AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142380 MtrunA17_Chr4g0076751 97.222 360 10 0 1 360 14 373 0.0 733
Msa0142380 MtrunA17_Chr8g0386331 79.532 342 70 0 12 353 6 347 0.0 590
Msa0142380 MtrunA17_Chr5g0396581 67.055 343 111 2 10 352 45 385 6.78e-173 486
Msa0142380 MtrunA17_Chr8g0388261 67.155 341 110 2 12 352 4 342 6.13e-171 479
Msa0142380 MtrunA17_Chr5g0396571 65.689 341 115 2 12 352 4 342 1.43e-168 474
Msa0142380 MtrunA17_Chr2g0293521 41.311 351 180 10 14 352 73 409 1.92e-82 256
Msa0142380 MtrunA17_Chr8g0380921 39.889 361 191 10 6 354 65 411 5.48e-79 248
Msa0142380 MtrunA17_Chr1g0147841 25.212 353 223 13 10 351 3 325 1.18e-19 90.5
Msa0142380 MtrunA17_Chr2g0314601 24.786 351 223 14 12 351 7 327 3.36e-19 89.0
Msa0142380 MtrunA17_Chr8g0359401 23.714 350 228 13 12 351 7 327 1.71e-17 84.0
Msa0142380 MtrunA17_Chr4g0067461 27.596 337 194 13 7 336 106 399 1.99e-16 80.1
Msa0142380 MtrunA17_Chr4g0056941 25.000 360 228 9 3 344 84 419 2.39e-16 80.1
Msa0142380 MtrunA17_Chr5g0398811 24.789 355 237 11 3 344 79 416 2.32e-15 77.0
Msa0142380 MtrunA17_Chr4g0073351 24.928 345 227 10 13 344 96 421 3.21e-15 76.6
Msa0142380 MtrunA17_Chr1g0195521 27.811 338 199 14 14 336 120 427 6.79e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142380 AT1G12780.1 78.510 349 75 0 8 356 3 351 0.0 590
Msa0142380 AT1G63180.1 76.301 346 82 0 8 353 3 348 0.0 578
Msa0142380 AT4G10960.1 66.959 342 111 2 12 353 4 343 9.83e-175 489
Msa0142380 AT4G23920.1 67.160 338 109 2 12 349 3 338 7.40e-171 480
Msa0142380 AT1G64440.1 66.372 339 112 2 14 352 5 341 5.33e-170 478
Msa0142380 AT1G63180.2 75.258 291 72 0 8 298 3 293 2.12e-168 472
Msa0142380 AT5G44480.3 38.857 350 190 8 14 352 73 409 2.25e-78 246
Msa0142380 AT5G44480.4 38.857 350 190 8 14 352 73 409 2.25e-78 246
Msa0142380 AT5G44480.2 38.857 350 190 8 14 352 73 409 2.25e-78 246
Msa0142380 AT5G44480.1 38.857 350 190 8 14 352 97 433 1.25e-77 245
Msa0142380 AT4G20460.1 38.000 350 193 7 14 352 72 408 1.84e-76 241
Msa0142380 AT1G30620.3 38.352 352 193 8 14 354 72 410 2.00e-74 236
Msa0142380 AT1G30620.1 38.352 352 193 8 14 354 73 411 2.24e-74 236
Msa0142380 AT1G30620.6 38.352 352 193 8 14 354 73 411 2.24e-74 236
Msa0142380 AT1G30620.4 38.352 352 193 8 14 354 73 411 2.24e-74 236
Msa0142380 AT1G30620.2 38.352 352 193 8 14 354 73 411 2.24e-74 236
Msa0142380 AT2G34850.3 36.134 238 130 6 126 352 1 227 3.63e-42 147
Msa0142380 AT2G34850.1 36.134 238 130 6 126 352 1 227 3.63e-42 147
Msa0142380 AT2G34850.4 36.134 238 130 6 126 352 1 227 3.63e-42 147
Msa0142380 AT2G34850.2 36.134 238 130 6 126 352 1 227 3.63e-42 147
Msa0142380 AT1G30620.5 38.974 195 116 3 14 208 73 264 1.94e-41 147
Msa0142380 AT1G53500.1 24.571 350 225 13 12 351 9 329 5.46e-19 89.0
Msa0142380 AT3G14790.1 24.571 350 225 12 12 351 7 327 7.79e-19 88.6
Msa0142380 AT3G14790.2 24.571 350 225 12 12 351 10 330 9.47e-19 88.2
Msa0142380 AT3G62830.2 28.182 330 192 14 14 336 121 412 8.41e-18 84.7
Msa0142380 AT3G62830.1 28.182 330 192 14 14 336 121 412 8.41e-18 84.7
Msa0142380 AT3G53520.1 27.809 356 208 16 10 354 118 435 2.50e-17 83.2
Msa0142380 AT2G47650.1 27.576 330 194 15 14 336 123 414 3.33e-17 82.8
Msa0142380 AT1G78570.1 24.786 351 223 14 12 351 7 327 5.58e-17 82.8
Msa0142380 AT3G53520.2 27.528 356 207 16 10 354 118 433 1.14e-15 78.2
Msa0142380 AT2G47650.2 27.381 336 193 15 14 336 123 420 3.84e-15 76.6
Msa0142380 AT4G12250.1 25.364 343 228 10 13 344 97 422 1.29e-14 75.1
Msa0142380 AT4G30440.1 25.141 354 215 14 13 344 89 414 7.10e-14 72.8
Msa0142380 AT3G53520.4 27.473 364 182 20 10 336 118 436 9.93e-14 72.4
Msa0142380 AT3G53520.3 30.159 252 137 13 10 254 118 337 7.02e-11 63.5

Find 137 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATGACACTGAGAAATT+TGG 0.143359 1_4:+1269711 None:intergenic
TCATCCTCTGCAGCAGTTTA+TGG 0.176720 1_4:-1271107 Msa0142380:CDS
TTGCCCGAGCTCAACGTTTA+TGG 0.230700 1_4:-1270767 Msa0142380:CDS
CCAAATTTCTCAGTGTCATT+TGG 0.235050 1_4:-1269711 Msa0142380:three_prime_UTR
CAAATTTCTCAGTGTCATTT+GGG 0.245600 1_4:-1269710 Msa0142380:three_prime_UTR
TAAGTAAGGCATCAGATTAT+TGG 0.264960 1_4:+1270811 None:intergenic
CATAAGGATTCATGGCTTGC+AGG 0.302019 1_4:+1271048 None:intergenic
GCTGCATTTGAAAAGGCTTC+TGG 0.308975 1_4:-1270408 Msa0142380:CDS
AAGACCATGTGCCTAGAAAA+AGG 0.326070 1_4:-1269806 Msa0142380:three_prime_UTR
GGTTCTTCCATAAGGATTCA+TGG 0.337426 1_4:+1271040 None:intergenic
TACCAGCTTGAGCTTGGGTT+TGG 0.340617 1_4:-1270007 Msa0142380:CDS
AAGTAAGGCATCAGATTATT+GGG 0.352747 1_4:+1270812 None:intergenic
GGTCGTTCAGCTTCTAAAAC+AGG 0.355343 1_4:-1271435 Msa0142380:CDS
CTGCAAGCCATGAATCCTTA+TGG 0.360608 1_4:-1271047 Msa0142380:CDS
TGTCCACAGGGTTCGCCATT+TGG 0.362347 1_4:-1271363 Msa0142380:CDS
TATATCTTAAGATGGTAGTA+TGG 0.362827 1_4:+1269882 None:intergenic
CAAATGACACTGAGAAATTT+GGG 0.368433 1_4:+1269712 None:intergenic
ACCAGCTTGAGCTTGGGTTT+GGG 0.376831 1_4:-1270006 Msa0142380:CDS
TGTGCAGAGACCAATGGAAT+TGG 0.380858 1_4:-1270051 Msa0142380:CDS
GCAATCTTCCAACTGCTACT+TGG 0.382864 1_4:+1270786 None:intergenic
GCCGGAAAGGAAAACGATAA+TGG 0.383441 1_4:-1271492 Msa0142380:CDS
ACGGGTGGGGCGGGGTTCAT+TGG 0.384071 1_4:-1271467 Msa0142380:CDS
CAAGAGAATGAGAGGATAGT+AGG 0.395463 1_4:+1269923 None:intergenic
ACTCACCGCAGTGCCATCTT+TGG 0.403250 1_4:+1270730 None:intergenic
AGTACCTTGGTTCTTCCATA+AGG 0.405042 1_4:+1271032 None:intergenic
TGGGGATACCAGCTTGAGCT+TGG 0.405772 1_4:-1270013 Msa0142380:CDS
ATTGTAGAGATTGTCGATAA+TGG 0.413237 1_4:+1271400 None:intergenic
TAATGGTAACGGGTGGGGCG+GGG 0.417054 1_4:-1271475 Msa0142380:CDS
CAATCTTCCAACTGCTACTT+GGG 0.419596 1_4:+1270787 None:intergenic
GGGGATACCAGCTTGAGCTT+GGG 0.426150 1_4:-1270012 Msa0142380:CDS
TGAGATACTTCAATCCGGTT+GGG 0.434754 1_4:-1270877 Msa0142380:CDS
GCACATGAGAGCGGTGAGAT+TGG 0.438760 1_4:-1270854 Msa0142380:CDS
TGTTGCTTGCCCAATTCCAT+TGG 0.442181 1_4:+1270041 None:intergenic
CCGCTCTCATGTGCCCCAAC+CGG 0.449340 1_4:+1270863 None:intergenic
GATAATGGTAACGGGTGGGG+CGG 0.450585 1_4:-1271477 Msa0142380:CDS
TCAAAATTTATATCTTAAGA+TGG 0.453720 1_4:+1269874 None:intergenic
TCAACGCAGGGAATTTCATC+TGG 0.454641 1_4:+1271080 None:intergenic
CACCGCAGTGCCATCTTTGG+TGG 0.455579 1_4:+1270733 None:intergenic
ATAATGGTAACGGGTGGGGC+GGG 0.455901 1_4:-1271476 Msa0142380:CDS
CACAGGGTTCGCCATTTGGT+TGG 0.459853 1_4:-1271359 Msa0142380:CDS
AATGGTTGCTGCATTTGAAA+AGG 0.465118 1_4:-1270415 Msa0142380:CDS
TACAACTTGGGAACTGGCCG+CGG 0.465961 1_4:-1270453 Msa0142380:CDS
ATAGATAGCAGTAGCATCTC+CGG 0.466954 1_4:+1270242 None:intergenic
AGATTATTGGGTATGCCCCT+TGG 0.469183 1_4:+1270824 None:intergenic
GTGCAGAGACCAATGGAATT+GGG 0.470949 1_4:-1270050 Msa0142380:CDS
AGTGCCTACAACTTGGGAAC+TGG 0.472400 1_4:-1270459 Msa0142380:CDS
TACTTAACCCAAGTAGCAGT+TGG 0.476959 1_4:-1270794 Msa0142380:CDS
AACGATAATGGTAACGGGTG+GGG 0.478155 1_4:-1271480 Msa0142380:CDS
TTTCTTTAGATATATAGATC+AGG 0.479719 1_4:-1269739 Msa0142380:three_prime_UTR
CATAAGGCTGAAAATGAACT+TGG 0.482154 1_4:-1270210 Msa0142380:CDS
CATGATTATCCCACCAAAGA+TGG 0.483974 1_4:-1270743 Msa0142380:CDS
TGAACTGCATGTATAACAAA+AGG 0.488211 1_4:+1269847 None:intergenic
CATCTGCCAGGTCCATTACA+TGG 0.489946 1_4:+1270615 None:intergenic
GGTTGTAGTGCCTACAACTT+GGG 0.490332 1_4:-1270465 Msa0142380:CDS
ATTGGGCAAGCAACAATCCA+TGG 0.492922 1_4:-1270033 Msa0142380:CDS
CCGTCATGGAAGCTGTCCAC+AGG 0.495003 1_4:-1271376 Msa0142380:CDS
CGGTACATCAGTGCTTCAAA+TGG 0.497630 1_4:-1270433 Msa0142380:CDS
CTGAGATACTTCAATCCGGT+TGG 0.503362 1_4:-1270878 Msa0142380:CDS
TATCTATGCATCTACGCATA+AGG 0.505409 1_4:-1270226 Msa0142380:CDS
GTGAGATTGGCGAAGATCCA+AGG 0.505565 1_4:-1270841 Msa0142380:CDS
GTGGATCACAGCGTCAAACT+TGG 0.505767 1_4:+1271256 None:intergenic
AGGCTGAAAATGAACTTGGT+TGG 0.510946 1_4:-1270206 Msa0142380:CDS
TGACCATAAACGTTGAGCTC+GGG 0.516024 1_4:+1270764 None:intergenic
GTAGCATCTCCGGGCCTCCT+CGG 0.516501 1_4:+1270252 None:intergenic
ACGGGACTTTATCCATGTAA+TGG 0.518510 1_4:-1270627 Msa0142380:CDS
GATGGTAGTATGGTAGAAGA+AGG 0.521298 1_4:+1269892 None:intergenic
AGGTTGTAGTGCCTACAACT+TGG 0.522897 1_4:-1270466 Msa0142380:CDS
GCGGCCAGTTCCCAAGTTGT+AGG 0.524177 1_4:+1270455 None:intergenic
CAGCAATGTGACCATCTGCC+AGG 0.524516 1_4:+1270603 None:intergenic
CTCTGCGACACTTTCTCCCA+CGG 0.527424 1_4:+1271217 None:intergenic
ACTGCTACTTGGGTTAAGTA+AGG 0.528316 1_4:+1270797 None:intergenic
GAGATACTTCAATCCGGTTG+GGG 0.536252 1_4:-1270876 Msa0142380:CDS
AAAATGTGTCCGAGGAGGCC+CGG 0.536292 1_4:-1270261 Msa0142380:CDS
GACGCTGTGATCCACTTTGG+TGG 0.540445 1_4:-1271248 Msa0142380:CDS
ACAAAATACAAGAGAATGAG+AGG 0.545453 1_4:+1269915 None:intergenic
AGGAAAACGATAATGGTAAC+GGG 0.546669 1_4:-1271485 Msa0142380:CDS
TTGATTGACAGGGCAAAATA+CGG 0.547401 1_4:-1270085 Msa0142380:intron
ATGGTGAAAGCGGAGGTAGT+TGG 0.547626 1_4:+1271325 None:intergenic
TCTCCAACTCTTGCTTGTTG+CGG 0.553361 1_4:+1271294 None:intergenic
ATTGGAAAGAGATGGTGAGT+GGG 0.558504 1_4:-1271526 None:intergenic
AAAGTTGAGGACCAACCAAA+TGG 0.558547 1_4:+1271348 None:intergenic
GGCAATACCAATCGCCGGAA+AGG 0.558874 1_4:-1271505 Msa0142380:CDS
CTTTGGTGGTCTGAAAGCCG+TGG 0.561091 1_4:-1271234 Msa0142380:CDS
TGAGATTGGCGAAGATCCAA+GGG 0.561571 1_4:-1270840 Msa0142380:CDS
TCTCCGCAACAAGCAAGAGT+TGG 0.561707 1_4:-1271297 Msa0142380:CDS
TTGGGCAAGCAACAATCCAT+GGG 0.563515 1_4:-1270032 Msa0142380:CDS
CAGGGCAAAATACGGTATAG+AGG 0.565533 1_4:-1270077 Msa0142380:CDS
ATTTGAAAAGGCTTCTGGCA+AGG 0.566930 1_4:-1270403 Msa0142380:intron
TCCCAAACCCAAGCTCAAGC+TGG 0.567837 1_4:+1270005 None:intergenic
ATTGCTGAGATACTTCAATC+CGG 0.576619 1_4:-1270882 Msa0142380:CDS
ATGACCATAAACGTTGAGCT+CGG 0.577684 1_4:+1270763 None:intergenic
GATTGCACGAGATATTCAAA+AGG 0.578799 1_4:-1270927 Msa0142380:CDS
CTTTATCCATGTAATGGACC+TGG 0.579239 1_4:-1270621 Msa0142380:CDS
CATGTAATGGACCTGGCAGA+TGG 0.583826 1_4:-1270614 Msa0142380:CDS
AGCAATATTATCCTCCACTC+TGG 0.589937 1_4:+1270899 None:intergenic
TTCAAAAGGCAGAGCCAGAG+TGG 0.592430 1_4:-1270913 Msa0142380:CDS
ATGAAGTGTATATGTGTGGA+AGG 0.593615 1_4:+1269946 None:intergenic
AGCTCAAGCTGGTATCCCCA+TGG 0.594214 1_4:+1270016 None:intergenic
TTTGACGCTGTGATCCACTT+TGG 0.595864 1_4:-1271251 Msa0142380:CDS
CGGAGGTAGTTGGAAAGTTG+AGG 0.595990 1_4:+1271335 None:intergenic
GAGTGGGCAATACCAATCGC+CGG 0.602467 1_4:-1271510 Msa0142380:CDS
TAGATAGCAGTAGCATCTCC+GGG 0.603256 1_4:+1270243 None:intergenic
AAACGATAATGGTAACGGGT+GGG 0.605066 1_4:-1271481 Msa0142380:CDS
CAGGTGGAAGTCCTCAACGC+AGG 0.605927 1_4:+1271067 None:intergenic
GATTGGAAAGAGATGGTGAG+TGG 0.608418 1_4:-1271527 None:intergenic
AGGAGATGTGCAGAGACCAA+TGG 0.609293 1_4:-1270057 Msa0142380:CDS
ACCGCAGTGCCATCTTTGGT+GGG 0.615427 1_4:+1270734 None:intergenic
AAGGAAAACGATAATGGTAA+CGG 0.616022 1_4:-1271486 Msa0142380:CDS
CGTCATGGAAGCTGTCCACA+GGG 0.616430 1_4:-1271375 Msa0142380:CDS
AAGGATTCATGGCTTGCAGG+TGG 0.618135 1_4:+1271051 None:intergenic
AAATTTCTCAGTGTCATTTG+GGG 0.619413 1_4:-1269709 Msa0142380:three_prime_UTR
CGGCTTTCAGACCACCAAAG+TGG 0.621055 1_4:+1271237 None:intergenic
TTGTGATCAAAATATTTGAG+TGG 0.621926 1_4:+1271194 None:intergenic
TTTGGTGGTCTGAAAGCCGT+GGG 0.624204 1_4:-1271233 Msa0142380:CDS
AGGTGGAAGTCCTCAACGCA+GGG 0.631756 1_4:+1271068 None:intergenic
AGATGAAATTCCCTGCGTTG+AGG 0.633891 1_4:-1271078 Msa0142380:CDS
GAAGGTGAAAGTGAAGATGA+AGG 0.634248 1_4:+1269964 None:intergenic
CAATCTCTACAATTCCGTCA+TGG 0.635522 1_4:-1271390 Msa0142380:CDS
AAAACGATAATGGTAACGGG+TGG 0.639831 1_4:-1271482 Msa0142380:CDS
CCGGTTGGGGCACATGAGAG+CGG 0.640769 1_4:-1270863 Msa0142380:CDS
TTCCTATTAAAATGTGTCCG+AGG 0.642928 1_4:-1270269 Msa0142380:CDS
GTCGTTCAGCTTCTAAAACA+GGG 0.648315 1_4:-1271434 Msa0142380:CDS
AAAAGGCAGAGCCAGAGTGG+AGG 0.653042 1_4:-1270910 Msa0142380:CDS
GGAGATCGACATGGTGAAAG+CGG 0.655928 1_4:+1271315 None:intergenic
CTATTAAAATGTGTCCGAGG+AGG 0.658139 1_4:-1270266 Msa0142380:CDS
GCTTGTTGCGGAGATCGACA+TGG 0.660195 1_4:+1271306 None:intergenic
TAGGATGAAGTGTATATGTG+TGG 0.662538 1_4:+1269942 None:intergenic
TTGACCATAAACTGCTGCAG+AGG 0.664691 1_4:+1271103 None:intergenic
CAACCAAATGGCGAACCCTG+TGG 0.665060 1_4:+1271360 None:intergenic
GATCGACATGGTGAAAGCGG+AGG 0.669740 1_4:+1271318 None:intergenic
CCTGTGGACAGCTTCCATGA+CGG 0.679733 1_4:+1271376 None:intergenic
GAATCCTTATGGAAGAACCA+AGG 0.701863 1_4:-1271036 Msa0142380:intron
GGGGTTCATTGGATCACACA+CGG 0.730801 1_4:-1271456 Msa0142380:CDS
TTTGAAGCACTGATGTACCG+CGG 0.744540 1_4:+1270436 None:intergenic
TGGGCAAGCAACAATCCATG+GGG 0.753069 1_4:-1270031 Msa0142380:CDS
GAGATTGGCGAAGATCCAAG+GGG 0.771146 1_4:-1270839 Msa0142380:CDS
TCCCACCAAAGATGGCACTG+CGG 0.774633 1_4:-1270735 Msa0142380:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTATTCATTATTTTAA+TGG + chr1_4:1270228-1270247 None:intergenic 10.0%
!! AATTAAATACTGTTATTATT+AGG - chr1_4:1270733-1270752 Msa0142380:intron 10.0%
!!! ATCATTATTCATTATTTTAA+TGG + chr1_4:1270228-1270247 None:intergenic 10.0%
!! AATTAAATACTGTTATTATT+AGG - chr1_4:1270733-1270752 Msa0142380:intron 10.0%
!! TCAAAATTTATATCTTAAGA+TGG + chr1_4:1271348-1271367 None:intergenic 15.0%
!! TCAAAATTTATATCTTAAGA+TGG + chr1_4:1271348-1271367 None:intergenic 15.0%
!! TAAATTTCAGTGTAAAAAGA+TGG - chr1_4:1270084-1270103 Msa0142380:intron 20.0%
!! ATAAACAGTTAAATGTAAGT+AGG + chr1_4:1270682-1270701 None:intergenic 20.0%
!! AGAATACAATACAATACATT+CGG + chr1_4:1270887-1270906 None:intergenic 20.0%
!!! ACATTTTAATAGGAATTTTC+TGG + chr1_4:1270945-1270964 None:intergenic 20.0%
!! AGTACTTTACTATATTTCAT+TGG - chr1_4:1271041-1271060 Msa0142380:CDS 20.0%
!! GTACTTTACTATATTTCATT+GGG - chr1_4:1271042-1271061 Msa0142380:CDS 20.0%
!! TTTCTTTAGATATATAGATC+AGG - chr1_4:1271480-1271499 Msa0142380:CDS 20.0%
!! TAAATTTCAGTGTAAAAAGA+TGG - chr1_4:1270084-1270103 Msa0142380:intron 20.0%
!! ATAAACAGTTAAATGTAAGT+AGG + chr1_4:1270682-1270701 None:intergenic 20.0%
!! AGAATACAATACAATACATT+CGG + chr1_4:1270887-1270906 None:intergenic 20.0%
!!! ACATTTTAATAGGAATTTTC+TGG + chr1_4:1270945-1270964 None:intergenic 20.0%
!! AGTACTTTACTATATTTCAT+TGG - chr1_4:1271041-1271060 Msa0142380:CDS 20.0%
!! GTACTTTACTATATTTCATT+GGG - chr1_4:1271042-1271061 Msa0142380:CDS 20.0%
!! TTTCTTTAGATATATAGATC+AGG - chr1_4:1271480-1271499 Msa0142380:CDS 20.0%
! TTGTGATCAAAATATTTGAG+TGG + chr1_4:1270028-1270047 None:intergenic 25.0%
!!! CAAATATTTTGATCACAACT+TGG - chr1_4:1270030-1270049 Msa0142380:CDS 25.0%
! ATGAATAATGATACTTAAGC+TGG - chr1_4:1270236-1270255 Msa0142380:CDS 25.0%
! TCAGTATCAGAATATATGTT+GGG + chr1_4:1270555-1270574 None:intergenic 25.0%
! GACAATATATGAATCAGATA+CGG - chr1_4:1270573-1270592 Msa0142380:CDS 25.0%
! ACAATATATGAATCAGATAC+GGG - chr1_4:1270574-1270593 Msa0142380:CDS 25.0%
! AACAGTATTTAATTAAGTCC+TGG + chr1_4:1270727-1270746 None:intergenic 25.0%
! TTTATTTACGATTGATTGAC+AGG - chr1_4:1271123-1271142 Msa0142380:CDS 25.0%
! TTATTTACGATTGATTGACA+GGG - chr1_4:1271124-1271143 Msa0142380:CDS 25.0%
! TATATCTTAAGATGGTAGTA+TGG + chr1_4:1271340-1271359 None:intergenic 25.0%
! TTGTGATCAAAATATTTGAG+TGG + chr1_4:1270028-1270047 None:intergenic 25.0%
!!! CAAATATTTTGATCACAACT+TGG - chr1_4:1270030-1270049 Msa0142380:CDS 25.0%
! ATGAATAATGATACTTAAGC+TGG - chr1_4:1270236-1270255 Msa0142380:CDS 25.0%
! TCAGTATCAGAATATATGTT+GGG + chr1_4:1270555-1270574 None:intergenic 25.0%
! GACAATATATGAATCAGATA+CGG - chr1_4:1270573-1270592 Msa0142380:CDS 25.0%
! ACAATATATGAATCAGATAC+GGG - chr1_4:1270574-1270593 Msa0142380:CDS 25.0%
! AACAGTATTTAATTAAGTCC+TGG + chr1_4:1270727-1270746 None:intergenic 25.0%
! TTTATTTACGATTGATTGAC+AGG - chr1_4:1271123-1271142 Msa0142380:CDS 25.0%
! TTATTTACGATTGATTGACA+GGG - chr1_4:1271124-1271143 Msa0142380:CDS 25.0%
! TATATCTTAAGATGGTAGTA+TGG + chr1_4:1271340-1271359 None:intergenic 25.0%
! AAGGAAAACGATAATGGTAA+CGG - chr1_4:1269733-1269752 Msa0142380:three_prime_UTR 30.0%
ATTGTAGAGATTGTCGATAA+TGG + chr1_4:1269822-1269841 None:intergenic 30.0%
!!! TATTTTGATCACAACTTGGT+TGG - chr1_4:1270034-1270053 Msa0142380:CDS 30.0%
AGTCATCACTTGAAAAAGAT+TGG + chr1_4:1270065-1270084 None:intergenic 30.0%
ATATACTGAGTTAAGTACCT+TGG + chr1_4:1270203-1270222 None:intergenic 30.0%
! AAGTAAGGCATCAGATTATT+GGG + chr1_4:1270410-1270429 None:intergenic 30.0%
! TAAGTAAGGCATCAGATTAT+TGG + chr1_4:1270411-1270430 None:intergenic 30.0%
GTCAGTATCAGAATATATGT+TGG + chr1_4:1270556-1270575 None:intergenic 30.0%
CTTTACTATATTTCATTGGG+AGG - chr1_4:1271045-1271064 Msa0142380:CDS 30.0%
ACAAAATACAAGAGAATGAG+AGG + chr1_4:1271307-1271326 None:intergenic 30.0%
TGAACTGCATGTATAACAAA+AGG + chr1_4:1271375-1271394 None:intergenic 30.0%
! TAATCAAAGAGCCTTTTTCT+AGG + chr1_4:1271427-1271446 None:intergenic 30.0%
CAAATGACACTGAGAAATTT+GGG + chr1_4:1271510-1271529 None:intergenic 30.0%
!! CAAATTTCTCAGTGTCATTT+GGG - chr1_4:1271509-1271528 Msa0142380:CDS 30.0%
!! AAATTTCTCAGTGTCATTTG+GGG - chr1_4:1271510-1271529 Msa0142380:CDS 30.0%
! AAGGAAAACGATAATGGTAA+CGG - chr1_4:1269733-1269752 Msa0142380:three_prime_UTR 30.0%
ATTGTAGAGATTGTCGATAA+TGG + chr1_4:1269822-1269841 None:intergenic 30.0%
!!! TATTTTGATCACAACTTGGT+TGG - chr1_4:1270034-1270053 Msa0142380:CDS 30.0%
AGTCATCACTTGAAAAAGAT+TGG + chr1_4:1270065-1270084 None:intergenic 30.0%
ATATACTGAGTTAAGTACCT+TGG + chr1_4:1270203-1270222 None:intergenic 30.0%
! AAGTAAGGCATCAGATTATT+GGG + chr1_4:1270410-1270429 None:intergenic 30.0%
! TAAGTAAGGCATCAGATTAT+TGG + chr1_4:1270411-1270430 None:intergenic 30.0%
GTCAGTATCAGAATATATGT+TGG + chr1_4:1270556-1270575 None:intergenic 30.0%
CTTTACTATATTTCATTGGG+AGG - chr1_4:1271045-1271064 Msa0142380:CDS 30.0%
ACAAAATACAAGAGAATGAG+AGG + chr1_4:1271307-1271326 None:intergenic 30.0%
TGAACTGCATGTATAACAAA+AGG + chr1_4:1271375-1271394 None:intergenic 30.0%
! TAATCAAAGAGCCTTTTTCT+AGG + chr1_4:1271427-1271446 None:intergenic 30.0%
CAAATGACACTGAGAAATTT+GGG + chr1_4:1271510-1271529 None:intergenic 30.0%
!! CAAATTTCTCAGTGTCATTT+GGG - chr1_4:1271509-1271528 Msa0142380:CDS 30.0%
!! AAATTTCTCAGTGTCATTTG+GGG - chr1_4:1271510-1271529 Msa0142380:CDS 30.0%
! ACCATTATCGTTTTCCTTTC+CGG + chr1_4:1269731-1269750 None:intergenic 35.0%
! AGGAAAACGATAATGGTAAC+GGG - chr1_4:1269734-1269753 Msa0142380:three_prime_UTR 35.0%
! TGATATATGACAGCTTTTCG+CGG - chr1_4:1270265-1270284 Msa0142380:CDS 35.0%
GATTGCACGAGATATTCAAA+AGG - chr1_4:1270292-1270311 Msa0142380:intron 35.0%
ATTGCTGAGATACTTCAATC+CGG - chr1_4:1270337-1270356 Msa0142380:intron 35.0%
AATATATGTTGGGTGCTAAC+TGG + chr1_4:1270545-1270564 None:intergenic 35.0%
! CTTTTTGCGACAGACAAAAT+CGG - chr1_4:1270650-1270669 Msa0142380:intron 35.0%
ATTGTAGATTAGAGCTAACC+AGG - chr1_4:1270706-1270725 Msa0142380:intron 35.0%
AATGGTTGCTGCATTTGAAA+AGG - chr1_4:1270804-1270823 Msa0142380:CDS 35.0%
TGTATTCTTGATCCTTCGTT+TGG - chr1_4:1270899-1270918 Msa0142380:CDS 35.0%
TTCCTATTAAAATGTGTCCG+AGG - chr1_4:1270950-1270969 Msa0142380:intron 35.0%
TATCTATGCATCTACGCATA+AGG - chr1_4:1270993-1271012 Msa0142380:intron 35.0%
CATAAGGCTGAAAATGAACT+TGG - chr1_4:1271009-1271028 Msa0142380:intron 35.0%
ACTATATTTCATTGGGAGGA+AGG - chr1_4:1271049-1271068 Msa0142380:CDS 35.0%
CTATATTTCATTGGGAGGAA+GGG - chr1_4:1271050-1271069 Msa0142380:CDS 35.0%
TTGATTGACAGGGCAAAATA+CGG - chr1_4:1271134-1271153 Msa0142380:CDS 35.0%
ATGAAGTGTATATGTGTGGA+AGG + chr1_4:1271276-1271295 None:intergenic 35.0%
TAGGATGAAGTGTATATGTG+TGG + chr1_4:1271280-1271299 None:intergenic 35.0%
CCAAATGACACTGAGAAATT+TGG + chr1_4:1271511-1271530 None:intergenic 35.0%
! CCAAATTTCTCAGTGTCATT+TGG - chr1_4:1271508-1271527 Msa0142380:CDS 35.0%
! ACCATTATCGTTTTCCTTTC+CGG + chr1_4:1269731-1269750 None:intergenic 35.0%
! AGGAAAACGATAATGGTAAC+GGG - chr1_4:1269734-1269753 Msa0142380:three_prime_UTR 35.0%
! TGATATATGACAGCTTTTCG+CGG - chr1_4:1270265-1270284 Msa0142380:CDS 35.0%
GATTGCACGAGATATTCAAA+AGG - chr1_4:1270292-1270311 Msa0142380:intron 35.0%
ATTGCTGAGATACTTCAATC+CGG - chr1_4:1270337-1270356 Msa0142380:intron 35.0%
AATATATGTTGGGTGCTAAC+TGG + chr1_4:1270545-1270564 None:intergenic 35.0%
! CTTTTTGCGACAGACAAAAT+CGG - chr1_4:1270650-1270669 Msa0142380:intron 35.0%
ATTGTAGATTAGAGCTAACC+AGG - chr1_4:1270706-1270725 Msa0142380:intron 35.0%
AATGGTTGCTGCATTTGAAA+AGG - chr1_4:1270804-1270823 Msa0142380:CDS 35.0%
TGTATTCTTGATCCTTCGTT+TGG - chr1_4:1270899-1270918 Msa0142380:CDS 35.0%
TTCCTATTAAAATGTGTCCG+AGG - chr1_4:1270950-1270969 Msa0142380:intron 35.0%
TATCTATGCATCTACGCATA+AGG - chr1_4:1270993-1271012 Msa0142380:intron 35.0%
CATAAGGCTGAAAATGAACT+TGG - chr1_4:1271009-1271028 Msa0142380:intron 35.0%
ACTATATTTCATTGGGAGGA+AGG - chr1_4:1271049-1271068 Msa0142380:CDS 35.0%
CTATATTTCATTGGGAGGAA+GGG - chr1_4:1271050-1271069 Msa0142380:CDS 35.0%
TTGATTGACAGGGCAAAATA+CGG - chr1_4:1271134-1271153 Msa0142380:CDS 35.0%
ATGAAGTGTATATGTGTGGA+AGG + chr1_4:1271276-1271295 None:intergenic 35.0%
TAGGATGAAGTGTATATGTG+TGG + chr1_4:1271280-1271299 None:intergenic 35.0%
CCAAATGACACTGAGAAATT+TGG + chr1_4:1271511-1271530 None:intergenic 35.0%
! CCAAATTTCTCAGTGTCATT+TGG - chr1_4:1271508-1271527 Msa0142380:CDS 35.0%
!! AAAACGATAATGGTAACGGG+TGG - chr1_4:1269737-1269756 Msa0142380:three_prime_UTR 40.0%
!! AAACGATAATGGTAACGGGT+GGG - chr1_4:1269738-1269757 Msa0142380:three_prime_UTR 40.0%
!! GTCGTTCAGCTTCTAAAACA+GGG - chr1_4:1269785-1269804 Msa0142380:three_prime_UTR 40.0%
CAATCTCTACAATTCCGTCA+TGG - chr1_4:1269829-1269848 Msa0142380:three_prime_UTR 40.0%
AAAGTTGAGGACCAACCAAA+TGG + chr1_4:1269874-1269893 None:intergenic 40.0%
GGTTCTTCCATAAGGATTCA+TGG + chr1_4:1270182-1270201 None:intergenic 40.0%
GAATCCTTATGGAAGAACCA+AGG - chr1_4:1270183-1270202 Msa0142380:intron 40.0%
! AGTACCTTGGTTCTTCCATA+AGG + chr1_4:1270190-1270209 None:intergenic 40.0%
AGCAATATTATCCTCCACTC+TGG + chr1_4:1270323-1270342 None:intergenic 40.0%
TGAGATACTTCAATCCGGTT+GGG - chr1_4:1270342-1270361 Msa0142380:intron 40.0%
! ACTGCTACTTGGGTTAAGTA+AGG + chr1_4:1270425-1270444 None:intergenic 40.0%
TACTTAACCCAAGTAGCAGT+TGG - chr1_4:1270425-1270444 Msa0142380:CDS 40.0%
! CAATCTTCCAACTGCTACTT+GGG + chr1_4:1270435-1270454 None:intergenic 40.0%
ATGACCATAAACGTTGAGCT+CGG + chr1_4:1270459-1270478 None:intergenic 40.0%
CATGATTATCCCACCAAAGA+TGG - chr1_4:1270476-1270495 Msa0142380:intron 40.0%
ACGGGACTTTATCCATGTAA+TGG - chr1_4:1270592-1270611 Msa0142380:CDS 40.0%
!! CTTTATCCATGTAATGGACC+TGG - chr1_4:1270598-1270617 Msa0142380:CDS 40.0%
ATTTGAAAAGGCTTCTGGCA+AGG - chr1_4:1270816-1270835 Msa0142380:CDS 40.0%
TCTGGAAAACAGATCCAAGA+AGG + chr1_4:1270927-1270946 None:intergenic 40.0%
!! CTCCTCGGACACATTTTAAT+AGG + chr1_4:1270955-1270974 None:intergenic 40.0%
CTATTAAAATGTGTCCGAGG+AGG - chr1_4:1270953-1270972 Msa0142380:intron 40.0%
ATAGATAGCAGTAGCATCTC+CGG + chr1_4:1270980-1270999 None:intergenic 40.0%
AGGCTGAAAATGAACTTGGT+TGG - chr1_4:1271013-1271032 Msa0142380:intron 40.0%
GAAGGTGAAAGTGAAGATGA+AGG + chr1_4:1271258-1271277 None:intergenic 40.0%
CAAGAGAATGAGAGGATAGT+AGG + chr1_4:1271299-1271318 None:intergenic 40.0%
GATGGTAGTATGGTAGAAGA+AGG + chr1_4:1271330-1271349 None:intergenic 40.0%
AAGACCATGTGCCTAGAAAA+AGG - chr1_4:1271413-1271432 Msa0142380:CDS 40.0%
!! AAAACGATAATGGTAACGGG+TGG - chr1_4:1269737-1269756 Msa0142380:three_prime_UTR 40.0%
!! AAACGATAATGGTAACGGGT+GGG - chr1_4:1269738-1269757 Msa0142380:three_prime_UTR 40.0%
!! GTCGTTCAGCTTCTAAAACA+GGG - chr1_4:1269785-1269804 Msa0142380:three_prime_UTR 40.0%
CAATCTCTACAATTCCGTCA+TGG - chr1_4:1269829-1269848 Msa0142380:three_prime_UTR 40.0%
AAAGTTGAGGACCAACCAAA+TGG + chr1_4:1269874-1269893 None:intergenic 40.0%
GGTTCTTCCATAAGGATTCA+TGG + chr1_4:1270182-1270201 None:intergenic 40.0%
GAATCCTTATGGAAGAACCA+AGG - chr1_4:1270183-1270202 Msa0142380:intron 40.0%
! AGTACCTTGGTTCTTCCATA+AGG + chr1_4:1270190-1270209 None:intergenic 40.0%
AGCAATATTATCCTCCACTC+TGG + chr1_4:1270323-1270342 None:intergenic 40.0%
TGAGATACTTCAATCCGGTT+GGG - chr1_4:1270342-1270361 Msa0142380:intron 40.0%
! ACTGCTACTTGGGTTAAGTA+AGG + chr1_4:1270425-1270444 None:intergenic 40.0%
TACTTAACCCAAGTAGCAGT+TGG - chr1_4:1270425-1270444 Msa0142380:CDS 40.0%
! CAATCTTCCAACTGCTACTT+GGG + chr1_4:1270435-1270454 None:intergenic 40.0%
ATGACCATAAACGTTGAGCT+CGG + chr1_4:1270459-1270478 None:intergenic 40.0%
CATGATTATCCCACCAAAGA+TGG - chr1_4:1270476-1270495 Msa0142380:intron 40.0%
ACGGGACTTTATCCATGTAA+TGG - chr1_4:1270592-1270611 Msa0142380:CDS 40.0%
!! CTTTATCCATGTAATGGACC+TGG - chr1_4:1270598-1270617 Msa0142380:CDS 40.0%
ATTTGAAAAGGCTTCTGGCA+AGG - chr1_4:1270816-1270835 Msa0142380:CDS 40.0%
TCTGGAAAACAGATCCAAGA+AGG + chr1_4:1270927-1270946 None:intergenic 40.0%
!! CTCCTCGGACACATTTTAAT+AGG + chr1_4:1270955-1270974 None:intergenic 40.0%
CTATTAAAATGTGTCCGAGG+AGG - chr1_4:1270953-1270972 Msa0142380:intron 40.0%
ATAGATAGCAGTAGCATCTC+CGG + chr1_4:1270980-1270999 None:intergenic 40.0%
AGGCTGAAAATGAACTTGGT+TGG - chr1_4:1271013-1271032 Msa0142380:intron 40.0%
GAAGGTGAAAGTGAAGATGA+AGG + chr1_4:1271258-1271277 None:intergenic 40.0%
CAAGAGAATGAGAGGATAGT+AGG + chr1_4:1271299-1271318 None:intergenic 40.0%
GATGGTAGTATGGTAGAAGA+AGG + chr1_4:1271330-1271349 None:intergenic 40.0%
AAGACCATGTGCCTAGAAAA+AGG - chr1_4:1271413-1271432 Msa0142380:CDS 40.0%
GCCGGAAAGGAAAACGATAA+TGG - chr1_4:1269727-1269746 Msa0142380:three_prime_UTR 45.0%
!! AACGATAATGGTAACGGGTG+GGG - chr1_4:1269739-1269758 Msa0142380:three_prime_UTR 45.0%
!! GGTCGTTCAGCTTCTAAAAC+AGG - chr1_4:1269784-1269803 Msa0142380:three_prime_UTR 45.0%
! TCTCCAACTCTTGCTTGTTG+CGG + chr1_4:1269928-1269947 None:intergenic 45.0%
TTTGACGCTGTGATCCACTT+TGG - chr1_4:1269968-1269987 Msa0142380:three_prime_UTR 45.0%
TCATCCTCTGCAGCAGTTTA+TGG - chr1_4:1270112-1270131 Msa0142380:intron 45.0%
TTGACCATAAACTGCTGCAG+AGG + chr1_4:1270119-1270138 None:intergenic 45.0%
TCAACGCAGGGAATTTCATC+TGG + chr1_4:1270142-1270161 None:intergenic 45.0%
AGATGAAATTCCCTGCGTTG+AGG - chr1_4:1270141-1270160 Msa0142380:intron 45.0%
! CATAAGGATTCATGGCTTGC+AGG + chr1_4:1270174-1270193 None:intergenic 45.0%
CTGCAAGCCATGAATCCTTA+TGG - chr1_4:1270172-1270191 Msa0142380:intron 45.0%
CTGAGATACTTCAATCCGGT+TGG - chr1_4:1270341-1270360 Msa0142380:intron 45.0%
GAGATACTTCAATCCGGTTG+GGG - chr1_4:1270343-1270362 Msa0142380:intron 45.0%
TGAGATTGGCGAAGATCCAA+GGG - chr1_4:1270379-1270398 Msa0142380:intron 45.0%
AGATTATTGGGTATGCCCCT+TGG + chr1_4:1270398-1270417 None:intergenic 45.0%
GCAATCTTCCAACTGCTACT+TGG + chr1_4:1270436-1270455 None:intergenic 45.0%
TGACCATAAACGTTGAGCTC+GGG + chr1_4:1270458-1270477 None:intergenic 45.0%
TTGCGACAGACAAAATCGGT+AGG - chr1_4:1270654-1270673 Msa0142380:intron 45.0%
AGGTTGTAGTGCCTACAACT+TGG - chr1_4:1270753-1270772 Msa0142380:CDS 45.0%
GGTTGTAGTGCCTACAACTT+GGG - chr1_4:1270754-1270773 Msa0142380:CDS 45.0%
!! TTTGAAGCACTGATGTACCG+CGG + chr1_4:1270786-1270805 None:intergenic 45.0%
CGGTACATCAGTGCTTCAAA+TGG - chr1_4:1270786-1270805 Msa0142380:CDS 45.0%
GCTGCATTTGAAAAGGCTTC+TGG - chr1_4:1270811-1270830 Msa0142380:CDS 45.0%
TAGATAGCAGTAGCATCTCC+GGG + chr1_4:1270979-1270998 None:intergenic 45.0%
TATTTCATTGGGAGGAAGGG+AGG - chr1_4:1271053-1271072 Msa0142380:CDS 45.0%
CAGGGCAAAATACGGTATAG+AGG - chr1_4:1271142-1271161 Msa0142380:CDS 45.0%
TGTGCAGAGACCAATGGAAT+TGG - chr1_4:1271168-1271187 Msa0142380:CDS 45.0%
GTGCAGAGACCAATGGAATT+GGG - chr1_4:1271169-1271188 Msa0142380:CDS 45.0%
! TGTTGCTTGCCCAATTCCAT+TGG + chr1_4:1271181-1271200 None:intergenic 45.0%
ATTGGGCAAGCAACAATCCA+TGG - chr1_4:1271186-1271205 Msa0142380:CDS 45.0%
TTGGGCAAGCAACAATCCAT+GGG - chr1_4:1271187-1271206 Msa0142380:CDS 45.0%
! AGAGCCTTTTTCTAGGCACA+TGG + chr1_4:1271420-1271439 None:intergenic 45.0%
GCCGGAAAGGAAAACGATAA+TGG - chr1_4:1269727-1269746 Msa0142380:three_prime_UTR 45.0%
!! AACGATAATGGTAACGGGTG+GGG - chr1_4:1269739-1269758 Msa0142380:three_prime_UTR 45.0%
!! GGTCGTTCAGCTTCTAAAAC+AGG - chr1_4:1269784-1269803 Msa0142380:three_prime_UTR 45.0%
! TCTCCAACTCTTGCTTGTTG+CGG + chr1_4:1269928-1269947 None:intergenic 45.0%
TTTGACGCTGTGATCCACTT+TGG - chr1_4:1269968-1269987 Msa0142380:three_prime_UTR 45.0%
TCATCCTCTGCAGCAGTTTA+TGG - chr1_4:1270112-1270131 Msa0142380:intron 45.0%
TTGACCATAAACTGCTGCAG+AGG + chr1_4:1270119-1270138 None:intergenic 45.0%
TCAACGCAGGGAATTTCATC+TGG + chr1_4:1270142-1270161 None:intergenic 45.0%
AGATGAAATTCCCTGCGTTG+AGG - chr1_4:1270141-1270160 Msa0142380:intron 45.0%
! CATAAGGATTCATGGCTTGC+AGG + chr1_4:1270174-1270193 None:intergenic 45.0%
CTGCAAGCCATGAATCCTTA+TGG - chr1_4:1270172-1270191 Msa0142380:intron 45.0%
CTGAGATACTTCAATCCGGT+TGG - chr1_4:1270341-1270360 Msa0142380:intron 45.0%
GAGATACTTCAATCCGGTTG+GGG - chr1_4:1270343-1270362 Msa0142380:intron 45.0%
TGAGATTGGCGAAGATCCAA+GGG - chr1_4:1270379-1270398 Msa0142380:intron 45.0%
AGATTATTGGGTATGCCCCT+TGG + chr1_4:1270398-1270417 None:intergenic 45.0%
GCAATCTTCCAACTGCTACT+TGG + chr1_4:1270436-1270455 None:intergenic 45.0%
TGACCATAAACGTTGAGCTC+GGG + chr1_4:1270458-1270477 None:intergenic 45.0%
TTGCGACAGACAAAATCGGT+AGG - chr1_4:1270654-1270673 Msa0142380:intron 45.0%
AGGTTGTAGTGCCTACAACT+TGG - chr1_4:1270753-1270772 Msa0142380:CDS 45.0%
GGTTGTAGTGCCTACAACTT+GGG - chr1_4:1270754-1270773 Msa0142380:CDS 45.0%
!! TTTGAAGCACTGATGTACCG+CGG + chr1_4:1270786-1270805 None:intergenic 45.0%
CGGTACATCAGTGCTTCAAA+TGG - chr1_4:1270786-1270805 Msa0142380:CDS 45.0%
GCTGCATTTGAAAAGGCTTC+TGG - chr1_4:1270811-1270830 Msa0142380:CDS 45.0%
TAGATAGCAGTAGCATCTCC+GGG + chr1_4:1270979-1270998 None:intergenic 45.0%
TATTTCATTGGGAGGAAGGG+AGG - chr1_4:1271053-1271072 Msa0142380:CDS 45.0%
CAGGGCAAAATACGGTATAG+AGG - chr1_4:1271142-1271161 Msa0142380:CDS 45.0%
TGTGCAGAGACCAATGGAAT+TGG - chr1_4:1271168-1271187 Msa0142380:CDS 45.0%
GTGCAGAGACCAATGGAATT+GGG - chr1_4:1271169-1271188 Msa0142380:CDS 45.0%
! TGTTGCTTGCCCAATTCCAT+TGG + chr1_4:1271181-1271200 None:intergenic 45.0%
ATTGGGCAAGCAACAATCCA+TGG - chr1_4:1271186-1271205 Msa0142380:CDS 45.0%
TTGGGCAAGCAACAATCCAT+GGG - chr1_4:1271187-1271206 Msa0142380:CDS 45.0%
! AGAGCCTTTTTCTAGGCACA+TGG + chr1_4:1271420-1271439 None:intergenic 45.0%
! TCGTTTTCCTTTCCGGCGAT+TGG + chr1_4:1269724-1269743 None:intergenic 50.0%
GGGGTTCATTGGATCACACA+CGG - chr1_4:1269763-1269782 Msa0142380:three_prime_UTR 50.0%
CGGAGGTAGTTGGAAAGTTG+AGG + chr1_4:1269887-1269906 None:intergenic 50.0%
ATGGTGAAAGCGGAGGTAGT+TGG + chr1_4:1269897-1269916 None:intergenic 50.0%
GGAGATCGACATGGTGAAAG+CGG + chr1_4:1269907-1269926 None:intergenic 50.0%
TCTCCGCAACAAGCAAGAGT+TGG - chr1_4:1269922-1269941 Msa0142380:three_prime_UTR 50.0%
GTGGATCACAGCGTCAAACT+TGG + chr1_4:1269966-1269985 None:intergenic 50.0%
! TTTGGTGGTCTGAAAGCCGT+GGG - chr1_4:1269986-1270005 Msa0142380:exon 50.0%
! AAGGATTCATGGCTTGCAGG+TGG + chr1_4:1270171-1270190 None:intergenic 50.0%
TTCAAAAGGCAGAGCCAGAG+TGG - chr1_4:1270306-1270325 Msa0142380:intron 50.0%
GTGAGATTGGCGAAGATCCA+AGG - chr1_4:1270378-1270397 Msa0142380:intron 50.0%
GAGATTGGCGAAGATCCAAG+GGG - chr1_4:1270380-1270399 Msa0142380:intron 50.0%
TTGCCCGAGCTCAACGTTTA+TGG - chr1_4:1270452-1270471 Msa0142380:CDS 50.0%
CATCTGCCAGGTCCATTACA+TGG + chr1_4:1270607-1270626 None:intergenic 50.0%
!! CATGTAATGGACCTGGCAGA+TGG - chr1_4:1270605-1270624 Msa0142380:CDS 50.0%
AGTGCCTACAACTTGGGAAC+TGG - chr1_4:1270760-1270779 Msa0142380:CDS 50.0%
! TCCTTCGTTTGGCTCCTTCT+TGG - chr1_4:1270910-1270929 Msa0142380:CDS 50.0%
TCCAAGAAGGAGCCAAACGA+AGG + chr1_4:1270914-1270933 None:intergenic 50.0%
AGGAGATGTGCAGAGACCAA+TGG - chr1_4:1271162-1271181 Msa0142380:CDS 50.0%
TGGGCAAGCAACAATCCATG+GGG - chr1_4:1271188-1271207 Msa0142380:CDS 50.0%
TACCAGCTTGAGCTTGGGTT+TGG - chr1_4:1271212-1271231 Msa0142380:CDS 50.0%
ACCAGCTTGAGCTTGGGTTT+GGG - chr1_4:1271213-1271232 Msa0142380:CDS 50.0%
! TCGTTTTCCTTTCCGGCGAT+TGG + chr1_4:1269724-1269743 None:intergenic 50.0%
GGGGTTCATTGGATCACACA+CGG - chr1_4:1269763-1269782 Msa0142380:three_prime_UTR 50.0%
CGGAGGTAGTTGGAAAGTTG+AGG + chr1_4:1269887-1269906 None:intergenic 50.0%
ATGGTGAAAGCGGAGGTAGT+TGG + chr1_4:1269897-1269916 None:intergenic 50.0%
GGAGATCGACATGGTGAAAG+CGG + chr1_4:1269907-1269926 None:intergenic 50.0%
TCTCCGCAACAAGCAAGAGT+TGG - chr1_4:1269922-1269941 Msa0142380:three_prime_UTR 50.0%
GTGGATCACAGCGTCAAACT+TGG + chr1_4:1269966-1269985 None:intergenic 50.0%
! TTTGGTGGTCTGAAAGCCGT+GGG - chr1_4:1269986-1270005 Msa0142380:exon 50.0%
! AAGGATTCATGGCTTGCAGG+TGG + chr1_4:1270171-1270190 None:intergenic 50.0%
TTCAAAAGGCAGAGCCAGAG+TGG - chr1_4:1270306-1270325 Msa0142380:intron 50.0%
GTGAGATTGGCGAAGATCCA+AGG - chr1_4:1270378-1270397 Msa0142380:intron 50.0%
GAGATTGGCGAAGATCCAAG+GGG - chr1_4:1270380-1270399 Msa0142380:intron 50.0%
TTGCCCGAGCTCAACGTTTA+TGG - chr1_4:1270452-1270471 Msa0142380:CDS 50.0%
CATCTGCCAGGTCCATTACA+TGG + chr1_4:1270607-1270626 None:intergenic 50.0%
!! CATGTAATGGACCTGGCAGA+TGG - chr1_4:1270605-1270624 Msa0142380:CDS 50.0%
AGTGCCTACAACTTGGGAAC+TGG - chr1_4:1270760-1270779 Msa0142380:CDS 50.0%
! TCCTTCGTTTGGCTCCTTCT+TGG - chr1_4:1270910-1270929 Msa0142380:CDS 50.0%
TCCAAGAAGGAGCCAAACGA+AGG + chr1_4:1270914-1270933 None:intergenic 50.0%
AGGAGATGTGCAGAGACCAA+TGG - chr1_4:1271162-1271181 Msa0142380:CDS 50.0%
TGGGCAAGCAACAATCCATG+GGG - chr1_4:1271188-1271207 Msa0142380:CDS 50.0%
TACCAGCTTGAGCTTGGGTT+TGG - chr1_4:1271212-1271231 Msa0142380:CDS 50.0%
ACCAGCTTGAGCTTGGGTTT+GGG - chr1_4:1271213-1271232 Msa0142380:CDS 50.0%
GAGTGGGCAATACCAATCGC+CGG - chr1_4:1269709-1269728 Msa0142380:three_prime_UTR 55.0%
GGCAATACCAATCGCCGGAA+AGG - chr1_4:1269714-1269733 Msa0142380:three_prime_UTR 55.0%
!! GATAATGGTAACGGGTGGGG+CGG - chr1_4:1269742-1269761 Msa0142380:three_prime_UTR 55.0%
!! ATAATGGTAACGGGTGGGGC+GGG - chr1_4:1269743-1269762 Msa0142380:three_prime_UTR 55.0%
CCTGTGGACAGCTTCCATGA+CGG + chr1_4:1269846-1269865 None:intergenic 55.0%
CGTCATGGAAGCTGTCCACA+GGG - chr1_4:1269844-1269863 Msa0142380:three_prime_UTR 55.0%
TGTCCACAGGGTTCGCCATT+TGG - chr1_4:1269856-1269875 Msa0142380:three_prime_UTR 55.0%
CAACCAAATGGCGAACCCTG+TGG + chr1_4:1269862-1269881 None:intergenic 55.0%
CACAGGGTTCGCCATTTGGT+TGG - chr1_4:1269860-1269879 Msa0142380:three_prime_UTR 55.0%
GATCGACATGGTGAAAGCGG+AGG + chr1_4:1269904-1269923 None:intergenic 55.0%
! GCTTGTTGCGGAGATCGACA+TGG + chr1_4:1269916-1269935 None:intergenic 55.0%
GACGCTGTGATCCACTTTGG+TGG - chr1_4:1269971-1269990 Msa0142380:three_prime_UTR 55.0%
CGGCTTTCAGACCACCAAAG+TGG + chr1_4:1269985-1270004 None:intergenic 55.0%
! CTTTGGTGGTCTGAAAGCCG+TGG - chr1_4:1269985-1270004 Msa0142380:exon 55.0%
CTCTGCGACACTTTCTCCCA+CGG + chr1_4:1270005-1270024 None:intergenic 55.0%
AGGTGGAAGTCCTCAACGCA+GGG + chr1_4:1270154-1270173 None:intergenic 55.0%
AAAAGGCAGAGCCAGAGTGG+AGG - chr1_4:1270309-1270328 Msa0142380:intron 55.0%
GCACATGAGAGCGGTGAGAT+TGG - chr1_4:1270365-1270384 Msa0142380:intron 55.0%
TCCCACCAAAGATGGCACTG+CGG - chr1_4:1270484-1270503 Msa0142380:intron 55.0%
ACCGCAGTGCCATCTTTGGT+GGG + chr1_4:1270488-1270507 None:intergenic 55.0%
ACTCACCGCAGTGCCATCTT+TGG + chr1_4:1270492-1270511 None:intergenic 55.0%
CAGCAATGTGACCATCTGCC+AGG + chr1_4:1270619-1270638 None:intergenic 55.0%
TACAACTTGGGAACTGGCCG+CGG - chr1_4:1270766-1270785 Msa0142380:CDS 55.0%
AAAATGTGTCCGAGGAGGCC+CGG - chr1_4:1270958-1270977 Msa0142380:intron 55.0%
TTCATTGGGAGGAAGGGAGG+AGG - chr1_4:1271056-1271075 Msa0142380:CDS 55.0%
TCATTGGGAGGAAGGGAGGA+GGG - chr1_4:1271057-1271076 Msa0142380:CDS 55.0%
AGCTCAAGCTGGTATCCCCA+TGG + chr1_4:1271206-1271225 None:intergenic 55.0%
TGGGGATACCAGCTTGAGCT+TGG - chr1_4:1271206-1271225 Msa0142380:CDS 55.0%
GGGGATACCAGCTTGAGCTT+GGG - chr1_4:1271207-1271226 Msa0142380:CDS 55.0%
TCCCAAACCCAAGCTCAAGC+TGG + chr1_4:1271217-1271236 None:intergenic 55.0%
GAGTGGGCAATACCAATCGC+CGG - chr1_4:1269709-1269728 Msa0142380:three_prime_UTR 55.0%
GGCAATACCAATCGCCGGAA+AGG - chr1_4:1269714-1269733 Msa0142380:three_prime_UTR 55.0%
!! GATAATGGTAACGGGTGGGG+CGG - chr1_4:1269742-1269761 Msa0142380:three_prime_UTR 55.0%
!! ATAATGGTAACGGGTGGGGC+GGG - chr1_4:1269743-1269762 Msa0142380:three_prime_UTR 55.0%
CCTGTGGACAGCTTCCATGA+CGG + chr1_4:1269846-1269865 None:intergenic 55.0%
CGTCATGGAAGCTGTCCACA+GGG - chr1_4:1269844-1269863 Msa0142380:three_prime_UTR 55.0%
TGTCCACAGGGTTCGCCATT+TGG - chr1_4:1269856-1269875 Msa0142380:three_prime_UTR 55.0%
CAACCAAATGGCGAACCCTG+TGG + chr1_4:1269862-1269881 None:intergenic 55.0%
CACAGGGTTCGCCATTTGGT+TGG - chr1_4:1269860-1269879 Msa0142380:three_prime_UTR 55.0%
GATCGACATGGTGAAAGCGG+AGG + chr1_4:1269904-1269923 None:intergenic 55.0%
! GCTTGTTGCGGAGATCGACA+TGG + chr1_4:1269916-1269935 None:intergenic 55.0%
GACGCTGTGATCCACTTTGG+TGG - chr1_4:1269971-1269990 Msa0142380:three_prime_UTR 55.0%
CGGCTTTCAGACCACCAAAG+TGG + chr1_4:1269985-1270004 None:intergenic 55.0%
! CTTTGGTGGTCTGAAAGCCG+TGG - chr1_4:1269985-1270004 Msa0142380:exon 55.0%
CTCTGCGACACTTTCTCCCA+CGG + chr1_4:1270005-1270024 None:intergenic 55.0%
AGGTGGAAGTCCTCAACGCA+GGG + chr1_4:1270154-1270173 None:intergenic 55.0%
AAAAGGCAGAGCCAGAGTGG+AGG - chr1_4:1270309-1270328 Msa0142380:intron 55.0%
GCACATGAGAGCGGTGAGAT+TGG - chr1_4:1270365-1270384 Msa0142380:intron 55.0%
TCCCACCAAAGATGGCACTG+CGG - chr1_4:1270484-1270503 Msa0142380:intron 55.0%
ACCGCAGTGCCATCTTTGGT+GGG + chr1_4:1270488-1270507 None:intergenic 55.0%
ACTCACCGCAGTGCCATCTT+TGG + chr1_4:1270492-1270511 None:intergenic 55.0%
CAGCAATGTGACCATCTGCC+AGG + chr1_4:1270619-1270638 None:intergenic 55.0%
TACAACTTGGGAACTGGCCG+CGG - chr1_4:1270766-1270785 Msa0142380:CDS 55.0%
AAAATGTGTCCGAGGAGGCC+CGG - chr1_4:1270958-1270977 Msa0142380:intron 55.0%
TTCATTGGGAGGAAGGGAGG+AGG - chr1_4:1271056-1271075 Msa0142380:CDS 55.0%
TCATTGGGAGGAAGGGAGGA+GGG - chr1_4:1271057-1271076 Msa0142380:CDS 55.0%
AGCTCAAGCTGGTATCCCCA+TGG + chr1_4:1271206-1271225 None:intergenic 55.0%
TGGGGATACCAGCTTGAGCT+TGG - chr1_4:1271206-1271225 Msa0142380:CDS 55.0%
GGGGATACCAGCTTGAGCTT+GGG - chr1_4:1271207-1271226 Msa0142380:CDS 55.0%
TCCCAAACCCAAGCTCAAGC+TGG + chr1_4:1271217-1271236 None:intergenic 55.0%
!! TAATGGTAACGGGTGGGGCG+GGG - chr1_4:1269744-1269763 Msa0142380:three_prime_UTR 60.0%
CCGTCATGGAAGCTGTCCAC+AGG - chr1_4:1269843-1269862 Msa0142380:three_prime_UTR 60.0%
CAGGTGGAAGTCCTCAACGC+AGG + chr1_4:1270155-1270174 None:intergenic 60.0%
CACCGCAGTGCCATCTTTGG+TGG + chr1_4:1270489-1270508 None:intergenic 60.0%
GCGGCCAGTTCCCAAGTTGT+AGG + chr1_4:1270767-1270786 None:intergenic 60.0%
!! TAATGGTAACGGGTGGGGCG+GGG - chr1_4:1269744-1269763 Msa0142380:three_prime_UTR 60.0%
CCGTCATGGAAGCTGTCCAC+AGG - chr1_4:1269843-1269862 Msa0142380:three_prime_UTR 60.0%
CAGGTGGAAGTCCTCAACGC+AGG + chr1_4:1270155-1270174 None:intergenic 60.0%
CACCGCAGTGCCATCTTTGG+TGG + chr1_4:1270489-1270508 None:intergenic 60.0%
GCGGCCAGTTCCCAAGTTGT+AGG + chr1_4:1270767-1270786 None:intergenic 60.0%
CCGCTCTCATGTGCCCCAAC+CGG + chr1_4:1270359-1270378 None:intergenic 65.0%
CCGGTTGGGGCACATGAGAG+CGG - chr1_4:1270356-1270375 Msa0142380:intron 65.0%
GTAGCATCTCCGGGCCTCCT+CGG + chr1_4:1270970-1270989 None:intergenic 65.0%
CCGCTCTCATGTGCCCCAAC+CGG + chr1_4:1270359-1270378 None:intergenic 65.0%
CCGGTTGGGGCACATGAGAG+CGG - chr1_4:1270356-1270375 Msa0142380:intron 65.0%
GTAGCATCTCCGGGCCTCCT+CGG + chr1_4:1270970-1270989 None:intergenic 65.0%
ACGGGTGGGGCGGGGTTCAT+TGG - chr1_4:1269752-1269771 Msa0142380:three_prime_UTR 70.0%
ACGGGTGGGGCGGGGTTCAT+TGG - chr1_4:1269752-1269771 Msa0142380:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 1269704 1271537 1269704 ID=Msa0142380;Name=Msa0142380
chr1_4 mRNA 1269704 1271537 1269704 ID=Msa0142380-mRNA-1;Parent=Msa0142380;Name=Msa0142380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.83|1|1|1|6|293|361
chr1_4 exon 1269704 1270096 1269704 ID=Msa0142380-mRNA-1:exon:418;Parent=Msa0142380-mRNA-1
chr1_4 exon 1270204 1270295 1270204 ID=Msa0142380-mRNA-1:exon:417;Parent=Msa0142380-mRNA-1
chr1_4 exon 1270404 1270486 1270404 ID=Msa0142380-mRNA-1:exon:416;Parent=Msa0142380-mRNA-1
chr1_4 exon 1270570 1270651 1270570 ID=Msa0142380-mRNA-1:exon:415;Parent=Msa0142380-mRNA-1
chr1_4 exon 1270736 1270963 1270736 ID=Msa0142380-mRNA-1:exon:414;Parent=Msa0142380-mRNA-1
chr1_4 exon 1271037 1271537 1271037 ID=Msa0142380-mRNA-1:exon:413;Parent=Msa0142380-mRNA-1
chr1_4 CDS 1271037 1271537 1271037 ID=Msa0142380-mRNA-1:cds;Parent=Msa0142380-mRNA-1
chr1_4 CDS 1270736 1270963 1270736 ID=Msa0142380-mRNA-1:cds;Parent=Msa0142380-mRNA-1
chr1_4 CDS 1270570 1270651 1270570 ID=Msa0142380-mRNA-1:cds;Parent=Msa0142380-mRNA-1
chr1_4 CDS 1270404 1270486 1270404 ID=Msa0142380-mRNA-1:cds;Parent=Msa0142380-mRNA-1
chr1_4 CDS 1270204 1270295 1270204 ID=Msa0142380-mRNA-1:cds;Parent=Msa0142380-mRNA-1
chr1_4 CDS 1269997 1270096 1269997 ID=Msa0142380-mRNA-1:cds;Parent=Msa0142380-mRNA-1
chr1_4 three_prime_UTR 1269704 1269996 1269704 ID=Msa0142380-mRNA-1:three_prime_utr;Parent=Msa0142380-mRNA-1
Gene Sequence

>Msa0142380

ATGGTGAGTGGGCAATACCAATCGCCGGAAAGGAAAACGATAATGGTAACGGGTGGGGCGGGGTTCATTGGATCACACACGGTCGTTCAGCTTCTAAAACAGGGCTATACAGTTTCCATTATCGACAATCTCTACAATTCCGTCATGGAAGCTGTCCACAGGGTTCGCCATTTGGTTGGTCCTCAACTTTCCAACTACCTCCGCTTTCACCATGTCGATCTCCGCAACAAGCAAGAGTTGGAGATGATCTTCTCTAAAACCAAGTTTGACGCTGTGATCCACTTTGGTGGTCTGAAAGCCGTGGGAGAAAGTGTCGCAGAGCCACTCAAATATTTTGATCACAACTTGGTTGGCACTACCAATCTTTTTCAAGTGATGACTAAATTTCAGTGTAAAAAGATGGTATTGTCATCCTCTGCAGCAGTTTATGGTCAACCAGATGAAATTCCCTGCGTTGAGGACTTCCACCTGCAAGCCATGAATCCTTATGGAAGAACCAAGCTTTTCGCGGAAGAGATTGCACGAGATATTCAAAAGGCAGAGCCAGAGTGGAGGATAATATTGCTGAGATACTTCAATCCGGTTGGGGCACATGAGAGCGGTGAGATTGGCGAAGATCCAAGGGGCATACCCAATAATCTGATGCCTTACTTAACCCAAGTAGCAGTTGGAAGATTGCCCGAGCTCAACGTTTATGGTCATGATTATCCCACCAAAGATGGCACTGCGATACGGGACTTTATCCATGTAATGGACCTGGCAGATGGTCACATTGCTGCGTTGCGAAAGCTTTTTGCGACAGACAAAATCGGTTGTAGTGCCTACAACTTGGGAACTGGCCGCGGTACATCAGTGCTTCAAATGGTTGCTGCATTTGAAAAGGCTTCTGGCAAGAAAATTCCTATTAAAATGTGTCCGAGGAGGCCCGGAGATGCTACTGCTATCTATGCATCTACGCATAAGGCTGAAAATGAACTTGGTTGGAAGGCAAAATACGGTATAGAGGAGATGTGCAGAGACCAATGGAATTGGGCAAGCAACAATCCATGGGGATACCAGCTTGAGCTTGGGTTTGGGAATCGTTGA
Protein sequence

>Msa0142380

MVSGQYQSPERKTIMVTGGAGFIGSHTVVQLLKQGYTVSIIDNLYNSVMEAVHRVRHLVGPQLSNYLRFHHVDLRNKQELEMIFSKTKFDAVIHFGGLKAVGESVAEPLKYFDHNLVGTTNLFQVMTKFQCKKMVLSSSAAVYGQPDEIPCVEDFHLQAMNPYGRTKLFAEEIARDIQKAEPEWRIILLRYFNPVGAHESGEIGEDPRGIPNNLMPYLTQVAVGRLPELNVYGHDYPTKDGTAIRDFIHVMDLADGHIAALRKLFATDKIGCSAYNLGTGRGTSVLQMVAAFEKASGKKIPIKMCPRRPGDATAIYASTHKAENELGWKAKYGIEEMCRDQWNWASNNPWGYQLELGFGNR*