AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1095590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095590 MtrunA17_Chr7g0223231 92.571 350 26 0 1 350 1 350 0.0 677
Msa1095590 MtrunA17_Chr7g0223241 86.571 350 47 0 1 350 1 350 0.0 633
Msa1095590 MtrunA17_Chr4g0046531 63.842 354 122 2 1 348 363 716 8.75e-163 472
Msa1095590 MtrunA17_Chr4g0046531 62.890 353 125 2 1 347 1 353 1.28e-162 471
Msa1095590 MtrunA17_Chr1g0188391 54.494 356 150 5 3 347 4 358 1.32e-138 397
Msa1095590 MtrunA17_Chr7g0219141 52.542 354 160 3 2 348 3 355 8.83e-132 380
Msa1095590 MtrunA17_Chr7g0219161 53.936 343 150 3 3 338 4 345 3.75e-131 379
Msa1095590 MtrunA17_Chr1g0188371 49.853 339 161 4 1 330 2 340 1.01e-116 343
Msa1095590 MtrunA17_Chr4g0046361 46.610 354 179 4 5 348 6 359 1.71e-112 331
Msa1095590 MtrunA17_Chr4g0014641 48.603 358 172 4 3 348 4 361 4.82e-112 330
Msa1095590 MtrunA17_Chr5g0432301 45.810 358 184 5 1 348 1 358 2.57e-111 328
Msa1095590 MtrunA17_Chr4g0014561 47.765 358 175 4 3 348 4 361 2.08e-110 326
Msa1095590 MtrunA17_Chr5g0432251 45.938 357 184 5 1 348 1 357 4.55e-110 325
Msa1095590 MtrunA17_Chr4g0046341 49.304 359 169 5 3 348 4 362 1.49e-109 324
Msa1095590 MtrunA17_Chr4g0014681 47.486 358 176 4 3 348 4 361 1.68e-109 324
Msa1095590 MtrunA17_Chr4g0040621 44.915 354 188 3 1 348 15 367 9.09e-108 320
Msa1095590 MtrunA17_Chr5g0432241 45.014 351 185 4 6 348 8 358 3.43e-107 318
Msa1095590 MtrunA17_Chr4g0014661 48.718 351 172 4 5 348 6 355 3.46e-105 312
Msa1095590 MtrunA17_Chr4g0014591 48.148 351 174 4 5 348 6 355 6.07e-98 294
Msa1095590 MtrunA17_Chr5g0432261 41.593 339 174 2 12 348 9 325 5.32e-94 283
Msa1095590 MtrunA17_Chr5g0432211 41.908 346 183 5 9 348 10 343 9.23e-94 283
Msa1095590 MtrunA17_Chr3g0121301 37.463 339 199 7 19 349 27 360 1.61e-73 231
Msa1095590 MtrunA17_Chr4g0014601 44.922 256 133 4 5 253 6 260 3.99e-71 222
Msa1095590 MtrunA17_Chr4g0022021 34.503 342 212 7 15 347 27 365 4.73e-58 192
Msa1095590 MtrunA17_Chr4g0021981 33.918 342 214 7 15 347 27 365 2.84e-57 190
Msa1095590 MtrunA17_Chr7g0219171 60.305 131 51 1 218 348 117 246 5.79e-50 167
Msa1095590 MtrunA17_Chr7g0219171 50.435 115 55 1 3 117 4 116 1.24e-31 119
Msa1095590 MtrunA17_Chr3g0128011 32.295 353 218 12 1 336 55 403 1.72e-44 157
Msa1095590 MtrunA17_Chr5g0448091 32.399 321 201 7 29 336 32 349 6.16e-44 155
Msa1095590 MtrunA17_Chr7g0218301 28.909 339 216 8 29 345 38 373 3.58e-41 148
Msa1095590 MtrunA17_Chr7g0218261 27.327 333 223 7 29 345 37 366 6.49e-41 147
Msa1095590 MtrunA17_Chr7g0218271 28.319 339 218 7 29 345 38 373 6.90e-41 147
Msa1095590 MtrunA17_Chr1g0200491 30.183 328 201 8 29 336 38 357 9.24e-41 147
Msa1095590 MtrunA17_Chr1g0163611 28.909 339 201 6 24 336 30 354 1.56e-40 146
Msa1095590 MtrunA17_Chr1g0163621 29.499 339 199 6 24 336 44 368 1.70e-40 146
Msa1095590 MtrunA17_Chr8g0367441 26.935 323 217 7 25 332 41 359 1.25e-38 141
Msa1095590 MtrunA17_Chr1g0163601 28.736 348 206 7 17 336 21 354 1.27e-38 141
Msa1095590 MtrunA17_Chr7g0218131 27.246 334 223 7 29 345 38 368 1.61e-38 140
Msa1095590 MtrunA17_Chr7g0276401 29.412 323 212 7 25 335 42 360 6.56e-38 139
Msa1095590 MtrunA17_Chr8g0367501 27.221 349 230 8 11 338 10 355 9.20e-38 139
Msa1095590 MtrunA17_Chr7g0218211 27.848 316 212 6 29 331 37 349 1.12e-37 138
Msa1095590 MtrunA17_Chr8g0367491 26.791 321 218 6 25 331 40 357 2.79e-37 137
Msa1095590 MtrunA17_Chr7g0218181 27.358 318 208 10 29 331 38 347 4.02e-37 137
Msa1095590 MtrunA17_Chr7g0276411 27.299 348 221 10 4 331 8 343 1.02e-35 133
Msa1095590 MtrunA17_Chr8g0345851 30.830 253 151 6 92 331 30 271 6.25e-35 129
Msa1095590 MtrunA17_Chr2g0307521 27.019 322 214 9 29 335 32 347 2.43e-34 129
Msa1095590 MtrunA17_Chr3g0085201 28.135 327 216 8 32 345 30 350 1.21e-33 127
Msa1095590 MtrunA17_Chr8g0367451 26.791 321 218 6 25 331 40 357 6.48e-33 125
Msa1095590 MtrunA17_Chr3g0085211 26.498 317 217 7 32 336 43 355 8.80e-33 125
Msa1095590 MtrunA17_Chr8g0367381 27.119 295 186 5 25 309 41 316 1.98e-32 123
Msa1095590 MtrunA17_Chr3g0130061 29.155 343 205 11 29 348 29 356 2.01e-32 124
Msa1095590 MtrunA17_Chr3g0130011 28.994 338 212 12 29 348 29 356 1.26e-31 122
Msa1095590 MtrunA17_Chr2g0314271 27.778 342 212 11 29 349 26 353 2.22e-30 118
Msa1095590 MtrunA17_Chr4g0014611 58.163 98 41 0 251 348 8 105 3.56e-23 92.8
Msa1095590 MtrunA17_Chr6g0482291 32.692 156 91 5 178 331 14 157 1.05e-18 82.8
Msa1095590 MtrunA17_Chr8g0367401 39.362 94 57 0 157 250 17 110 6.42e-18 79.3
Msa1095590 MtrunA17_Chr4g0014671 54.128 109 50 0 240 348 24 132 1.03e-17 78.6
Msa1095590 MtrunA17_Chr8g0367461 37.500 96 56 2 237 331 1 93 4.56e-17 76.3
Msa1095590 MtrunA17_Chr1g0170941 50.000 66 33 0 183 248 11 76 1.01e-15 71.2
Msa1095590 MtrunA17_Chr4g0011691 45.679 81 40 3 252 331 140 217 2.48e-13 68.9
Msa1095590 MtrunA17_Chr4g0011691 32.031 128 65 4 14 136 22 132 6.01e-11 62.0
Msa1095590 MtrunA17_Chr8g0367421 30.189 106 57 1 145 250 5 93 8.85e-12 62.0
Msa1095590 MtrunA17_Chr4g0014621 56.250 64 28 0 285 348 197 260 4.72e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095590 AT4G35150.1 35.735 347 171 10 14 346 12 320 1.12e-57 190
Msa1095590 AT4G35160.1 36.490 359 195 13 14 346 26 377 3.41e-53 180
Msa1095590 AT5G54160.1 32.530 332 207 9 29 348 33 359 1.03e-48 168
Msa1095590 AT1G51990.2 32.857 280 162 8 85 348 91 360 2.59e-40 145
Msa1095590 AT1G51990.1 30.523 344 203 12 29 348 29 360 2.91e-40 145
Msa1095590 AT3G53140.1 30.233 344 204 11 29 348 26 357 3.09e-35 132
Msa1095590 AT1G33030.1 29.430 316 206 8 29 331 20 331 5.18e-35 131
Msa1095590 AT1G77520.1 25.581 344 225 10 29 348 43 379 2.66e-31 122
Msa1095590 AT1G63140.2 28.125 352 218 11 23 348 37 379 9.38e-29 115
Msa1095590 AT1G63140.4 28.125 352 218 11 23 348 57 399 1.48e-28 114
Msa1095590 AT5G53810.1 30.058 346 208 12 29 348 39 376 2.24e-28 114
Msa1095590 AT1G62900.1 33.171 205 130 5 147 348 3 203 7.92e-27 105
Msa1095590 AT1G77530.1 27.746 346 215 11 29 348 43 379 1.10e-24 103
Msa1095590 AT5G37170.2 32.597 181 110 6 157 331 41 215 3.80e-22 94.0
Msa1095590 AT5G37170.1 32.597 181 110 6 157 331 141 315 5.67e-22 95.5
Msa1095590 AT1G21130.1 26.748 329 202 12 29 331 39 354 1.30e-21 95.1
Msa1095590 AT1G21100.1 27.356 329 200 13 29 331 39 354 1.91e-20 91.7
Msa1095590 AT1G76790.1 27.879 330 199 13 29 331 29 346 4.14e-20 90.5
Msa1095590 AT5G37170.3 32.749 171 104 6 167 331 2 167 6.20e-20 86.7
Msa1095590 AT1G21110.1 25.610 328 207 11 29 331 39 354 1.30e-19 89.4
Msa1095590 AT1G21120.1 25.305 328 211 10 29 334 39 354 1.28e-18 86.3
Msa1095590 AT1G21120.2 25.305 328 211 10 29 334 87 402 1.96e-18 86.3
Msa1095590 AT1G33030.2 26.496 234 159 6 29 250 20 252 2.93e-15 75.1
Msa1095590 AT1G33030.3 26.496 234 159 6 29 250 20 252 5.34e-15 74.7
Msa1095590 AT1G63140.1 26.531 245 152 6 29 250 63 302 2.03e-11 64.7

Find 55 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTTCATGCAACAAAATT+TGG 0.164531 7_3:+18576858 Msa1095590:CDS
TACAAAATATTTCCTATATT+TGG 0.180034 7_3:+18577896 Msa1095590:CDS
TAATAGGTTCGCCATGATTT+TGG 0.194358 7_3:-18576546 None:intergenic
TCACAGTGTCATGCGTTTAT+TGG 0.252473 7_3:+18576624 Msa1095590:CDS
ACAAGCTCAGGAAGAGTAAT+AGG 0.291026 7_3:-18576562 None:intergenic
CAATCTTTGAGACTACATTA+TGG 0.292380 7_3:+18576836 Msa1095590:CDS
GTTAATCCTTCTACCACATT+TGG 0.344057 7_3:-18577066 None:intergenic
AATCTTTGAGACTACATTAT+GGG 0.349412 7_3:+18576837 Msa1095590:CDS
AATGTGGTAGAAGGATTAAC+TGG 0.375933 7_3:+18577069 Msa1095590:CDS
TGATCATTGTTTAACTTCAA+TGG 0.378501 7_3:+18576738 Msa1095590:CDS
AATATTATCAATTGAGCAAA+TGG 0.394667 7_3:+18576794 Msa1095590:CDS
TTTAACTTCAATGGTTAAGA+TGG 0.403378 7_3:+18576747 Msa1095590:CDS
TTAACTTCTTTGGTTGATGT+TGG 0.411610 7_3:+18576970 Msa1095590:CDS
ACTTCTTTGGTTGATGTTGG+AGG 0.420904 7_3:+18576973 Msa1095590:CDS
GACCTTCCAAATGTGGTAGA+AGG 0.429597 7_3:+18577060 Msa1095590:CDS
ATTGTAAAGAAGCTGCTTCA+AGG 0.431595 7_3:+18577696 Msa1095590:CDS
AGTGACCTAAAACCAAATAT+AGG 0.433185 7_3:-18577908 None:intergenic
TACTCTTCCTGAGCTTGTCT+CGG 0.435364 7_3:+18576567 Msa1095590:CDS
CATGACACTGTGAACACAAC+CGG 0.451299 7_3:-18576614 None:intergenic
AGACATTGTGATAAATGAAA+AGG 0.464272 7_3:+18577748 Msa1095590:CDS
ATCAAGTGGGCTGTTGAACT+TGG 0.469328 7_3:+18576508 Msa1095590:CDS
GTTGATGTTGGAGGTGGAAC+CGG 0.470193 7_3:+18576982 Msa1095590:CDS
TAATATTTATCAACCATGGT+AGG 0.470597 7_3:-18576778 None:intergenic
AAGAAAATCATAACAGAAGC+AGG 0.478707 7_3:+18577863 Msa1095590:CDS
GTAAAATTGCATCAGCTTGA+GGG 0.481886 7_3:-18577137 None:intergenic
CATCAAAGCTTCTTGTGAAA+GGG 0.492312 7_3:+18576713 Msa1095590:CDS
AGTAAAATTGCATCAGCTTG+AGG 0.494453 7_3:-18577138 None:intergenic
TTCACAAGAAGCTTTGATGT+TGG 0.499286 7_3:-18576709 None:intergenic
TCTGAGAATGAGTGCAAAGC+AGG 0.503412 7_3:+18576421 Msa1095590:CDS
AATCTTCGCAATTGTCAAGA+TGG 0.505388 7_3:+18576657 Msa1095590:CDS
CTGCTTTGATATAACTATGA+TGG 0.505550 7_3:+18577802 Msa1095590:CDS
ACATCAAAGCTTCTTGTGAA+AGG 0.510825 7_3:+18576712 Msa1095590:CDS
CACGGTTAAAATTATTTGTG+AGG 0.517597 7_3:+18577008 Msa1095590:CDS
CGAAGAGCCGAGACAAGCTC+AGG 0.517956 7_3:-18576574 None:intergenic
AATATTTATCAACCATGGTA+GGG 0.522593 7_3:-18576777 None:intergenic
CCAGATATAATCCAAAATCA+TGG 0.539133 7_3:+18576535 Msa1095590:CDS
TGAGACCCGCGTCGATCAAG+TGG 0.547754 7_3:+18576494 Msa1095590:CDS
CGAATTCCAGAAGCAAAAGC+CGG 0.553157 7_3:+18576595 Msa1095590:CDS
TCTTTGGTTGATGTTGGAGG+TGG 0.553343 7_3:+18576976 Msa1095590:CDS
ATCCTTCTACCACATTTGGA+AGG 0.561989 7_3:-18577062 None:intergenic
AATTGCATCAGCTTGAGGGA+TGG 0.574477 7_3:-18577133 None:intergenic
TTGATAATATTTATCAACCA+TGG 0.592376 7_3:-18576782 None:intergenic
GAAGCTATTCAATGATGCTA+TGG 0.595485 7_3:+18576888 Msa1095590:CDS
ATTGAGCAAATGGACATCTA+CGG 0.596800 7_3:+18576804 Msa1095590:CDS
AGTGTTCGACCTTCCAAATG+TGG 0.610487 7_3:+18577053 Msa1095590:CDS
TGTCAAGATGGACGACAACA+AGG 0.611834 7_3:+18576669 Msa1095590:CDS
AGAGTGATTCTAATATGATG+AGG 0.631037 7_3:+18576911 Msa1095590:CDS
ACAGCCCACTTGATCGACGC+GGG 0.642324 7_3:-18576499 None:intergenic
GCTTCAAGGCAAAACAAAGG+AGG 0.643659 7_3:+18577710 Msa1095590:CDS
TGGAGGTGGAACCGGAAACA+CGG 0.653524 7_3:+18576990 Msa1095590:CDS
GATGGTAACAAACCCTACCA+TGG 0.661901 7_3:+18576765 Msa1095590:CDS
GCTGCTTCAAGGCAAAACAA+AGG 0.669930 7_3:+18577707 Msa1095590:CDS
GAGACCCGCGTCGATCAAGT+GGG 0.673235 7_3:+18576495 Msa1095590:CDS
GAGCAAATGGACATCTACGG+AGG 0.717467 7_3:+18576807 Msa1095590:CDS
AACAGCCCACTTGATCGACG+CGG 0.727407 7_3:-18576500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAAAACATAGATAATAA+GGG + chr7_3:18577246-18577265 Msa1095590:intron 15.0%
!! AAAAAAAAACATAGATAAGA+AGG + chr7_3:18577391-18577410 Msa1095590:intron 15.0%
!! AAAAAAAACATAGATAAGAA+GGG + chr7_3:18577392-18577411 Msa1095590:intron 15.0%
!! TTAAGCTAATTAATAATGTA+TGG - chr7_3:18577607-18577626 None:intergenic 15.0%
!! TACAAAATATTTCCTATATT+TGG + chr7_3:18577896-18577915 Msa1095590:CDS 15.0%
!! AAGTAAAACATAGATAATAA+GGG + chr7_3:18577246-18577265 Msa1095590:intron 15.0%
!! AAAAAAAAACATAGATAAGA+AGG + chr7_3:18577391-18577410 Msa1095590:intron 15.0%
!! AAAAAAAACATAGATAAGAA+GGG + chr7_3:18577392-18577411 Msa1095590:intron 15.0%
!! TTAAGCTAATTAATAATGTA+TGG - chr7_3:18577607-18577626 None:intergenic 15.0%
!! TACAAAATATTTCCTATATT+TGG + chr7_3:18577896-18577915 Msa1095590:CDS 15.0%
!!! TTGATAATATTTATCAACCA+TGG - chr7_3:18576785-18576804 None:intergenic 20.0%
!! AATATTATCAATTGAGCAAA+TGG + chr7_3:18576794-18576813 Msa1095590:CDS 20.0%
!!! AATAACTATCTAAGTTTTGT+CGG + chr7_3:18577093-18577112 Msa1095590:CDS 20.0%
!!! TATTATCTATGTTTTACTTC+AGG - chr7_3:18577245-18577264 None:intergenic 20.0%
!! GAAGTAAAACATAGATAATA+AGG + chr7_3:18577245-18577264 Msa1095590:intron 20.0%
!! AAAAAACTATGATACTATCT+TGG - chr7_3:18577465-18577484 None:intergenic 20.0%
!!! TAACAATACTTTGTTATGTA+TGG - chr7_3:18577582-18577601 None:intergenic 20.0%
!!! TATTTCCTATATTTGGTTTT+AGG + chr7_3:18577903-18577922 Msa1095590:CDS 20.0%
!!! TTGATAATATTTATCAACCA+TGG - chr7_3:18576785-18576804 None:intergenic 20.0%
!! AATATTATCAATTGAGCAAA+TGG + chr7_3:18576794-18576813 Msa1095590:CDS 20.0%
!!! AATAACTATCTAAGTTTTGT+CGG + chr7_3:18577093-18577112 Msa1095590:CDS 20.0%
!!! TATTATCTATGTTTTACTTC+AGG - chr7_3:18577245-18577264 None:intergenic 20.0%
!! GAAGTAAAACATAGATAATA+AGG + chr7_3:18577245-18577264 Msa1095590:intron 20.0%
!! AAAAAACTATGATACTATCT+TGG - chr7_3:18577465-18577484 None:intergenic 20.0%
!!! TAACAATACTTTGTTATGTA+TGG - chr7_3:18577582-18577601 None:intergenic 20.0%
!!! TATTTCCTATATTTGGTTTT+AGG + chr7_3:18577903-18577922 Msa1095590:CDS 20.0%
!! TGATCATTGTTTAACTTCAA+TGG + chr7_3:18576738-18576757 Msa1095590:CDS 25.0%
!! TTTAACTTCAATGGTTAAGA+TGG + chr7_3:18576747-18576766 Msa1095590:CDS 25.0%
! AATATTTATCAACCATGGTA+GGG - chr7_3:18576780-18576799 None:intergenic 25.0%
! TAATATTTATCAACCATGGT+AGG - chr7_3:18576781-18576800 None:intergenic 25.0%
!!! AATCTTTGAGACTACATTAT+GGG + chr7_3:18576837-18576856 Msa1095590:CDS 25.0%
!!! AATAATTTTAACCGTGTTTC+CGG - chr7_3:18577004-18577023 None:intergenic 25.0%
!!! AACACTATACATTTTAACGT+AGG - chr7_3:18577039-18577058 None:intergenic 25.0%
! AAGGTACGTATTAATTCAAA+GGG + chr7_3:18577162-18577181 Msa1095590:intron 25.0%
! TTAATTCAAAGGGAAATGAA+TGG + chr7_3:18577172-18577191 Msa1095590:intron 25.0%
!!! TTTCTTTTTAAGTAGCCTAA+CGG - chr7_3:18577373-18577392 None:intergenic 25.0%
!!! TTTCCTTTTCATTTTTGTAG+TGG + chr7_3:18577627-18577646 Msa1095590:intron 25.0%
!!! TTCCTTTTCATTTTTGTAGT+GGG + chr7_3:18577628-18577647 Msa1095590:intron 25.0%
! AGACATTGTGATAAATGAAA+AGG + chr7_3:18577748-18577767 Msa1095590:CDS 25.0%
!! TGATCATTGTTTAACTTCAA+TGG + chr7_3:18576738-18576757 Msa1095590:CDS 25.0%
!! TTTAACTTCAATGGTTAAGA+TGG + chr7_3:18576747-18576766 Msa1095590:CDS 25.0%
! AATATTTATCAACCATGGTA+GGG - chr7_3:18576780-18576799 None:intergenic 25.0%
! TAATATTTATCAACCATGGT+AGG - chr7_3:18576781-18576800 None:intergenic 25.0%
!!! AATCTTTGAGACTACATTAT+GGG + chr7_3:18576837-18576856 Msa1095590:CDS 25.0%
!!! AATAATTTTAACCGTGTTTC+CGG - chr7_3:18577004-18577023 None:intergenic 25.0%
!!! AACACTATACATTTTAACGT+AGG - chr7_3:18577039-18577058 None:intergenic 25.0%
! AAGGTACGTATTAATTCAAA+GGG + chr7_3:18577162-18577181 Msa1095590:intron 25.0%
! TTAATTCAAAGGGAAATGAA+TGG + chr7_3:18577172-18577191 Msa1095590:intron 25.0%
!!! TTTCTTTTTAAGTAGCCTAA+CGG - chr7_3:18577373-18577392 None:intergenic 25.0%
!!! TTTCCTTTTCATTTTTGTAG+TGG + chr7_3:18577627-18577646 Msa1095590:intron 25.0%
!!! TTCCTTTTCATTTTTGTAGT+GGG + chr7_3:18577628-18577647 Msa1095590:intron 25.0%
! AGACATTGTGATAAATGAAA+AGG + chr7_3:18577748-18577767 Msa1095590:CDS 25.0%
! CCATGATTTTGGATTATATC+TGG - chr7_3:18576538-18576557 None:intergenic 30.0%
CCAGATATAATCCAAAATCA+TGG + chr7_3:18576535-18576554 Msa1095590:CDS 30.0%
!! CAATCTTTGAGACTACATTA+TGG + chr7_3:18576836-18576855 Msa1095590:CDS 30.0%
GGATTTCATGCAACAAAATT+TGG + chr7_3:18576858-18576877 Msa1095590:CDS 30.0%
AGAGTGATTCTAATATGATG+AGG + chr7_3:18576911-18576930 Msa1095590:CDS 30.0%
! TGATTGCAAATCAGTTTTTG+AGG + chr7_3:18576945-18576964 Msa1095590:CDS 30.0%
! GATTGCAAATCAGTTTTTGA+GGG + chr7_3:18576946-18576965 Msa1095590:CDS 30.0%
! TTAACTTCTTTGGTTGATGT+TGG + chr7_3:18576970-18576989 Msa1095590:CDS 30.0%
CACGGTTAAAATTATTTGTG+AGG + chr7_3:18577008-18577027 Msa1095590:CDS 30.0%
CAAGGTACGTATTAATTCAA+AGG + chr7_3:18577161-18577180 Msa1095590:intron 30.0%
ATAGATTCGCAATTAGGTAA+AGG - chr7_3:18577209-18577228 None:intergenic 30.0%
CTAATTGCGAATCTATATGT+CGG + chr7_3:18577213-18577232 Msa1095590:intron 30.0%
TTGTTCCTAAGTTAAGTTCA+GGG - chr7_3:18577275-18577294 None:intergenic 30.0%
ATTGTTCCTAAGTTAAGTTC+AGG - chr7_3:18577276-18577295 None:intergenic 30.0%
!!! CTTTTTAAGATGAATACGTG+GGG - chr7_3:18577338-18577357 None:intergenic 30.0%
!!! CCTTTTTAAGATGAATACGT+GGG - chr7_3:18577339-18577358 None:intergenic 30.0%
!!! ACCTTTTTAAGATGAATACG+TGG - chr7_3:18577340-18577359 None:intergenic 30.0%
AACCCACTACAAAAATGAAA+AGG - chr7_3:18577633-18577652 None:intergenic 30.0%
CTGCTTTGATATAACTATGA+TGG + chr7_3:18577802-18577821 Msa1095590:CDS 30.0%
GAGAAAGAGATGAAAAAACA+TGG + chr7_3:18577840-18577859 Msa1095590:CDS 30.0%
AAGAAAATCATAACAGAAGC+AGG + chr7_3:18577863-18577882 Msa1095590:CDS 30.0%
AGTGACCTAAAACCAAATAT+AGG - chr7_3:18577911-18577930 None:intergenic 30.0%
! CCATGATTTTGGATTATATC+TGG - chr7_3:18576538-18576557 None:intergenic 30.0%
CCAGATATAATCCAAAATCA+TGG + chr7_3:18576535-18576554 Msa1095590:CDS 30.0%
!! CAATCTTTGAGACTACATTA+TGG + chr7_3:18576836-18576855 Msa1095590:CDS 30.0%
GGATTTCATGCAACAAAATT+TGG + chr7_3:18576858-18576877 Msa1095590:CDS 30.0%
AGAGTGATTCTAATATGATG+AGG + chr7_3:18576911-18576930 Msa1095590:CDS 30.0%
! TGATTGCAAATCAGTTTTTG+AGG + chr7_3:18576945-18576964 Msa1095590:CDS 30.0%
! GATTGCAAATCAGTTTTTGA+GGG + chr7_3:18576946-18576965 Msa1095590:CDS 30.0%
! TTAACTTCTTTGGTTGATGT+TGG + chr7_3:18576970-18576989 Msa1095590:CDS 30.0%
CACGGTTAAAATTATTTGTG+AGG + chr7_3:18577008-18577027 Msa1095590:CDS 30.0%
CAAGGTACGTATTAATTCAA+AGG + chr7_3:18577161-18577180 Msa1095590:intron 30.0%
ATAGATTCGCAATTAGGTAA+AGG - chr7_3:18577209-18577228 None:intergenic 30.0%
CTAATTGCGAATCTATATGT+CGG + chr7_3:18577213-18577232 Msa1095590:intron 30.0%
TTGTTCCTAAGTTAAGTTCA+GGG - chr7_3:18577275-18577294 None:intergenic 30.0%
ATTGTTCCTAAGTTAAGTTC+AGG - chr7_3:18577276-18577295 None:intergenic 30.0%
!!! CTTTTTAAGATGAATACGTG+GGG - chr7_3:18577338-18577357 None:intergenic 30.0%
!!! CCTTTTTAAGATGAATACGT+GGG - chr7_3:18577339-18577358 None:intergenic 30.0%
!!! ACCTTTTTAAGATGAATACG+TGG - chr7_3:18577340-18577359 None:intergenic 30.0%
AACCCACTACAAAAATGAAA+AGG - chr7_3:18577633-18577652 None:intergenic 30.0%
CTGCTTTGATATAACTATGA+TGG + chr7_3:18577802-18577821 Msa1095590:CDS 30.0%
GAGAAAGAGATGAAAAAACA+TGG + chr7_3:18577840-18577859 Msa1095590:CDS 30.0%
AAGAAAATCATAACAGAAGC+AGG + chr7_3:18577863-18577882 Msa1095590:CDS 30.0%
AGTGACCTAAAACCAAATAT+AGG - chr7_3:18577911-18577930 None:intergenic 30.0%
! TAATAGGTTCGCCATGATTT+TGG - chr7_3:18576549-18576568 None:intergenic 35.0%
AATCTTCGCAATTGTCAAGA+TGG + chr7_3:18576657-18576676 Msa1095590:CDS 35.0%
! TTCACAAGAAGCTTTGATGT+TGG - chr7_3:18576712-18576731 None:intergenic 35.0%
ACATCAAAGCTTCTTGTGAA+AGG + chr7_3:18576712-18576731 Msa1095590:CDS 35.0%
CATCAAAGCTTCTTGTGAAA+GGG + chr7_3:18576713-18576732 Msa1095590:CDS 35.0%
ATTGAGCAAATGGACATCTA+CGG + chr7_3:18576804-18576823 Msa1095590:CDS 35.0%
GAAGCTATTCAATGATGCTA+TGG + chr7_3:18576888-18576907 Msa1095590:CDS 35.0%
!! TTTTGAGGGCTTAACTTCTT+TGG + chr7_3:18576960-18576979 Msa1095590:CDS 35.0%
GTTAATCCTTCTACCACATT+TGG - chr7_3:18577069-18577088 None:intergenic 35.0%
AATGTGGTAGAAGGATTAAC+TGG + chr7_3:18577069-18577088 Msa1095590:CDS 35.0%
!! AACTATCTAAGTTTTGTCGG+CGG + chr7_3:18577096-18577115 Msa1095590:CDS 35.0%
GTAAAATTGCATCAGCTTGA+GGG - chr7_3:18577140-18577159 None:intergenic 35.0%
AGTAAAATTGCATCAGCTTG+AGG - chr7_3:18577141-18577160 None:intergenic 35.0%
! AGCTGATGCAATTTTACTCA+AGG + chr7_3:18577143-18577162 Msa1095590:CDS 35.0%
CGACATATAGATTCGCAATT+AGG - chr7_3:18577215-18577234 None:intergenic 35.0%
TGTTCCTAAGTTAAGTTCAG+GGG - chr7_3:18577274-18577293 None:intergenic 35.0%
TGCCTAATATATGCAGATGT+CGG + chr7_3:18577295-18577314 Msa1095590:intron 35.0%
CCCACGTATTCATCTTAAAA+AGG + chr7_3:18577336-18577355 Msa1095590:intron 35.0%
ATTGTAAAGAAGCTGCTTCA+AGG + chr7_3:18577696-18577715 Msa1095590:CDS 35.0%
! TAATAGGTTCGCCATGATTT+TGG - chr7_3:18576549-18576568 None:intergenic 35.0%
AATCTTCGCAATTGTCAAGA+TGG + chr7_3:18576657-18576676 Msa1095590:CDS 35.0%
! TTCACAAGAAGCTTTGATGT+TGG - chr7_3:18576712-18576731 None:intergenic 35.0%
ACATCAAAGCTTCTTGTGAA+AGG + chr7_3:18576712-18576731 Msa1095590:CDS 35.0%
CATCAAAGCTTCTTGTGAAA+GGG + chr7_3:18576713-18576732 Msa1095590:CDS 35.0%
ATTGAGCAAATGGACATCTA+CGG + chr7_3:18576804-18576823 Msa1095590:CDS 35.0%
GAAGCTATTCAATGATGCTA+TGG + chr7_3:18576888-18576907 Msa1095590:CDS 35.0%
!! TTTTGAGGGCTTAACTTCTT+TGG + chr7_3:18576960-18576979 Msa1095590:CDS 35.0%
GTTAATCCTTCTACCACATT+TGG - chr7_3:18577069-18577088 None:intergenic 35.0%
AATGTGGTAGAAGGATTAAC+TGG + chr7_3:18577069-18577088 Msa1095590:CDS 35.0%
!! AACTATCTAAGTTTTGTCGG+CGG + chr7_3:18577096-18577115 Msa1095590:CDS 35.0%
GTAAAATTGCATCAGCTTGA+GGG - chr7_3:18577140-18577159 None:intergenic 35.0%
AGTAAAATTGCATCAGCTTG+AGG - chr7_3:18577141-18577160 None:intergenic 35.0%
! AGCTGATGCAATTTTACTCA+AGG + chr7_3:18577143-18577162 Msa1095590:CDS 35.0%
CGACATATAGATTCGCAATT+AGG - chr7_3:18577215-18577234 None:intergenic 35.0%
TGTTCCTAAGTTAAGTTCAG+GGG - chr7_3:18577274-18577293 None:intergenic 35.0%
TGCCTAATATATGCAGATGT+CGG + chr7_3:18577295-18577314 Msa1095590:intron 35.0%
CCCACGTATTCATCTTAAAA+AGG + chr7_3:18577336-18577355 Msa1095590:intron 35.0%
ATTGTAAAGAAGCTGCTTCA+AGG + chr7_3:18577696-18577715 Msa1095590:CDS 35.0%
ACAAGCTCAGGAAGAGTAAT+AGG - chr7_3:18576565-18576584 None:intergenic 40.0%
TCACAGTGTCATGCGTTTAT+TGG + chr7_3:18576624-18576643 Msa1095590:CDS 40.0%
! ACTTCTTTGGTTGATGTTGG+AGG + chr7_3:18576973-18576992 Msa1095590:CDS 40.0%
ATCCTTCTACCACATTTGGA+AGG - chr7_3:18577065-18577084 None:intergenic 40.0%
CTCCGACATCTGCATATATT+AGG - chr7_3:18577300-18577319 None:intergenic 40.0%
!! AAGGTGAATTTCTAGCCGTT+AGG + chr7_3:18577355-18577374 Msa1095590:intron 40.0%
!!! TGTAGTGGGTTTTGCATAAC+TGG + chr7_3:18577642-18577661 Msa1095590:intron 40.0%
ACAAGCTCAGGAAGAGTAAT+AGG - chr7_3:18576565-18576584 None:intergenic 40.0%
TCACAGTGTCATGCGTTTAT+TGG + chr7_3:18576624-18576643 Msa1095590:CDS 40.0%
! ACTTCTTTGGTTGATGTTGG+AGG + chr7_3:18576973-18576992 Msa1095590:CDS 40.0%
ATCCTTCTACCACATTTGGA+AGG - chr7_3:18577065-18577084 None:intergenic 40.0%
CTCCGACATCTGCATATATT+AGG - chr7_3:18577300-18577319 None:intergenic 40.0%
!! AAGGTGAATTTCTAGCCGTT+AGG + chr7_3:18577355-18577374 Msa1095590:intron 40.0%
!!! TGTAGTGGGTTTTGCATAAC+TGG + chr7_3:18577642-18577661 Msa1095590:intron 40.0%
TCTGAGAATGAGTGCAAAGC+AGG + chr7_3:18576421-18576440 Msa1095590:CDS 45.0%
!! ATCAAGTGGGCTGTTGAACT+TGG + chr7_3:18576508-18576527 Msa1095590:CDS 45.0%
TACTCTTCCTGAGCTTGTCT+CGG + chr7_3:18576567-18576586 Msa1095590:CDS 45.0%
CGAATTCCAGAAGCAAAAGC+CGG + chr7_3:18576595-18576614 Msa1095590:CDS 45.0%
CATGACACTGTGAACACAAC+CGG - chr7_3:18576617-18576636 None:intergenic 45.0%
TGTCAAGATGGACGACAACA+AGG + chr7_3:18576669-18576688 Msa1095590:CDS 45.0%
GATGGTAACAAACCCTACCA+TGG + chr7_3:18576765-18576784 Msa1095590:CDS 45.0%
! TCTTTGGTTGATGTTGGAGG+TGG + chr7_3:18576976-18576995 Msa1095590:CDS 45.0%
AGTGTTCGACCTTCCAAATG+TGG + chr7_3:18577053-18577072 Msa1095590:CDS 45.0%
GACCTTCCAAATGTGGTAGA+AGG + chr7_3:18577060-18577079 Msa1095590:CDS 45.0%
AATTGCATCAGCTTGAGGGA+TGG - chr7_3:18577136-18577155 None:intergenic 45.0%
GGTACCCCTGAACTTAACTT+AGG + chr7_3:18577267-18577286 Msa1095590:intron 45.0%
GCTGCTTCAAGGCAAAACAA+AGG + chr7_3:18577707-18577726 Msa1095590:CDS 45.0%
GCTTCAAGGCAAAACAAAGG+AGG + chr7_3:18577710-18577729 Msa1095590:CDS 45.0%
TCTGAGAATGAGTGCAAAGC+AGG + chr7_3:18576421-18576440 Msa1095590:CDS 45.0%
!! ATCAAGTGGGCTGTTGAACT+TGG + chr7_3:18576508-18576527 Msa1095590:CDS 45.0%
TACTCTTCCTGAGCTTGTCT+CGG + chr7_3:18576567-18576586 Msa1095590:CDS 45.0%
CGAATTCCAGAAGCAAAAGC+CGG + chr7_3:18576595-18576614 Msa1095590:CDS 45.0%
CATGACACTGTGAACACAAC+CGG - chr7_3:18576617-18576636 None:intergenic 45.0%
TGTCAAGATGGACGACAACA+AGG + chr7_3:18576669-18576688 Msa1095590:CDS 45.0%
GATGGTAACAAACCCTACCA+TGG + chr7_3:18576765-18576784 Msa1095590:CDS 45.0%
! TCTTTGGTTGATGTTGGAGG+TGG + chr7_3:18576976-18576995 Msa1095590:CDS 45.0%
AGTGTTCGACCTTCCAAATG+TGG + chr7_3:18577053-18577072 Msa1095590:CDS 45.0%
GACCTTCCAAATGTGGTAGA+AGG + chr7_3:18577060-18577079 Msa1095590:CDS 45.0%
AATTGCATCAGCTTGAGGGA+TGG - chr7_3:18577136-18577155 None:intergenic 45.0%
GGTACCCCTGAACTTAACTT+AGG + chr7_3:18577267-18577286 Msa1095590:intron 45.0%
GCTGCTTCAAGGCAAAACAA+AGG + chr7_3:18577707-18577726 Msa1095590:CDS 45.0%
GCTTCAAGGCAAAACAAAGG+AGG + chr7_3:18577710-18577729 Msa1095590:CDS 45.0%
!!! TTTTATTTTATTTTTTTTGA+AGG + chr7_3:18577483-18577502 Msa1095590:intron 5.0%
!!! TTTATTTTATTTTTTTTGAA+GGG + chr7_3:18577484-18577503 Msa1095590:intron 5.0%
!!! TTTTATTTTATTTTTTTTGA+AGG + chr7_3:18577483-18577502 Msa1095590:intron 5.0%
!!! TTTATTTTATTTTTTTTGAA+GGG + chr7_3:18577484-18577503 Msa1095590:intron 5.0%
!! ACACAACCGGCTTTTGCTTC+TGG - chr7_3:18576604-18576623 None:intergenic 50.0%
GAGCAAATGGACATCTACGG+AGG + chr7_3:18576807-18576826 Msa1095590:CDS 50.0%
GTTGATGTTGGAGGTGGAAC+CGG + chr7_3:18576982-18577001 Msa1095590:CDS 50.0%
AGATGTCGGAGTTTGAACCC+TGG + chr7_3:18577309-18577328 Msa1095590:intron 50.0%
ATGAATACGTGGGGTGACCA+GGG - chr7_3:18577329-18577348 None:intergenic 50.0%
!! ACACAACCGGCTTTTGCTTC+TGG - chr7_3:18576604-18576623 None:intergenic 50.0%
GAGCAAATGGACATCTACGG+AGG + chr7_3:18576807-18576826 Msa1095590:CDS 50.0%
GTTGATGTTGGAGGTGGAAC+CGG + chr7_3:18576982-18577001 Msa1095590:CDS 50.0%
AGATGTCGGAGTTTGAACCC+TGG + chr7_3:18577309-18577328 Msa1095590:intron 50.0%
ATGAATACGTGGGGTGACCA+GGG - chr7_3:18577329-18577348 None:intergenic 50.0%
AACAGCCCACTTGATCGACG+CGG - chr7_3:18576503-18576522 None:intergenic 55.0%
TGGAGGTGGAACCGGAAACA+CGG + chr7_3:18576990-18577009 Msa1095590:CDS 55.0%
GATGAATACGTGGGGTGACC+AGG - chr7_3:18577330-18577349 None:intergenic 55.0%
AACAGCCCACTTGATCGACG+CGG - chr7_3:18576503-18576522 None:intergenic 55.0%
TGGAGGTGGAACCGGAAACA+CGG + chr7_3:18576990-18577009 Msa1095590:CDS 55.0%
GATGAATACGTGGGGTGACC+AGG - chr7_3:18577330-18577349 None:intergenic 55.0%
! TGAGACCCGCGTCGATCAAG+TGG + chr7_3:18576494-18576513 Msa1095590:CDS 60.0%
! GAGACCCGCGTCGATCAAGT+GGG + chr7_3:18576495-18576514 Msa1095590:CDS 60.0%
ACAGCCCACTTGATCGACGC+GGG - chr7_3:18576502-18576521 None:intergenic 60.0%
CGAAGAGCCGAGACAAGCTC+AGG - chr7_3:18576577-18576596 None:intergenic 60.0%
! TGAGACCCGCGTCGATCAAG+TGG + chr7_3:18576494-18576513 Msa1095590:CDS 60.0%
! GAGACCCGCGTCGATCAAGT+GGG + chr7_3:18576495-18576514 Msa1095590:CDS 60.0%
ACAGCCCACTTGATCGACGC+GGG - chr7_3:18576502-18576521 None:intergenic 60.0%
CGAAGAGCCGAGACAAGCTC+AGG - chr7_3:18576577-18576596 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 18576415 18577949 18576415 ID=Msa1095590;Name=Msa1095590
chr7_3 mRNA 18576415 18577949 18576415 ID=Msa1095590-mRNA-1;Parent=Msa1095590;Name=Msa1095590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|350
chr7_3 exon 18576415 18577164 18576415 ID=Msa1095590-mRNA-1:exon:4002;Parent=Msa1095590-mRNA-1
chr7_3 exon 18577647 18577949 18577647 ID=Msa1095590-mRNA-1:exon:4003;Parent=Msa1095590-mRNA-1
chr7_3 CDS 18576415 18577164 18576415 ID=Msa1095590-mRNA-1:cds;Parent=Msa1095590-mRNA-1
chr7_3 CDS 18577647 18577949 18577647 ID=Msa1095590-mRNA-1:cds;Parent=Msa1095590-mRNA-1
Gene Sequence

>Msa1095590

ATGGGTTCTGAGAATGAGTGCAAAGCAGGTGAGCTCTTTGAAGCTCAAGCTCACTTGTACAATCAGTTATTCAGTTTCATGAGACCCGCGTCGATCAAGTGGGCTGTTGAACTTGGCATACCAGATATAATCCAAAATCATGGCGAACCTATTACTCTTCCTGAGCTTGTCTCGGCTCTTCGAATTCCAGAAGCAAAAGCCGGTTGTGTTCACAGTGTCATGCGTTTATTGGCGCACAATAAAATCTTCGCAATTGTCAAGATGGACGACAACAAGGAAGCATATGCTCTTTCTCCAACATCAAAGCTTCTTGTGAAAGGGACTGATCATTGTTTAACTTCAATGGTTAAGATGGTAACAAACCCTACCATGGTTGATAAATATTATCAATTGAGCAAATGGACATCTACGGAGGATCTCACAATCTTTGAGACTACATTATGGGATTTCATGCAACAAAATTTGGCTTATGCGAAGCTATTCAATGATGCTATGGAGAGTGATTCTAATATGATGAGGTTTGCAATGAGTGATTGCAAATCAGTTTTTGAGGGCTTAACTTCTTTGGTTGATGTTGGAGGTGGAACCGGAAACACGGTTAAAATTATTTGTGAGGCGTTTCCTACGTTAAAATGTATAGTGTTCGACCTTCCAAATGTGGTAGAAGGATTAACTGGAAATAACTATCTAAGTTTTGTCGGCGGAGATATGTTTGAATCCATCCCTCAAGCTGATGCAATTTTACTCAAGTGGGTTTTGCATAACTGGAATGATGATGAATGTGTAAAGATACTTAAAAATTGTAAAGAAGCTGCTTCAAGGCAAAACAAAGGAGGAAAAGTGATCATAATAGACATTGTGATAAATGAAAAGGTAGATGAGCATGAAGTAACAGAAGTCAAACTCTGCTTTGATATAACTATGATGGCTAATCACAATTCAAGAGAAAGAGATGAAAAAACATGGAAGAAAATCATAACAGAAGCAGGATTCATGTGTTACAAAATATTTCCTATATTTGGTTTTAGGTCACTTATTGAACTTTCTGTTTAA

Protein sequence

>Msa1095590

MGSENECKAGELFEAQAHLYNQLFSFMRPASIKWAVELGIPDIIQNHGEPITLPELVSALRIPEAKAGCVHSVMRLLAHNKIFAIVKMDDNKEAYALSPTSKLLVKGTDHCLTSMVKMVTNPTMVDKYYQLSKWTSTEDLTIFETTLWDFMQQNLAYAKLFNDAMESDSNMMRFAMSDCKSVFEGLTSLVDVGGGTGNTVKIICEAFPTLKCIVFDLPNVVEGLTGNNYLSFVGGDMFESIPQADAILLKWVLHNWNDDECVKILKNCKEAASRQNKGGKVIIIDIVINEKVDEHEVTEVKLCFDITMMANHNSRERDEKTWKKIITEAGFMCYKIFPIFGFRSLIELSV*