AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0235870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0235870 MtrunA17_Chr2g0284451 91.409 291 23 1 420 710 7 295 1.04e-174 501
Msa0235870 MtrunA17_Chr2g0284451 38.603 272 108 9 27 252 31 289 7.67e-39 145
Msa0235870 MtrunA17_Chr2g0284451 45.455 187 71 5 250 405 71 257 1.15e-34 134
Msa0235870 MtrunA17_Chr2g0284411 87.045 247 7 2 26 247 24 270 1.08e-138 408
Msa0235870 MtrunA17_Chr2g0284411 83.495 206 14 2 248 433 66 271 4.06e-110 334
Msa0235870 MtrunA17_Chr2g0284411 53.439 189 75 4 484 672 68 243 2.63e-53 185
Msa0235870 MtrunA17_Chr2g0284431 85.657 251 11 2 23 248 42 292 7.57e-113 342
Msa0235870 MtrunA17_Chr2g0284431 84.390 205 12 2 248 432 87 291 1.01e-110 337
Msa0235870 MtrunA17_Chr2g0284431 46.875 224 104 5 484 706 89 298 3.95e-54 188
Msa0235870 MtrunA17_Chr8g0379621 61.250 320 80 9 422 709 9 316 4.97e-109 333
Msa0235870 MtrunA17_Chr8g0379621 48.969 194 62 7 35 192 50 242 1.31e-38 145
Msa0235870 MtrunA17_Chr8g0379621 42.791 215 86 7 250 428 93 306 2.42e-36 139
Msa0235870 MtrunA17_Chr8g0379631 61.562 320 79 10 422 709 9 316 2.04e-108 332
Msa0235870 MtrunA17_Chr8g0379631 48.969 194 62 7 35 192 50 242 2.53e-38 144
Msa0235870 MtrunA17_Chr8g0379631 42.791 215 86 7 250 428 93 306 2.29e-36 139
Msa0235870 MtrunA17_Chr8g0379611 67.194 253 47 5 23 239 20 272 7.67e-79 254
Msa0235870 MtrunA17_Chr8g0379611 69.802 202 40 3 249 429 76 277 3.07e-70 232
Msa0235870 MtrunA17_Chr8g0379611 43.697 238 113 4 477 706 62 286 3.36e-52 183
Msa0235870 MtrunA17_Chr4g0026611 48.658 298 125 8 421 704 8 291 9.18e-67 222
Msa0235870 MtrunA17_Chr4g0026611 51.316 228 72 6 21 213 28 251 7.22e-50 176
Msa0235870 MtrunA17_Chr4g0026611 55.114 176 51 4 250 398 77 251 1.51e-49 175
Msa0235870 MtrunA17_Chr4g0029501 44.518 301 141 8 419 704 1 290 9.16e-66 219
Msa0235870 MtrunA17_Chr4g0029501 50.222 225 61 6 44 217 30 254 6.13e-53 184
Msa0235870 MtrunA17_Chr4g0029501 50.237 211 76 4 250 431 73 283 7.98e-53 184
Msa0235870 MtrunA17_Chr2g0326411 42.193 301 138 6 423 706 7 288 2.93e-64 215
Msa0235870 MtrunA17_Chr2g0326411 45.161 217 87 4 250 434 69 285 1.26e-44 162
Msa0235870 MtrunA17_Chr2g0326411 40.541 259 113 6 30 248 25 282 2.84e-44 160
Msa0235870 MtrunA17_Chr4g0029441 49.593 246 102 7 436 669 22 257 9.67e-62 208
Msa0235870 MtrunA17_Chr4g0029441 49.545 220 74 5 53 235 53 272 2.02e-52 183
Msa0235870 MtrunA17_Chr4g0029441 49.289 211 78 4 250 431 73 283 4.78e-52 182
Msa0235870 MtrunA17_Chr4g0029331 52.889 225 69 5 418 639 20 210 3.98e-61 206
Msa0235870 MtrunA17_Chr4g0029331 49.689 161 56 3 60 196 53 212 4.99e-37 139
Msa0235870 MtrunA17_Chr4g0029331 48.684 152 57 3 250 381 62 212 1.22e-33 130
Msa0235870 MtrunA17_Chr2g0326431 60.897 156 54 2 484 639 41 189 2.57e-56 192
Msa0235870 MtrunA17_Chr2g0326431 51.020 147 48 2 70 192 41 187 1.71e-35 134
Msa0235870 MtrunA17_Chr2g0326431 48.649 148 55 3 250 377 41 187 7.00e-33 127
Msa0235870 MtrunA17_Chr2g0326421 45.600 250 115 7 444 692 37 266 5.62e-55 190
Msa0235870 MtrunA17_Chr2g0326421 45.833 240 99 5 37 248 39 275 2.62e-48 171
Msa0235870 MtrunA17_Chr2g0326421 47.847 209 84 5 250 434 69 276 5.82e-44 159
Msa0235870 MtrunA17_Chr4g0029431 53.684 190 74 5 448 637 39 214 7.36e-50 176
Msa0235870 MtrunA17_Chr4g0029431 47.431 253 100 6 24 245 22 272 1.72e-45 164
Msa0235870 MtrunA17_Chr4g0029431 52.980 151 51 2 247 377 64 214 8.69e-37 139
Msa0235870 MtrunA17_Chr7g0263981 48.235 170 79 4 469 637 26 187 7.41e-41 150
Msa0235870 MtrunA17_Chr7g0263981 42.177 147 63 4 250 375 40 185 1.94e-24 103
Msa0235870 MtrunA17_Chr7g0263981 37.143 175 69 4 41 190 27 185 6.55e-24 101
Msa0235870 MtrunA17_Chr2g0325021 32.812 256 131 9 463 703 20 249 8.62e-27 109
Msa0235870 MtrunA17_Chr2g0325021 38.710 155 71 3 59 189 27 181 5.61e-16 78.2
Msa0235870 MtrunA17_Chr2g0325021 36.552 145 71 3 250 374 38 181 3.39e-11 64.3
Msa0235870 MtrunA17_Chr5g0448001 31.765 170 104 4 483 650 47 206 1.60e-16 80.1
Msa0235870 MtrunA17_Chr7g0246041 33.516 182 96 6 478 650 178 343 1.05e-15 80.1
Msa0235870 MtrunA17_Chr2g0296571 30.357 168 99 5 474 637 190 343 6.67e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0235870 AT5G03170.1 50.265 189 82 6 471 658 26 203 1.80e-46 166
Msa0235870 AT5G03170.1 42.012 169 76 4 250 397 36 203 1.66e-28 115
Msa0235870 AT5G03170.1 38.889 180 83 4 59 212 25 203 3.26e-27 111
Msa0235870 AT5G60490.1 53.289 152 63 3 484 634 39 183 1.85e-43 157
Msa0235870 AT5G60490.1 47.586 145 51 3 70 189 39 183 5.10e-30 119
Msa0235870 AT5G60490.1 45.000 140 58 3 250 371 39 177 1.72e-25 106
Msa0235870 AT5G44130.1 38.942 208 113 4 483 689 35 229 5.89e-30 119
Msa0235870 AT5G44130.1 37.436 195 95 6 250 418 36 229 1.40e-22 98.2
Msa0235870 AT5G44130.1 37.113 194 92 5 70 233 36 229 2.19e-21 94.7
Msa0235870 AT2G20520.1 38.889 216 116 7 460 668 17 223 4.70e-29 116
Msa0235870 AT2G20520.1 35.484 186 89 6 52 209 19 201 5.13e-16 79.0
Msa0235870 AT2G20520.1 34.010 197 93 8 250 414 38 229 7.81e-14 72.4
Msa0235870 AT1G03870.1 33.929 224 128 5 483 705 38 242 1.67e-27 112
Msa0235870 AT1G03870.1 34.595 185 91 5 70 229 39 218 8.21e-17 81.3
Msa0235870 AT1G03870.1 33.871 186 96 6 250 414 39 218 2.75e-16 79.7
Msa0235870 AT3G46550.1 35.000 180 104 5 475 650 198 368 1.59e-18 89.4
Msa0235870 AT4G12730.1 29.534 193 119 6 522 704 218 403 8.23e-11 65.1
Msa0235870 AT3G60900.1 30.978 184 109 5 471 652 180 347 8.56e-11 65.1

Find 167 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGGCTTTGCTGCGGCTTT+AGG 0.137430 2_2:-8712780 None:intergenic
TTCTTGTTTGTGATTGAATT+TGG 0.203323 2_2:-8712672 None:intergenic
GTTGCTGGAGCTGGCGTGGC+AGG 0.213569 2_2:-8712804 None:intergenic
ATGTCTATGGATGGTGATTT+TGG 0.215958 2_2:-8719048 None:intergenic
CAACTTAATGTAACCACTTC+TGG 0.262903 2_2:+8719387 Msa0235870:CDS
GGGGCCCCACTTGGGGATAC+TGG 0.273802 2_2:-8719009 None:intergenic
CATATGAATGTGACTGCTTA+TGG 0.274154 2_2:+8713200 Msa0235870:CDS
CATATGAATGTGACTGCTTA+TGG 0.274154 2_2:+8716926 Msa0235870:CDS
TCACTAGCTGTGAGTTAATT+TGG 0.274822 2_2:-8716697 None:intergenic
TTGCTGGAGCTGGCGTGGCA+GGG 0.274945 2_2:-8712803 None:intergenic
GGAGCTGGCGTGGCAGGGGC+AGG 0.281400 2_2:-8712798 None:intergenic
TTTGAAAAGGCACTGTCTTC+TGG 0.282142 2_2:-8719213 None:intergenic
TCACCAGCTGTGAGTTAATT+TGG 0.285640 2_2:-8712971 None:intergenic
GTCTGTCACTGAGGGAATTA+AGG 0.293100 2_2:-8719251 None:intergenic
GCCGGTGCTGTTGCTGGAGC+TGG 0.297976 2_2:-8712813 None:intergenic
TCCTTGACGGTTAATCAAAT+TGG 0.306881 2_2:-8713456 None:intergenic
GAGGATTTGGATAATGTCTA+TGG 0.319762 2_2:-8719061 None:intergenic
CTTGCCAGCGATAGCCCTTC+TGG 0.321020 2_2:+8713173 Msa0235870:CDS
GAACTATCCTTAGCAGCTTT+AGG 0.328798 2_2:-8713383 None:intergenic
TGATAAGGTGCTTATTCCTT+TGG 0.335490 2_2:+8717036 Msa0235870:intron
CAACAAACTAGCTGTATATC+AGG 0.345531 2_2:+8719476 Msa0235870:CDS
CTTGCCAGTGATAGCCCTTC+TGG 0.345918 2_2:+8716899 Msa0235870:CDS
AACAATGTGAATATATCAAC+TGG 0.346164 2_2:+8713224 Msa0235870:CDS
AACAATGTGAATATATCAAC+TGG 0.346164 2_2:+8716950 Msa0235870:CDS
CCCTCATCCGATTCATCTTC+CGG 0.349916 2_2:+8712867 Msa0235870:CDS
TGATAAAGTGCTTATCCCTT+TGG 0.353977 2_2:+8713310 Msa0235870:CDS
TTAGGTGCCTTTGCCGTAGA+AGG 0.356569 2_2:-8713365 None:intergenic
GCTGTTAACGCAACCGTTAC+AGG 0.357416 2_2:+8719438 Msa0235870:CDS
TACATTAAGTTGTAACCGTT+TGG 0.376789 2_2:-8719376 None:intergenic
CCTGTGAGTGTAGCATTAAC+AGG 0.382985 2_2:-8713248 None:intergenic
CCTGTGAGTGTAGCATTAAC+AGG 0.382985 2_2:-8716974 None:intergenic
TGAGGTAATGAGGGGACTAA+TGG 0.391231 2_2:-8712840 None:intergenic
TCACCAGCTTGTGTTTGAAC+CGG 0.397830 2_2:-8719348 None:intergenic
CCTGCAGAAGCTTCTGGTGC+TGG 0.401485 2_2:+8719651 Msa0235870:CDS
TTCATCTGAAGATGGTGATC+AGG 0.406962 2_2:+8713403 Msa0235870:CDS
GAACTATCCTTATCAGCTTT+AGG 0.420123 2_2:-8717109 None:intergenic
GACTTGCCTGCAGAAGCTTC+TGG 0.421044 2_2:+8719645 Msa0235870:CDS
GGAGCAGGAGCTAGAGCCTT+AGG 0.421990 2_2:-8717070 None:intergenic
TTTGAGCTCGAGACGTAAAC+AGG 0.428217 2_2:-8713119 None:intergenic
ACACAAACATTGTTCCTTGA+CGG 0.432040 2_2:-8713469 None:intergenic
GGAGCAGGAGCTAGAGCCTT+AGG 0.432560 2_2:-8713344 None:intergenic
TTTGGATTTCTCTAAGCCTA+AGG 0.436103 2_2:+8717054 Msa0235870:CDS
GATGAATCTCCTTTAGAAAC+CGG 0.436210 2_2:-8719564 None:intergenic
TGCTGGAGCTGGCGTGGCAG+GGG 0.436414 2_2:-8712802 None:intergenic
CTTTCTGTTGGCGTTCGCCA+AGG 0.437630 2_2:-8716799 None:intergenic
GAAGTATCCGGCTTTGAGTT+GGG 0.438548 2_2:-8716771 None:intergenic
TCCTGCTCCTGCTACGGCGA+AGG 0.440885 2_2:+8717084 Msa0235870:CDS
TTAGGCGCCTTCGCCGTAGC+AGG 0.446841 2_2:-8717091 None:intergenic
ACTGTATCAGTTCTTTCTGT+TGG 0.447264 2_2:-8713085 None:intergenic
ACTGTATCAGTTCTTTCTGT+TGG 0.447264 2_2:-8716811 None:intergenic
TGGGAAAAGGCACCATCATC+AGG 0.449115 2_2:-8716752 None:intergenic
GCGGCTTTAGGTGCTGCAGC+AGG 0.450878 2_2:-8712768 None:intergenic
GCCAGCTCCAGCAACAGCAC+CGG 0.451213 2_2:+8712812 Msa0235870:CDS
TCCGGCTTTGAGTTGGGAAA+AGG 0.452280 2_2:-8716765 None:intergenic
GAGACAACTAAAGCTACTTC+TGG 0.452965 2_2:+8713428 Msa0235870:CDS
GAGACAACTAAAGCTACTTC+TGG 0.452965 2_2:+8717154 Msa0235870:CDS
TGTTTGAACCGGGTTGGTTA+AGG 0.453918 2_2:-8719337 None:intergenic
GCCTTCGCCGTAGCAGGAGC+AGG 0.456420 2_2:-8717085 None:intergenic
TAACTATTTGTGAGTTGAGT+TGG 0.460271 2_2:-8719143 None:intergenic
TCCTGCACTTGCACCTGCAC+CGG 0.461846 2_2:+8719545 Msa0235870:CDS
CACCAGCTTGTGTTTGAACC+GGG 0.466085 2_2:-8719347 None:intergenic
GATGACTTGCTTCTATCATC+AGG 0.467697 2_2:-8719591 None:intergenic
TGGGATAATACTAGGGGTGG+GGG 0.470197 2_2:-8719028 None:intergenic
CCTGTTAATGCTACACTCAC+AGG 0.472842 2_2:+8713248 Msa0235870:CDS
CCTGTTAATGCTACACTCAC+AGG 0.472842 2_2:+8716974 Msa0235870:CDS
ACCGGTGCAGGTGCAAGTGC+AGG 0.474053 2_2:-8719546 None:intergenic
TTTGGACTTCTCTAAGCCTA+AGG 0.478601 2_2:+8713328 Msa0235870:CDS
GCCAAGGGAGTTGAAGTATC+CGG 0.481250 2_2:-8716783 None:intergenic
GCACCTGCACCGGTTTCTAA+AGG 0.482663 2_2:+8719555 Msa0235870:CDS
TTTCTGTTGGCGTTCGCCGA+GGG 0.486603 2_2:-8713072 None:intergenic
GAATCGGATGAGGGTGATTG+AGG 0.487257 2_2:-8712858 None:intergenic
TTTCTGTTGGCGTTCGCCAA+GGG 0.488696 2_2:-8716798 None:intergenic
CTGAGGGAATTAAGGAAACC+TGG 0.491886 2_2:-8719243 None:intergenic
CGCTGGCAAGTGTCAGCACC+GGG 0.492060 2_2:-8713160 None:intergenic
TGAAGTATCCGGCTTTGAGT+TGG 0.493632 2_2:-8716772 None:intergenic
GCCGAGGGAATTGAAGTATC+CGG 0.494579 2_2:-8713057 None:intergenic
ACCATCCTTGCACCTGATGA+TGG 0.495059 2_2:+8716740 Msa0235870:CDS
GAGTTGTGCTGAGGTGGTAG+TGG 0.496520 2_2:-8718923 None:intergenic
AGCCATGTTAGTATGACAAC+TGG 0.497715 2_2:+8719414 Msa0235870:CDS
GCAAGTGCAGGAGCTTTAGC+AGG 0.504101 2_2:-8719534 None:intergenic
GCCGGATACTTCAACTCCCT+TGG 0.504856 2_2:+8716782 Msa0235870:CDS
TGCTGTTGCTGGAGCTGGCG+TGG 0.504987 2_2:-8712808 None:intergenic
TACTTTGTGTCTGTCACTGA+GGG 0.508476 2_2:-8719259 None:intergenic
AGCTTGTGTTTGAACCGGGT+TGG 0.515091 2_2:-8719343 None:intergenic
TTGGGATAATACTAGGGGTG+GGG 0.515374 2_2:-8719029 None:intergenic
CTTTCTGTTGGCGTTCGCCG+AGG 0.515455 2_2:-8713073 None:intergenic
GTCTTGACCGGAAGATGAAT+CGG 0.516491 2_2:-8712874 None:intergenic
GAGGGTGATTGAGGTAATGA+GGG 0.517617 2_2:-8712849 None:intergenic
TTGACGGTTAATCAAATTGG+TGG 0.520132 2_2:-8713453 None:intergenic
TCGCTGGCAAGTGTCAGCAC+CGG 0.521824 2_2:-8713161 None:intergenic
TGCTGGTTATTCAAACATGA+AGG 0.522342 2_2:+8719668 Msa0235870:CDS
TCATCTGAAGATGGTGATCA+AGG 0.523011 2_2:+8717130 Msa0235870:CDS
ACACAAGTAATGTGCTTTGA+AGG 0.524778 2_2:-8717195 None:intergenic
GCCTTTGCCGTAGAAGGAGC+AGG 0.528366 2_2:-8713359 None:intergenic
ACTGTGTTGAAACCTGGTGC+TGG 0.536826 2_2:-8718976 None:intergenic
ACCGGAAGATGAATCGGATG+AGG 0.537067 2_2:-8712868 None:intergenic
TCACTGGCAAGCGTCAGCAC+AGG 0.539371 2_2:-8716887 None:intergenic
AAAGGCACCTAAAGCTGCTA+AGG 0.539751 2_2:+8713376 Msa0235870:CDS
AAACATGAAGGGAATGTGGC+TGG 0.539849 2_2:+8719680 Msa0235870:CDS
TTGTACCAGTATCCCCAAGT+GGG 0.540353 2_2:+8719004 Msa0235870:CDS
TGAGGGTGATTGAGGTAATG+AGG 0.542427 2_2:-8712850 None:intergenic
TCCTGCTCCTTCTACGGCAA+AGG 0.542480 2_2:+8713358 Msa0235870:CDS
GAAGGCGCCTAAAGCTGATA+AGG 0.542783 2_2:+8717102 Msa0235870:CDS
TCTAGCTCCTGCTCCTGCTA+CGG 0.543999 2_2:+8717078 Msa0235870:CDS
TCATCTGAAGATGGTGATCA+GGG 0.549789 2_2:+8713404 Msa0235870:CDS
ACTTGGGGATACTGGTACAA+GGG 0.551131 2_2:-8719001 None:intergenic
GCCGGATACTTCAATTCCCT+CGG 0.551733 2_2:+8713056 Msa0235870:CDS
TCTAGCTCCTGCTCCTTCTA+CGG 0.551944 2_2:+8713352 Msa0235870:CDS
ACCATCATCAGGTGCAAGGA+TGG 0.555167 2_2:-8716741 None:intergenic
GGCAGGGGCAGGCTTTGCTG+CGG 0.556741 2_2:-8712787 None:intergenic
AACCCGGTTCAAACACAAGC+TGG 0.563882 2_2:+8719345 Msa0235870:CDS
TTAGGCTTAGAGAAGTCCAA+AGG 0.564111 2_2:-8713326 None:intergenic
CACTTGGGGATACTGGTACA+AGG 0.572766 2_2:-8719002 None:intergenic
AAGGATAGTTCATCTGAAGA+TGG 0.573134 2_2:+8713395 Msa0235870:CDS
CCAGCACCAGAAGCTTCTGC+AGG 0.575502 2_2:-8719651 None:intergenic
AAGGATAGTTCATCTGAAGA+TGG 0.575616 2_2:+8717121 Msa0235870:CDS
TGTGTAAACTGTTCCTGTAA+CGG 0.577811 2_2:-8719451 None:intergenic
CAACCAAATTAACTCACAGC+TGG 0.580266 2_2:+8712968 Msa0235870:CDS
TCTCCTTTAGAAACCGGTGC+AGG 0.582465 2_2:-8719558 None:intergenic
CGCCAGTTGTCATACTAACA+TGG 0.584465 2_2:-8719416 None:intergenic
AAGCAAGTCATCATCATCAA+AGG 0.585762 2_2:+8719602 Msa0235870:CDS
GAGCCTTGTGGAGATTGAAC+TGG 0.585816 2_2:-8718949 None:intergenic
AACATGGCTACCACCAGAAG+TGG 0.588263 2_2:-8719400 None:intergenic
TTTGGGATAATACTAGGGGT+GGG 0.590604 2_2:-8719030 None:intergenic
AAGCTGGTGATGATGCCAAA+CGG 0.591660 2_2:+8719361 Msa0235870:CDS
CAAGGCTCTACACCAGCACC+AGG 0.592984 2_2:+8718964 Msa0235870:CDS
CTGTTAATGCTACACTCACA+GGG 0.594530 2_2:+8713249 Msa0235870:CDS
CTGTTAATGCTACACTCACA+GGG 0.594530 2_2:+8716975 Msa0235870:CDS
ACCAATTTGATTAACCGTCA+AGG 0.597144 2_2:+8713455 Msa0235870:CDS
AGGTGGTAGTGGAATAGTAG+AGG 0.597674 2_2:-8718912 None:intergenic
AATTTGGTTGATGATTTGTG+TGG 0.598675 2_2:-8712955 None:intergenic
AATTTGGTTGATGATTTGTG+TGG 0.598675 2_2:-8716681 None:intergenic
ATAACCAGAAGGGCTATCAC+TGG 0.599004 2_2:-8716903 None:intergenic
TGGTGAGAGTTGTGCTGAGG+TGG 0.600028 2_2:-8718929 None:intergenic
TCATCAGATTCTAGCAGTGG+TGG 0.601527 2_2:+8719174 Msa0235870:CDS
GTTCGAGATTGAGATGAATG+AGG 0.603007 2_2:-8719307 None:intergenic
CACTGGCAAGCGTCAGCACA+GGG 0.603008 2_2:-8716886 None:intergenic
GCAGGAAGCACAAGATCAAG+AGG 0.606292 2_2:-8719516 None:intergenic
TAGGCTTAGAGAAGTCCAAA+GGG 0.607637 2_2:-8713325 None:intergenic
ATAACCAGAAGGGCTATCGC+TGG 0.608854 2_2:-8713177 None:intergenic
CCGGAAGATGAATCGGATGA+GGG 0.610068 2_2:-8712867 None:intergenic
AGGCACCATCATCAGGTGCA+AGG 0.615621 2_2:-8716745 None:intergenic
TCATCATCAGATTCTAGCAG+TGG 0.623234 2_2:+8719171 Msa0235870:CDS
AGGGGAACTGTGTTGAAACC+TGG 0.625049 2_2:-8718982 None:intergenic
ATTCAAACATGAAGGGAATG+TGG 0.627234 2_2:+8719676 Msa0235870:CDS
CTTCGACACCTTAACCAACC+CGG 0.629726 2_2:+8719329 Msa0235870:CDS
GCTGGTTATTCAAACATGAA+GGG 0.633452 2_2:+8719669 Msa0235870:CDS
CTTGTACCAGTATCCCCAAG+TGG 0.637536 2_2:+8719003 Msa0235870:CDS
CTTGGGGATACTGGTACAAG+GGG 0.638164 2_2:-8719000 None:intergenic
TGTACCAGTATCCCCAAGTG+GGG 0.638673 2_2:+8719005 Msa0235870:CDS
AGCTGTATATCAGGTTGACA+AGG 0.639083 2_2:+8719485 Msa0235870:CDS
ATTTGGATAATGTCTATGGA+TGG 0.646970 2_2:-8719057 None:intergenic
CATTCATATGATAACCAGAA+GGG 0.647322 2_2:-8713187 None:intergenic
CATTCATATGATAACCAGAA+GGG 0.647322 2_2:-8716913 None:intergenic
CTACTTTGTGTCTGTCACTG+AGG 0.651942 2_2:-8719260 None:intergenic
TTAGGCTTAGAGAAATCCAA+AGG 0.655336 2_2:-8717052 None:intergenic
GGTGCTGGTGTAGAGCCTTG+TGG 0.655706 2_2:-8718961 None:intergenic
GGATAAGCACTTTATCAACA+TGG 0.657983 2_2:-8713304 None:intergenic
CTTAATGTAACCACTTCTGG+TGG 0.658842 2_2:+8719390 Msa0235870:CDS
AGGGTGATTGAGGTAATGAG+GGG 0.663044 2_2:-8712848 None:intergenic
ACATTCATATGATAACCAGA+AGG 0.665867 2_2:-8713188 None:intergenic
ACATTCATATGATAACCAGA+AGG 0.665867 2_2:-8716914 None:intergenic
AGATGAATGAGGAAAGTGTG+TGG 0.666640 2_2:-8719296 None:intergenic
AACTGGTGAGAGTTGTGCTG+AGG 0.689213 2_2:-8718932 None:intergenic
TCACCAGTTCAATCTCCACA+AGG 0.696002 2_2:+8718946 Msa0235870:CDS
ACAATGTGAATATATCAACT+GGG 0.700774 2_2:+8713225 Msa0235870:CDS
ACAATGTGAATATATCAACT+GGG 0.700774 2_2:+8716951 Msa0235870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAATTTTCAATGTTTA+TGG - chr2_2:8715345-8715364 None:intergenic 10.0%
!! TTTAATATATACAGTTATAT+TGG + chr2_2:8717455-8717474 Msa0235870:intron 10.0%
!! ATAAAATTAATAAAAACTCA+TGG + chr2_2:8717504-8717523 Msa0235870:intron 10.0%
!! TAAAATTAATAAAAACTCAT+GGG + chr2_2:8717505-8717524 Msa0235870:intron 10.0%
!!! TATCTTTTAAAAGATTTATT+TGG + chr2_2:8717715-8717734 Msa0235870:intron 10.0%
!!! TTCAAATTTTACTTTGAATA+TGG + chr2_2:8713990-8714009 Msa0235870:intron 15.0%
!!! TTTCAATTTGATTTTAATGT+TGG - chr2_2:8714531-8714550 None:intergenic 15.0%
!! TGAAAATAAAATTGTAATGT+TGG - chr2_2:8714596-8714615 None:intergenic 15.0%
!! AAATACATTTATGAAAGAAA+AGG + chr2_2:8714736-8714755 Msa0235870:intron 15.0%
!! CTAATTAAATATATATCACT+TGG - chr2_2:8714835-8714854 None:intergenic 15.0%
!! TAGGATGATAAATTATAATT+TGG + chr2_2:8715983-8716002 Msa0235870:intron 15.0%
!!! TTTAAGCTTTTTATATATGT+TGG - chr2_2:8717649-8717668 None:intergenic 15.0%
!! CAAAATATACTATACATATT+TGG + chr2_2:8718093-8718112 Msa0235870:intron 15.0%
!! AAAATAATCATATAATGTAC+TGG + chr2_2:8718595-8718614 Msa0235870:intron 15.0%
!!! CAACATTTTTTATATCAATT+AGG - chr2_2:8718664-8718683 None:intergenic 15.0%
!!! AGCAAAAAAACATATTGTTT+TGG + chr2_2:8713693-8713712 Msa0235870:intron 20.0%
!!! AATTTTACTTTGAATATGGA+TGG + chr2_2:8713994-8714013 Msa0235870:intron 20.0%
!!! NNNNNNNNAATGGTTTGGTT+TGG - chr2_2:8714360-8714379 None:intergenic 20.0%
!!! TTAGTGTTTTACTTATATTG+CGG + chr2_2:8714851-8714870 Msa0235870:intron 20.0%
!!! GTTTTCTGATAAATGTAAAA+CGG + chr2_2:8715239-8715258 Msa0235870:intron 20.0%
!!! TGTTCTTAACTTATTTTATC+AGG + chr2_2:8715605-8715624 Msa0235870:intron 20.0%
!! ATATGATATGATGAAAAAGT+TGG + chr2_2:8716178-8716197 Msa0235870:intron 20.0%
!! ACTACTTAATAGTACTTAAT+TGG - chr2_2:8716301-8716320 None:intergenic 20.0%
!! TTTGGAAAGATATAAATGAT+AGG - chr2_2:8716377-8716396 None:intergenic 20.0%
!!! TTTTGTTTTTGTATTGTCAT+GGG + chr2_2:8717319-8717338 Msa0235870:intron 20.0%
!!! TTTTACATGAAGAAAAAATC+AGG - chr2_2:8717386-8717405 None:intergenic 20.0%
!! TTTATATATGTTGGAGTAAA+TGG - chr2_2:8717640-8717659 None:intergenic 20.0%
!! ATTAAAAAGAATTGAGCAAA+AGG - chr2_2:8717773-8717792 None:intergenic 20.0%
!!! TACCAAAACCTTTAAATTTT+TGG - chr2_2:8718177-8718196 None:intergenic 20.0%
!!! CTATAAATTATCTTCTAAAG+TGG - chr2_2:8718312-8718331 None:intergenic 20.0%
!!! TGATTATTTTCTTTTCTTTC+TGG + chr2_2:8718338-8718357 Msa0235870:intron 20.0%
!! TTCTTGTTTGTGATTGAATT+TGG - chr2_2:8712675-8712694 None:intergenic 25.0%
!!! TGAATGATTTAGCTTTTCTT+AGG - chr2_2:8712911-8712930 None:intergenic 25.0%
! AACAATGTGAATATATCAAC+TGG + chr2_2:8713224-8713243 Msa0235870:CDS 25.0%
! ACAATGTGAATATATCAACT+GGG + chr2_2:8713225-8713244 Msa0235870:CDS 25.0%
!!! ATGTTTGTGTCTTTTTTTGT+TGG + chr2_2:8713482-8713501 Msa0235870:CDS 25.0%
!!! GTTTTGTTTTGTATTGTCAT+GGG + chr2_2:8713601-8713620 Msa0235870:intron 25.0%
!! GCTTTTACATGAATAAAATC+AGG - chr2_2:8713676-8713695 None:intergenic 25.0%
!!! TTCTCTCTAAGACAAATAAA+AGG - chr2_2:8714047-8714066 None:intergenic 25.0%
! TATTTGTCTTAGAGAGAAAA+TGG + chr2_2:8714049-8714068 Msa0235870:intron 25.0%
!! TTTTTGTTCGCGTTTAAATT+TGG - chr2_2:8714645-8714664 None:intergenic 25.0%
!! TACATTCTGATTTTTCACAA+TGG + chr2_2:8715283-8715302 Msa0235870:intron 25.0%
!! ACATTCTGATTTTTCACAAT+GGG + chr2_2:8715284-8715303 Msa0235870:intron 25.0%
! AAGTATGTCCCAAAATTAAA+TGG + chr2_2:8715372-8715391 Msa0235870:intron 25.0%
!!! GGTAAACTCCATTTAATTTT+GGG - chr2_2:8715383-8715402 None:intergenic 25.0%
!!! TGGTAAACTCCATTTAATTT+TGG - chr2_2:8715384-8715403 None:intergenic 25.0%
!!! TGTTCTAAAGTTACTTTTTG+CGG + chr2_2:8715524-8715543 Msa0235870:intron 25.0%
!!! CTTAACTTATTTTATCAGGT+CGG + chr2_2:8715609-8715628 Msa0235870:intron 25.0%
!! AAGAAAATAGTATTGAAGAG+AGG - chr2_2:8715827-8715846 None:intergenic 25.0%
! TGGTTTATGTAGAAAGAAAA+GGG - chr2_2:8716211-8716230 None:intergenic 25.0%
! TTGGTTTATGTAGAAAGAAA+AGG - chr2_2:8716212-8716231 None:intergenic 25.0%
!!! CTAGTTAGTTTATCTGTTTT+TGG - chr2_2:8716395-8716414 None:intergenic 25.0%
! AACAATGTGAATATATCAAC+TGG + chr2_2:8713224-8713243 Msa0235870:CDS 25.0%
! ACAATGTGAATATATCAACT+GGG + chr2_2:8713225-8713244 Msa0235870:CDS 25.0%
! TGCTATATATCATGTTGATA+AGG + chr2_2:8717021-8717040 Msa0235870:intron 25.0%
!!! GTTTTGTTTTTGTATTGTCA+TGG + chr2_2:8717318-8717337 Msa0235870:intron 25.0%
!! TCATGTAAAAACAAAAGCAT+TGG + chr2_2:8717396-8717415 Msa0235870:intron 25.0%
! AATTAATAAAAACTCATGGG+AGG + chr2_2:8717508-8717527 Msa0235870:intron 25.0%
! ATTAATAAAAACTCATGGGA+GGG + chr2_2:8717509-8717528 Msa0235870:intron 25.0%
! TTATACGTTAATCAACACTA+AGG + chr2_2:8717594-8717613 Msa0235870:intron 25.0%
!! CTTTAACTCAAAACTCATTT+TGG + chr2_2:8717687-8717706 Msa0235870:intron 25.0%
! GTATAACATTGAGAAGATAA+AGG - chr2_2:8717742-8717761 None:intergenic 25.0%
! CATGCTTATGAATACAAATT+AGG - chr2_2:8717872-8717891 None:intergenic 25.0%
! TTAGAAATTAACCCAAAAAG+TGG - chr2_2:8717941-8717960 None:intergenic 25.0%
! TACTTGATATGTGATTTGAT+TGG + chr2_2:8717978-8717997 Msa0235870:intron 25.0%
!! GATGAAAAATTTTACACTCT+AGG + chr2_2:8718000-8718019 Msa0235870:intron 25.0%
! AGTCTTCACCAAAAATTTAA+AGG + chr2_2:8718166-8718185 Msa0235870:intron 25.0%
!! CACCAAAAATTTAAAGGTTT+TGG + chr2_2:8718172-8718191 Msa0235870:intron 25.0%
! ACAATCAATTATTTGATGCA+AGG - chr2_2:8718428-8718447 None:intergenic 25.0%
! TTATATGATTAAAGGAATGC+AGG - chr2_2:8718506-8718525 None:intergenic 25.0%
!! TTGAATGTTGATTAGTGTTT+AGG - chr2_2:8718823-8718842 None:intergenic 25.0%
!!! TTTTTGCTTTTTTGAGGATT+TGG - chr2_2:8719077-8719096 None:intergenic 25.0%
!!! AGAATCTTTTTGCTTTTTTG+AGG - chr2_2:8719083-8719102 None:intergenic 25.0%
!! AATTTGGTTGATGATTTGTG+TGG - chr2_2:8712958-8712977 None:intergenic 30.0%
CATTCATATGATAACCAGAA+GGG - chr2_2:8713190-8713209 None:intergenic 30.0%
ACATTCATATGATAACCAGA+AGG - chr2_2:8713191-8713210 None:intergenic 30.0%
!!! GGTTTTGTTTTGTATTGTCA+TGG + chr2_2:8713600-8713619 Msa0235870:intron 30.0%
TAGAATAGACCTTATAGTGA+AGG + chr2_2:8713782-8713801 Msa0235870:intron 30.0%
TGTTAGAAGAATCAGTAAAC+TGG - chr2_2:8713952-8713971 None:intergenic 30.0%
TACTTATTTATCTTGCGGTT+CGG - chr2_2:8714288-8714307 None:intergenic 30.0%
AGATAAATAAGTATGCGGTT+TGG + chr2_2:8714295-8714314 Msa0235870:intron 30.0%
!! NNNAATGGTTTGGTTTGGTT+TGG - chr2_2:8714355-8714374 None:intergenic 30.0%
! NNNNNNNNNGCGGTTTGGAT+TGG + chr2_2:8714463-8714482 Msa0235870:intron 30.0%
!!! ATTGGTTGATGTGGTTTTTT+TGG + chr2_2:8714486-8714505 Msa0235870:intron 30.0%
TAAATTTGGTCTACGTAGTT+GGG - chr2_2:8714631-8714650 None:intergenic 30.0%
TTAAATTTGGTCTACGTAGT+TGG - chr2_2:8714632-8714651 None:intergenic 30.0%
! GTTTTACTTATATTGCGGTT+TGG + chr2_2:8714856-8714875 Msa0235870:intron 30.0%
!!! GTTTTTCTATTGGATTGGTT+CGG + chr2_2:8715013-8715032 Msa0235870:intron 30.0%
GTAGACTGCTTATATAGATA+AGG - chr2_2:8715097-8715116 None:intergenic 30.0%
TCTGATAAATGTAAAACGGT+TGG + chr2_2:8715243-8715262 Msa0235870:intron 30.0%
GTGAAAAATCAGAATGTAGA+TGG - chr2_2:8715281-8715300 None:intergenic 30.0%
GAAACTAAGAAGAGAGAAAT+AGG + chr2_2:8715466-8715485 Msa0235870:intron 30.0%
GAATGTTCTTAAAGCTTATG+AGG - chr2_2:8715561-8715580 None:intergenic 30.0%
! TCGCAATTGAAGTATTTCTT+TGG + chr2_2:8715634-8715653 Msa0235870:intron 30.0%
!!! GTCATGATTTTTTTCTGCAT+TGG - chr2_2:8715719-8715738 None:intergenic 30.0%
!!! AATTTTAGAATCCTGCATTG+TGG + chr2_2:8715760-8715779 Msa0235870:intron 30.0%
TCTTAACTACTTACTGATCT+AGG + chr2_2:8715843-8715862 Msa0235870:intron 30.0%
GGTATAATGAACATAGTTTG+TGG + chr2_2:8715864-8715883 Msa0235870:intron 30.0%
TAACATCTAATCTGAGAGTA+TGG + chr2_2:8715888-8715907 Msa0235870:intron 30.0%
ATGAACTATGAAGCAAACAT+TGG - chr2_2:8715925-8715944 None:intergenic 30.0%
TTTGTCAGACAATGTCAATT+AGG + chr2_2:8715964-8715983 Msa0235870:intron 30.0%
ATCTGTCTAGGTATAAGAAA+AGG - chr2_2:8716015-8716034 None:intergenic 30.0%
TATGAAAATGTGGTTGGAAA+AGG - chr2_2:8716046-8716065 None:intergenic 30.0%
ATGTGTGTGATATGAAAATG+TGG - chr2_2:8716056-8716075 None:intergenic 30.0%
GGTTTATGTAGAAAGAAAAG+GGG - chr2_2:8716210-8716229 None:intergenic 30.0%
!!! GAATGGATTGCTTTTTATTG+AGG - chr2_2:8716254-8716273 None:intergenic 30.0%
AGATACGAACAGTTAATACT+AGG - chr2_2:8716448-8716467 None:intergenic 30.0%
!! AATTTGGTTGATGATTTGTG+TGG - chr2_2:8712958-8712977 None:intergenic 30.0%
CATTCATATGATAACCAGAA+GGG - chr2_2:8713190-8713209 None:intergenic 30.0%
ACATTCATATGATAACCAGA+AGG - chr2_2:8713191-8713210 None:intergenic 30.0%
TATTGTGTTCTTTACTCTCT+TGG + chr2_2:8717296-8717315 Msa0235870:intron 30.0%
!!! AACAAAAGCATTGGTTGTTT+TGG + chr2_2:8717405-8717424 Msa0235870:intron 30.0%
!! TTATATTGGCTTCTAGTAAC+TGG + chr2_2:8717469-8717488 Msa0235870:intron 30.0%
! AGATCAAATCTAAAACCTTG+CGG + chr2_2:8717547-8717566 Msa0235870:intron 30.0%
TAGCCGTTAACTATATTATG+TGG + chr2_2:8717805-8717824 Msa0235870:intron 30.0%
GTGCCACATAATATAGTTAA+CGG - chr2_2:8717811-8717830 None:intergenic 30.0%
! GTGTCATTGTATGATTTGAT+TGG - chr2_2:8717919-8717938 None:intergenic 30.0%
!!! ATACAATGACACCACTTTTT+GGG + chr2_2:8717927-8717946 Msa0235870:intron 30.0%
TTATAGAATTCAAGTGTGAG+TGG - chr2_2:8718261-8718280 None:intergenic 30.0%
!!! TTTCTTTTCTTTCTGGTTGA+TGG + chr2_2:8718345-8718364 Msa0235870:intron 30.0%
! ATGAAAGTATGGTTGGAAAA+GGG - chr2_2:8718401-8718420 None:intergenic 30.0%
! TATGAAAGTATGGTTGGAAA+AGG - chr2_2:8718402-8718421 None:intergenic 30.0%
! AGGATATATGAAAGTATGGT+TGG - chr2_2:8718408-8718427 None:intergenic 30.0%
TGCAAGGATATATGAAAGTA+TGG - chr2_2:8718412-8718431 None:intergenic 30.0%
GTAGCAAATAATAACTGTCA+GGG - chr2_2:8718642-8718661 None:intergenic 30.0%
! GTGAAAGGTTTAGTTTAGTT+AGG - chr2_2:8718704-8718723 None:intergenic 30.0%
! CTTTTATTGAGGATTCTCAT+TGG - chr2_2:8718726-8718745 None:intergenic 30.0%
TTTATTTGTGTCCTTATGTG+AGG - chr2_2:8718769-8718788 None:intergenic 30.0%
AATTAGTAGCTGTAGAATTG+AGG - chr2_2:8718887-8718906 None:intergenic 30.0%
!!! TGATTTTGGGATAATACTAG+GGG - chr2_2:8719037-8719056 None:intergenic 30.0%
!!! GTGATTTTGGGATAATACTA+GGG - chr2_2:8719038-8719057 None:intergenic 30.0%
ATTTGGATAATGTCTATGGA+TGG - chr2_2:8719060-8719079 None:intergenic 30.0%
! TAACTATTTGTGAGTTGAGT+TGG - chr2_2:8719146-8719165 None:intergenic 30.0%
! TACATTAAGTTGTAACCGTT+TGG - chr2_2:8719379-8719398 None:intergenic 30.0%
!!! GATTTTGATGATGTCTTGAC+CGG - chr2_2:8712889-8712908 None:intergenic 35.0%
!!! TTTGTGTGGTTTTGAGCAAA+CGG - chr2_2:8712944-8712963 None:intergenic 35.0%
ACTGTATCAGTTCTTTCTGT+TGG - chr2_2:8713088-8713107 None:intergenic 35.0%
CATATGAATGTGACTGCTTA+TGG + chr2_2:8713200-8713219 Msa0235870:CDS 35.0%
GGATAAGCACTTTATCAACA+TGG - chr2_2:8713307-8713326 None:intergenic 35.0%
! TGATAAAGTGCTTATCCCTT+TGG + chr2_2:8713310-8713329 Msa0235870:CDS 35.0%
AAGGATAGTTCATCTGAAGA+TGG + chr2_2:8713395-8713414 Msa0235870:CDS 35.0%
TTGACGGTTAATCAAATTGG+TGG - chr2_2:8713456-8713475 None:intergenic 35.0%
ACCAATTTGATTAACCGTCA+AGG + chr2_2:8713455-8713474 Msa0235870:CDS 35.0%
TCCTTGACGGTTAATCAAAT+TGG - chr2_2:8713459-8713478 None:intergenic 35.0%
ACACAAACATTGTTCCTTGA+CGG - chr2_2:8713472-8713491 None:intergenic 35.0%
!! ATGTGTTGGTCTTCATCAAA+TGG - chr2_2:8713531-8713550 None:intergenic 35.0%
ATGAAGACCAACACATTTGA+AGG + chr2_2:8713535-8713554 Msa0235870:intron 35.0%
ATAACAGCCTTCAAATGTGT+TGG - chr2_2:8713545-8713564 None:intergenic 35.0%
TTCTTGTGCTCTTTCTTTCT+TGG + chr2_2:8713579-8713598 Msa0235870:intron 35.0%
! TGTTTTGTATTGTCATGGGA+TGG + chr2_2:8713605-8713624 Msa0235870:intron 35.0%
! GTTTTGTATTGTCATGGGAT+GGG + chr2_2:8713606-8713625 Msa0235870:intron 35.0%
AGAGATAGTCCTTCACTATA+AGG - chr2_2:8713794-8713813 None:intergenic 35.0%
ATAGTGAAGGACTATCTCTT+TGG + chr2_2:8713795-8713814 Msa0235870:intron 35.0%
TTACTTTGAATATGGATGGC+TGG + chr2_2:8713998-8714017 Msa0235870:intron 35.0%
TTGACTACGAGAAGACATAA+TGG - chr2_2:8714181-8714200 None:intergenic 35.0%
CCGCATACTTATTTATCTTG+CGG - chr2_2:8714293-8714312 None:intergenic 35.0%
CCGCAAGATAAATAAGTATG+CGG + chr2_2:8714290-8714309 Msa0235870:intron 35.0%
!! AATAAGTATGCGGTTTGGTT+TGG + chr2_2:8714300-8714319 Msa0235870:intron 35.0%
!! TATTGCGGTTTGGTTTGATT+TGG + chr2_2:8714866-8714885 Msa0235870:intron 35.0%
!!! CAATTTTTTTCTCAACCGCA+TGG - chr2_2:8714929-8714948 None:intergenic 35.0%
! TTGCGGTTTTTCTATTGGAT+TGG + chr2_2:8715008-8715027 Msa0235870:intron 35.0%
GACTGCTTATATAGATAAGG+CGG - chr2_2:8715094-8715113 None:intergenic 35.0%
TTATGAACGAATTAGCTCCT+TGG + chr2_2:8715121-8715140 Msa0235870:intron 35.0%
GAGTCAAAGTATGCAATCAA+TGG - chr2_2:8715404-8715423 None:intergenic 35.0%
GATTGCATACTTTGACTCTA+CGG + chr2_2:8715406-8715425 Msa0235870:intron 35.0%
GTGACATTACAACAATGTGT+CGG - chr2_2:8715690-8715709 None:intergenic 35.0%
! CTAATCTGAGAGTATGGTAT+TGG + chr2_2:8715894-8715913 Msa0235870:intron 35.0%
!! CTGACAAAGATTTGGTGATA+TGG - chr2_2:8715952-8715971 None:intergenic 35.0%
GACATTGTCTGACAAAGATT+TGG - chr2_2:8715960-8715979 None:intergenic 35.0%
GTGTGATATGAAAATGTGGT+TGG - chr2_2:8716052-8716071 None:intergenic 35.0%
ATGCTAATTGATGCAAGGTT+TGG - chr2_2:8716231-8716250 None:intergenic 35.0%
!! TTAATTGGTGACCTTTTGTG+AGG - chr2_2:8716286-8716305 None:intergenic 35.0%
TAATGAAGGGACTAATGGTT+TGG - chr2_2:8716564-8716583 None:intergenic 35.0%
TCACTAGCTGTGAGTTAATT+TGG - chr2_2:8716700-8716719 None:intergenic 35.0%
CAGCTAGTGACAACAAAAAA+TGG + chr2_2:8716710-8716729 Msa0235870:CDS 35.0%
CTAGTGACAACAAAAAATGG+TGG + chr2_2:8716713-8716732 Msa0235870:CDS 35.0%
ACTGTATCAGTTCTTTCTGT+TGG - chr2_2:8713088-8713107 None:intergenic 35.0%
CATATGAATGTGACTGCTTA+TGG + chr2_2:8713200-8713219 Msa0235870:CDS 35.0%
! TGATAAGGTGCTTATTCCTT+TGG + chr2_2:8717036-8717055 Msa0235870:intron 35.0%
TTAGGCTTAGAGAAATCCAA+AGG - chr2_2:8717055-8717074 None:intergenic 35.0%
TTTGGATTTCTCTAAGCCTA+AGG + chr2_2:8717054-8717073 Msa0235870:CDS 35.0%
GAACTATCCTTATCAGCTTT+AGG - chr2_2:8717112-8717131 None:intergenic 35.0%
AAGGATAGTTCATCTGAAGA+TGG + chr2_2:8713395-8713414 Msa0235870:CDS 35.0%
ACACAAGTAATGTGCTTTGA+AGG - chr2_2:8717198-8717217 None:intergenic 35.0%
ATGAAGACCAACACATTTGA+AGG + chr2_2:8713535-8713554 Msa0235870:intron 35.0%
ATAACAGCCTTCAAATGTGT+TGG - chr2_2:8713545-8713564 None:intergenic 35.0%
TGGGAGGGTCTTAAAATTAT+CGG + chr2_2:8717524-8717543 Msa0235870:intron 35.0%
!! CATACAATGACACCACTTTT+TGG + chr2_2:8717926-8717945 Msa0235870:intron 35.0%
! TGAAAGTATGGTTGGAAAAG+GGG - chr2_2:8718400-8718419 None:intergenic 35.0%
GGTAGCAAATAATAACTGTC+AGG - chr2_2:8718643-8718662 None:intergenic 35.0%
!!! GGTGATTTTGGGATAATACT+AGG - chr2_2:8719039-8719058 None:intergenic 35.0%
! TGTCTATGGATGGTGATTTT+GGG - chr2_2:8719050-8719069 None:intergenic 35.0%
! ATGTCTATGGATGGTGATTT+TGG - chr2_2:8719051-8719070 None:intergenic 35.0%
GAGGATTTGGATAATGTCTA+TGG - chr2_2:8719064-8719083 None:intergenic 35.0%
!!! ACTGAGTTGTTTTGAGAAGA+CGG - chr2_2:8719116-8719135 None:intergenic 35.0%
!!! ACCTGGTTTGAGTTTTGAAA+AGG - chr2_2:8719229-8719248 None:intergenic 35.0%
CAACTTAATGTAACCACTTC+TGG + chr2_2:8719387-8719406 Msa0235870:CDS 35.0%
TGTGTAAACTGTTCCTGTAA+CGG - chr2_2:8719454-8719473 None:intergenic 35.0%
CAACAAACTAGCTGTATATC+AGG + chr2_2:8719476-8719495 Msa0235870:CDS 35.0%
! GATGAATCTCCTTTAGAAAC+CGG - chr2_2:8719567-8719586 None:intergenic 35.0%
AAGCAAGTCATCATCATCAA+AGG + chr2_2:8719602-8719621 Msa0235870:CDS 35.0%
! TGCTGGTTATTCAAACATGA+AGG + chr2_2:8719668-8719687 Msa0235870:CDS 35.0%
GCTGGTTATTCAAACATGAA+GGG + chr2_2:8719669-8719688 Msa0235870:CDS 35.0%
ATTCAAACATGAAGGGAATG+TGG + chr2_2:8719676-8719695 Msa0235870:CDS 35.0%
CAACCAAATTAACTCACAGC+TGG + chr2_2:8712968-8712987 Msa0235870:CDS 40.0%
TCACCAGCTGTGAGTTAATT+TGG - chr2_2:8712974-8712993 None:intergenic 40.0%
CAGCTGGTGACAACAAAAAA+CGG + chr2_2:8712984-8713003 Msa0235870:intron 40.0%
!! TTTTGATTCGCTTAGCAACC+CGG + chr2_2:8713142-8713161 Msa0235870:CDS 40.0%
CTGTTAATGCTACACTCACA+GGG + chr2_2:8713249-8713268 Msa0235870:CDS 40.0%
TAGGCTTAGAGAAGTCCAAA+GGG - chr2_2:8713328-8713347 None:intergenic 40.0%
TTAGGCTTAGAGAAGTCCAA+AGG - chr2_2:8713329-8713348 None:intergenic 40.0%
TTTGGACTTCTCTAAGCCTA+AGG + chr2_2:8713328-8713347 Msa0235870:CDS 40.0%
GAACTATCCTTAGCAGCTTT+AGG - chr2_2:8713386-8713405 None:intergenic 40.0%
TTCATCTGAAGATGGTGATC+AGG + chr2_2:8713403-8713422 Msa0235870:CDS 40.0%
TCATCTGAAGATGGTGATCA+GGG + chr2_2:8713404-8713423 Msa0235870:CDS 40.0%
GAGACAACTAAAGCTACTTC+TGG + chr2_2:8713428-8713447 Msa0235870:CDS 40.0%
TCAATAGTTGATCCTCAAGC+TGG + chr2_2:8713833-8713852 Msa0235870:intron 40.0%
AAAAAATGTCTGCCAGCTTG+AGG - chr2_2:8713848-8713867 None:intergenic 40.0%
GCACGAACTAGTTATAGAGA+AGG - chr2_2:8713890-8713909 None:intergenic 40.0%
GTTCGTGCTTAATTGTGCAA+TGG + chr2_2:8713902-8713921 Msa0235870:intron 40.0%
!! TGGTTTGGTTTGGTTTGGTT+CGG - chr2_2:8714350-8714369 None:intergenic 40.0%
! NNNNGCGGTTTGGATTGGAT+TGG + chr2_2:8714468-8714487 Msa0235870:intron 40.0%
!! TTGGATTGGATTGGTTGATG+TGG + chr2_2:8714477-8714496 Msa0235870:intron 40.0%
TACGTAGTTGGGAACATTGT+TGG - chr2_2:8714620-8714639 None:intergenic 40.0%
TCACTTGGACGAATACTCAT+AGG - chr2_2:8714820-8714839 None:intergenic 40.0%
!! CGGTTTGGTTTGATTTGGTT+CGG + chr2_2:8714871-8714890 Msa0235870:intron 40.0%
!! TTGGTTTGATTTGGTTCGGT+TGG + chr2_2:8714875-8714894 Msa0235870:intron 40.0%
! TTTTTCTCAACCGCATGGTT+TGG - chr2_2:8714924-8714943 None:intergenic 40.0%
!! GCATTTGGTTCGGATGTATT+CGG - chr2_2:8714954-8714973 None:intergenic 40.0%
GAATACATCCGAACCAAATG+CGG + chr2_2:8714953-8714972 Msa0235870:intron 40.0%
GCAAAAAACCGCATTTGGTT+CGG - chr2_2:8714964-8714983 None:intergenic 40.0%
!!! GAACCAAATGCGGTTTTTTG+CGG + chr2_2:8714963-8714982 Msa0235870:intron 40.0%
AAACCGCAAAAAACCGCATT+TGG - chr2_2:8714969-8714988 None:intergenic 40.0%
!!! AATGCGGTTTTTTGCGGTTT+TGG + chr2_2:8714969-8714988 Msa0235870:intron 40.0%
!!! GGTTTTTTGCGGTTTTGGTT+TGG + chr2_2:8714974-8714993 Msa0235870:intron 40.0%
!!! TTTGCGGTTTTGGTTTGGAT+TGG + chr2_2:8714979-8714998 Msa0235870:intron 40.0%
!!! GGTTTTGGTTTGGATTGGTT+CGG + chr2_2:8714984-8715003 Msa0235870:intron 40.0%
!! TCGGTTTGCGGTTTTTCTAT+TGG + chr2_2:8715003-8715022 Msa0235870:intron 40.0%
AGCACATAGAGCTTCAACTA+GGG - chr2_2:8715049-8715068 None:intergenic 40.0%
TAGCACATAGAGCTTCAACT+AGG - chr2_2:8715050-8715069 None:intergenic 40.0%
TGTGCTATAATGTTGAGCCA+AGG + chr2_2:8715063-8715082 Msa0235870:intron 40.0%
TGCTTCTTTCCTCTGCTATA+CGG - chr2_2:8715317-8715336 None:intergenic 40.0%
TCCTTTGTGGATCAGTTCTT+AGG - chr2_2:8715660-8715679 None:intergenic 40.0%
TATAAGAGCAACCACAATGC+AGG - chr2_2:8715774-8715793 None:intergenic 40.0%
!! TCTGAGAGTATGGTATTGGT+AGG + chr2_2:8715898-8715917 Msa0235870:intron 40.0%
AAGGAGCTATTGATCTGTCT+AGG - chr2_2:8716027-8716046 None:intergenic 40.0%
TGACAGTAGAGATTTGACAG+TGG - chr2_2:8716141-8716160 None:intergenic 40.0%
TGAGGATGCTAATTGATGCA+AGG - chr2_2:8716236-8716255 None:intergenic 40.0%
! TGACCTTTTGTGAGGAATGA+GGG - chr2_2:8716278-8716297 None:intergenic 40.0%
GAGTGTTTGATGTGTAGTGT+AGG - chr2_2:8716337-8716356 None:intergenic 40.0%
TGAGGTAATGAAGGGACTAA+TGG - chr2_2:8716569-8716588 None:intergenic 40.0%
AGGGTGATTGAGGTAATGAA+GGG - chr2_2:8716577-8716596 None:intergenic 40.0%
!!! TTTGTGTGGTTTTGAGCAAG+CGG - chr2_2:8716670-8716689 None:intergenic 40.0%
CTGTTAATGCTACACTCACA+GGG + chr2_2:8713249-8713268 Msa0235870:CDS 40.0%
TCATCTGAAGATGGTGATCA+AGG + chr2_2:8713404-8713423 Msa0235870:CDS 40.0%
GAGACAACTAAAGCTACTTC+TGG + chr2_2:8713428-8713447 Msa0235870:CDS 40.0%
TGGTCTTCATCAACTGAACA+TGG - chr2_2:8717242-8717261 None:intergenic 40.0%
!!! GCATTGGTTGTTTTGGTGAA+AGG + chr2_2:8717412-8717431 Msa0235870:intron 40.0%
CTCATATATCAAATGCCGCA+AGG - chr2_2:8717565-8717584 None:intergenic 40.0%
!! GGGGTATTGATCTGTATAGA+GGG - chr2_2:8718380-8718399 None:intergenic 40.0%
! GAAAGTATGGTTGGAAAAGG+GGG - chr2_2:8718399-8718418 None:intergenic 40.0%
GGACATAAGAAAGGTAAGCT+AGG - chr2_2:8718621-8718640 None:intergenic 40.0%
AACTGTCAGGGACATAAGAA+AGG - chr2_2:8718630-8718649 None:intergenic 40.0%
TGAGGATTCTCATTGGTGAA+AGG - chr2_2:8718719-8718738 None:intergenic 40.0%
!!! GAAGGGATTGGCTTTTATTG+AGG - chr2_2:8718737-8718756 None:intergenic 40.0%
TGTCCTTATGTGAGGAATGA+GGG - chr2_2:8718761-8718780 None:intergenic 40.0%
! TTTGGGATAATACTAGGGGT+GGG - chr2_2:8719033-8719052 None:intergenic 40.0%
!!! TTTTGGGATAATACTAGGGG+TGG - chr2_2:8719034-8719053 None:intergenic 40.0%
TCATCATCAGATTCTAGCAG+TGG + chr2_2:8719171-8719190 Msa0235870:CDS 40.0%
!! TTTGAAAAGGCACTGTCTTC+TGG - chr2_2:8719216-8719235 None:intergenic 40.0%
! GCCTTTTCAAAACTCAAACC+AGG + chr2_2:8719225-8719244 Msa0235870:CDS 40.0%
TACTTTGTGTCTGTCACTGA+GGG - chr2_2:8719262-8719281 None:intergenic 40.0%
! AGATGAATGAGGAAAGTGTG+TGG - chr2_2:8719299-8719318 None:intergenic 40.0%
GTTCGAGATTGAGATGAATG+AGG - chr2_2:8719310-8719329 None:intergenic 40.0%
CTTAATGTAACCACTTCTGG+TGG + chr2_2:8719390-8719409 Msa0235870:CDS 40.0%
AGCCATGTTAGTATGACAAC+TGG + chr2_2:8719414-8719433 Msa0235870:CDS 40.0%
!! AGCTGTATATCAGGTTGACA+AGG + chr2_2:8719485-8719504 Msa0235870:CDS 40.0%
!! GATGACTTGCTTCTATCATC+AGG - chr2_2:8719594-8719613 None:intergenic 40.0%
TGAGGTAATGAGGGGACTAA+TGG - chr2_2:8712843-8712862 None:intergenic 45.0%
AGGGTGATTGAGGTAATGAG+GGG - chr2_2:8712851-8712870 None:intergenic 45.0%
GAGGGTGATTGAGGTAATGA+GGG - chr2_2:8712852-8712871 None:intergenic 45.0%
TGAGGGTGATTGAGGTAATG+AGG - chr2_2:8712853-8712872 None:intergenic 45.0%
GTCTTGACCGGAAGATGAAT+CGG - chr2_2:8712877-8712896 None:intergenic 45.0%
CTGGTGACAACAAAAAACGG+TGG + chr2_2:8712987-8713006 Msa0235870:intron 45.0%
TTTGAGCTCGAGACGTAAAC+AGG - chr2_2:8713122-8713141 None:intergenic 45.0%
CCTGTGAGTGTAGCATTAAC+AGG - chr2_2:8713251-8713270 None:intergenic 45.0%
CCTGTTAATGCTACACTCAC+AGG + chr2_2:8713248-8713267 Msa0235870:CDS 45.0%
!! AAAGGCACCTAAAGCTGCTA+AGG + chr2_2:8713376-8713395 Msa0235870:CDS 45.0%
TGTATTGTCATGGGATGGGA+TGG + chr2_2:8713610-8713629 Msa0235870:intron 45.0%
GTATTGTCATGGGATGGGAT+GGG + chr2_2:8713611-8713630 Msa0235870:intron 45.0%
GTGAAGGACTATCTCTTTGG+AGG + chr2_2:8713798-8713817 Msa0235870:intron 45.0%
! AAGCGTTGTAGCAGTGTTGA+AGG + chr2_2:8714217-8714236 Msa0235870:intron 45.0%
! AGCGTTGTAGCAGTGTTGAA+GGG + chr2_2:8714218-8714237 Msa0235870:intron 45.0%
!! GTATGCGGTTTGGTTTGGTT+CGG + chr2_2:8714305-8714324 Msa0235870:intron 45.0%
!! GTTTGGATTGGTTCGGTTTG+CGG + chr2_2:8714991-8715010 Msa0235870:intron 45.0%
GCACATAGAGCTTCAACTAG+GGG - chr2_2:8715048-8715067 None:intergenic 45.0%
ACGAATTAGCTCCTTGGTGA+TGG + chr2_2:8715127-8715146 Msa0235870:intron 45.0%
CATAGATCGATCCATCACCA+AGG - chr2_2:8715141-8715160 None:intergenic 45.0%
TACGGAACAATGCGTCCTTT+AGG + chr2_2:8715424-8715443 Msa0235870:intron 45.0%
ACGGAACAATGCGTCCTTTA+GGG + chr2_2:8715425-8715444 Msa0235870:intron 45.0%
CACAACCAAACACACCCTAA+AGG - chr2_2:8715442-8715461 None:intergenic 45.0%
GCCTAAGAACTGATCCACAA+AGG + chr2_2:8715656-8715675 Msa0235870:intron 45.0%
TGTCGGAAGAGTTTCCTTTG+TGG - chr2_2:8715673-8715692 None:intergenic 45.0%
TTGTGAGGAATGAGGGAGAA+TGG - chr2_2:8716271-8716290 None:intergenic 45.0%
TCTCCCTCATTCCTCACAAA+AGG + chr2_2:8716272-8716291 Msa0235870:intron 45.0%
! GTGACCTTTTGTGAGGAATG+AGG - chr2_2:8716279-8716298 None:intergenic 45.0%
AGGTGATTGAGCTGAAGTAG+TGG - chr2_2:8716477-8716496 None:intergenic 45.0%
!! GAAGGGACTAATGGTTTGGT+TGG - chr2_2:8716560-8716579 None:intergenic 45.0%
GAGGGTGATTGAGGTAATGA+AGG - chr2_2:8712852-8712871 None:intergenic 45.0%
GAATCAGATGAGGGTGATTG+AGG - chr2_2:8716587-8716606 None:intergenic 45.0%
CCTGACGAAGAATCAGATGA+GGG - chr2_2:8716596-8716615 None:intergenic 45.0%
ACCTGACGAAGAATCAGATG+AGG - chr2_2:8716597-8716616 None:intergenic 45.0%
!! GAAGTATCCGGCTTTGAGTT+GGG - chr2_2:8716774-8716793 None:intergenic 45.0%
!! TGAAGTATCCGGCTTTGAGT+TGG - chr2_2:8716775-8716794 None:intergenic 45.0%
TTTGAGCTCGAGACGTAAAC+AGG - chr2_2:8713122-8713141 None:intergenic 45.0%
ATAACCAGAAGGGCTATCAC+TGG - chr2_2:8716906-8716925 None:intergenic 45.0%
CCTGTGAGTGTAGCATTAAC+AGG - chr2_2:8713251-8713270 None:intergenic 45.0%
CCTGTTAATGCTACACTCAC+AGG + chr2_2:8713248-8713267 Msa0235870:CDS 45.0%
GGTTGCTGCAGCAACAAAAA+GGG - chr2_2:8717221-8717240 None:intergenic 45.0%
TGGTTGCTGCAGCAACAAAA+AGG - chr2_2:8717222-8717241 None:intergenic 45.0%
TGAAGAAGACGACGAACACA+TGG - chr2_2:8717844-8717863 None:intergenic 45.0%
!! GGGGGTATTGATCTGTATAG+AGG - chr2_2:8718381-8718400 None:intergenic 45.0%
ATGTGAGGAATGAGGGAGAA+GGG - chr2_2:8718754-8718773 None:intergenic 45.0%
TATGTGAGGAATGAGGGAGA+AGG - chr2_2:8718755-8718774 None:intergenic 45.0%
TCTCCCTCATTCCTCACATA+AGG + chr2_2:8718755-8718774 Msa0235870:intron 45.0%
GTGTCCTTATGTGAGGAATG+AGG - chr2_2:8718762-8718781 None:intergenic 45.0%
!! AGGTGGTAGTGGAATAGTAG+AGG - chr2_2:8718915-8718934 None:intergenic 45.0%
TCACCAGTTCAATCTCCACA+AGG + chr2_2:8718946-8718965 Msa0235870:CDS 45.0%
ACTTGGGGATACTGGTACAA+GGG - chr2_2:8719004-8719023 None:intergenic 45.0%
TTGTACCAGTATCCCCAAGT+GGG + chr2_2:8719004-8719023 Msa0235870:CDS 45.0%
TTGGGATAATACTAGGGGTG+GGG - chr2_2:8719032-8719051 None:intergenic 45.0%
TCATCAGATTCTAGCAGTGG+TGG + chr2_2:8719174-8719193 Msa0235870:CDS 45.0%
CTGAGGGAATTAAGGAAACC+TGG - chr2_2:8719246-8719265 None:intergenic 45.0%
GTCTGTCACTGAGGGAATTA+AGG - chr2_2:8719254-8719273 None:intergenic 45.0%
CTACTTTGTGTCTGTCACTG+AGG - chr2_2:8719263-8719282 None:intergenic 45.0%
!! TGTTTGAACCGGGTTGGTTA+AGG - chr2_2:8719340-8719359 None:intergenic 45.0%
TCACCAGCTTGTGTTTGAAC+CGG - chr2_2:8719351-8719370 None:intergenic 45.0%
! AAGCTGGTGATGATGCCAAA+CGG + chr2_2:8719361-8719380 Msa0235870:CDS 45.0%
CGCCAGTTGTCATACTAACA+TGG - chr2_2:8719419-8719438 None:intergenic 45.0%
AAACATGAAGGGAATGTGGC+TGG + chr2_2:8719680-8719699 Msa0235870:CDS 45.0%
!!! ATGTGGCTGGCTCTTGTTTT+TGG + chr2_2:8719693-8719712 Msa0235870:CDS 45.0%
!!! TGTGGCTGGCTCTTGTTTTT+GGG + chr2_2:8719694-8719713 Msa0235870:CDS 45.0%
!! TTTGGGATGGTTTTGCTTGC+TGG + chr2_2:8719711-8719730 Msa0235870:CDS 45.0%
!! TAATATTATTATATGATTAA+AGG - chr2_2:8718514-8718533 None:intergenic 5.0%
AGCAGGTGATTGAGCTGTAG+TGG - chr2_2:8712754-8712773 None:intergenic 50.0%
!! GAGGGGACTAATGGTTTTGC+CGG - chr2_2:8712834-8712853 None:intergenic 50.0%
GAATCGGATGAGGGTGATTG+AGG - chr2_2:8712861-8712880 None:intergenic 50.0%
CCGGAAGATGAATCGGATGA+GGG - chr2_2:8712870-8712889 None:intergenic 50.0%
CCCTCATCCGATTCATCTTC+CGG + chr2_2:8712867-8712886 Msa0235870:CDS 50.0%
ACCGGAAGATGAATCGGATG+AGG - chr2_2:8712871-8712890 None:intergenic 50.0%
!! TGCGAAAAGGCACCATCATC+AGG - chr2_2:8713029-8713048 None:intergenic 50.0%
GCCGGATACTTCAATTCCCT+CGG + chr2_2:8713056-8713075 Msa0235870:CDS 50.0%
! GCCGAGGGAATTGAAGTATC+CGG - chr2_2:8713060-8713079 None:intergenic 50.0%
ATAACCAGAAGGGCTATCGC+TGG - chr2_2:8713180-8713199 None:intergenic 50.0%
! TCTAGCTCCTGCTCCTTCTA+CGG + chr2_2:8713352-8713371 Msa0235870:CDS 50.0%
TTAGGTGCCTTTGCCGTAGA+AGG - chr2_2:8713368-8713387 None:intergenic 50.0%
TGGATGGCTGGAATGACATC+TGG + chr2_2:8714010-8714029 Msa0235870:intron 50.0%
! GCGTTGTAGCAGTGTTGAAG+GGG + chr2_2:8714219-8714238 Msa0235870:intron 50.0%
!! CAGTGTTGAAGGGGTGTTCA+CGG + chr2_2:8714228-8714247 Msa0235870:intron 50.0%
!!! TGCGGTTTGGTTCGGTTTTG+AGG + chr2_2:8714251-8714270 Msa0235870:intron 50.0%
!! GCATGGTTTGGTTCGGTTTG+CGG - chr2_2:8714912-8714931 None:intergenic 50.0%
GCAAACCGAACCAAACCATG+CGG + chr2_2:8714911-8714930 Msa0235870:intron 50.0%
!! CTCAACCGCATGGTTTGGTT+CGG - chr2_2:8714919-8714938 None:intergenic 50.0%
!! TGCGTCCTTTAGGGTGTGTT+TGG + chr2_2:8715434-8715453 Msa0235870:intron 50.0%
CCCTCATCTGATTCTTCGTC+AGG + chr2_2:8716593-8716612 Msa0235870:intron 50.0%
ACCATCCTTGCACCTGATGA+TGG + chr2_2:8716740-8716759 Msa0235870:CDS 50.0%
ACCATCATCAGGTGCAAGGA+TGG - chr2_2:8716744-8716763 None:intergenic 50.0%
!! TGGGAAAAGGCACCATCATC+AGG - chr2_2:8716755-8716774 None:intergenic 50.0%
! GCCTTTTCCCAACTCAAAGC+CGG + chr2_2:8716764-8716783 Msa0235870:CDS 50.0%
!! TCCGGCTTTGAGTTGGGAAA+AGG - chr2_2:8716768-8716787 None:intergenic 50.0%
! GCCAAGGGAGTTGAAGTATC+CGG - chr2_2:8716786-8716805 None:intergenic 50.0%
TTTCTGTTGGCGTTCGCCAA+GGG - chr2_2:8716801-8716820 None:intergenic 50.0%
!! GAAGGCGCCTAAAGCTGATA+AGG + chr2_2:8717102-8717121 Msa0235870:CDS 50.0%
AGGAATGAGGGAGAAGGGAT+TGG - chr2_2:8718749-8718768 None:intergenic 50.0%
AACTGGTGAGAGTTGTGCTG+AGG - chr2_2:8718935-8718954 None:intergenic 50.0%
! GAGCCTTGTGGAGATTGAAC+TGG - chr2_2:8718952-8718971 None:intergenic 50.0%
ACTGTGTTGAAACCTGGTGC+TGG - chr2_2:8718979-8718998 None:intergenic 50.0%
AGGGGAACTGTGTTGAAACC+TGG - chr2_2:8718985-8719004 None:intergenic 50.0%
CTTGGGGATACTGGTACAAG+GGG - chr2_2:8719003-8719022 None:intergenic 50.0%
CACTTGGGGATACTGGTACA+AGG - chr2_2:8719005-8719024 None:intergenic 50.0%
CTTGTACCAGTATCCCCAAG+TGG + chr2_2:8719003-8719022 Msa0235870:CDS 50.0%
TGTACCAGTATCCCCAAGTG+GGG + chr2_2:8719005-8719024 Msa0235870:CDS 50.0%
TGGGATAATACTAGGGGTGG+GGG - chr2_2:8719031-8719050 None:intergenic 50.0%
CTTCGACACCTTAACCAACC+CGG + chr2_2:8719329-8719348 Msa0235870:CDS 50.0%
AGCTTGTGTTTGAACCGGGT+TGG - chr2_2:8719346-8719365 None:intergenic 50.0%
AACCCGGTTCAAACACAAGC+TGG + chr2_2:8719345-8719364 Msa0235870:CDS 50.0%
CACCAGCTTGTGTTTGAACC+GGG - chr2_2:8719350-8719369 None:intergenic 50.0%
AACATGGCTACCACCAGAAG+TGG - chr2_2:8719403-8719422 None:intergenic 50.0%
GCTGTTAACGCAACCGTTAC+AGG + chr2_2:8719438-8719457 Msa0235870:CDS 50.0%
! GCAGGAAGCACAAGATCAAG+AGG - chr2_2:8719519-8719538 None:intergenic 50.0%
! TCTCCTTTAGAAACCGGTGC+AGG - chr2_2:8719561-8719580 None:intergenic 50.0%
!!! GCTGGCTCTTGTTTTTGGGA+TGG + chr2_2:8719698-8719717 Msa0235870:CDS 50.0%
ACCATCCTCGCACCTGATGA+TGG + chr2_2:8713014-8713033 Msa0235870:intron 55.0%
ACCATCATCAGGTGCGAGGA+TGG - chr2_2:8713018-8713037 None:intergenic 55.0%
! GCCTTTTCGCAGCTCAAAGC+CGG + chr2_2:8713038-8713057 Msa0235870:intron 55.0%
!! TCCGGCTTTGAGCTGCGAAA+AGG - chr2_2:8713042-8713061 None:intergenic 55.0%
TTTCTGTTGGCGTTCGCCGA+GGG - chr2_2:8713075-8713094 None:intergenic 55.0%
TCCTGCTCCTTCTACGGCAA+AGG + chr2_2:8713358-8713377 Msa0235870:CDS 55.0%
!! TTGAAGGGGTGTTCACGGTG+CGG + chr2_2:8714233-8714252 Msa0235870:intron 55.0%
!! GTTCACGGTGCGGTTTGGTT+CGG + chr2_2:8714243-8714262 Msa0235870:intron 55.0%
TAGATAAGGCGGCGCATCCT+TGG - chr2_2:8715083-8715102 None:intergenic 55.0%
GGCTTGAGACCGTATAGCAG+AGG + chr2_2:8715305-8715324 Msa0235870:intron 55.0%
!! GGTTTGGTTGGTGCTGTTGC+AGG - chr2_2:8716548-8716567 None:intergenic 55.0%
AGGCACCATCATCAGGTGCA+AGG - chr2_2:8716748-8716767 None:intergenic 55.0%
GCCGGATACTTCAACTCCCT+TGG + chr2_2:8716782-8716801 Msa0235870:CDS 55.0%
CTTTCTGTTGGCGTTCGCCA+AGG - chr2_2:8716802-8716821 None:intergenic 55.0%
CTTGCCAGTGATAGCCCTTC+TGG + chr2_2:8716899-8716918 Msa0235870:CDS 55.0%
! TCTAGCTCCTGCTCCTGCTA+CGG + chr2_2:8717078-8717097 Msa0235870:CDS 55.0%
GAGTTGTGCTGAGGTGGTAG+TGG - chr2_2:8718926-8718945 None:intergenic 55.0%
TGGTGAGAGTTGTGCTGAGG+TGG - chr2_2:8718932-8718951 None:intergenic 55.0%
! GCAAGTGCAGGAGCTTTAGC+AGG - chr2_2:8719537-8719556 None:intergenic 55.0%
!! GCACCTGCACCGGTTTCTAA+AGG + chr2_2:8719555-8719574 Msa0235870:CDS 55.0%
GACTTGCCTGCAGAAGCTTC+TGG + chr2_2:8719645-8719664 Msa0235870:CDS 55.0%
GCAGGCTTTGCTGCGGCTTT+AGG - chr2_2:8712783-8712802 None:intergenic 60.0%
!!! GGTTTTGCCGGTGCTGTTGC+TGG - chr2_2:8712822-8712841 None:intergenic 60.0%
AGGCACCATCATCAGGTGCG+AGG - chr2_2:8713022-8713041 None:intergenic 60.0%
CTTTCTGTTGGCGTTCGCCG+AGG - chr2_2:8713076-8713095 None:intergenic 60.0%
TCGCTGGCAAGTGTCAGCAC+CGG - chr2_2:8713164-8713183 None:intergenic 60.0%
CTTGCCAGCGATAGCCCTTC+TGG + chr2_2:8713173-8713192 Msa0235870:CDS 60.0%
GGAGCAGGAGCTAGAGCCTT+AGG - chr2_2:8713347-8713366 None:intergenic 60.0%
GCCTTTGCCGTAGAAGGAGC+AGG - chr2_2:8713362-8713381 None:intergenic 60.0%
TGCTGCAGCACCTAAAGCCC+CGG + chr2_2:8716496-8716515 Msa0235870:intron 60.0%
TGTTGCAGGAGCTGGTGTGG+CGG - chr2_2:8716534-8716553 None:intergenic 60.0%
TGCTGTTGCAGGAGCTGGTG+TGG - chr2_2:8716537-8716556 None:intergenic 60.0%
!! GTTGGTGCTGTTGCAGGAGC+TGG - chr2_2:8716542-8716561 None:intergenic 60.0%
CACTGGCAAGCGTCAGCACA+GGG - chr2_2:8716889-8716908 None:intergenic 60.0%
TCACTGGCAAGCGTCAGCAC+AGG - chr2_2:8716890-8716909 None:intergenic 60.0%
GGAGCAGGAGCTAGAGCCTT+AGG - chr2_2:8713347-8713366 None:intergenic 60.0%
!! GGTGCTGGTGTAGAGCCTTG+TGG - chr2_2:8718964-8718983 None:intergenic 60.0%
CAAGGCTCTACACCAGCACC+AGG + chr2_2:8718964-8718983 Msa0235870:CDS 60.0%
TCCTGCACTTGCACCTGCAC+CGG + chr2_2:8719545-8719564 Msa0235870:CDS 60.0%
CCAGCACCAGAAGCTTCTGC+AGG - chr2_2:8719654-8719673 None:intergenic 60.0%
CCTGCAGAAGCTTCTGGTGC+TGG + chr2_2:8719651-8719670 Msa0235870:CDS 60.0%
!! GCGGCTTTAGGTGCTGCAGC+AGG - chr2_2:8712771-8712790 None:intergenic 65.0%
TTGCTGGAGCTGGCGTGGCA+GGG - chr2_2:8712806-8712825 None:intergenic 65.0%
TGCTGTTGCTGGAGCTGGCG+TGG - chr2_2:8712811-8712830 None:intergenic 65.0%
GCCAGCTCCAGCAACAGCAC+CGG + chr2_2:8712812-8712831 Msa0235870:CDS 65.0%
CGCTGGCAAGTGTCAGCACC+GGG - chr2_2:8713163-8713182 None:intergenic 65.0%
! GGGGTGTTCACGGTGCGGTT+TGG + chr2_2:8714238-8714257 Msa0235870:intron 65.0%
!! GGGGCTTTAGGTGCTGCAGC+AGG - chr2_2:8716497-8716516 None:intergenic 65.0%
! GCGGGTTTTGCCGGGGCTTT+AGG - chr2_2:8716509-8716528 None:intergenic 65.0%
TTGCAGGAGCTGGTGTGGCG+GGG - chr2_2:8716532-8716551 None:intergenic 65.0%
GTTGCAGGAGCTGGTGTGGC+GGG - chr2_2:8716533-8716552 None:intergenic 65.0%
TCCTGCTCCTGCTACGGCGA+AGG + chr2_2:8717084-8717103 Msa0235870:CDS 65.0%
TTAGGCGCCTTCGCCGTAGC+AGG - chr2_2:8717094-8717113 None:intergenic 65.0%
ACCGGTGCAGGTGCAAGTGC+AGG - chr2_2:8719549-8719568 None:intergenic 65.0%
GGCAGGGGCAGGCTTTGCTG+CGG - chr2_2:8712790-8712809 None:intergenic 70.0%
TGCTGGAGCTGGCGTGGCAG+GGG - chr2_2:8712805-8712824 None:intergenic 70.0%
GTTGCTGGAGCTGGCGTGGC+AGG - chr2_2:8712807-8712826 None:intergenic 70.0%
!! GCCGGTGCTGTTGCTGGAGC+TGG - chr2_2:8712816-8712835 None:intergenic 70.0%
TGCAGGAGCTGGTGTGGCGG+GGG - chr2_2:8716531-8716550 None:intergenic 70.0%
GCCTTCGCCGTAGCAGGAGC+AGG - chr2_2:8717088-8717107 None:intergenic 70.0%
GGGGCCCCACTTGGGGATAC+TGG - chr2_2:8719012-8719031 None:intergenic 70.0%
TAGGGGTGGGGGCCCCACTT+GGG - chr2_2:8719020-8719039 None:intergenic 70.0%
!! TGGCGGGGGCGGGTTTTGCC+GGG - chr2_2:8716517-8716536 None:intergenic 75.0%
!! GTGGCGGGGGCGGGTTTTGC+CGG - chr2_2:8716518-8716537 None:intergenic 75.0%
! AGGAGCTGGTGTGGCGGGGG+CGG - chr2_2:8716528-8716547 None:intergenic 75.0%
AGGGGTGGGGGCCCCACTTG+GGG - chr2_2:8719019-8719038 None:intergenic 75.0%
CTAGGGGTGGGGGCCCCACT+TGG - chr2_2:8719021-8719040 None:intergenic 75.0%
! GGAGCTGGCGTGGCAGGGGC+AGG - chr2_2:8712801-8712820 None:intergenic 80.0%
!!! GGCGGGGGCGGGTTTTGCCG+GGG - chr2_2:8716516-8716535 None:intergenic 80.0%
!! GGAGCTGGTGTGGCGGGGGC+GGG - chr2_2:8716527-8716546 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 8712653 8719749 8712653 ID=Msa0235870;Name=Msa0235870
chr2_2 mRNA 8712653 8719749 8712653 ID=Msa0235870-mRNA-1;Parent=Msa0235870;Name=Msa0235870-mRNA-1;_AED=0.11;_eAED=0.13;_QI=0|0|0|1|0|0|8|0|710
chr2_2 exon 8712653 8712725 8712653 ID=Msa0235870-mRNA-1:exon:3799;Parent=Msa0235870-mRNA-1
chr2_2 exon 8712760 8712989 8712760 ID=Msa0235870-mRNA-1:exon:3800;Parent=Msa0235870-mRNA-1
chr2_2 exon 8713050 8713274 8713050 ID=Msa0235870-mRNA-1:exon:3801;Parent=Msa0235870-mRNA-1
chr2_2 exon 8713290 8713503 8713290 ID=Msa0235870-mRNA-1:exon:3802;Parent=Msa0235870-mRNA-1
chr2_2 exon 8716615 8716831 8716615 ID=Msa0235870-mRNA-1:exon:3803;Parent=Msa0235870-mRNA-1
chr2_2 exon 8716883 8717033 8716883 ID=Msa0235870-mRNA-1:exon:3804;Parent=Msa0235870-mRNA-1
chr2_2 exon 8717043 8717213 8717043 ID=Msa0235870-mRNA-1:exon:3805;Parent=Msa0235870-mRNA-1
chr2_2 exon 8718898 8719749 8718898 ID=Msa0235870-mRNA-1:exon:3806;Parent=Msa0235870-mRNA-1
chr2_2 CDS 8712653 8712725 8712653 ID=Msa0235870-mRNA-1:cds;Parent=Msa0235870-mRNA-1
chr2_2 CDS 8712760 8712989 8712760 ID=Msa0235870-mRNA-1:cds;Parent=Msa0235870-mRNA-1
chr2_2 CDS 8713050 8713274 8713050 ID=Msa0235870-mRNA-1:cds;Parent=Msa0235870-mRNA-1
chr2_2 CDS 8713290 8713503 8713290 ID=Msa0235870-mRNA-1:cds;Parent=Msa0235870-mRNA-1
chr2_2 CDS 8716615 8716831 8716615 ID=Msa0235870-mRNA-1:cds;Parent=Msa0235870-mRNA-1
chr2_2 CDS 8716883 8717033 8716883 ID=Msa0235870-mRNA-1:cds;Parent=Msa0235870-mRNA-1
chr2_2 CDS 8717043 8717213 8717043 ID=Msa0235870-mRNA-1:cds;Parent=Msa0235870-mRNA-1
chr2_2 CDS 8718898 8719749 8718898 ID=Msa0235870-mRNA-1:cds;Parent=Msa0235870-mRNA-1
Gene Sequence

>Msa0235870

AAAAACTATCTAGTTACTTCCAAATTCAATCACAAACAAGAAGATGAAGCAAATCATCTTCTTCACACTCTTACTCAATCACCTGCTGCAGCACCTAAAGCCGCAGCAAAGCCTGCCCCTGCCACGCCAGCTCCAGCAACAGCACCGGCAAAACCATTAGTCCCCTCATTACCTCAATCACCCTCATCCGATTCATCTTCCGGTCAAGACATCATCAAAATCCTAAGAAAAGCTAAATCATTCAACACACTAATCCGTTTGCTCAAAACCACACAAATCATCAACCAAATTAACTCACAGCTGCTCAAAGCCGGATACTTCAATTCCCTCGGCGAACGCCAACAGAAAGAACTGATACAGTTTCATGTTCTTCCTGTTTACGTCTCGAGCTCAAATTTTGATTCGCTTAGCAACCCGGTGCTGACACTTGCCAGCGATAGCCCTTCTGGTTATCATATGAATGTGACTGCTTATGGAAACAATGTGAATATATCAACTGGGCCTGTTAATGCTACACTCACAGGGATTACACTTGCTATATACCATGTTGATAAAGTGCTTATCCCTTTGGACTTCTCTAAGCCTAAGGCTCTAGCTCCTGCTCCTTCTACGGCAAAGGCACCTAAAGCTGCTAAGGATAGTTCATCTGAAGATGGTGATCAGGGAGAGACAACTAAAGCTACTTCTGGTGCCACCAATTTGATTAACCGTCAAGGAACAATGTTTGTGTCTTTTTTTGTTGGTCAAGACATCATCAAAATCCTAAGAAAAGCTAAATCATTCAACACTCTAATCCGCTTGCTCAAAACCACACAAATCATCAACCAAATTAACTCACAGCTAGTGACAACAAAAAATGGTGGTTTAACCATCCTTGCACCTGATGATGGTGCCTTTTCCCAACTCAAAGCCGGATACTTCAACTCCCTTGGCGAACGCCAACAGAAAGAACTGATACACAACCCTGTGCTGACGCTTGCCAGTGATAGCCCTTCTGGTTATCATATGAATGTGACTGCTTATGGAAACAATGTGAATATATCAACTGGGCCTGTTAATGCTACACTCACAGGGATTGTTTATTCTGATAAGACGCTTGCTATATATCATGTGCTTATTCCTTTGGATTTCTCTAAGCCTAAGGCTCTAGCTCCTGCTCCTGCTACGGCGAAGGCGCCTAAAGCTGATAAGGATAGTTCATCTGAAGATGGTGATCAAGGAGAGACAACTAAAGCTACTTCTGGTGCAAACAATTTGATTCACCTTCAAAGCACATTACTTCTACTAATTCTAATCCTCTACTATTCCACTACCACCTCAGCACAACTCTCACCAGTTCAATCTCCACAAGGCTCTACACCAGCACCAGGTTTCAACACAGTTCCCCTTGTACCAGTATCCCCAAGTGGGGCCCCCACCCCTAGTATTATCCCAAAATCACCATCCATAGACATTATCCAAATCCTCAAAAAAGCAAAAAGATTCTCAGTTCTTATCCGTCTTCTCAAAACAACTCAGTTAATAAACCAACTCAACTCACAAATAGTTACATCATCATCATCAGATTCTAGCAGTGGTGGCTTAACTCTTTTTGCACCAGAAGACAGTGCCTTTTCAAAACTCAAACCAGGTTTCCTTAATTCCCTCAGTGACAGACACAAAGTAGAACTATTACAATTCCACACACTTTCCTCATTCATCTCAATCTCGAACTTCGACACCTTAACCAACCCGGTTCAAACACAAGCTGGTGATGATGCCAAACGGTTACAACTTAATGTAACCACTTCTGGTGGTAGCCATGTTAGTATGACAACTGGCGCTGTTAACGCAACCGTTACAGGAACAGTTTACACAGACAACAAACTAGCTGTATATCAGGTTGACAAGGTTCTTGTTCCTCTTGATCTTGTGCTTCCTGCTAAAGCTCCTGCACTTGCACCTGCACCGGTTTCTAAAGGAGATTCATCTAAGCCTGATGATAGAAGCAAGTCATCATCATCAAAGGATGATGATGATGAGAATAATGACTTGCCTGCAGAAGCTTCTGGTGCTGGTTATTCAAACATGAAGGGAATGTGGCTGGCTCTTGTTTTTGGGATGGTTTTGCTTGCTGGTGAAGCAATGCTATGA
Protein sequence

>Msa0235870

KNYLVTSKFNHKQEDEANHLLHTLTQSPAAAPKAAAKPAPATPAPATAPAKPLVPSLPQSPSSDSSSGQDIIKILRKAKSFNTLIRLLKTTQIINQINSQLLKAGYFNSLGERQQKELIQFHVLPVYVSSSNFDSLSNPVLTLASDSPSGYHMNVTAYGNNVNISTGPVNATLTGITLAIYHVDKVLIPLDFSKPKALAPAPSTAKAPKAAKDSSSEDGDQGETTKATSGATNLINRQGTMFVSFFVGQDIIKILRKAKSFNTLIRLLKTTQIINQINSQLVTTKNGGLTILAPDDGAFSQLKAGYFNSLGERQQKELIHNPVLTLASDSPSGYHMNVTAYGNNVNISTGPVNATLTGIVYSDKTLAIYHVLIPLDFSKPKALAPAPATAKAPKADKDSSSEDGDQGETTKATSGANNLIHLQSTLLLLILILYYSTTTSAQLSPVQSPQGSTPAPGFNTVPLVPVSPSGAPTPSIIPKSPSIDIIQILKKAKRFSVLIRLLKTTQLINQLNSQIVTSSSSDSSSGGLTLFAPEDSAFSKLKPGFLNSLSDRHKVELLQFHTLSSFISISNFDTLTNPVQTQAGDDAKRLQLNVTTSGGSHVSMTTGAVNATVTGTVYTDNKLAVYQVDKVLVPLDLVLPAKAPALAPAPVSKGDSSKPDDRSKSSSSKDDDDENNDLPAEASGAGYSNMKGMWLALVFGMVLLAGEAML*