr4_2:45360296-45360315 | None:intergenic | 30.0% |
| TGATATTGAAGTTGTGAAGA+TGG | - | chr4_2:45360344-45360363 | None:intergenic | 30.0% | |
| TGATAGTTGAGATAAACTAG+TGG | - | chr4_2:45360463-45360482 | None:intergenic | 30.0% | |
| !! | CGTCTTGCTATTTATAAAGT+TGG | + | chr4_2:45361005-45361024 | Msa0602110:CDS | 30.0% |
| ! | TCTGATGATGTATCTTTATC+GGG | - | chr4_2:45361134-45361153 | None:intergenic | 30.0% |
| ! | AATGTGGGGACTAATGATTT+TGG | - | chr4_2:45357245-45357264 | None:intergenic | 35.0% |
| CATCACAACAATCCTCAAAA+AGG | + | chr4_2:45357304-45357323 | Msa0602110:CDS | 35.0% | |
| ! | AGAATGTTTTCGCCTTTTTG+AGG | - | chr4_2:45357319-45357338 | None:intergenic | 35.0% |
| !!! | TTGTTTTTAGGAGACGGATT+AGG | - | chr4_2:45357346-45357365 | None:intergenic | 35.0% |
| ! | TGTTTTCGTCTAAGGAGTTA+AGG | - | chr4_2:45357475-45357494 | None:intergenic | 35.0% |
| CTACATATTGAGGTAAGATG+TGG | - | chr4_2:45357520-45357539 | None:intergenic | 35.0% | |
| TACCAGCTATTGTTTGAACA+GGG | - | chr4_2:45357571-45357590 | None:intergenic | 35.0% | |
| TTACCAGCTATTGTTTGAAC+AGG | - | chr4_2:45357572-45357591 | None:intergenic | 35.0% | |
| CCTGATGCATAAACATTAAG+TGG | - | chr4_2:45357611-45357630 | None:intergenic | 35.0% | |
| CCACTTAATGTTTATGCATC+AGG | + | chr4_2:45357608-45357627 | Msa0602110:intron | 35.0% | |
| AACAATGTCAGTCTTTCAAC+CGG | + | chr4_2:45357632-45357651 | Msa0602110:CDS | 35.0% | |
| TTCTCCTTATTAGCAGCTTT+AGG | - | chr4_2:45357803-45357822 | None:intergenic | 35.0% | |
| TGATCAAGACCAAAATGATC+AGG | + | chr4_2:45357835-45357854 | Msa0602110:CDS | 35.0% | |
| ! | TACCTTGATCCTGATCATTT+TGG | - | chr4_2:45357847-45357866 | None:intergenic | 35.0% |
| !! | TTGTTGCTGTAGCATTGATA+TGG | + | chr4_2:45357918-45357937 | Msa0602110:intron | 35.0% |
| ATTGATATGGAGTTGACGAA+TGG | + | chr4_2:45357931-45357950 | Msa0602110:intron | 35.0% | |
| AAAGCAACAAAAAAGTGGCA+TGG | - | chr4_2:45358001-45358020 | None:intergenic | 35.0% | |
| ATGATACATGTGGGTCTATT+TGG | - | chr4_2:45358512-45358531 | None:intergenic | 35.0% | |
| ! | CAATGCTTTGATGATACATG+TGG | - | chr4_2:45358522-45358541 | None:intergenic | 35.0% |
| !! | ATGCGAGTTCTAAAGAAAAG+AGG | + | chr4_2:45358957-45358976 | Msa0602110:intron | 35.0% |
| !! | CTAAAGAAAAGAGGTATCCA+TGG | + | chr4_2:45358966-45358985 | Msa0602110:intron | 35.0% |
| !! | TCAGCTCAAAATAGTGGATT+TGG | - | chr4_2:45359461-45359480 | None:intergenic | 35.0% |
| ! | ATTTTTCTTCCTCCAATGGA+GGG | - | chr4_2:45359651-45359670 | None:intergenic | 35.0% |
| ! | AATTTTTCTTCCTCCAATGG+AGG | - | chr4_2:45359652-45359671 | None:intergenic | 35.0% |
| ! | CTCAATTTTTCTTCCTCCAA+TGG | - | chr4_2:45359655-45359674 | None:intergenic | 35.0% |
| CCAATGGCAATACACTAATA+AGG | - | chr4_2:45359946-45359965 | None:intergenic | 35.0% | |
| CCTTATTAGTGTATTGCCAT+TGG | + | chr4_2:45359943-45359962 | Msa0602110:intron | 35.0% | |
| AAATAAGTGATGTGTCACGT+AGG | + | chr4_2:45360007-45360026 | Msa0602110:intron | 35.0% | |
| AATAAGTGATGTGTCACGTA+GGG | + | chr4_2:45360008-45360027 | Msa0602110:intron | 35.0% | |
| CTTAACAAGGACTCCTTAAA+TGG | - | chr4_2:45360035-45360054 | None:intergenic | 35.0% | |
| CATTTAAGGAGTCCTTGTTA+AGG | + | chr4_2:45360033-45360052 | Msa0602110:intron | 35.0% | |
| ACAATGGTAGTTCCTTAACA+AGG | - | chr4_2:45360048-45360067 | None:intergenic | 35.0% | |
| TTGTTAAGGAACTACCATTG+TGG | + | chr4_2:45360047-45360066 | Msa0602110:intron | 35.0% | |
| !! | TTAGGTGAAAGGCTTTGTTA+TGG | - | chr4_2:45360238-45360257 | None:intergenic | 35.0% |
| GCTTGGAGAATATGACATTT+AGG | - | chr4_2:45360256-45360275 | None:intergenic | 35.0% | |
| ! | ATTAGGCTTTTATAGAGGCT+TGG | - | chr4_2:45360273-45360292 | None:intergenic | 35.0% |
| ATTGAAGTTGTGAAGATGGT+AGG | - | chr4_2:45360340-45360359 | None:intergenic | 35.0% | |
| TAGTTGAGATAAACTAGTGG+TGG | - | chr4_2:45360460-45360479 | None:intergenic | 35.0% | |
| CCAATAGCTGTGAATTAAGT+TGG | - | chr4_2:45360689-45360708 | None:intergenic | 35.0% | |
| CCAACTTAATTCACAGCTAT+TGG | + | chr4_2:45360686-45360705 | Msa0602110:CDS | 35.0% | |
| TGGATTAACAATTCTTGCAC+CGG | + | chr4_2:45360722-45360741 | Msa0602110:CDS | 35.0% | |
| GAACTGAATGTTGTGAGTTA+CGG | + | chr4_2:45360915-45360934 | Msa0602110:CDS | 35.0% | |
| GATGTATCTTTATCGGGTTT+AGG | - | chr4_2:45361128-45361147 | None:intergenic | 35.0% | |
| AATCCAACTGAAAACAAGTC+TGG | + | chr4_2:45361170-45361189 | Msa0602110:CDS | 35.0% | |
| TCAAGATTGTGTATGGAAAG+TGG | + | chr4_2:45361198-45361217 | Msa0602110:CDS | 35.0% | |
| TGCTTGTGAAAGGGATAATG+TGG | - | chr4_2:45357159-45357178 | None:intergenic | 40.0% | |
| TGATTCAGGTGCTTGTGAAA+GGG | - | chr4_2:45357168-45357187 | None:intergenic | 40.0% | |
| ATGATTCAGGTGCTTGTGAA+AGG | - | chr4_2:45357169-45357188 | None:intergenic | 40.0% | |
| !! | GGGACTAATGATTTTGGTGA+TGG | - | chr4_2:45357239-45357258 | None:intergenic | 40.0% |
| TCTGGTGATTCAGGTAATGT+GGG | - | chr4_2:45357260-45357279 | None:intergenic | 40.0% | |
| !!! | TTTTAGGAGACGGATTAGGA+CGG | - | chr4_2:45357342-45357361 | None:intergenic | 40.0% |
| CTTGAAAATGCTGAATCGTC+TGG | - | chr4_2:45357437-45357456 | None:intergenic | 40.0% | |
| !! | CATTTTCAAGCCTCAAAGCA+GGG | + | chr4_2:45357447-45357466 | Msa0602110:CDS | 40.0% |
| TTTGAGCTCGCTACATATTG+AGG | - | chr4_2:45357530-45357549 | None:intergenic | 40.0% | |
| AACCCTGTTCAAACAATAGC+TGG | + | chr4_2:45357566-45357585 | Msa0602110:CDS | 40.0% | |
| TAGCTGGTAAAGATCCAACA+AGG | + | chr4_2:45357582-45357601 | Msa0602110:intron | 40.0% | |
| ! | ACATTAAGTGGAAGCCTTGT+TGG | - | chr4_2:45357599-45357618 | None:intergenic | 40.0% |
| ACAATGTCAGTCTTTCAACC+GGG | + | chr4_2:45357633-45357652 | Msa0602110:CDS | 40.0% | |
| CAAGCTCGCGATTTATCATT+TGG | + | chr4_2:45357697-45357716 | Msa0602110:CDS | 40.0% | |
| TTAGTAGCGAAGAAATCACG+AGG | - | chr4_2:45357737-45357756 | None:intergenic | 40.0% | |
| TCGTGATTTCTTCGCTACTA+AGG | + | chr4_2:45357736-45357755 | Msa0602110:CDS | 40.0% | |
| GACCAAAATGATCAGGATCA+AGG | + | chr4_2:45357842-45357861 | Msa0602110:CDS | 40.0% | |
| GATCAGGATCAAGGTAAATC+TGG | + | chr4_2:45357851-45357870 | Msa0602110:intron | 40.0% | |
| GTGAGATTGTGTGGAATTCT+TGG | + | chr4_2:45357878-45357897 | Msa0602110:intron | 40.0% | |
| GTTGACGAATGGTTTCCATT+TGG | + | chr4_2:45357942-45357961 | Msa0602110:intron | 40.0% | |
| !! | TGCAATGTGTTGCTTTCAGT+TGG | - | chr4_2:45359508-45359527 | None:intergenic | 40.0% |
| ! | TTCCTTAGAGCATCTCCAAT+GGG | + | chr4_2:45359588-45359607 | Msa0602110:intron | 40.0% |
| GAAAAATTGAGTCCCCGTTA+AGG | + | chr4_2:45359664-45359683 | Msa0602110:intron | 40.0% | |
| TATAGTTCCCCGTTCCTTAA+CGG | - | chr4_2:45359681-45359700 | None:intergenic | 40.0% | |
| AAGGAACGGGGAACTATATA+AGG | + | chr4_2:45359683-45359702 | Msa0602110:intron | 40.0% | |
| TAAGGACTCAATGACTCCAA+TGG | - | chr4_2:45359962-45359981 | None:intergenic | 40.0% | |
| !! | AGTTGTAAGAGCATCCACAA+TGG | - | chr4_2:45360064-45360083 | None:intergenic | 40.0% |
| TCTGAAAAGGAGGTTATGGT+GGG | - | chr4_2:45360127-45360146 | None:intergenic | 40.0% | |
| ATCTGAAAAGGAGGTTATGG+TGG | - | chr4_2:45360128-45360147 | None:intergenic | 40.0% | |
| !! | AAGGAAGGTACCAATGGTTT+AGG | - | chr4_2:45360543-45360562 | None:intergenic | 40.0% |
| CAGCTATTGGCAACAAAAAC+AGG | + | chr4_2:45360699-45360718 | Msa0602110:CDS | 40.0% | |
| CTATTGGCAACAAAAACAGG+TGG | + | chr4_2:45360702-45360721 | Msa0602110:CDS | 40.0% | |
| TTCCTTAACTCTCTTTCCGA+TGG | + | chr4_2:45360777-45360796 | Msa0602110:CDS | 40.0% | |
| AACATTCAGTTCCACCTTTC+CGG | - | chr4_2:45360907-45360926 | None:intergenic | 40.0% | |
| GAAGTGTGAACATATCGACA+GGG | + | chr4_2:45360940-45360959 | Msa0602110:CDS | 40.0% | |
| AAGTGTGAACATATCGACAG+GGG | + | chr4_2:45360941-45360960 | Msa0602110:CDS | 40.0% | |
| GAAGTGAACACGACAATCAA+TGG | + | chr4_2:45360963-45360982 | Msa0602110:CDS | 40.0% | |
| GCAACGGAAAAGAAATCCAT+AGG | - | chr4_2:45361044-45361063 | None:intergenic | 40.0% | |
| ! | GGATTTCTTTTCCGTTGCTA+AGG | + | chr4_2:45361046-45361065 | Msa0602110:CDS | 40.0% |
| GGCTCTATCAAGATTGTGTA+TGG | + | chr4_2:45361191-45361210 | Msa0602110:CDS | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | + | chr4_2:45361209-45361228 | Msa0602110:CDS | 40.0% | |
| !! | GGAGATTTTGGGGATGATTC+AGG | - | chr4_2:45357182-45357201 | None:intergenic | 45.0% |
| !!! | TGATGGTGCTGTTGCTTTTG+GGG | - | chr4_2:45357222-45357241 | None:intergenic | 45.0% |
| !!! | GTGATGGTGCTGTTGCTTTT+GGG | - | chr4_2:45357223-45357242 | None:intergenic | 45.0% |
| CTGGTGATTCAGGTAATGTG+GGG | - | chr4_2:45357259-45357278 | None:intergenic | 45.0% | |
| GTCTGGTGATTCAGGTAATG+TGG | - | chr4_2:45357261-45357280 | None:intergenic | 45.0% | |
| TCTGTTGAGTCTGGTGATTC+AGG | - | chr4_2:45357269-45357288 | None:intergenic | 45.0% | |
| GGATTGTTGTGATGTCGTCA+GGG | - | chr4_2:45357298-45357317 | None:intergenic | 45.0% | |
| AGGATTGTTGTGATGTCGTC+AGG | - | chr4_2:45357299-45357318 | None:intergenic | 45.0% | |
| CAGCTCATCACAGCCAAAAA+CGG | + | chr4_2:45357392-45357411 | Msa0602110:CDS | 45.0% | |
| !! | GATTGTTAAGCCGCCGTTTT+TGG | - | chr4_2:45357408-45357427 | None:intergenic | 45.0% |
| !! | GCATTTTCAAGCCTCAAAGC+AGG | + | chr4_2:45357446-45357465 | Msa0602110:CDS | 45.0% |
| AGTTAAGGAACCCTGCTTTG+AGG | - | chr4_2:45357460-45357479 | None:intergenic | 45.0% | |
| CAATGTCAGTCTTTCAACCG+GGG | + | chr4_2:45357634-45357653 | Msa0602110:CDS | 45.0% | |
| GTTGTTACTGCTTCCGTTGT+GGG | + | chr4_2:45357656-45357675 | Msa0602110:CDS | 45.0% | |
| AGTGTACACAACACCCACAA+CGG | - | chr4_2:45357672-45357691 | None:intergenic | 45.0% | |
| GGCTCCTAAAGCTGCTAATA+AGG | + | chr4_2:45357796-45357815 | Msa0602110:CDS | 45.0% | |
| TCGAGATGCGTTGAATACCA+TGG | - | chr4_2:45358986-45359005 | None:intergenic | 45.0% | |
| ! | GTTCCTTAGAGCATCTCCAA+TGG | + | chr4_2:45359587-45359606 | Msa0602110:intron | 45.0% |
| ! | TCCTTAGAGCATCTCCAATG+GGG | + | chr4_2:45359589-45359608 | Msa0602110:intron | 45.0% |
| GTTAAGTAAGGACTCCCCAT+TGG | - | chr4_2:45359606-45359625 | None:intergenic | 45.0% | |
| TGGGGAGTCCTTACTTAACA+AGG | + | chr4_2:45359607-45359626 | Msa0602110:intron | 45.0% | |
| GGAGTGGTCCTTGTTAAGTA+AGG | - | chr4_2:45359618-45359637 | None:intergenic | 45.0% | |
| ATTGAGTCCCCGTTAAGGAA+CGG | + | chr4_2:45359669-45359688 | Msa0602110:intron | 45.0% | |
| ATAGTTCCCCGTTCCTTAAC+GGG | - | chr4_2:45359680-45359699 | None:intergenic | 45.0% | |
| TTAGTTACCCAGGAGAGAGA+GGG | - | chr4_2:45359710-45359729 | None:intergenic | 45.0% | |
| TCTCTCTCCTGGGTAACTAA+CGG | + | chr4_2:45359710-45359729 | Msa0602110:intron | 45.0% | |
| TGTCACGTAGGGTCCATTTA+AGG | + | chr4_2:45360019-45360038 | Msa0602110:intron | 45.0% | |
| CTGAAAAGGAGGTTATGGTG+GGG | - | chr4_2:45360126-45360145 | None:intergenic | 45.0% | |
| ! | GCTGGTAGTGTAGGTTGTAT+AGG | - | chr4_2:45360498-45360517 | None:intergenic | 45.0% |
| !! | TCTGGTAAGGAAGGTACCAA+TGG | - | chr4_2:45360549-45360568 | None:intergenic | 45.0% |
| ATCACTAGGTGACTCTGGTA+AGG | - | chr4_2:45360562-45360581 | None:intergenic | 45.0% | |
| GTCCATCGGAAAGAGAGTTA+AGG | - | chr4_2:45360782-45360801 | None:intergenic | 45.0% | |
| ! | CAACTCGAGCTTTTGTCCAT+CGG | - | chr4_2:45360796-45360815 | None:intergenic | 45.0% |
| ACATTCAGTTCCACCTTTCC+GGG | - | chr4_2:45360906-45360925 | None:intergenic | 45.0% | |
| CTGAATGTTGTGAGTTACGG+AGG | + | chr4_2:45360918-45360937 | Msa0602110:CDS | 45.0% | |
| ! | GGAAGTGTGAACATATCGAC+AGG | + | chr4_2:45360939-45360958 | Msa0602110:CDS | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | + | chr4_2:45361025-45361044 | Msa0602110:CDS | 45.0% |
| TACATCATCAGATTCGTCGC+AGG | + | chr4_2:45361142-45361161 | Msa0602110:CDS | 45.0% | |
| !! | GAGCCAGACTTGTTTTCAGT+TGG | - | chr4_2:45361176-45361195 | None:intergenic | 45.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr4_2:45358629-45358648 | Msa0602110:intron | 5.0% |
| !!! | ATAATATACTTTTAATAAAA+TGG | - | chr4_2:45358939-45358958 | None:intergenic | 5.0% |
| !!! | GGGGTAGGGGGTGTTTTTTT+TGG | - | chr4_2:45357203-45357222 | None:intergenic | 50.0% |
| !!! | TGCTGTTGCTTTTGGGGTAG+GGG | - | chr4_2:45357216-45357235 | None:intergenic | 50.0% |
| !!! | GTGCTGTTGCTTTTGGGGTA+GGG | - | chr4_2:45357217-45357236 | None:intergenic | 50.0% |
| !!! | GGTGATGGTGCTGTTGCTTT+TGG | - | chr4_2:45357224-45357243 | None:intergenic | 50.0% |
| TGTTGTGATGTCGTCAGGGA+CGG | - | chr4_2:45357294-45357313 | None:intergenic | 50.0% | |
| CTCATCACAGCCAAAAACGG+CGG | + | chr4_2:45357395-45357414 | Msa0602110:CDS | 50.0% | |
| AACGGAAGCAGTAACAACCC+CGG | - | chr4_2:45357654-45357673 | None:intergenic | 50.0% | |
| GGTTGTTACTGCTTCCGTTG+TGG | + | chr4_2:45357655-45357674 | Msa0602110:CDS | 50.0% | |
| TTAGCAGCAGCAGTACGAGT+TGG | - | chr4_2:45357776-45357795 | None:intergenic | 50.0% | |
| AACTCGTACTGCTGCTGCTA+AGG | + | chr4_2:45357775-45357794 | Msa0602110:CDS | 50.0% | |
| ! | TCTGGAGCAGTGAGATTGTG+TGG | + | chr4_2:45357869-45357888 | Msa0602110:intron | 50.0% |
| TCCCCATTGGAGATGCTCTA+AGG | - | chr4_2:45359593-45359612 | None:intergenic | 50.0% | |
| TCCAATGGAGGGTCCTTAAC+GGG | - | chr4_2:45359640-45359659 | None:intergenic | 50.0% | |
| CTCCAATGGAGGGTCCTTAA+CGG | - | chr4_2:45359641-45359660 | None:intergenic | 50.0% | |
| TTGAGTCCCCGTTAAGGAAC+GGG | + | chr4_2:45359670-45359689 | Msa0602110:intron | 50.0% | |
| TAGTTCCCCGTTCCTTAACG+GGG | - | chr4_2:45359679-45359698 | None:intergenic | 50.0% | |
| TATAAGGACCCTCTCTCTCC+TGG | + | chr4_2:45359699-45359718 | Msa0602110:intron | 50.0% | |
| ATAAGGACCCTCTCTCTCCT+GGG | + | chr4_2:45359700-45359719 | Msa0602110:intron | 50.0% | |
| GTTAGTTACCCAGGAGAGAG+AGG | - | chr4_2:45359711-45359730 | None:intergenic | 50.0% | |
| CTCTCTCCTGGGTAACTAAC+GGG | + | chr4_2:45359711-45359730 | Msa0602110:intron | 50.0% | |
| GGTTGTATAGGAGCAGTAGC+AGG | - | chr4_2:45360486-45360505 | None:intergenic | 50.0% | |
| AATGGTTTAGGAGCTGCAGC+TGG | - | chr4_2:45360531-45360550 | None:intergenic | 50.0% | |
| AGCTGCAGCTCCTAAACCAT+TGG | + | chr4_2:45360530-45360549 | Msa0602110:CDS | 50.0% | |
| CTAGGTGACTCTGGTAAGGA+AGG | - | chr4_2:45360558-45360577 | None:intergenic | 50.0% | |
| GTGGAATCACTAGGTGACTC+TGG | - | chr4_2:45360567-45360586 | None:intergenic | 50.0% | |
| CATCGTCGGAATCCTGAGAA+AGG | + | chr4_2:45360611-45360630 | Msa0602110:CDS | 50.0% | |
| TGTATGCCTTCGCCTTTCTC+AGG | - | chr4_2:45360626-45360645 | None:intergenic | 50.0% | |
| ! | TCCTGCTTTGAGTCCTGCAA+AGG | - | chr4_2:45360757-45360776 | None:intergenic | 50.0% |
| AGCAAGTGTTCTCACAGGGT+TGG | - | chr4_2:45360874-45360893 | None:intergenic | 50.0% | |
| AACCCTGTGAGAACACTTGC+TGG | + | chr4_2:45360873-45360892 | Msa0602110:CDS | 50.0% | |
| CTCCAGCAAGTGTTCTCACA+GGG | - | chr4_2:45360878-45360897 | None:intergenic | 50.0% | |
| ! | ACACTTGCTGGAGCTAAACC+CGG | + | chr4_2:45360885-45360904 | Msa0602110:CDS | 50.0% |
| ! | CTTTTCCGTTGCTAAGGCAC+CGG | + | chr4_2:45361052-45361071 | Msa0602110:CDS | 50.0% |
| !! | TTTTCCGTTGCTAAGGCACC+GGG | + | chr4_2:45361053-45361072 | Msa0602110:CDS | 50.0% |
| ACCTTCAACCGACACAGCAA+AGG | + | chr4_2:45361100-45361119 | Msa0602110:CDS | 50.0% | |
| ! | TTTAGGCGCCTTTGCTGTGT+CGG | - | chr4_2:45361111-45361130 | None:intergenic | 50.0% |
| !!! | GCTGTTGCTTTTGGGGTAGG+GGG | - | chr4_2:45357215-45357234 | None:intergenic | 55.0% |
| !!! | GGTGCTGTTGCTTTTGGGGT+AGG | - | chr4_2:45357218-45357237 | None:intergenic | 55.0% |
| ! | CGCTACTAAGGCACCTGCTT+TGG | + | chr4_2:45357748-45357767 | Msa0602110:CDS | 55.0% |
| ! | GTACGAGTTGGAGCCAAAGC+AGG | - | chr4_2:45357764-45357783 | None:intergenic | 55.0% |
| ACAAGGACCACTCCCCGTTA+AGG | + | chr4_2:45359624-45359643 | Msa0602110:intron | 55.0% | |
| CCAATGGAGGGTCCTTAACG+GGG | - | chr4_2:45359639-45359658 | None:intergenic | 55.0% | |
| CGTTAAGGACCCTCCATTGG+AGG | + | chr4_2:45359639-45359658 | Msa0602110:intron | 55.0% | |
| TGAGTCCCCGTTAAGGAACG+GGG | + | chr4_2:45359671-45359690 | Msa0602110:intron | 55.0% | |
| ! | GTGGTTGGAGCTGGTAGTGT+AGG | - | chr4_2:45360507-45360526 | None:intergenic | 55.0% |
| TTTAGGAGCTGCAGCTGGTG+TGG | - | chr4_2:45360526-45360545 | None:intergenic | 55.0% | |
| GTGTCAGGGGTGGAATCACT+AGG | - | chr4_2:45360576-45360595 | None:intergenic | 55.0% | |
| AACAGTGCCTGCTGTGTCAG+GGG | - | chr4_2:45360589-45360608 | None:intergenic | 55.0% | |
| CAACAGTGCCTGCTGTGTCA+GGG | - | chr4_2:45360590-45360609 | None:intergenic | 55.0% | |
| TCAACAGTGCCTGCTGTGTC+AGG | - | chr4_2:45360591-45360610 | None:intergenic | 55.0% | |
| ! | GCAGGCACTGTTGACATCGT+CGG | + | chr4_2:45360597-45360616 | Msa0602110:CDS | 55.0% |
| CGGAATCCTGAGAAAGGCGA+AGG | + | chr4_2:45360617-45360636 | Msa0602110:CDS | 55.0% | |
| GCCTTTGCAGGACTCAAAGC+AGG | + | chr4_2:45360753-45360772 | Msa0602110:CDS | 55.0% | |
| GCTCCAGCAAGTGTTCTCAC+AGG | - | chr4_2:45360879-45360898 | None:intergenic | 55.0% | |
| TGCTGGAGCTAAACCCGGAA+AGG | + | chr4_2:45360890-45360909 | Msa0602110:CDS | 55.0% | |
| TGGAGCTAAACCCGGAAAGG+TGG | + | chr4_2:45360893-45360912 | Msa0602110:CDS | 55.0% | |
| !! | TTTCCGTTGCTAAGGCACCG+GGG | + | chr4_2:45361054-45361073 | Msa0602110:CDS | 55.0% |
| ! | GAAGGTTCTGGCGCCAAAGA+TGG | - | chr4_2:45361086-45361105 | None:intergenic | 55.0% |
| !! | GCTGTGTCGGTTGAAGGTTC+TGG | - | chr4_2:45361098-45361117 | None:intergenic | 55.0% |
| !! | GCCTTTGCTGTGTCGGTTGA+AGG | - | chr4_2:45361104-45361123 | None:intergenic | 55.0% |
| GGGACGGAGTCTGTTGAGTC+TGG | - | chr4_2:45357278-45357297 | None:intergenic | 60.0% | |
| ATGCTGAATCGTCTGGCGCG+AGG | - | chr4_2:45357430-45357449 | None:intergenic | 60.0% | |
| CCCCGTTAAGGACCCTCCAT+TGG | + | chr4_2:45359636-45359655 | Msa0602110:intron | 60.0% | |
| GTGGGACCCGTTAGTTACCC+AGG | - | chr4_2:45359720-45359739 | None:intergenic | 60.0% | |
| GATTCCACCCCTGACACAGC+AGG | + | chr4_2:45360579-45360598 | Msa0602110:CDS | 60.0% | |
| !! | CCTGCAAAGGCGCTGTCATC+CGG | - | chr4_2:45360744-45360763 | None:intergenic | 60.0% |
| CTTCCCCGGTGCCTTAGCAA+CGG | - | chr4_2:45361060-45361079 | None:intergenic | 60.0% | |
| !! | ACCGGGGAAGGCACCATCTT+TGG | + | chr4_2:45361070-45361089 | Msa0602110:CDS | 60.0% |
| GCCAAAGATGGTGCCTTCCC+CGG | - | chr4_2:45361074-45361093 | None:intergenic | 60.0% | |
| GGAGGGTCCTTAACGGGGAG+TGG | - | chr4_2:45359634-45359653 | None:intergenic | 65.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | - | chr4_2:45360516-45360535 | None:intergenic | 65.0% | |
| GGAGCTGCAGCTGGTGTGGT+TGG | - | chr4_2:45360522-45360541 | None:intergenic | 65.0% | |
| AGTGCCTGCTGTGTCAGGGG+TGG | - | chr4_2:45360586-45360605 | None:intergenic | 65.0% | |
| CCGGATGACAGCGCCTTTGC+AGG | + | chr4_2:45360741-45360760 | Msa0602110:CDS | 65.0% | |
| !! | CGTTGCTAAGGCACCGGGGA+AGG | + | chr4_2:45361058-45361077 | Msa0602110:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 45357104 | 45361268 | 45357104 | ID=Msa0602110;Name=Msa0602110 |
| chr4_2 | mRNA | 45357104 | 45361268 | 45357104 | ID=Msa0602110-mRNA-1;Parent=Msa0602110;Name=Msa0602110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|4|0|509 |
| chr4_2 | exon | 45357104 | 45357350 | 45357104 | ID=Msa0602110-mRNA-1:exon:10179;Parent=Msa0602110-mRNA-1 |
| chr4_2 | exon | 45357369 | 45357587 | 45357369 | ID=Msa0602110-mRNA-1:exon:10180;Parent=Msa0602110-mRNA-1 |
| chr4_2 | exon | 45357630 | 45357863 | 45357630 | ID=Msa0602110-mRNA-1:exon:10181;Parent=Msa0602110-mRNA-1 |
| chr4_2 | exon | 45360439 | 45361268 | 45360439 | ID=Msa0602110-mRNA-1:exon:10182;Parent=Msa0602110-mRNA-1 |
| chr4_2 | CDS | 45357104 | 45357350 | 45357104 | ID=Msa0602110-mRNA-1:cds;Parent=Msa0602110-mRNA-1 |
| chr4_2 | CDS | 45357369 | 45357587 | 45357369 | ID=Msa0602110-mRNA-1:cds;Parent=Msa0602110-mRNA-1 |
| chr4_2 | CDS | 45357630 | 45357863 | 45357630 | ID=Msa0602110-mRNA-1:cds;Parent=Msa0602110-mRNA-1 |
| chr4_2 | CDS | 45360439 | 45361268 | 45360439 | ID=Msa0602110-mRNA-1:cds;Parent=Msa0602110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
