Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314330 | RYR70357.1 | 52.407 | 540 | 196 | 14 | 2 | 486 | 6 | 539 | 4.90e-152 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314330 | sp|Q8LEE9|FLA12_ARATH | 55.479 | 146 | 63 | 2 | 67 | 211 | 39 | 183 | 3.28e-43 | 156 |
| Msa0314330 | sp|Q8LEE9|FLA12_ARATH | 55.479 | 146 | 63 | 2 | 304 | 448 | 39 | 183 | 3.28e-43 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142380 | Msa0314330 | 0.866020 | 3.869092e-65 | -8.615850e-47 |
| Msa0194000 | Msa0314330 | 0.943919 | 5.035789e-103 | -8.615850e-47 |
| Msa0221820 | Msa0314330 | 0.810238 | 1.273310e-50 | -8.615850e-47 |
| Msa0235870 | Msa0314330 | 0.934443 | 4.008756e-96 | -8.615850e-47 |
| Msa0263440 | Msa0314330 | 0.863417 | 2.526601e-64 | -8.615850e-47 |
| Msa0269380 | Msa0314330 | 0.864708 | 1.001017e-64 | -8.615850e-47 |
| Msa0288900 | Msa0314330 | 0.992441 | 2.626481e-193 | -8.615850e-47 |
| Msa0301030 | Msa0314330 | 0.844244 | 8.523092e-59 | -8.615850e-47 |
| Msa0314220 | Msa0314330 | 0.916636 | 1.403846e-85 | -8.615850e-47 |
| Msa0314330 | Msa0338580 | 0.808843 | 2.537174e-50 | -8.615850e-47 |
| Msa0314330 | Msa0547390 | 0.888958 | 3.719602e-73 | -8.615850e-47 |
| Msa0314330 | Msa0565260 | 0.862299 | 5.593066e-64 | -8.615850e-47 |
| Msa0314330 | Msa0602110 | 0.878759 | 2.165832e-69 | -8.615850e-47 |
| Msa0314330 | Msa0618600 | 0.892636 | 1.322304e-74 | -8.615850e-47 |
| Msa0314330 | Msa0643240 | 0.929077 | 1.164691e-92 | -8.615850e-47 |
| Msa0314330 | Msa0657380 | 0.897379 | 1.488185e-76 | -8.615850e-47 |
| Msa0314330 | Msa0682920 | 0.850558 | 1.571371e-60 | -8.615850e-47 |
| Msa0314330 | Msa0708510 | 0.906197 | 1.918947e-80 | -8.615850e-47 |
| Msa0314330 | Msa0792190 | 0.864937 | 8.484093e-65 | -8.615850e-47 |
| Msa0314330 | Msa1199250 | 0.889660 | 1.985005e-73 | -8.615850e-47 |
| Msa0314330 | Msa1252480 | 0.874174 | 8.299915e-68 | -8.615850e-47 |
| Msa0314330 | Msa1267350 | 0.863279 | 2.788661e-64 | -8.615850e-47 |
| Msa0314330 | Msa1293220 | 0.895763 | 7.037403e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314330 | MtrunA17_Chr2g0284431 | 95.019 | 261 | 12 | 1 | 1 | 260 | 22 | 282 | 1.05e-148 | 427 |
| Msa0314330 | MtrunA17_Chr2g0284431 | 95.652 | 253 | 11 | 0 | 260 | 512 | 45 | 297 | 5.29e-145 | 418 |
| Msa0314330 | MtrunA17_Chr2g0284411 | 96.169 | 261 | 9 | 1 | 1 | 260 | 1 | 261 | 6.14e-145 | 417 |
| Msa0314330 | MtrunA17_Chr2g0284411 | 93.839 | 211 | 13 | 0 | 302 | 512 | 66 | 276 | 1.77e-139 | 403 |
| Msa0314330 | MtrunA17_Chr8g0379611 | 74.157 | 267 | 53 | 5 | 260 | 510 | 23 | 289 | 7.31e-107 | 321 |
| Msa0314330 | MtrunA17_Chr8g0379611 | 76.892 | 251 | 47 | 3 | 19 | 258 | 19 | 269 | 1.90e-106 | 320 |
| Msa0314330 | MtrunA17_Chr4g0029501 | 55.378 | 251 | 100 | 3 | 1 | 239 | 4 | 254 | 3.94e-78 | 246 |
| Msa0314330 | MtrunA17_Chr4g0029501 | 58.667 | 225 | 67 | 4 | 278 | 476 | 30 | 254 | 7.10e-77 | 243 |
| Msa0314330 | MtrunA17_Chr4g0029441 | 57.466 | 221 | 82 | 3 | 287 | 495 | 53 | 273 | 3.43e-76 | 241 |
| Msa0314330 | MtrunA17_Chr4g0029441 | 57.727 | 220 | 81 | 3 | 50 | 257 | 53 | 272 | 2.65e-75 | 239 |
| Msa0314330 | MtrunA17_Chr4g0026611 | 56.048 | 248 | 90 | 5 | 3 | 235 | 8 | 251 | 4.31e-75 | 239 |
| Msa0314330 | MtrunA17_Chr4g0026611 | 58.371 | 221 | 67 | 4 | 276 | 472 | 32 | 251 | 6.34e-75 | 238 |
| Msa0314330 | MtrunA17_Chr2g0326421 | 54.400 | 250 | 103 | 6 | 271 | 513 | 39 | 284 | 6.86e-73 | 233 |
| Msa0314330 | MtrunA17_Chr2g0326421 | 51.838 | 272 | 118 | 8 | 1 | 263 | 1 | 268 | 4.98e-69 | 223 |
| Msa0314330 | MtrunA17_Chr4g0029431 | 55.769 | 260 | 106 | 5 | 260 | 513 | 24 | 280 | 5.75e-69 | 222 |
| Msa0314330 | MtrunA17_Chr4g0029431 | 60.825 | 194 | 73 | 3 | 22 | 214 | 23 | 214 | 6.24e-67 | 217 |
| Msa0314330 | MtrunA17_Chr2g0326411 | 48.120 | 266 | 119 | 4 | 2 | 253 | 6 | 266 | 1.60e-68 | 222 |
| Msa0314330 | MtrunA17_Chr2g0326411 | 48.413 | 252 | 111 | 4 | 253 | 490 | 20 | 266 | 2.31e-66 | 216 |
| Msa0314330 | MtrunA17_Chr8g0379621 | 49.077 | 271 | 107 | 11 | 1 | 241 | 5 | 274 | 4.30e-59 | 198 |
| Msa0314330 | MtrunA17_Chr8g0379621 | 46.038 | 265 | 118 | 8 | 272 | 512 | 53 | 316 | 3.70e-57 | 192 |
| Msa0314330 | MtrunA17_Chr2g0284451 | 47.529 | 263 | 101 | 9 | 5 | 242 | 7 | 257 | 2.16e-58 | 195 |
| Msa0314330 | MtrunA17_Chr2g0284451 | 48.536 | 239 | 91 | 7 | 261 | 479 | 31 | 257 | 3.06e-56 | 189 |
| Msa0314330 | MtrunA17_Chr8g0379631 | 47.601 | 271 | 111 | 9 | 1 | 241 | 5 | 274 | 3.70e-57 | 192 |
| Msa0314330 | MtrunA17_Chr8g0379631 | 47.471 | 257 | 110 | 8 | 272 | 504 | 53 | 308 | 4.29e-57 | 192 |
| Msa0314330 | MtrunA17_Chr4g0029331 | 50.472 | 212 | 75 | 5 | 7 | 218 | 31 | 212 | 4.33e-55 | 186 |
| Msa0314330 | MtrunA17_Chr4g0029331 | 53.191 | 188 | 67 | 3 | 268 | 455 | 46 | 212 | 3.47e-54 | 183 |
| Msa0314330 | MtrunA17_Chr2g0326431 | 58.784 | 148 | 60 | 1 | 67 | 214 | 41 | 187 | 6.49e-51 | 174 |
| Msa0314330 | MtrunA17_Chr2g0326431 | 58.784 | 148 | 60 | 1 | 304 | 451 | 41 | 187 | 6.49e-51 | 174 |
| Msa0314330 | MtrunA17_Chr7g0263981 | 44.886 | 176 | 79 | 3 | 38 | 212 | 27 | 185 | 8.06e-39 | 142 |
| Msa0314330 | MtrunA17_Chr7g0263981 | 44.886 | 176 | 79 | 3 | 275 | 449 | 27 | 185 | 8.75e-39 | 142 |
| Msa0314330 | MtrunA17_Chr2g0325021 | 42.308 | 156 | 89 | 1 | 56 | 211 | 27 | 181 | 3.68e-24 | 101 |
| Msa0314330 | MtrunA17_Chr2g0325021 | 42.308 | 156 | 89 | 1 | 293 | 448 | 27 | 181 | 3.68e-24 | 101 |
| Msa0314330 | MtrunA17_Chr5g0448001 | 32.558 | 172 | 107 | 4 | 304 | 470 | 48 | 215 | 6.20e-17 | 80.9 |
| Msa0314330 | MtrunA17_Chr5g0448001 | 32.584 | 178 | 109 | 5 | 67 | 239 | 48 | 219 | 1.56e-16 | 79.7 |
| Msa0314330 | MtrunA17_Chr5g0448211 | 26.459 | 257 | 148 | 8 | 284 | 511 | 177 | 421 | 1.30e-11 | 66.6 |
| Msa0314330 | MtrunA17_Chr5g0448211 | 31.098 | 164 | 99 | 4 | 67 | 224 | 196 | 351 | 2.29e-11 | 65.9 |
| Msa0314330 | MtrunA17_Chr7g0246041 | 29.885 | 174 | 106 | 4 | 300 | 467 | 180 | 343 | 1.88e-11 | 66.2 |
| Msa0314330 | MtrunA17_Chr7g0246041 | 29.310 | 174 | 107 | 4 | 63 | 230 | 180 | 343 | 4.90e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314330 | AT5G60490.1 | 55.479 | 146 | 63 | 2 | 67 | 211 | 39 | 183 | 3.34e-44 | 156 |
| Msa0314330 | AT5G60490.1 | 55.479 | 146 | 63 | 2 | 304 | 448 | 39 | 183 | 3.34e-44 | 156 |
| Msa0314330 | AT5G03170.1 | 46.667 | 180 | 94 | 2 | 293 | 471 | 25 | 203 | 9.59e-44 | 155 |
| Msa0314330 | AT5G03170.1 | 48.538 | 171 | 86 | 2 | 56 | 224 | 25 | 195 | 3.25e-43 | 154 |
| Msa0314330 | AT5G44130.1 | 41.026 | 195 | 108 | 4 | 304 | 492 | 36 | 229 | 8.25e-33 | 125 |
| Msa0314330 | AT5G44130.1 | 41.026 | 195 | 108 | 4 | 67 | 255 | 36 | 229 | 1.01e-32 | 125 |
| Msa0314330 | AT1G03870.1 | 38.710 | 186 | 107 | 4 | 304 | 488 | 39 | 218 | 4.56e-27 | 110 |
| Msa0314330 | AT1G03870.1 | 38.710 | 186 | 107 | 4 | 67 | 251 | 39 | 218 | 7.83e-27 | 109 |
| Msa0314330 | AT2G20520.1 | 37.156 | 218 | 119 | 7 | 284 | 488 | 17 | 229 | 2.04e-25 | 105 |
| Msa0314330 | AT2G20520.1 | 38.503 | 187 | 107 | 5 | 49 | 231 | 19 | 201 | 3.49e-25 | 104 |
| Msa0314330 | AT3G46550.1 | 29.167 | 168 | 107 | 6 | 64 | 222 | 204 | 368 | 3.36e-12 | 68.9 |
| Msa0314330 | AT3G46550.1 | 29.167 | 168 | 107 | 6 | 301 | 459 | 204 | 368 | 3.36e-12 | 68.9 |
| Msa0314330 | AT4G12730.1 | 22.449 | 392 | 221 | 10 | 63 | 453 | 24 | 333 | 6.80e-12 | 67.8 |
| Msa0314330 | AT3G60900.1 | 27.473 | 182 | 126 | 3 | 50 | 230 | 173 | 349 | 4.85e-11 | 65.1 |
| Msa0314330 | AT3G60900.1 | 27.473 | 182 | 126 | 3 | 287 | 467 | 173 | 349 | 5.79e-11 | 65.1 |
Find 129 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTGGAGCTGGCGTGGC+AGG | 0.213569 | 2_4:+10050109 | None:intergenic |
| CATATGAATGTGACTGCTTA+TGG | 0.274154 | 2_4:-10046799 | Msa0314330:CDS |
| CATATGAATGTGACTGCTTA+TGG | 0.274154 | 2_4:-10049713 | Msa0314330:CDS |
| TCACTAGCTGTGAGTTAATT+TGG | 0.274822 | 2_4:+10047028 | None:intergenic |
| TTGCTGGAGCTGGCGTGGCA+GGG | 0.274945 | 2_4:+10050110 | None:intergenic |
| TCACCAGCTGTGAGTTAATT+TGG | 0.285640 | 2_4:+10049942 | None:intergenic |
| CTTGCCAGTGATAGCCCTTC+TGG | 0.294408 | 2_4:-10049740 | Msa0314330:CDS |
| GCCGGTGCTGTTGCTGGAGC+TGG | 0.297976 | 2_4:+10050100 | None:intergenic |
| CACCTTATCAACATGGTATA+TGG | 0.300111 | 2_4:+10049616 | None:intergenic |
| TCCTTGACGGTTAATCAAAT+TGG | 0.306881 | 2_4:+10049457 | None:intergenic |
| TGGTTGCTGCAGCAACAAAA+AGG | 0.320201 | 2_4:+10046506 | None:intergenic |
| GTTGCAGGAGCTGGTGTGGC+GGG | 0.333586 | 2_4:+10047195 | None:intergenic |
| TGATAAGGTGCTTATTCCTT+TGG | 0.335490 | 2_4:-10046689 | Msa0314330:CDS |
| GGAGCTGGCGTGGCAGGGGC+AGG | 0.344057 | 2_4:+10050115 | None:intergenic |
| CTTGCCAGTGATAGCCCTTC+TGG | 0.345918 | 2_4:-10046826 | Msa0314330:CDS |
| AACAATGTGAATATATCAAC+TGG | 0.346164 | 2_4:-10046775 | Msa0314330:CDS |
| AACAATGTGAATATATCAAC+TGG | 0.346164 | 2_4:-10049689 | Msa0314330:CDS |
| GGTTTGGTTGGTGCTGTTGC+AGG | 0.346274 | 2_4:+10047180 | None:intergenic |
| CCCTCATCCGATTCATCTTC+CGG | 0.349916 | 2_4:-10050046 | Msa0314330:CDS |
| TGATAAGGTGCTTATCCCTT+TGG | 0.356772 | 2_4:-10049603 | Msa0314330:CDS |
| CCTGTGAGTGTAGCATTAAC+AGG | 0.382985 | 2_4:+10046751 | None:intergenic |
| CCTGTGAGTGTAGCATTAAC+AGG | 0.382985 | 2_4:+10049665 | None:intergenic |
| GTTGGTGCTGTTGCAGGAGC+TGG | 0.388243 | 2_4:+10047186 | None:intergenic |
| TGAGGTAATGAGGGGACTAA+TGG | 0.391231 | 2_4:+10050073 | None:intergenic |
| TTAGGCGCCTTTGCCGTAGA+AGG | 0.397051 | 2_4:+10049548 | None:intergenic |
| CCCTCATCTGATTCTTCGTC+AGG | 0.398920 | 2_4:-10047132 | Msa0314330:CDS |
| TTCATCTGAAGATGGTGATC+AGG | 0.406962 | 2_4:-10049510 | Msa0314330:CDS |
| TAATGAAGGGACTAATGGTT+TGG | 0.416064 | 2_4:+10047164 | None:intergenic |
| GAACTATCCTTATCAGCTTT+AGG | 0.420123 | 2_4:+10046616 | None:intergenic |
| GGAGCAGGAGCTAGAGCCTT+AGG | 0.421990 | 2_4:+10046655 | None:intergenic |
| TGCGAAAAGGCACCATCATC+TGG | 0.427934 | 2_4:+10049887 | None:intergenic |
| TTTGAGCTCGAGACGTAAAC+AGG | 0.428217 | 2_4:+10046880 | None:intergenic |
| TTTGAGCTCGAGACGTAAAC+AGG | 0.428217 | 2_4:+10049794 | None:intergenic |
| TGAGGTAATGAAGGGACTAA+TGG | 0.431517 | 2_4:+10047159 | None:intergenic |
| GGAGCAGGAGCTAGAGCCTT+AGG | 0.432560 | 2_4:+10049569 | None:intergenic |
| TTTGGATTTCTCTAAGCCTA+AGG | 0.436103 | 2_4:-10046671 | Msa0314330:CDS |
| TGCTGGAGCTGGCGTGGCAG+GGG | 0.436414 | 2_4:+10050111 | None:intergenic |
| CTTTCTGTTGGCGTTCGCCA+AGG | 0.437630 | 2_4:+10046926 | None:intergenic |
| GAAGTATCCGGCTTTGAGTT+GGG | 0.438548 | 2_4:+10046954 | None:intergenic |
| TCCTGCTCCTGCTACGGCGA+AGG | 0.440885 | 2_4:-10046641 | Msa0314330:CDS |
| TTAGGCGCCTTCGCCGTAGC+AGG | 0.446841 | 2_4:+10046634 | None:intergenic |
| ACTGTATCAGTTCTTTCTGT+TGG | 0.447264 | 2_4:+10046914 | None:intergenic |
| ACTGTATCAGTTCTTTCTGT+TGG | 0.447264 | 2_4:+10049828 | None:intergenic |
| TGGGAAAAGGCACCATCATC+AGG | 0.449115 | 2_4:+10046973 | None:intergenic |
| GCGGCTTTAGGTGCTGCAGC+AGG | 0.450878 | 2_4:+10050145 | None:intergenic |
| GAACTATCCTTACCAGCTTT+AGG | 0.451167 | 2_4:+10049530 | None:intergenic |
| GCCAGCTCCAGCAACAGCAC+CGG | 0.451213 | 2_4:-10050101 | Msa0314330:CDS |
| TCCGGCTTTGAGTTGGGAAA+AGG | 0.452280 | 2_4:+10046960 | None:intergenic |
| GAGACAACTAAAGCTACTTC+TGG | 0.452965 | 2_4:-10046571 | Msa0314330:CDS |
| GAGACAACTAAAGCTACTTC+TGG | 0.452965 | 2_4:-10049485 | Msa0314330:CDS |
| GCCTTCGCCGTAGCAGGAGC+AGG | 0.456420 | 2_4:+10046640 | None:intergenic |
| TGCTATATATCATGTTGATA+AGG | 0.467326 | 2_4:-10046704 | Msa0314330:CDS |
| CCTGTTAATGCTACACTCAC+AGG | 0.472842 | 2_4:-10046751 | Msa0314330:CDS |
| CCTGTTAATGCTACACTCAC+AGG | 0.472842 | 2_4:-10049665 | Msa0314330:CDS |
| ACCGAGGGAATTGAAGTATC+CGG | 0.475254 | 2_4:+10049856 | None:intergenic |
| GAGGGTGATTGAGGTAATGA+AGG | 0.477096 | 2_4:+10047150 | None:intergenic |
| ACCATCCTTGCACCAGATGA+TGG | 0.477858 | 2_4:-10049899 | Msa0314330:CDS |
| TTTGGACTTCTCTAAGCCTA+AGG | 0.478601 | 2_4:-10049585 | Msa0314330:CDS |
| TGCAGGAGCTGGTGTGGCGG+GGG | 0.481125 | 2_4:+10047197 | None:intergenic |
| GCCAAGGGAGTTGAAGTATC+CGG | 0.481250 | 2_4:+10046942 | None:intergenic |
| TGCCATATACCATGTTGATA+AGG | 0.485768 | 2_4:-10049618 | Msa0314330:CDS |
| GAATCGGATGAGGGTGATTG+AGG | 0.487257 | 2_4:+10050055 | None:intergenic |
| TTTCTGTTGGCGTTCGCCAA+GGG | 0.488696 | 2_4:+10046927 | None:intergenic |
| TGAAGTATCCGGCTTTGAGT+TGG | 0.493632 | 2_4:+10046953 | None:intergenic |
| ACCATCCTTGCACCTGATGA+TGG | 0.495059 | 2_4:-10046985 | Msa0314330:CDS |
| GCCTTTGCCGTAGAAGGAGC+AGG | 0.498241 | 2_4:+10049554 | None:intergenic |
| TTGCAGGAGCTGGTGTGGCG+GGG | 0.499735 | 2_4:+10047196 | None:intergenic |
| GGGGCTTTAGGTGCTGCAGC+AGG | 0.504395 | 2_4:+10047231 | None:intergenic |
| GCCGGATACTTCAACTCCCT+TGG | 0.504856 | 2_4:-10046943 | Msa0314330:CDS |
| TGCTGTTGCTGGAGCTGGCG+TGG | 0.504987 | 2_4:+10050105 | None:intergenic |
| TGTTGCAGGAGCTGGTGTGG+CGG | 0.506582 | 2_4:+10047194 | None:intergenic |
| ACGGCAAAGGCGCCTAAAGC+TGG | 0.514430 | 2_4:-10049542 | Msa0314330:CDS |
| TCCTGCTCCTTCTACGGCAA+AGG | 0.516405 | 2_4:-10049555 | Msa0314330:CDS |
| GTCTTGACCGGAAGATGAAT+CGG | 0.516491 | 2_4:+10050039 | None:intergenic |
| TCCGGCTTTGAGCTGCGAAA+AGG | 0.516768 | 2_4:+10049874 | None:intergenic |
| GAGGGTGATTGAGGTAATGA+GGG | 0.517617 | 2_4:+10050064 | None:intergenic |
| TTGACGGTTAATCAAATTGG+TGG | 0.520132 | 2_4:+10049460 | None:intergenic |
| ACCATCATCTGGTGCAAGGA+TGG | 0.521744 | 2_4:+10049898 | None:intergenic |
| TCACTGGCAAGGGTCAGCAC+CGG | 0.522281 | 2_4:+10049752 | None:intergenic |
| TCATCTGAAGATGGTGATCA+AGG | 0.523011 | 2_4:-10046595 | Msa0314330:CDS |
| GAATCAGATGAGGGTGATTG+AGG | 0.524183 | 2_4:+10047141 | None:intergenic |
| ACACAAGTAATGTGCTTTGA+AGG | 0.524778 | 2_4:+10046530 | None:intergenic |
| CACTGGCAAGGGTCAGCACC+GGG | 0.525133 | 2_4:+10049753 | None:intergenic |
| ACCGGAAGATGAATCGGATG+AGG | 0.537067 | 2_4:+10050045 | None:intergenic |
| TTTCTGTTGGCGTTCACCGA+GGG | 0.537196 | 2_4:+10049841 | None:intergenic |
| TCACTGGCAAGCGTCAGCAC+AGG | 0.539371 | 2_4:+10046838 | None:intergenic |
| TGAGGGTGATTGAGGTAATG+AGG | 0.542427 | 2_4:+10050063 | None:intergenic |
| GAAGGCGCCTAAAGCTGATA+AGG | 0.542783 | 2_4:-10046623 | Msa0314330:CDS |
| GCCGGATACTTCAATTCCCT+CGG | 0.543294 | 2_4:-10049857 | Msa0314330:CDS |
| TCTAGCTCCTGCTCCTGCTA+CGG | 0.543999 | 2_4:-10046647 | Msa0314330:CDS |
| TGCTGCAGCACCTAAAGCCC+CGG | 0.546224 | 2_4:-10047229 | Msa0314330:CDS |
| TCATCTGAAGATGGTGATCA+GGG | 0.549789 | 2_4:-10049509 | Msa0314330:CDS |
| TCTAGCTCCTGCTCCTTCTA+CGG | 0.551944 | 2_4:-10049561 | Msa0314330:CDS |
| ACCATCATCAGGTGCAAGGA+TGG | 0.555167 | 2_4:+10046984 | None:intergenic |
| TTAGGCTTAGAGAAGTCCAA+AGG | 0.564111 | 2_4:+10049587 | None:intergenic |
| CAGAAGGGCTATCACTGGCA+AGG | 0.567443 | 2_4:+10049741 | None:intergenic |
| AAAGGCGCCTAAAGCTGGTA+AGG | 0.571254 | 2_4:-10049537 | Msa0314330:CDS |
| AAGGATAGTTCATCTGAAGA+TGG | 0.575616 | 2_4:-10046604 | Msa0314330:CDS |
| AAGGATAGTTCATCTGAAGA+TGG | 0.575616 | 2_4:-10049518 | Msa0314330:CDS |
| GAAGGGACTAATGGTTTGGT+TGG | 0.579189 | 2_4:+10047168 | None:intergenic |
| CAACCAAATTAACTCACAGC+TGG | 0.580266 | 2_4:-10049945 | Msa0314330:CDS |
| TGCTGTTGCAGGAGCTGGTG+TGG | 0.586632 | 2_4:+10047191 | None:intergenic |
| CTTTCTGTTGGCGTTCACCG+AGG | 0.586877 | 2_4:+10049840 | None:intergenic |
| AGGGTGATTGAGGTAATGAA+GGG | 0.591055 | 2_4:+10047151 | None:intergenic |
| CTGTTAATGCTACACTCACA+GGG | 0.594530 | 2_4:-10046750 | Msa0314330:CDS |
| CTGTTAATGCTACACTCACA+GGG | 0.594530 | 2_4:-10049664 | Msa0314330:CDS |
| AATTTGGTTGATGATTTGTG+TGG | 0.598675 | 2_4:+10047044 | None:intergenic |
| AATTTGGTTGATGATTTGTG+TGG | 0.598675 | 2_4:+10049958 | None:intergenic |
| ATAACCAGAAGGGCTATCAC+TGG | 0.599004 | 2_4:+10046822 | None:intergenic |
| ATAACCAGAAGGGCTATCAC+TGG | 0.599004 | 2_4:+10049736 | None:intergenic |
| CACTGGCAAGCGTCAGCACA+GGG | 0.603008 | 2_4:+10046839 | None:intergenic |
| ACCTGACGAAGAATCAGATG+AGG | 0.603278 | 2_4:+10047131 | None:intergenic |
| TAGGCTTAGAGAAGTCCAAA+GGG | 0.607637 | 2_4:+10049588 | None:intergenic |
| CCGGAAGATGAATCGGATGA+GGG | 0.610068 | 2_4:+10050046 | None:intergenic |
| AGAAGGGCTATCACTGGCAA+GGG | 0.612516 | 2_4:+10049742 | None:intergenic |
| AGGCACCATCATCTGGTGCA+AGG | 0.613181 | 2_4:+10049894 | None:intergenic |
| AGGCACCATCATCAGGTGCA+AGG | 0.615621 | 2_4:+10046980 | None:intergenic |
| TGGTCTTCATCAACTGAACA+TGG | 0.637892 | 2_4:+10046486 | None:intergenic |
| CATTCATATGATAACCAGAA+GGG | 0.647322 | 2_4:+10046812 | None:intergenic |
| CATTCATATGATAACCAGAA+GGG | 0.647322 | 2_4:+10049726 | None:intergenic |
| AGCAGGTGATTGAGCTGTAG+TGG | 0.649922 | 2_4:+10050162 | None:intergenic |
| TTAGGCTTAGAGAAATCCAA+AGG | 0.655336 | 2_4:+10046673 | None:intergenic |
| AGGGTGATTGAGGTAATGAG+GGG | 0.663044 | 2_4:+10050065 | None:intergenic |
| CCTGACGAAGAATCAGATGA+GGG | 0.664754 | 2_4:+10047132 | None:intergenic |
| ACATTCATATGATAACCAGA+AGG | 0.665867 | 2_4:+10046811 | None:intergenic |
| ACATTCATATGATAACCAGA+AGG | 0.665867 | 2_4:+10049725 | None:intergenic |
| GGATAAGCACCTTATCAACA+TGG | 0.671634 | 2_4:+10049609 | None:intergenic |
| ACAATGTGAATATATCAACT+GGG | 0.700774 | 2_4:-10046774 | Msa0314330:CDS |
| ACAATGTGAATATATCAACT+GGG | 0.700774 | 2_4:-10049688 | Msa0314330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATTTCAATGTTTA+TGG | + | chr2_4:10048331-10048350 | None:intergenic | 10.0% |
| !!! | ATCAAATTTTACTTTGAATA+TGG | - | chr2_4:10047782-10047801 | Msa0314330:intron | 15.0% |
| !!! | AGCAAAAAAACATATTGTTT+TGG | - | chr2_4:10047492-10047511 | Msa0314330:intron | 20.0% |
| !!! | GTTTTCTGATAAATGTAAAA+CGG | - | chr2_4:10048224-10048243 | Msa0314330:intron | 20.0% |
| !!! | TGTTCTTAACTTATTTTATC+AGG | - | chr2_4:10048591-10048610 | Msa0314330:intron | 20.0% |
| !! | TAGGGTGATAAATTATAATT+TGG | - | chr2_4:10048969-10048988 | Msa0314330:intron | 20.0% |
| !! | ATATGATATGATGAAAAAGT+TGG | - | chr2_4:10049165-10049184 | Msa0314330:intron | 20.0% |
| !! | ACTACTTAATAGTACTTAAT+TGG | + | chr2_4:10049288-10049307 | None:intergenic | 20.0% |
| !! | TTTGGAAAGATATAAATGAT+AGG | + | chr2_4:10049364-10049383 | None:intergenic | 20.0% |
| !!! | TGAATGATTTAGCTTTTCTT+AGG | + | chr2_4:10046710-10046729 | None:intergenic | 25.0% |
| ! | AACAATGTGAATATATCAAC+TGG | - | chr2_4:10047023-10047042 | Msa0314330:CDS | 25.0% |
| ! | ACAATGTGAATATATCAACT+GGG | - | chr2_4:10047024-10047043 | Msa0314330:CDS | 25.0% |
| !!! | ATGTTTGTGTCTTTTTTTGT+TGG | - | chr2_4:10047281-10047300 | Msa0314330:intron | 25.0% |
| !!! | GTTTTGTTTTGTATTGTCAT+GGG | - | chr2_4:10047400-10047419 | Msa0314330:intron | 25.0% |
| !! | GCTTTTACATGAATAAAATC+AGG | + | chr2_4:10047475-10047494 | None:intergenic | 25.0% |
| ! | AATCTTGTTAGAAAGTAAAC+TGG | + | chr2_4:10047749-10047768 | None:intergenic | 25.0% |
| !!! | TTCTCTCTAAGACAAATAAA+AGG | + | chr2_4:10047839-10047858 | None:intergenic | 25.0% |
| ! | TATTTGTCTTAGAGAGAAAA+TGG | - | chr2_4:10047841-10047860 | Msa0314330:intron | 25.0% |
| ! | AAACATTAGAGAAGACATAA+TGG | + | chr2_4:10047971-10047990 | None:intergenic | 25.0% |
| ! | TGAAAAATCAGAATGTAGAT+TGG | + | chr2_4:10048266-10048285 | None:intergenic | 25.0% |
| !! | TACATTCTGATTTTTCACAA+TGG | - | chr2_4:10048269-10048288 | Msa0314330:intron | 25.0% |
| !! | ACATTCTGATTTTTCACAAT+GGG | - | chr2_4:10048270-10048289 | Msa0314330:intron | 25.0% |
| ! | AAGTATGTCCCAAAATTAAA+TGG | - | chr2_4:10048358-10048377 | Msa0314330:intron | 25.0% |
| !!! | GGTAAACTCCATTTAATTTT+GGG | + | chr2_4:10048369-10048388 | None:intergenic | 25.0% |
| !!! | TGGTAAACTCCATTTAATTT+TGG | + | chr2_4:10048370-10048389 | None:intergenic | 25.0% |
| !!! | TGTTCTAAAGTTACTTTTTG+CGG | - | chr2_4:10048510-10048529 | Msa0314330:intron | 25.0% |
| !!! | CTTAACTTATTTTATCAGGT+CGG | - | chr2_4:10048595-10048614 | Msa0314330:intron | 25.0% |
| !! | AAGAAAATAGTATTGAAGAG+AGG | + | chr2_4:10048813-10048832 | None:intergenic | 25.0% |
| !!! | CTAGTTAGTTTATCTGTTTT+TGG | + | chr2_4:10049382-10049401 | None:intergenic | 25.0% |
| ! | AGATATGAACAGTTAATACT+AGG | + | chr2_4:10049435-10049454 | None:intergenic | 25.0% |
| !!! | TGAATGATTTAGCTTTTCTT+AGG | + | chr2_4:10046710-10046729 | None:intergenic | 25.0% |
| ! | AACAATGTGAATATATCAAC+TGG | - | chr2_4:10047023-10047042 | Msa0314330:CDS | 25.0% |
| ! | ACAATGTGAATATATCAACT+GGG | - | chr2_4:10047024-10047043 | Msa0314330:CDS | 25.0% |
| ! | TGCTATATATCATGTTGATA+AGG | - | chr2_4:10050008-10050027 | Msa0314330:CDS | 25.0% |
| !! | AATTTGGTTGATGATTTGTG+TGG | + | chr2_4:10046757-10046776 | None:intergenic | 30.0% |
| CATTCATATGATAACCAGAA+GGG | + | chr2_4:10046989-10047008 | None:intergenic | 30.0% | |
| ACATTCATATGATAACCAGA+AGG | + | chr2_4:10046990-10047009 | None:intergenic | 30.0% | |
| !!! | GGTTTTGTTTTGTATTGTCA+TGG | - | chr2_4:10047399-10047418 | Msa0314330:intron | 30.0% |
| TAGAATAGACCTTATAGTGA+AGG | - | chr2_4:10047579-10047598 | Msa0314330:intron | 30.0% | |
| ! | TTACTTTGAATATGGATTGC+TGG | - | chr2_4:10047790-10047809 | Msa0314330:intron | 30.0% |
| GTAGACTGCTTATATAGATA+AGG | + | chr2_4:10048082-10048101 | None:intergenic | 30.0% | |
| TCTGATAAATGTAAAACGGT+TGG | - | chr2_4:10048228-10048247 | Msa0314330:intron | 30.0% | |
| GAATGTTCTTAAAGCTTATG+AGG | + | chr2_4:10048547-10048566 | None:intergenic | 30.0% | |
| ! | TCGCAATTGAAGTATTTCTT+TGG | - | chr2_4:10048620-10048639 | Msa0314330:intron | 30.0% |
| !!! | GTCATGATTTTTTTCTGCAT+TGG | + | chr2_4:10048705-10048724 | None:intergenic | 30.0% |
| TCTTAACTACTTACTGATCT+AGG | - | chr2_4:10048829-10048848 | Msa0314330:intron | 30.0% | |
| TAACATCTAATCTGAGAGTA+TGG | - | chr2_4:10048874-10048893 | Msa0314330:intron | 30.0% | |
| ATGAACTATGAAGCAAACAT+TGG | + | chr2_4:10048911-10048930 | None:intergenic | 30.0% | |
| ! | TCTGTCTAAGGTATAAGAAA+AGG | + | chr2_4:10049001-10049020 | None:intergenic | 30.0% |
| TATGAAAATGTGGTTGGAAA+AGG | + | chr2_4:10049033-10049052 | None:intergenic | 30.0% | |
| ATGTGTGTGATATGAAAATG+TGG | + | chr2_4:10049043-10049062 | None:intergenic | 30.0% | |
| TGGTTTAGGTAGAAAGAAAA+GGG | + | chr2_4:10049198-10049217 | None:intergenic | 30.0% | |
| TTGGTTTAGGTAGAAAGAAA+AGG | + | chr2_4:10049199-10049218 | None:intergenic | 30.0% | |
| !!! | GAATGGATTGCTTTTTATTG+AGG | + | chr2_4:10049241-10049260 | None:intergenic | 30.0% |
| !! | AATTTGGTTGATGATTTGTG+TGG | + | chr2_4:10046757-10046776 | None:intergenic | 30.0% |
| CATTCATATGATAACCAGAA+GGG | + | chr2_4:10046989-10047008 | None:intergenic | 30.0% | |
| ACATTCATATGATAACCAGA+AGG | + | chr2_4:10046990-10047009 | None:intergenic | 30.0% | |
| !!! | GATTTTGATGATGTCTTGAC+CGG | + | chr2_4:10046688-10046707 | None:intergenic | 35.0% |
| ACTGTATCAGTTCTTTCTGT+TGG | + | chr2_4:10046887-10046906 | None:intergenic | 35.0% | |
| CATATGAATGTGACTGCTTA+TGG | - | chr2_4:10046999-10047018 | Msa0314330:CDS | 35.0% | |
| TGCCATATACCATGTTGATA+AGG | - | chr2_4:10047094-10047113 | Msa0314330:CDS | 35.0% | |
| CACCTTATCAACATGGTATA+TGG | + | chr2_4:10047099-10047118 | None:intergenic | 35.0% | |
| AAGGATAGTTCATCTGAAGA+TGG | - | chr2_4:10047194-10047213 | Msa0314330:CDS | 35.0% | |
| TTGACGGTTAATCAAATTGG+TGG | + | chr2_4:10047255-10047274 | None:intergenic | 35.0% | |
| ACCAATTTGATTAACCGTCA+AGG | - | chr2_4:10047254-10047273 | Msa0314330:intron | 35.0% | |
| TCCTTGACGGTTAATCAAAT+TGG | + | chr2_4:10047258-10047277 | None:intergenic | 35.0% | |
| ACACAAACATTGTTCCTTGA+CGG | + | chr2_4:10047271-10047290 | None:intergenic | 35.0% | |
| !! | ATGTGTTGGTCTTCATCAAA+TGG | + | chr2_4:10047330-10047349 | None:intergenic | 35.0% |
| ATGAAGACCAACACATTTGA+AGG | - | chr2_4:10047334-10047353 | Msa0314330:intron | 35.0% | |
| ATAACAGCCTTCAAATGTGT+TGG | + | chr2_4:10047344-10047363 | None:intergenic | 35.0% | |
| TTCTTGTGCTCTTTCTTTCT+TGG | - | chr2_4:10047378-10047397 | Msa0314330:intron | 35.0% | |
| ! | TGTTTTGTATTGTCATGGGA+TGG | - | chr2_4:10047404-10047423 | Msa0314330:intron | 35.0% |
| ! | GTTTTGTATTGTCATGGGAT+GGG | - | chr2_4:10047405-10047424 | Msa0314330:intron | 35.0% |
| AGAGATAGTCCTTCACTATA+AGG | + | chr2_4:10047591-10047610 | None:intergenic | 35.0% | |
| ATAGTGAAGGACTATCTCTT+TGG | - | chr2_4:10047592-10047611 | Msa0314330:intron | 35.0% | |
| GACTGCTTATATAGATAAGG+CGG | + | chr2_4:10048079-10048098 | None:intergenic | 35.0% | |
| TTATGAACGAATTAGCTCCT+TGG | - | chr2_4:10048106-10048125 | Msa0314330:intron | 35.0% | |
| GAGTCAAAGTATGCAATCAA+TGG | + | chr2_4:10048390-10048409 | None:intergenic | 35.0% | |
| GATTGCATACTTTGACTCTA+CGG | - | chr2_4:10048392-10048411 | Msa0314330:intron | 35.0% | |
| GAAACTGAGAAGAGAGAAAT+AGG | - | chr2_4:10048452-10048471 | Msa0314330:intron | 35.0% | |
| GTGACATTACAACAATGTGT+CGG | + | chr2_4:10048676-10048695 | None:intergenic | 35.0% | |
| !!! | AATTTTAGAATCCTGCACTG+TGG | - | chr2_4:10048746-10048765 | Msa0314330:intron | 35.0% |
| GTGGTTGCTCTTATACAATA+CGG | - | chr2_4:10048765-10048784 | Msa0314330:intron | 35.0% | |
| GGTATAATGAACATAGTCTG+TGG | - | chr2_4:10048850-10048869 | Msa0314330:intron | 35.0% | |
| ! | CTAATCTGAGAGTATGGTAT+CGG | - | chr2_4:10048880-10048899 | Msa0314330:intron | 35.0% |
| !! | CTGACAAAGATTTGGTGATA+TGG | + | chr2_4:10048938-10048957 | None:intergenic | 35.0% |
| GACATTGTCTGACAAAGATT+TGG | + | chr2_4:10048946-10048965 | None:intergenic | 35.0% | |
| ! | TTTGTCAGACAATGTCACTT+AGG | - | chr2_4:10048950-10048969 | Msa0314330:intron | 35.0% |
| ! | TTGTCAGACAATGTCACTTA+GGG | - | chr2_4:10048951-10048970 | Msa0314330:intron | 35.0% |
| GTGTGATATGAAAATGTGGT+TGG | + | chr2_4:10049039-10049058 | None:intergenic | 35.0% | |
| GGTTTAGGTAGAAAGAAAAG+GGG | + | chr2_4:10049197-10049216 | None:intergenic | 35.0% | |
| ! | ATTGATGCAAGGTTTGGTTT+AGG | + | chr2_4:10049212-10049231 | None:intergenic | 35.0% |
| ATGCTAATTGATGCAAGGTT+TGG | + | chr2_4:10049218-10049237 | None:intergenic | 35.0% | |
| !! | TTAATTGGTGACCTTTTGTG+AGG | + | chr2_4:10049273-10049292 | None:intergenic | 35.0% |
| TAATGAAGGGACTAATGGTT+TGG | + | chr2_4:10049551-10049570 | None:intergenic | 35.0% | |
| TCACTAGCTGTGAGTTAATT+TGG | + | chr2_4:10049687-10049706 | None:intergenic | 35.0% | |
| CAGCTAGTGACAACAAAAAA+TGG | - | chr2_4:10049697-10049716 | Msa0314330:CDS | 35.0% | |
| CTAGTGACAACAAAAAATGG+TGG | - | chr2_4:10049700-10049719 | Msa0314330:CDS | 35.0% | |
| ACTGTATCAGTTCTTTCTGT+TGG | + | chr2_4:10046887-10046906 | None:intergenic | 35.0% | |
| CATATGAATGTGACTGCTTA+TGG | - | chr2_4:10046999-10047018 | Msa0314330:CDS | 35.0% | |
| ! | TGATAAGGTGCTTATTCCTT+TGG | - | chr2_4:10050023-10050042 | Msa0314330:CDS | 35.0% |
| TTAGGCTTAGAGAAATCCAA+AGG | + | chr2_4:10050042-10050061 | None:intergenic | 35.0% | |
| TTTGGATTTCTCTAAGCCTA+AGG | - | chr2_4:10050041-10050060 | Msa0314330:CDS | 35.0% | |
| GAACTATCCTTATCAGCTTT+AGG | + | chr2_4:10050099-10050118 | None:intergenic | 35.0% | |
| AAGGATAGTTCATCTGAAGA+TGG | - | chr2_4:10047194-10047213 | Msa0314330:CDS | 35.0% | |
| ACACAAGTAATGTGCTTTGA+AGG | + | chr2_4:10050185-10050204 | None:intergenic | 35.0% | |
| !!! | TTTGTGTGGTTTTGAGCAAG+CGG | + | chr2_4:10046743-10046762 | None:intergenic | 40.0% |
| CAACCAAATTAACTCACAGC+TGG | - | chr2_4:10046767-10046786 | Msa0314330:CDS | 40.0% | |
| TCACCAGCTGTGAGTTAATT+TGG | + | chr2_4:10046773-10046792 | None:intergenic | 40.0% | |
| CAGCTGGTGACAACAAAAAA+CGG | - | chr2_4:10046783-10046802 | Msa0314330:CDS | 40.0% | |
| !! | TTTTGATTCGCTTAGCAACC+CGG | - | chr2_4:10046941-10046960 | Msa0314330:CDS | 40.0% |
| CTGTTAATGCTACACTCACA+GGG | - | chr2_4:10047048-10047067 | Msa0314330:CDS | 40.0% | |
| GGATAAGCACCTTATCAACA+TGG | + | chr2_4:10047106-10047125 | None:intergenic | 40.0% | |
| ! | TGATAAGGTGCTTATCCCTT+TGG | - | chr2_4:10047109-10047128 | Msa0314330:CDS | 40.0% |
| TAGGCTTAGAGAAGTCCAAA+GGG | + | chr2_4:10047127-10047146 | None:intergenic | 40.0% | |
| TTAGGCTTAGAGAAGTCCAA+AGG | + | chr2_4:10047128-10047147 | None:intergenic | 40.0% | |
| TTTGGACTTCTCTAAGCCTA+AGG | - | chr2_4:10047127-10047146 | Msa0314330:CDS | 40.0% | |
| GAACTATCCTTACCAGCTTT+AGG | + | chr2_4:10047185-10047204 | None:intergenic | 40.0% | |
| TTCATCTGAAGATGGTGATC+AGG | - | chr2_4:10047202-10047221 | Msa0314330:CDS | 40.0% | |
| TCATCTGAAGATGGTGATCA+GGG | - | chr2_4:10047203-10047222 | Msa0314330:CDS | 40.0% | |
| GAGACAACTAAAGCTACTTC+TGG | - | chr2_4:10047227-10047246 | Msa0314330:CDS | 40.0% | |
| TCAATAGTTGATCCTCAAGC+TGG | - | chr2_4:10047631-10047650 | Msa0314330:intron | 40.0% | |
| AAAAAATGTCTGCCAGCTTG+AGG | + | chr2_4:10047646-10047665 | None:intergenic | 40.0% | |
| GCACGAACTAGTTATAGAGA+AGG | + | chr2_4:10047687-10047706 | None:intergenic | 40.0% | |
| GTTCGTGCTTAATTGTGCAA+TGG | - | chr2_4:10047699-10047718 | Msa0314330:intron | 40.0% | |
| TGTGCTATAAAGTTGAGCCA+AGG | - | chr2_4:10048048-10048067 | Msa0314330:intron | 40.0% | |
| TGCTTCTTTCCTCTGCTATA+CGG | + | chr2_4:10048303-10048322 | None:intergenic | 40.0% | |
| TCCTTTGTGGATCAGTTCTT+AGG | + | chr2_4:10048646-10048665 | None:intergenic | 40.0% | |
| AGGAGCTATTGATCTGTCTA+AGG | + | chr2_4:10049013-10049032 | None:intergenic | 40.0% | |
| TGACAGTAGAGATTTGACAG+TGG | + | chr2_4:10049128-10049147 | None:intergenic | 40.0% | |
| TGAGGATGCTAATTGATGCA+AGG | + | chr2_4:10049223-10049242 | None:intergenic | 40.0% | |
| ! | TGACCTTTTGTGAGGAATGA+GGG | + | chr2_4:10049265-10049284 | None:intergenic | 40.0% |
| GAGTGTTTGATGTGTAGTGT+AGG | + | chr2_4:10049324-10049343 | None:intergenic | 40.0% | |
| AGGTGATTGAGCTGAAGTAA+TGG | + | chr2_4:10049464-10049483 | None:intergenic | 40.0% | |
| TGAGGTAATGAAGGGACTAA+TGG | + | chr2_4:10049556-10049575 | None:intergenic | 40.0% | |
| AGGGTGATTGAGGTAATGAA+GGG | + | chr2_4:10049564-10049583 | None:intergenic | 40.0% | |
| !!! | TTTGTGTGGTTTTGAGCAAG+CGG | + | chr2_4:10046743-10046762 | None:intergenic | 40.0% |
| CTGTTAATGCTACACTCACA+GGG | - | chr2_4:10047048-10047067 | Msa0314330:CDS | 40.0% | |
| TCATCTGAAGATGGTGATCA+AGG | - | chr2_4:10047203-10047222 | Msa0314330:CDS | 40.0% | |
| GAGACAACTAAAGCTACTTC+TGG | - | chr2_4:10047227-10047246 | Msa0314330:CDS | 40.0% | |
| TGAGGTAATGAGGGGACTAA+TGG | + | chr2_4:10046642-10046661 | None:intergenic | 45.0% | |
| AGGGTGATTGAGGTAATGAG+GGG | + | chr2_4:10046650-10046669 | None:intergenic | 45.0% | |
| GAGGGTGATTGAGGTAATGA+GGG | + | chr2_4:10046651-10046670 | None:intergenic | 45.0% | |
| TGAGGGTGATTGAGGTAATG+AGG | + | chr2_4:10046652-10046671 | None:intergenic | 45.0% | |
| GTCTTGACCGGAAGATGAAT+CGG | + | chr2_4:10046676-10046695 | None:intergenic | 45.0% | |
| CTGGTGACAACAAAAAACGG+TGG | - | chr2_4:10046786-10046805 | Msa0314330:CDS | 45.0% | |
| ! | ACCGAGGGAATTGAAGTATC+CGG | + | chr2_4:10046859-10046878 | None:intergenic | 45.0% |
| TTTGAGCTCGAGACGTAAAC+AGG | + | chr2_4:10046921-10046940 | None:intergenic | 45.0% | |
| ATAACCAGAAGGGCTATCAC+TGG | + | chr2_4:10046979-10046998 | None:intergenic | 45.0% | |
| CCTGTGAGTGTAGCATTAAC+AGG | + | chr2_4:10047050-10047069 | None:intergenic | 45.0% | |
| CCTGTTAATGCTACACTCAC+AGG | - | chr2_4:10047047-10047066 | Msa0314330:CDS | 45.0% | |
| TGTATTGTCATGGGATGGGA+TGG | - | chr2_4:10047409-10047428 | Msa0314330:intron | 45.0% | |
| GTATTGTCATGGGATGGGAT+GGG | - | chr2_4:10047410-10047429 | Msa0314330:intron | 45.0% | |
| GTGAAGGACTATCTCTTTGG+AGG | - | chr2_4:10047595-10047614 | Msa0314330:intron | 45.0% | |
| TGGATTGCTGGAATGACATC+TGG | - | chr2_4:10047802-10047821 | Msa0314330:intron | 45.0% | |
| ACGAATTAGCTCCTTGGTGA+TGG | - | chr2_4:10048112-10048131 | Msa0314330:intron | 45.0% | |
| CATAGATCGATCCATCACCA+AGG | + | chr2_4:10048126-10048145 | None:intergenic | 45.0% | |
| TACGGAACAATGCGTCCTTT+AGG | - | chr2_4:10048410-10048429 | Msa0314330:intron | 45.0% | |
| ACGGAACAATGCGTCCTTTA+GGG | - | chr2_4:10048411-10048430 | Msa0314330:intron | 45.0% | |
| CACAACCAAACACACCCTAA+AGG | + | chr2_4:10048428-10048447 | None:intergenic | 45.0% | |
| GCCTAAGAACTGATCCACAA+AGG | - | chr2_4:10048642-10048661 | Msa0314330:intron | 45.0% | |
| TGTCGGAAGAGTTTCCTTTG+TGG | + | chr2_4:10048659-10048678 | None:intergenic | 45.0% | |
| TATAAGAGCAACCACAGTGC+AGG | + | chr2_4:10048760-10048779 | None:intergenic | 45.0% | |
| !! | TCTGAGAGTATGGTATCGGT+AGG | - | chr2_4:10048884-10048903 | Msa0314330:intron | 45.0% |
| TTGTGAGGAATGAGGGAGAA+TGG | + | chr2_4:10049258-10049277 | None:intergenic | 45.0% | |
| TCTCCCTCATTCCTCACAAA+AGG | - | chr2_4:10049259-10049278 | Msa0314330:intron | 45.0% | |
| ! | GTGACCTTTTGTGAGGAATG+AGG | + | chr2_4:10049266-10049285 | None:intergenic | 45.0% |
| !! | GAAGGGACTAATGGTTTGGT+TGG | + | chr2_4:10049547-10049566 | None:intergenic | 45.0% |
| GAGGGTGATTGAGGTAATGA+AGG | + | chr2_4:10046651-10046670 | None:intergenic | 45.0% | |
| GAATCAGATGAGGGTGATTG+AGG | + | chr2_4:10049574-10049593 | None:intergenic | 45.0% | |
| CCTGACGAAGAATCAGATGA+GGG | + | chr2_4:10049583-10049602 | None:intergenic | 45.0% | |
| ACCTGACGAAGAATCAGATG+AGG | + | chr2_4:10049584-10049603 | None:intergenic | 45.0% | |
| !! | GAAGTATCCGGCTTTGAGTT+GGG | + | chr2_4:10049761-10049780 | None:intergenic | 45.0% |
| !! | TGAAGTATCCGGCTTTGAGT+TGG | + | chr2_4:10049762-10049781 | None:intergenic | 45.0% |
| TTTGAGCTCGAGACGTAAAC+AGG | + | chr2_4:10046921-10046940 | None:intergenic | 45.0% | |
| ATAACCAGAAGGGCTATCAC+TGG | + | chr2_4:10046979-10046998 | None:intergenic | 45.0% | |
| CCTGTGAGTGTAGCATTAAC+AGG | + | chr2_4:10047050-10047069 | None:intergenic | 45.0% | |
| CCTGTTAATGCTACACTCAC+AGG | - | chr2_4:10047047-10047066 | Msa0314330:CDS | 45.0% | |
| GGTTGCTGCAGCAACAAAAA+GGG | + | chr2_4:10050208-10050227 | None:intergenic | 45.0% | |
| TGGTTGCTGCAGCAACAAAA+AGG | + | chr2_4:10050209-10050228 | None:intergenic | 45.0% | |
| AGCAGGTGATTGAGCTGTAG+TGG | + | chr2_4:10046553-10046572 | None:intergenic | 50.0% | |
| !! | GAGGGGACTAATGGTTTTGC+CGG | + | chr2_4:10046633-10046652 | None:intergenic | 50.0% |
| GAATCGGATGAGGGTGATTG+AGG | + | chr2_4:10046660-10046679 | None:intergenic | 50.0% | |
| CCGGAAGATGAATCGGATGA+GGG | + | chr2_4:10046669-10046688 | None:intergenic | 50.0% | |
| CCCTCATCCGATTCATCTTC+CGG | - | chr2_4:10046666-10046685 | Msa0314330:CDS | 50.0% | |
| ACCGGAAGATGAATCGGATG+AGG | + | chr2_4:10046670-10046689 | None:intergenic | 50.0% | |
| ACCATCCTTGCACCAGATGA+TGG | - | chr2_4:10046813-10046832 | Msa0314330:CDS | 50.0% | |
| ACCATCATCTGGTGCAAGGA+TGG | + | chr2_4:10046817-10046836 | None:intergenic | 50.0% | |
| !! | TGCGAAAAGGCACCATCATC+TGG | + | chr2_4:10046828-10046847 | None:intergenic | 50.0% |
| GCCGGATACTTCAATTCCCT+CGG | - | chr2_4:10046855-10046874 | Msa0314330:CDS | 50.0% | |
| TTTCTGTTGGCGTTCACCGA+GGG | + | chr2_4:10046874-10046893 | None:intergenic | 50.0% | |
| AGAAGGGCTATCACTGGCAA+GGG | + | chr2_4:10046973-10046992 | None:intergenic | 50.0% | |
| ! | TCTAGCTCCTGCTCCTTCTA+CGG | - | chr2_4:10047151-10047170 | Msa0314330:CDS | 50.0% |
| !! | AAAGGCGCCTAAAGCTGGTA+AGG | - | chr2_4:10047175-10047194 | Msa0314330:CDS | 50.0% |
| !! | TGCGTCCTTTAGGGTGTGTT+TGG | - | chr2_4:10048420-10048439 | Msa0314330:intron | 50.0% |
| CCCTCATCTGATTCTTCGTC+AGG | - | chr2_4:10049580-10049599 | Msa0314330:CDS | 50.0% | |
| ACCATCCTTGCACCTGATGA+TGG | - | chr2_4:10049727-10049746 | Msa0314330:CDS | 50.0% | |
| ACCATCATCAGGTGCAAGGA+TGG | + | chr2_4:10049731-10049750 | None:intergenic | 50.0% | |
| !! | TGGGAAAAGGCACCATCATC+AGG | + | chr2_4:10049742-10049761 | None:intergenic | 50.0% |
| ! | GCCTTTTCCCAACTCAAAGC+CGG | - | chr2_4:10049751-10049770 | Msa0314330:CDS | 50.0% |
| !! | TCCGGCTTTGAGTTGGGAAA+AGG | + | chr2_4:10049755-10049774 | None:intergenic | 50.0% |
| ! | GCCAAGGGAGTTGAAGTATC+CGG | + | chr2_4:10049773-10049792 | None:intergenic | 50.0% |
| TTTCTGTTGGCGTTCGCCAA+GGG | + | chr2_4:10049788-10049807 | None:intergenic | 50.0% | |
| !! | GAAGGCGCCTAAAGCTGATA+AGG | - | chr2_4:10050089-10050108 | Msa0314330:CDS | 50.0% |
| ! | GCAGGTTTTGCTGCGGCTTT+AGG | + | chr2_4:10046582-10046601 | None:intergenic | 55.0% |
| AGGCACCATCATCTGGTGCA+AGG | + | chr2_4:10046821-10046840 | None:intergenic | 55.0% | |
| ! | GCCTTTTCGCAGCTCAAAGC+CGG | - | chr2_4:10046837-10046856 | Msa0314330:CDS | 55.0% |
| !! | TCCGGCTTTGAGCTGCGAAA+AGG | + | chr2_4:10046841-10046860 | None:intergenic | 55.0% |
| CTTTCTGTTGGCGTTCACCG+AGG | + | chr2_4:10046875-10046894 | None:intergenic | 55.0% | |
| CAGAAGGGCTATCACTGGCA+AGG | + | chr2_4:10046974-10046993 | None:intergenic | 55.0% | |
| CTTGCCAGTGATAGCCCTTC+TGG | - | chr2_4:10046972-10046991 | Msa0314330:CDS | 55.0% | |
| TCCTGCTCCTTCTACGGCAA+AGG | - | chr2_4:10047157-10047176 | Msa0314330:CDS | 55.0% | |
| TTAGGCGCCTTTGCCGTAGA+AGG | + | chr2_4:10047167-10047186 | None:intergenic | 55.0% | |
| TAGATAAGGCGGCGCATCCT+TGG | + | chr2_4:10048068-10048087 | None:intergenic | 55.0% | |
| GGCTTGAGACCGTATAGCAG+AGG | - | chr2_4:10048291-10048310 | Msa0314330:intron | 55.0% | |
| !! | GGTTTGGTTGGTGCTGTTGC+AGG | + | chr2_4:10049535-10049554 | None:intergenic | 55.0% |
| AGGCACCATCATCAGGTGCA+AGG | + | chr2_4:10049735-10049754 | None:intergenic | 55.0% | |
| GCCGGATACTTCAACTCCCT+TGG | - | chr2_4:10049769-10049788 | Msa0314330:CDS | 55.0% | |
| CTTTCTGTTGGCGTTCGCCA+AGG | + | chr2_4:10049789-10049808 | None:intergenic | 55.0% | |
| CTTGCCAGTGATAGCCCTTC+TGG | - | chr2_4:10046972-10046991 | Msa0314330:CDS | 55.0% | |
| ! | TCTAGCTCCTGCTCCTGCTA+CGG | - | chr2_4:10050065-10050084 | Msa0314330:CDS | 55.0% |
| !!! | GGTTTTGCCGGTGCTGTTGC+TGG | + | chr2_4:10046621-10046640 | None:intergenic | 60.0% |
| TCACTGGCAAGGGTCAGCAC+CGG | + | chr2_4:10046963-10046982 | None:intergenic | 60.0% | |
| GGAGCAGGAGCTAGAGCCTT+AGG | + | chr2_4:10047146-10047165 | None:intergenic | 60.0% | |
| GCCTTTGCCGTAGAAGGAGC+AGG | + | chr2_4:10047161-10047180 | None:intergenic | 60.0% | |
| !! | ACGGCAAAGGCGCCTAAAGC+TGG | - | chr2_4:10047170-10047189 | Msa0314330:CDS | 60.0% |
| TGCTGCAGCACCTAAAGCCC+CGG | - | chr2_4:10049483-10049502 | Msa0314330:CDS | 60.0% | |
| TGTTGCAGGAGCTGGTGTGG+CGG | + | chr2_4:10049521-10049540 | None:intergenic | 60.0% | |
| TGCTGTTGCAGGAGCTGGTG+TGG | + | chr2_4:10049524-10049543 | None:intergenic | 60.0% | |
| !! | GTTGGTGCTGTTGCAGGAGC+TGG | + | chr2_4:10049529-10049548 | None:intergenic | 60.0% |
| CACTGGCAAGCGTCAGCACA+GGG | + | chr2_4:10049876-10049895 | None:intergenic | 60.0% | |
| TCACTGGCAAGCGTCAGCAC+AGG | + | chr2_4:10049877-10049896 | None:intergenic | 60.0% | |
| GGAGCAGGAGCTAGAGCCTT+AGG | + | chr2_4:10047146-10047165 | None:intergenic | 60.0% | |
| !! | GCGGCTTTAGGTGCTGCAGC+AGG | + | chr2_4:10046570-10046589 | None:intergenic | 65.0% |
| ! | GGCAGGGGCAGGTTTTGCTG+CGG | + | chr2_4:10046589-10046608 | None:intergenic | 65.0% |
| TTGCTGGAGCTGGCGTGGCA+GGG | + | chr2_4:10046605-10046624 | None:intergenic | 65.0% | |
| TGCTGTTGCTGGAGCTGGCG+TGG | + | chr2_4:10046610-10046629 | None:intergenic | 65.0% | |
| GCCAGCTCCAGCAACAGCAC+CGG | - | chr2_4:10046611-10046630 | Msa0314330:CDS | 65.0% | |
| CACTGGCAAGGGTCAGCACC+GGG | + | chr2_4:10046962-10046981 | None:intergenic | 65.0% | |
| !! | GGGGCTTTAGGTGCTGCAGC+AGG | + | chr2_4:10049484-10049503 | None:intergenic | 65.0% |
| ! | GCGGGTTTTGCCGGGGCTTT+AGG | + | chr2_4:10049496-10049515 | None:intergenic | 65.0% |
| TTGCAGGAGCTGGTGTGGCG+GGG | + | chr2_4:10049519-10049538 | None:intergenic | 65.0% | |
| GTTGCAGGAGCTGGTGTGGC+GGG | + | chr2_4:10049520-10049539 | None:intergenic | 65.0% | |
| TCCTGCTCCTGCTACGGCGA+AGG | - | chr2_4:10050071-10050090 | Msa0314330:CDS | 65.0% | |
| TTAGGCGCCTTCGCCGTAGC+AGG | + | chr2_4:10050081-10050100 | None:intergenic | 65.0% | |
| TGCTGGAGCTGGCGTGGCAG+GGG | + | chr2_4:10046604-10046623 | None:intergenic | 70.0% | |
| GTTGCTGGAGCTGGCGTGGC+AGG | + | chr2_4:10046606-10046625 | None:intergenic | 70.0% | |
| !! | GCCGGTGCTGTTGCTGGAGC+TGG | + | chr2_4:10046615-10046634 | None:intergenic | 70.0% |
| TGCAGGAGCTGGTGTGGCGG+GGG | + | chr2_4:10049518-10049537 | None:intergenic | 70.0% | |
| GCCTTCGCCGTAGCAGGAGC+AGG | + | chr2_4:10050075-10050094 | None:intergenic | 70.0% | |
| !! | TGGCGGGGGCGGGTTTTGCC+GGG | + | chr2_4:10049504-10049523 | None:intergenic | 75.0% |
| !! | GTGGCGGGGGCGGGTTTTGC+CGG | + | chr2_4:10049505-10049524 | None:intergenic | 75.0% |
| ! | AGGAGCTGGTGTGGCGGGGG+CGG | + | chr2_4:10049515-10049534 | None:intergenic | 75.0% |
| ! | GGAGCTGGCGTGGCAGGGGC+AGG | + | chr2_4:10046600-10046619 | None:intergenic | 80.0% |
| !!! | GGCGGGGGCGGGTTTTGCCG+GGG | + | chr2_4:10049503-10049522 | None:intergenic | 80.0% |
| !! | GGAGCTGGTGTGGCGGGGGC+GGG | + | chr2_4:10049514-10049533 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 10046495 | 10050239 | 10046495 | ID=Msa0314330;Name=Msa0314330 |
| chr2_4 | mRNA | 10046495 | 10050239 | 10046495 | ID=Msa0314330-mRNA-1;Parent=Msa0314330;Name=Msa0314330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|513 |
| chr2_4 | exon | 10049465 | 10050239 | 10049465 | ID=Msa0314330-mRNA-1:exon:3874;Parent=Msa0314330-mRNA-1 |
| chr2_4 | exon | 10046495 | 10047261 | 10046495 | ID=Msa0314330-mRNA-1:exon:3873;Parent=Msa0314330-mRNA-1 |
| chr2_4 | CDS | 10049465 | 10050239 | 10049465 | ID=Msa0314330-mRNA-1:cds;Parent=Msa0314330-mRNA-1 |
| chr2_4 | CDS | 10046495 | 10047261 | 10046495 | ID=Msa0314330-mRNA-1:cds;Parent=Msa0314330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
