Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536770 | XP_003605087.1 | 86.926 | 283 | 17 | 1 | 1 | 263 | 47 | 329 | 5.56e-174 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536770 | sp|Q40316|VESTR_MEDSA | 47.163 | 282 | 129 | 2 | 1 | 263 | 46 | 326 | 2.12e-85 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536770 | G7JDF6 | 86.926 | 283 | 17 | 1 | 1 | 263 | 47 | 329 | 2.65e-174 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0536770 | 0.817204 | 3.721973e-52 | -8.615850e-47 |
| Msa0062010 | Msa0536770 | 0.809435 | 1.895374e-50 | -8.615850e-47 |
| Msa0063540 | Msa0536770 | 0.804042 | 2.611576e-49 | -8.615850e-47 |
| Msa0150920 | Msa0536770 | 0.822484 | 2.311404e-53 | -8.615850e-47 |
| Msa0209060 | Msa0536770 | 0.806364 | 8.525002e-50 | -8.615850e-47 |
| Msa0220090 | Msa0536770 | 0.804370 | 2.232265e-49 | -8.615850e-47 |
| Msa0222140 | Msa0536770 | 0.804375 | 2.225953e-49 | -8.615850e-47 |
| Msa0366510 | Msa0536770 | 0.815456 | 9.157519e-52 | -8.615850e-47 |
| Msa0374030 | Msa0536770 | 0.803621 | 3.193843e-49 | -8.615850e-47 |
| Msa0374040 | Msa0536770 | 0.813896 | 2.029000e-51 | -8.615850e-47 |
| Msa0414480 | Msa0536770 | 0.808309 | 3.299606e-50 | -8.615850e-47 |
| Msa0261400 | Msa0536770 | 0.808209 | 3.465510e-50 | -8.615850e-47 |
| Msa0274250 | Msa0536770 | 0.802873 | 4.562939e-49 | -8.615850e-47 |
| Msa0281190 | Msa0536770 | 0.818004 | 2.457478e-52 | -8.615850e-47 |
| Msa0288540 | Msa0536770 | 0.807075 | 6.034426e-50 | -8.615850e-47 |
| Msa0314440 | Msa0536770 | 0.800816 | 1.206991e-48 | -8.615850e-47 |
| Msa0326770 | Msa0536770 | 0.811947 | 5.425856e-51 | -8.615850e-47 |
| Msa0535570 | Msa0536770 | 0.800720 | 1.262518e-48 | -8.615850e-47 |
| Msa0536770 | Msa0591490 | 0.824368 | 8.382637e-54 | -8.615850e-47 |
| Msa0536770 | Msa0594620 | 0.817840 | 2.676215e-52 | -8.615850e-47 |
| Msa0536770 | Msa0594630 | 0.925267 | 2.312232e-90 | -8.615850e-47 |
| Msa0536770 | Msa0632980 | 0.949597 | 9.222987e-108 | -8.615850e-47 |
| Msa0536770 | Msa0671640 | 0.886644 | 2.858444e-72 | -8.615850e-47 |
| Msa0536770 | Msa0735140 | 0.832506 | 9.095355e-56 | -8.615850e-47 |
| Msa0536770 | Msa0777070 | 0.816996 | 4.145409e-52 | -8.615850e-47 |
| Msa0536770 | Msa0814160 | 0.844360 | 7.933164e-59 | -8.615850e-47 |
| Msa0536770 | Msa0822410 | 0.805698 | 1.177545e-49 | -8.615850e-47 |
| Msa0536770 | Msa0854840 | 0.820468 | 6.750963e-53 | -8.615850e-47 |
| Msa0536770 | Msa0861730 | 0.820113 | 8.144358e-53 | -8.615850e-47 |
| Msa0536770 | Msa0921180 | 0.821007 | 5.075929e-53 | -8.615850e-47 |
| Msa0536770 | Msa0946010 | 0.808623 | 2.827862e-50 | -8.615850e-47 |
| Msa0536770 | Msa0987640 | 0.810175 | 1.313379e-50 | -8.615850e-47 |
| Msa0536770 | Msa1022510 | 0.805259 | 1.455390e-49 | -8.615850e-47 |
| Msa0536770 | Msa1048350 | 0.812755 | 3.614578e-51 | -8.615850e-47 |
| Msa0536770 | Msa1106680 | 0.811357 | 7.289075e-51 | -8.615850e-47 |
| Msa0536770 | Msa1231720 | 0.828079 | 1.097107e-54 | -8.615850e-47 |
| Msa0536770 | Msa1236680 | 0.813066 | 3.088600e-51 | -8.615850e-47 |
| Msa0536770 | Msa1253750 | 0.804688 | 1.915733e-49 | -8.615850e-47 |
| Msa0536770 | Msa1319010 | 0.806497 | 7.994992e-50 | -8.615850e-47 |
| Msa0536770 | Msa1406840 | 0.803353 | 3.630704e-49 | -8.615850e-47 |
| Msa0536770 | Msa1429550 | 0.816402 | 5.634628e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536770 | MtrunA17_Chr4g0010991 | 86.926 | 283 | 17 | 1 | 1 | 263 | 47 | 329 | 5.11e-178 | 493 |
| Msa0536770 | MtrunA17_Chr7g0245631 | 46.809 | 282 | 130 | 2 | 1 | 263 | 46 | 326 | 3.35e-86 | 259 |
| Msa0536770 | MtrunA17_Chr7g0245691 | 45.965 | 285 | 131 | 3 | 1 | 263 | 47 | 330 | 1.77e-81 | 248 |
| Msa0536770 | MtrunA17_Chr7g0245741 | 45.936 | 283 | 131 | 3 | 1 | 263 | 46 | 326 | 2.60e-80 | 244 |
| Msa0536770 | MtrunA17_Chr7g0245671 | 44.211 | 285 | 136 | 2 | 1 | 263 | 46 | 329 | 3.94e-78 | 239 |
| Msa0536770 | MtrunA17_Chr7g0245641 | 45.423 | 284 | 133 | 3 | 1 | 263 | 84 | 366 | 1.56e-77 | 239 |
| Msa0536770 | MtrunA17_Chr7g0245711 | 45.230 | 283 | 133 | 3 | 1 | 263 | 8 | 288 | 5.55e-76 | 232 |
| Msa0536770 | MtrunA17_Chr7g0245731 | 45.230 | 283 | 133 | 3 | 1 | 263 | 96 | 376 | 1.08e-74 | 232 |
| Msa0536770 | MtrunA17_Chr1g0155411 | 37.456 | 283 | 155 | 2 | 1 | 263 | 45 | 325 | 1.42e-68 | 215 |
| Msa0536770 | MtrunA17_Chr1g0155431 | 37.102 | 283 | 156 | 2 | 1 | 263 | 45 | 325 | 1.11e-66 | 210 |
| Msa0536770 | MtrunA17_Chr4g0048961 | 31.900 | 279 | 158 | 6 | 13 | 262 | 62 | 337 | 1.32e-42 | 148 |
| Msa0536770 | MtrunA17_Chr4g0042101 | 32.215 | 298 | 161 | 6 | 3 | 263 | 60 | 353 | 4.87e-42 | 147 |
| Msa0536770 | MtrunA17_Chr2g0331211 | 30.314 | 287 | 167 | 7 | 1 | 263 | 42 | 319 | 4.95e-38 | 135 |
| Msa0536770 | MtrunA17_Chr4g0002661 | 33.217 | 286 | 153 | 11 | 3 | 263 | 51 | 323 | 1.20e-32 | 121 |
| Msa0536770 | MtrunA17_Chr2g0281991 | 29.568 | 301 | 169 | 8 | 1 | 263 | 45 | 340 | 5.24e-32 | 120 |
| Msa0536770 | MtrunA17_Chr2g0291541 | 30.851 | 282 | 159 | 13 | 8 | 263 | 55 | 326 | 5.77e-31 | 117 |
| Msa0536770 | MtrunA17_Chr7g0275521 | 29.373 | 303 | 162 | 8 | 4 | 263 | 47 | 340 | 2.71e-30 | 115 |
| Msa0536770 | MtrunA17_Chr5g0423551 | 27.972 | 286 | 176 | 7 | 1 | 263 | 41 | 319 | 4.29e-29 | 112 |
| Msa0536770 | MtrunA17_Chr3g0077231 | 30.568 | 229 | 135 | 4 | 1 | 208 | 43 | 268 | 3.82e-28 | 109 |
| Msa0536770 | MtrunA17_Chr3g0106111 | 28.328 | 293 | 161 | 11 | 3 | 263 | 44 | 319 | 5.78e-27 | 106 |
| Msa0536770 | MtrunA17_Chr8g0364051 | 31.602 | 231 | 135 | 5 | 3 | 213 | 47 | 274 | 6.98e-27 | 106 |
| Msa0536770 | MtrunA17_Chr4g0001321 | 30.526 | 285 | 163 | 10 | 2 | 263 | 54 | 326 | 7.00e-27 | 106 |
| Msa0536770 | MtrunA17_Chr3g0077221 | 30.263 | 228 | 133 | 7 | 3 | 208 | 49 | 272 | 3.12e-26 | 104 |
| Msa0536770 | MtrunA17_Chr2g0282001 | 27.483 | 302 | 170 | 9 | 1 | 261 | 44 | 337 | 1.31e-25 | 103 |
| Msa0536770 | MtrunA17_Chr4g0002961 | 31.119 | 286 | 159 | 9 | 3 | 263 | 51 | 323 | 2.17e-25 | 102 |
| Msa0536770 | MtrunA17_Chr5g0431311 | 29.758 | 289 | 162 | 11 | 3 | 263 | 44 | 319 | 2.35e-25 | 102 |
| Msa0536770 | MtrunA17_Chr2g0333781 | 29.371 | 286 | 165 | 11 | 2 | 263 | 57 | 329 | 3.33e-25 | 102 |
| Msa0536770 | MtrunA17_Chr4g0039321 | 29.851 | 268 | 148 | 11 | 3 | 242 | 48 | 303 | 4.89e-25 | 101 |
| Msa0536770 | MtrunA17_Chr8g0363831 | 27.706 | 231 | 144 | 5 | 3 | 213 | 48 | 275 | 6.49e-25 | 100 |
| Msa0536770 | MtrunA17_Chr2g0282011 | 26.246 | 301 | 175 | 7 | 1 | 261 | 45 | 338 | 6.52e-24 | 99.0 |
| Msa0536770 | MtrunA17_Chr4g0039311 | 29.412 | 238 | 136 | 6 | 3 | 216 | 50 | 279 | 4.85e-22 | 93.2 |
| Msa0536770 | MtrunA17_Chr5g0411071 | 28.866 | 194 | 118 | 8 | 11 | 189 | 55 | 243 | 7.16e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536770 | AT2G45400.3 | 45.139 | 288 | 131 | 5 | 1 | 263 | 22 | 307 | 1.92e-77 | 237 |
| Msa0536770 | AT2G45400.1 | 45.139 | 288 | 131 | 5 | 1 | 263 | 79 | 364 | 8.60e-77 | 237 |
| Msa0536770 | AT2G45400.2 | 45.992 | 237 | 103 | 4 | 1 | 212 | 79 | 315 | 5.74e-64 | 203 |
| Msa0536770 | AT5G42800.1 | 37.102 | 283 | 156 | 2 | 1 | 263 | 45 | 325 | 9.45e-62 | 199 |
| Msa0536770 | AT1G61720.1 | 33.333 | 294 | 159 | 7 | 1 | 263 | 50 | 337 | 5.38e-51 | 170 |
| Msa0536770 | AT2G45400.4 | 54.487 | 156 | 66 | 2 | 1 | 151 | 79 | 234 | 2.50e-50 | 166 |
| Msa0536770 | AT4G35420.1 | 32.867 | 286 | 160 | 7 | 1 | 263 | 45 | 321 | 3.79e-46 | 157 |
| Msa0536770 | AT2G02400.1 | 29.268 | 287 | 168 | 10 | 2 | 263 | 42 | 318 | 1.75e-32 | 121 |
| Msa0536770 | AT2G33590.1 | 32.721 | 272 | 137 | 9 | 2 | 243 | 46 | 301 | 6.00e-31 | 117 |
| Msa0536770 | AT4G27250.2 | 29.825 | 285 | 161 | 7 | 3 | 254 | 49 | 327 | 2.51e-30 | 116 |
| Msa0536770 | AT4G27250.1 | 29.831 | 295 | 158 | 9 | 3 | 254 | 49 | 337 | 5.63e-30 | 115 |
| Msa0536770 | AT1G68540.1 | 28.571 | 287 | 175 | 8 | 1 | 263 | 41 | 321 | 1.33e-29 | 114 |
| Msa0536770 | AT5G19440.1 | 29.930 | 284 | 164 | 9 | 3 | 261 | 49 | 322 | 6.45e-28 | 109 |
| Msa0536770 | AT1G09510.1 | 31.718 | 227 | 131 | 4 | 3 | 208 | 47 | 270 | 6.90e-28 | 109 |
| Msa0536770 | AT1G51410.1 | 31.034 | 232 | 134 | 5 | 3 | 212 | 48 | 275 | 6.96e-28 | 109 |
| Msa0536770 | AT1G09480.2 | 29.474 | 285 | 168 | 7 | 3 | 263 | 47 | 322 | 2.33e-27 | 107 |
| Msa0536770 | AT1G25460.1 | 26.897 | 290 | 175 | 7 | 1 | 263 | 40 | 319 | 2.81e-27 | 107 |
| Msa0536770 | AT1G76470.1 | 34.091 | 264 | 146 | 6 | 3 | 243 | 45 | 303 | 5.83e-27 | 107 |
| Msa0536770 | AT1G09480.1 | 29.474 | 285 | 168 | 7 | 3 | 263 | 94 | 369 | 7.31e-27 | 107 |
| Msa0536770 | AT1G66800.1 | 30.667 | 225 | 134 | 5 | 2 | 208 | 46 | 266 | 3.48e-26 | 104 |
| Msa0536770 | AT2G33600.1 | 32.830 | 265 | 146 | 8 | 2 | 243 | 46 | 301 | 1.90e-25 | 102 |
| Msa0536770 | AT1G15950.3 | 30.070 | 286 | 163 | 12 | 2 | 263 | 50 | 322 | 2.11e-25 | 103 |
| Msa0536770 | AT1G15950.1 | 30.070 | 286 | 163 | 12 | 2 | 263 | 50 | 322 | 2.11e-25 | 103 |
| Msa0536770 | AT5G58490.1 | 30.137 | 292 | 157 | 11 | 3 | 263 | 48 | 323 | 3.68e-25 | 102 |
| Msa0536770 | AT1G80820.1 | 29.825 | 285 | 165 | 11 | 2 | 263 | 45 | 317 | 5.99e-25 | 101 |
| Msa0536770 | AT1G09490.2 | 28.421 | 285 | 171 | 8 | 3 | 263 | 16 | 291 | 2.40e-24 | 99.4 |
| Msa0536770 | AT1G15950.2 | 29.927 | 274 | 156 | 11 | 2 | 251 | 50 | 311 | 3.28e-24 | 99.8 |
| Msa0536770 | AT1G09490.1 | 28.421 | 285 | 171 | 8 | 3 | 263 | 47 | 322 | 3.56e-24 | 99.4 |
| Msa0536770 | AT1G09500.3 | 29.310 | 232 | 139 | 5 | 3 | 212 | 47 | 275 | 3.11e-22 | 93.2 |
| Msa0536770 | AT1G09500.2 | 29.310 | 232 | 139 | 5 | 3 | 212 | 13 | 241 | 5.77e-22 | 92.8 |
| Msa0536770 | AT1G09500.1 | 29.310 | 232 | 139 | 5 | 3 | 212 | 47 | 275 | 7.43e-22 | 93.2 |
| Msa0536770 | AT1G15950.6 | 30.342 | 234 | 130 | 9 | 2 | 212 | 50 | 273 | 4.85e-21 | 90.1 |
| Msa0536770 | AT1G15950.5 | 30.342 | 234 | 130 | 9 | 2 | 212 | 50 | 273 | 6.92e-21 | 89.7 |
| Msa0536770 | AT1G80820.2 | 30.342 | 234 | 130 | 9 | 2 | 212 | 45 | 268 | 8.17e-21 | 89.4 |
| Msa0536770 | AT1G15950.4 | 30.342 | 234 | 130 | 9 | 2 | 212 | 50 | 273 | 8.94e-21 | 89.7 |
| Msa0536770 | AT1G68540.2 | 27.273 | 220 | 131 | 7 | 67 | 263 | 1 | 214 | 8.18e-17 | 77.4 |
| Msa0536770 | AT1G15950.7 | 28.821 | 229 | 130 | 10 | 59 | 263 | 5 | 224 | 2.52e-15 | 73.9 |
Find 39 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTTGGATCTTCTTATT+TGG | 0.209176 | 4_1:-14061019 | Msa0536770:CDS |
| TTTGAGTGTGAAAATGTTAA+TGG | 0.229940 | 4_1:-14060397 | Msa0536770:CDS |
| GTTAGCTTCTTTGATGCTTC+TGG | 0.278137 | 4_1:+14061336 | None:intergenic |
| TATGACTGAAAAGAGTGTTT+TGG | 0.313303 | 4_1:-14060986 | Msa0536770:CDS |
| TTGGTTCTTCCTTTGGTTGT+TGG | 0.320036 | 4_1:-14060928 | Msa0536770:intron |
| TGTTAGTTTGGTTCTTCCTT+TGG | 0.331534 | 4_1:-14060935 | Msa0536770:CDS |
| AACTTACTTTGGTATTGTTA+TGG | 0.339526 | 4_1:+14060297 | None:intergenic |
| TGAATTGAAGGTTGTTAGTT+TGG | 0.347694 | 4_1:-14060947 | Msa0536770:CDS |
| CTTCTCTTTACAGCATTGTA+TGG | 0.353937 | 4_1:+14059125 | None:intergenic |
| TGTAAAAGTAGTAACCTTGT+TGG | 0.375771 | 4_1:-14061033 | Msa0536770:CDS |
| CATCCATTGGGTGTGCTAGA+TGG | 0.400667 | 4_1:+14061244 | None:intergenic |
| TGAGATACTTGTATCTATCT+TGG | 0.401199 | 4_1:+14060473 | None:intergenic |
| AACATGCTTTCAAAATTCCT+AGG | 0.428586 | 4_1:+14061169 | None:intergenic |
| TTGCTTTGTCAAAGATATCC+AGG | 0.443021 | 4_1:-14060325 | Msa0536770:CDS |
| CAAAACTACTTGAATCATCA+AGG | 0.450303 | 4_1:+14061298 | None:intergenic |
| AAACCAAGAGCCAGAAGAAA+AGG | 0.479277 | 4_1:-14061217 | Msa0536770:CDS |
| TGGAAAAGTGAATGAATTGA+AGG | 0.484535 | 4_1:-14060959 | Msa0536770:CDS |
| ATGTGGTGGATGAAGATGTT+TGG | 0.490382 | 4_1:-14061071 | Msa0536770:CDS |
| AAAGCAATACAAGGTTGCAT+TGG | 0.515168 | 4_1:-14061273 | Msa0536770:CDS |
| TAAATTTGAACCCAGCATCC+AGG | 0.527299 | 4_1:+14059178 | None:intergenic |
| AGCGTCAAAGATATGTATGA+TGG | 0.533471 | 4_1:-14059150 | Msa0536770:CDS |
| ACATGCTTTCAAAATTCCTA+GGG | 0.535454 | 4_1:+14061170 | None:intergenic |
| GGTATTGTTATGGTATACCC+TGG | 0.560996 | 4_1:+14060307 | None:intergenic |
| CAGAAATATAAGTGCACGAG+TGG | 0.561375 | 4_1:+14060420 | None:intergenic |
| CATACAATGCTGTAAAGAGA+AGG | 0.570151 | 4_1:-14059124 | Msa0536770:CDS |
| AGAGCAGTGGAAGGAACCCT+AGG | 0.577037 | 4_1:-14061186 | Msa0536770:CDS |
| TTACACTTCTAGTGCAGCAA+CGG | 0.577130 | 4_1:-14061118 | Msa0536770:CDS |
| GTATCTCACCAACTCATACA+TGG | 0.579056 | 4_1:-14060458 | Msa0536770:CDS |
| TTTCCATCTAGCACACCCAA+TGG | 0.583542 | 4_1:-14061247 | Msa0536770:CDS |
| TTGAATCATCAAGGTCAGCA+TGG | 0.593822 | 4_1:+14061307 | None:intergenic |
| ATAAAGGGACCAACAACCAA+AGG | 0.611130 | 4_1:+14060919 | None:intergenic |
| AGTGTGAAAATGTTAATGGA+AGG | 0.611428 | 4_1:-14060393 | Msa0536770:CDS |
| TGCTTTGTCAAAGATATCCA+GGG | 0.611825 | 4_1:-14060324 | Msa0536770:CDS |
| ATACAATGCTGTAAAGAGAA+GGG | 0.620211 | 4_1:-14059123 | Msa0536770:CDS |
| TGATAAGAATCTTGATGTGG+TGG | 0.620407 | 4_1:-14061085 | Msa0536770:CDS |
| ATGAAATGATATTCTGTCTG+AGG | 0.636261 | 4_1:+14060360 | None:intergenic |
| CCAAATAAGAAGATCCAACA+AGG | 0.649216 | 4_1:+14061019 | None:intergenic |
| TGTGTGCACCATGTATGAGT+TGG | 0.669747 | 4_1:+14060450 | None:intergenic |
| CAATGATAAGAATCTTGATG+TGG | 0.698025 | 4_1:-14061088 | Msa0536770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTTTGTGTAAAT+CGG | + | chr4_1:14059773-14059792 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | - | chr4_1:14060351-14060370 | Msa0536770:CDS | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | - | chr4_1:14060351-14060370 | Msa0536770:CDS | 10.0% |
| !! | TATAAAAAAAAAAAATTGCA+GGG | + | chr4_1:14060471-14060490 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | + | chr4_1:14060351-14060370 | None:intergenic | 10.0% |
| !!! | ATATTTTTTTTTGTGTAAAT+CGG | + | chr4_1:14059773-14059792 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | - | chr4_1:14060351-14060370 | Msa0536770:CDS | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | - | chr4_1:14060351-14060370 | Msa0536770:CDS | 10.0% |
| !! | TATAAAAAAAAAAAATTGCA+GGG | + | chr4_1:14060471-14060490 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | + | chr4_1:14060351-14060370 | None:intergenic | 10.0% |
| !!! | ATATACATTTTTTTTACCTA+AGG | - | chr4_1:14059655-14059674 | Msa0536770:intron | 15.0% |
| !!! | TATTTTTTTTTGTGTAAATC+GGG | + | chr4_1:14059772-14059791 | None:intergenic | 15.0% |
| !! | TAGGCAAAATATTATTAAAT+AGG | - | chr4_1:14059841-14059860 | Msa0536770:intron | 15.0% |
| !! | AGGCAAAATATTATTAAATA+GGG | - | chr4_1:14059842-14059861 | Msa0536770:intron | 15.0% |
| !! | TATATCTCAAATATTAGAAT+TGG | + | chr4_1:14059915-14059934 | None:intergenic | 15.0% |
| !! | AAAAAATATGAAACTTACTT+TGG | + | chr4_1:14060187-14060206 | None:intergenic | 15.0% |
| !! | CAATGACTTAATTAATATAT+AGG | - | chr4_1:14060274-14060293 | Msa0536770:intron | 15.0% |
| !! | TTAATATATAGGCTAAAATA+TGG | - | chr4_1:14060285-14060304 | Msa0536770:intron | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | + | chr4_1:14060765-14060784 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | + | chr4_1:14060764-14060783 | None:intergenic | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | + | chr4_1:14060765-14060784 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | + | chr4_1:14060764-14060783 | None:intergenic | 15.0% |
| !! | CTATAAAAAAAAAAAATTGC+AGG | + | chr4_1:14060472-14060491 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | - | chr4_1:14060764-14060783 | Msa0536770:intron | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | - | chr4_1:14060765-14060784 | Msa0536770:intron | 15.0% |
| !!! | GCAATTTTTTTTATAGTTTT+TGG | + | chr4_1:14060824-14060843 | None:intergenic | 15.0% |
| !! | AAAACTATAAAAAAAATTGC+AGG | - | chr4_1:14060824-14060843 | Msa0536770:intron | 15.0% |
| !! | AAACTATAAAAAAAATTGCA+GGG | - | chr4_1:14060825-14060844 | Msa0536770:intron | 15.0% |
| !! | ATATATATTAGGCTAAAATA+TGG | + | chr4_1:14060889-14060908 | None:intergenic | 15.0% |
| !! | TTAGTCATATCATATATATT+AGG | + | chr4_1:14060900-14060919 | None:intergenic | 15.0% |
| !! | AAATCTAAATAATGTATCTT+TGG | + | chr4_1:14061125-14061144 | None:intergenic | 15.0% |
| !!! | ATATACATTTTTTTTACCTA+AGG | - | chr4_1:14059655-14059674 | Msa0536770:intron | 15.0% |
| !!! | TATTTTTTTTTGTGTAAATC+GGG | + | chr4_1:14059772-14059791 | None:intergenic | 15.0% |
| !! | TAGGCAAAATATTATTAAAT+AGG | - | chr4_1:14059841-14059860 | Msa0536770:intron | 15.0% |
| !! | AGGCAAAATATTATTAAATA+GGG | - | chr4_1:14059842-14059861 | Msa0536770:intron | 15.0% |
| !! | TATATCTCAAATATTAGAAT+TGG | + | chr4_1:14059915-14059934 | None:intergenic | 15.0% |
| !! | AAAAAATATGAAACTTACTT+TGG | + | chr4_1:14060187-14060206 | None:intergenic | 15.0% |
| !! | CAATGACTTAATTAATATAT+AGG | - | chr4_1:14060274-14060293 | Msa0536770:intron | 15.0% |
| !! | TTAATATATAGGCTAAAATA+TGG | - | chr4_1:14060285-14060304 | Msa0536770:intron | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | + | chr4_1:14060765-14060784 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | + | chr4_1:14060764-14060783 | None:intergenic | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | + | chr4_1:14060765-14060784 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | + | chr4_1:14060764-14060783 | None:intergenic | 15.0% |
| !! | CTATAAAAAAAAAAAATTGC+AGG | + | chr4_1:14060472-14060491 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | - | chr4_1:14060764-14060783 | Msa0536770:intron | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | - | chr4_1:14060765-14060784 | Msa0536770:intron | 15.0% |
| !!! | GCAATTTTTTTTATAGTTTT+TGG | + | chr4_1:14060824-14060843 | None:intergenic | 15.0% |
| !! | AAAACTATAAAAAAAATTGC+AGG | - | chr4_1:14060824-14060843 | Msa0536770:intron | 15.0% |
| !! | AAACTATAAAAAAAATTGCA+GGG | - | chr4_1:14060825-14060844 | Msa0536770:intron | 15.0% |
| !! | ATATATATTAGGCTAAAATA+TGG | + | chr4_1:14060889-14060908 | None:intergenic | 15.0% |
| !! | TTAGTCATATCATATATATT+AGG | + | chr4_1:14060900-14060919 | None:intergenic | 15.0% |
| !! | AAATCTAAATAATGTATCTT+TGG | + | chr4_1:14061125-14061144 | None:intergenic | 15.0% |
| !! | GGCAAAATATTATTAAATAG+GGG | - | chr4_1:14059843-14059862 | Msa0536770:intron | 20.0% |
| !!! | TTTTTTACTAATTTAGACCA+TGG | - | chr4_1:14060207-14060226 | Msa0536770:intron | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | + | chr4_1:14060736-14060755 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | - | chr4_1:14060736-14060755 | Msa0536770:intron | 20.0% |
| !!! | CGTAGTTTTTAACAAAATTA+TGG | - | chr4_1:14061073-14061092 | Msa0536770:CDS | 20.0% |
| !!! | AGTTTTTAACAAAATTATGG+TGG | - | chr4_1:14061076-14061095 | Msa0536770:CDS | 20.0% |
| !! | AAAATAATCACCCAAAAATT+AGG | + | chr4_1:14061211-14061230 | None:intergenic | 20.0% |
| !! | GGCAAAATATTATTAAATAG+GGG | - | chr4_1:14059843-14059862 | Msa0536770:intron | 20.0% |
| !!! | TTTTTTACTAATTTAGACCA+TGG | - | chr4_1:14060207-14060226 | Msa0536770:intron | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | + | chr4_1:14060736-14060755 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | - | chr4_1:14060736-14060755 | Msa0536770:intron | 20.0% |
| !!! | CGTAGTTTTTAACAAAATTA+TGG | - | chr4_1:14061073-14061092 | Msa0536770:CDS | 20.0% |
| !!! | AGTTTTTAACAAAATTATGG+TGG | - | chr4_1:14061076-14061095 | Msa0536770:CDS | 20.0% |
| !! | AAAATAATCACCCAAAAATT+AGG | + | chr4_1:14061211-14061230 | None:intergenic | 20.0% |
| !!! | AGTTTTGAAAAAGCAATACA+AGG | - | chr4_1:14059188-14059207 | Msa0536770:CDS | 25.0% |
| !! | AAACAGATGAAGGTATATTA+GGG | + | chr4_1:14059580-14059599 | None:intergenic | 25.0% |
| !! | TAAACAGATGAAGGTATATT+AGG | + | chr4_1:14059581-14059600 | None:intergenic | 25.0% |
| !!! | TATCCTTTGCTATAAGTTTT+AGG | + | chr4_1:14059879-14059898 | None:intergenic | 25.0% |
| ! | ATATGTGCTATGTTTATTAC+AGG | - | chr4_1:14059971-14059990 | Msa0536770:intron | 25.0% |
| ! | TTTGAGTGTGAAAATGTTAA+TGG | - | chr4_1:14060073-14060092 | Msa0536770:intron | 25.0% |
| ! | AACTTACTTTGGTATTGTTA+TGG | + | chr4_1:14060176-14060195 | None:intergenic | 25.0% |
| !!! | AGTCTACACAATGTATTTTT+TGG | - | chr4_1:14060251-14060270 | Msa0536770:intron | 25.0% |
| ! | TATAGGCTAAAATATGGTAT+TGG | - | chr4_1:14060291-14060310 | Msa0536770:intron | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | + | chr4_1:14060735-14060754 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | - | chr4_1:14060501-14060520 | Msa0536770:intron | 25.0% |
| ! | TGACAAATCATCACATAATT+GGG | + | chr4_1:14060541-14060560 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | + | chr4_1:14060501-14060520 | None:intergenic | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | - | chr4_1:14060735-14060754 | Msa0536770:intron | 25.0% |
| ! | ATTAGGCTAAAATATGGTAT+TGG | + | chr4_1:14060883-14060902 | None:intergenic | 25.0% |
| ! | TAATGTATCTTTGGTTAGAT+TGG | + | chr4_1:14061116-14061135 | None:intergenic | 25.0% |
| ! | AGTTCAATGAAGACAAAAAA+TGG | - | chr4_1:14061233-14061252 | Msa0536770:CDS | 25.0% |
| !!! | AGTTTTGAAAAAGCAATACA+AGG | - | chr4_1:14059188-14059207 | Msa0536770:CDS | 25.0% |
| !! | AAACAGATGAAGGTATATTA+GGG | + | chr4_1:14059580-14059599 | None:intergenic | 25.0% |
| !! | TAAACAGATGAAGGTATATT+AGG | + | chr4_1:14059581-14059600 | None:intergenic | 25.0% |
| !!! | TATCCTTTGCTATAAGTTTT+AGG | + | chr4_1:14059879-14059898 | None:intergenic | 25.0% |
| ! | ATATGTGCTATGTTTATTAC+AGG | - | chr4_1:14059971-14059990 | Msa0536770:intron | 25.0% |
| ! | TTTGAGTGTGAAAATGTTAA+TGG | - | chr4_1:14060073-14060092 | Msa0536770:intron | 25.0% |
| ! | AACTTACTTTGGTATTGTTA+TGG | + | chr4_1:14060176-14060195 | None:intergenic | 25.0% |
| !!! | AGTCTACACAATGTATTTTT+TGG | - | chr4_1:14060251-14060270 | Msa0536770:intron | 25.0% |
| ! | TATAGGCTAAAATATGGTAT+TGG | - | chr4_1:14060291-14060310 | Msa0536770:intron | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | + | chr4_1:14060735-14060754 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | - | chr4_1:14060501-14060520 | Msa0536770:intron | 25.0% |
| ! | TGACAAATCATCACATAATT+GGG | + | chr4_1:14060541-14060560 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | + | chr4_1:14060501-14060520 | None:intergenic | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | - | chr4_1:14060735-14060754 | Msa0536770:intron | 25.0% |
| ! | ATTAGGCTAAAATATGGTAT+TGG | + | chr4_1:14060883-14060902 | None:intergenic | 25.0% |
| ! | TAATGTATCTTTGGTTAGAT+TGG | + | chr4_1:14061116-14061135 | None:intergenic | 25.0% |
| ! | AGTTCAATGAAGACAAAAAA+TGG | - | chr4_1:14061233-14061252 | Msa0536770:CDS | 25.0% |
| CAAAACTACTTGAATCATCA+AGG | + | chr4_1:14059175-14059194 | None:intergenic | 30.0% | |
| ACATGCTTTCAAAATTCCTA+GGG | + | chr4_1:14059303-14059322 | None:intergenic | 30.0% | |
| AACATGCTTTCAAAATTCCT+AGG | + | chr4_1:14059304-14059323 | None:intergenic | 30.0% | |
| !! | AGGAATTTTGAAAGCATGTT+TGG | - | chr4_1:14059304-14059323 | Msa0536770:intron | 30.0% |
| ATCAAAGACAGTGAAAAAAG+TGG | - | chr4_1:14059328-14059347 | Msa0536770:intron | 30.0% | |
| CAATGATAAGAATCTTGATG+TGG | - | chr4_1:14059382-14059401 | Msa0536770:intron | 30.0% | |
| TGTAAAAGTAGTAACCTTGT+TGG | - | chr4_1:14059437-14059456 | Msa0536770:intron | 30.0% | |
| !!! | TATGACTGAAAAGAGTGTTT+TGG | - | chr4_1:14059484-14059503 | Msa0536770:intron | 30.0% |
| TGGAAAAGTGAATGAATTGA+AGG | - | chr4_1:14059511-14059530 | Msa0536770:intron | 30.0% | |
| TGAATTGAAGGTTGTTAGTT+TGG | - | chr4_1:14059523-14059542 | Msa0536770:intron | 30.0% | |
| GGTATATTAGGGCAAATAAA+GGG | + | chr4_1:14059569-14059588 | None:intergenic | 30.0% | |
| AGGTATATTAGGGCAAATAA+AGG | + | chr4_1:14059570-14059589 | None:intergenic | 30.0% | |
| AGTGCTATATAAACAGATGA+AGG | + | chr4_1:14059590-14059609 | None:intergenic | 30.0% | |
| GAAATACATACCAAAGATCA+TGG | + | chr4_1:14059615-14059634 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTACCTAAGGTCCT+AGG | - | chr4_1:14059662-14059681 | Msa0536770:intron | 30.0% |
| GTTCCTAAAACTTATAGCAA+AGG | - | chr4_1:14059873-14059892 | Msa0536770:intron | 30.0% | |
| TGAGATACTTGTATCTATCT+TGG | + | chr4_1:14060000-14060019 | None:intergenic | 30.0% | |
| AGTGTGAAAATGTTAATGGA+AGG | - | chr4_1:14060077-14060096 | Msa0536770:intron | 30.0% | |
| ATGAAATGATATTCTGTCTG+AGG | + | chr4_1:14060113-14060132 | None:intergenic | 30.0% | |
| CATTGTGTAGACTAATTTGA+CGG | + | chr4_1:14060244-14060263 | None:intergenic | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | + | chr4_1:14060797-14060816 | None:intergenic | 30.0% |
| GACAAATCATCACATAATTG+GGG | + | chr4_1:14060540-14060559 | None:intergenic | 30.0% | |
| GTGACAAATCATCACATAAT+TGG | + | chr4_1:14060542-14060561 | None:intergenic | 30.0% | |
| TGACAAATCATCACATAACT+GGG | - | chr4_1:14060698-14060717 | Msa0536770:intron | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | - | chr4_1:14060797-14060816 | Msa0536770:intron | 30.0% |
| ! | ATCATAGAACGTTTTCAACT+TGG | + | chr4_1:14060971-14060990 | None:intergenic | 30.0% |
| ! | AAAAAGCCTAGCCTAATTTT+TGG | - | chr4_1:14061197-14061216 | Msa0536770:CDS | 30.0% |
| ! | AAAAGCCTAGCCTAATTTTT+GGG | - | chr4_1:14061198-14061217 | Msa0536770:CDS | 30.0% |
| ATACAATGCTGTAAAGAGAA+GGG | - | chr4_1:14061347-14061366 | Msa0536770:CDS | 30.0% | |
| CAAAACTACTTGAATCATCA+AGG | + | chr4_1:14059175-14059194 | None:intergenic | 30.0% | |
| ACATGCTTTCAAAATTCCTA+GGG | + | chr4_1:14059303-14059322 | None:intergenic | 30.0% | |
| AACATGCTTTCAAAATTCCT+AGG | + | chr4_1:14059304-14059323 | None:intergenic | 30.0% | |
| !! | AGGAATTTTGAAAGCATGTT+TGG | - | chr4_1:14059304-14059323 | Msa0536770:intron | 30.0% |
| ATCAAAGACAGTGAAAAAAG+TGG | - | chr4_1:14059328-14059347 | Msa0536770:intron | 30.0% | |
| CAATGATAAGAATCTTGATG+TGG | - | chr4_1:14059382-14059401 | Msa0536770:intron | 30.0% | |
| TGTAAAAGTAGTAACCTTGT+TGG | - | chr4_1:14059437-14059456 | Msa0536770:intron | 30.0% | |
| !!! | TATGACTGAAAAGAGTGTTT+TGG | - | chr4_1:14059484-14059503 | Msa0536770:intron | 30.0% |
| TGGAAAAGTGAATGAATTGA+AGG | - | chr4_1:14059511-14059530 | Msa0536770:intron | 30.0% | |
| TGAATTGAAGGTTGTTAGTT+TGG | - | chr4_1:14059523-14059542 | Msa0536770:intron | 30.0% | |
| GGTATATTAGGGCAAATAAA+GGG | + | chr4_1:14059569-14059588 | None:intergenic | 30.0% | |
| AGGTATATTAGGGCAAATAA+AGG | + | chr4_1:14059570-14059589 | None:intergenic | 30.0% | |
| AGTGCTATATAAACAGATGA+AGG | + | chr4_1:14059590-14059609 | None:intergenic | 30.0% | |
| GAAATACATACCAAAGATCA+TGG | + | chr4_1:14059615-14059634 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTACCTAAGGTCCT+AGG | - | chr4_1:14059662-14059681 | Msa0536770:intron | 30.0% |
| GTTCCTAAAACTTATAGCAA+AGG | - | chr4_1:14059873-14059892 | Msa0536770:intron | 30.0% | |
| TGAGATACTTGTATCTATCT+TGG | + | chr4_1:14060000-14060019 | None:intergenic | 30.0% | |
| AGTGTGAAAATGTTAATGGA+AGG | - | chr4_1:14060077-14060096 | Msa0536770:intron | 30.0% | |
| ATGAAATGATATTCTGTCTG+AGG | + | chr4_1:14060113-14060132 | None:intergenic | 30.0% | |
| CATTGTGTAGACTAATTTGA+CGG | + | chr4_1:14060244-14060263 | None:intergenic | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | + | chr4_1:14060797-14060816 | None:intergenic | 30.0% |
| GACAAATCATCACATAATTG+GGG | + | chr4_1:14060540-14060559 | None:intergenic | 30.0% | |
| GTGACAAATCATCACATAAT+TGG | + | chr4_1:14060542-14060561 | None:intergenic | 30.0% | |
| TGACAAATCATCACATAACT+GGG | - | chr4_1:14060698-14060717 | Msa0536770:intron | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | - | chr4_1:14060797-14060816 | Msa0536770:intron | 30.0% |
| ! | ATCATAGAACGTTTTCAACT+TGG | + | chr4_1:14060971-14060990 | None:intergenic | 30.0% |
| ! | AAAAAGCCTAGCCTAATTTT+TGG | - | chr4_1:14061197-14061216 | Msa0536770:CDS | 30.0% |
| ! | AAAAGCCTAGCCTAATTTTT+GGG | - | chr4_1:14061198-14061217 | Msa0536770:CDS | 30.0% |
| ATACAATGCTGTAAAGAGAA+GGG | - | chr4_1:14061347-14061366 | Msa0536770:CDS | 30.0% | |
| AAAGCAATACAAGGTTGCAT+TGG | - | chr4_1:14059197-14059216 | Msa0536770:CDS | 35.0% | |
| ! | CTTTTTGTCACCTTTTCTTC+TGG | + | chr4_1:14059266-14059285 | None:intergenic | 35.0% |
| TGATAAGAATCTTGATGTGG+TGG | - | chr4_1:14059385-14059404 | Msa0536770:intron | 35.0% | |
| CCAAATAAGAAGATCCAACA+AGG | + | chr4_1:14059454-14059473 | None:intergenic | 35.0% | |
| CCTTGTTGGATCTTCTTATT+TGG | - | chr4_1:14059451-14059470 | Msa0536770:intron | 35.0% | |
| !!! | GAAAAGAGTGTTTTGGAGTT+TGG | - | chr4_1:14059491-14059510 | Msa0536770:intron | 35.0% |
| !! | TGTTAGTTTGGTTCTTCCTT+TGG | - | chr4_1:14059535-14059554 | Msa0536770:intron | 35.0% |
| !! | ACAAGAGCGTTAAAACTCTT+CGG | - | chr4_1:14059706-14059725 | Msa0536770:intron | 35.0% |
| GAAGAGTTTGTCATCCATTT+GGG | - | chr4_1:14059728-14059747 | Msa0536770:intron | 35.0% | |
| TTGCTTTGTCAAAGATATCC+AGG | - | chr4_1:14060145-14060164 | Msa0536770:intron | 35.0% | |
| TGCTTTGTCAAAGATATCCA+GGG | - | chr4_1:14060146-14060165 | Msa0536770:intron | 35.0% | |
| ! | CAAAACTGTCCTATTTTGCA+GGG | + | chr4_1:14060318-14060337 | None:intergenic | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | - | chr4_1:14060428-14060447 | Msa0536770:CDS | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | + | chr4_1:14060796-14060815 | None:intergenic | 35.0% |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | - | chr4_1:14060438-14060457 | Msa0536770:CDS | 35.0% |
| !!! | TTGTCACTTTTGTGCATATG+TGG | - | chr4_1:14060555-14060574 | Msa0536770:intron | 35.0% |
| GTGACAAATCATCACATAAC+TGG | - | chr4_1:14060697-14060716 | Msa0536770:intron | 35.0% | |
| GACAAATCATCACATAACTG+GGG | - | chr4_1:14060699-14060718 | Msa0536770:intron | 35.0% | |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | + | chr4_1:14060438-14060457 | None:intergenic | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | - | chr4_1:14060796-14060815 | Msa0536770:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | + | chr4_1:14060428-14060447 | None:intergenic | 35.0% |
| ! | CAAAACTGACCTATTTTGCA+GGG | - | chr4_1:14060856-14060875 | Msa0536770:intron | 35.0% |
| TGACTTCGACAAAATCATAG+TGG | - | chr4_1:14061023-14061042 | Msa0536770:CDS | 35.0% | |
| AATCACCCAAAAATTAGGCT+AGG | + | chr4_1:14061206-14061225 | None:intergenic | 35.0% | |
| TCTATCATCAAAAAAGCTCC+TGG | - | chr4_1:14061274-14061293 | Msa0536770:CDS | 35.0% | |
| AGCGTCAAAGATATGTATGA+TGG | - | chr4_1:14061320-14061339 | Msa0536770:CDS | 35.0% | |
| CTTCTCTTTACAGCATTGTA+TGG | + | chr4_1:14061348-14061367 | None:intergenic | 35.0% | |
| CATACAATGCTGTAAAGAGA+AGG | - | chr4_1:14061346-14061365 | Msa0536770:CDS | 35.0% | |
| AAAGCAATACAAGGTTGCAT+TGG | - | chr4_1:14059197-14059216 | Msa0536770:CDS | 35.0% | |
| ! | CTTTTTGTCACCTTTTCTTC+TGG | + | chr4_1:14059266-14059285 | None:intergenic | 35.0% |
| TGATAAGAATCTTGATGTGG+TGG | - | chr4_1:14059385-14059404 | Msa0536770:intron | 35.0% | |
| CCAAATAAGAAGATCCAACA+AGG | + | chr4_1:14059454-14059473 | None:intergenic | 35.0% | |
| CCTTGTTGGATCTTCTTATT+TGG | - | chr4_1:14059451-14059470 | Msa0536770:intron | 35.0% | |
| !!! | GAAAAGAGTGTTTTGGAGTT+TGG | - | chr4_1:14059491-14059510 | Msa0536770:intron | 35.0% |
| !! | TGTTAGTTTGGTTCTTCCTT+TGG | - | chr4_1:14059535-14059554 | Msa0536770:intron | 35.0% |
| !! | ACAAGAGCGTTAAAACTCTT+CGG | - | chr4_1:14059706-14059725 | Msa0536770:intron | 35.0% |
| GAAGAGTTTGTCATCCATTT+GGG | - | chr4_1:14059728-14059747 | Msa0536770:intron | 35.0% | |
| TTGCTTTGTCAAAGATATCC+AGG | - | chr4_1:14060145-14060164 | Msa0536770:intron | 35.0% | |
| TGCTTTGTCAAAGATATCCA+GGG | - | chr4_1:14060146-14060165 | Msa0536770:intron | 35.0% | |
| ! | CAAAACTGTCCTATTTTGCA+GGG | + | chr4_1:14060318-14060337 | None:intergenic | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | - | chr4_1:14060428-14060447 | Msa0536770:CDS | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | + | chr4_1:14060796-14060815 | None:intergenic | 35.0% |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | - | chr4_1:14060438-14060457 | Msa0536770:CDS | 35.0% |
| !!! | TTGTCACTTTTGTGCATATG+TGG | - | chr4_1:14060555-14060574 | Msa0536770:intron | 35.0% |
| GTGACAAATCATCACATAAC+TGG | - | chr4_1:14060697-14060716 | Msa0536770:intron | 35.0% | |
| GACAAATCATCACATAACTG+GGG | - | chr4_1:14060699-14060718 | Msa0536770:intron | 35.0% | |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | + | chr4_1:14060438-14060457 | None:intergenic | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | - | chr4_1:14060796-14060815 | Msa0536770:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | + | chr4_1:14060428-14060447 | None:intergenic | 35.0% |
| ! | CAAAACTGACCTATTTTGCA+GGG | - | chr4_1:14060856-14060875 | Msa0536770:intron | 35.0% |
| TGACTTCGACAAAATCATAG+TGG | - | chr4_1:14061023-14061042 | Msa0536770:CDS | 35.0% | |
| AATCACCCAAAAATTAGGCT+AGG | + | chr4_1:14061206-14061225 | None:intergenic | 35.0% | |
| TCTATCATCAAAAAAGCTCC+TGG | - | chr4_1:14061274-14061293 | Msa0536770:CDS | 35.0% | |
| AGCGTCAAAGATATGTATGA+TGG | - | chr4_1:14061320-14061339 | Msa0536770:CDS | 35.0% | |
| CTTCTCTTTACAGCATTGTA+TGG | + | chr4_1:14061348-14061367 | None:intergenic | 35.0% | |
| CATACAATGCTGTAAAGAGA+AGG | - | chr4_1:14061346-14061365 | Msa0536770:CDS | 35.0% | |
| ! | GTTAGCTTCTTTGATGCTTC+TGG | + | chr4_1:14059137-14059156 | None:intergenic | 40.0% |
| TTGAATCATCAAGGTCAGCA+TGG | + | chr4_1:14059166-14059185 | None:intergenic | 40.0% | |
| !!! | CTTGGTTTTGCACATCCATT+GGG | + | chr4_1:14059241-14059260 | None:intergenic | 40.0% |
| !!! | TCTTGGTTTTGCACATCCAT+TGG | + | chr4_1:14059242-14059261 | None:intergenic | 40.0% |
| AAACCAAGAGCCAGAAGAAA+AGG | - | chr4_1:14059253-14059272 | Msa0536770:intron | 40.0% | |
| AAAGGTGACAAAAAGAGCAG+TGG | - | chr4_1:14059271-14059290 | Msa0536770:intron | 40.0% | |
| TTACACTTCTAGTGCAGCAA+CGG | - | chr4_1:14059352-14059371 | Msa0536770:intron | 40.0% | |
| !! | ATGTGGTGGATGAAGATGTT+TGG | - | chr4_1:14059399-14059418 | Msa0536770:intron | 40.0% |
| ! | TTGGTTCTTCCTTTGGTTGT+TGG | - | chr4_1:14059542-14059561 | Msa0536770:intron | 40.0% |
| ATAAAGGGACCAACAACCAA+AGG | + | chr4_1:14059554-14059573 | None:intergenic | 40.0% | |
| GGAAGAGTTTGTCATCCATT+TGG | - | chr4_1:14059727-14059746 | Msa0536770:intron | 40.0% | |
| GTATCTCACCAACTCATACA+TGG | - | chr4_1:14060012-14060031 | Msa0536770:intron | 40.0% | |
| CAGAAATATAAGTGCACGAG+TGG | + | chr4_1:14060053-14060072 | None:intergenic | 40.0% | |
| GGTATTGTTATGGTATACCC+TGG | + | chr4_1:14060166-14060185 | None:intergenic | 40.0% | |
| TGACGGAGTTTACAATTCCA+TGG | + | chr4_1:14060227-14060246 | None:intergenic | 40.0% | |
| ! | CCAAAACTGTCCTATTTTGC+AGG | + | chr4_1:14060319-14060338 | None:intergenic | 40.0% |
| ! | CCTGCAAAATAGGACAGTTT+TGG | - | chr4_1:14060316-14060335 | Msa0536770:CDS | 40.0% |
| !! | TTTTTGGTCCCTGCAAATAC+AGG | - | chr4_1:14060367-14060386 | Msa0536770:CDS | 40.0% |
| ! | AAAACTGGCCTGTATTTGCA+GGG | + | chr4_1:14060378-14060397 | None:intergenic | 40.0% |
| ! | TAAAACTGGCCTGTATTTGC+AGG | + | chr4_1:14060379-14060398 | None:intergenic | 40.0% |
| GCAGGGACTAAAACTAAAAC+TGG | + | chr4_1:14060393-14060412 | None:intergenic | 40.0% | |
| TCATCACATAATTGGGGTCA+TGG | + | chr4_1:14060534-14060553 | None:intergenic | 40.0% | |
| ! | CCTGCAAAATAGGTCAGTTT+TGG | + | chr4_1:14060858-14060877 | None:intergenic | 40.0% |
| ! | CCAAAACTGACCTATTTTGC+AGG | - | chr4_1:14060855-14060874 | Msa0536770:intron | 40.0% |
| TAAATTTGAACCCAGCATCC+AGG | + | chr4_1:14061295-14061314 | None:intergenic | 40.0% | |
| ! | GTTAGCTTCTTTGATGCTTC+TGG | + | chr4_1:14059137-14059156 | None:intergenic | 40.0% |
| TTGAATCATCAAGGTCAGCA+TGG | + | chr4_1:14059166-14059185 | None:intergenic | 40.0% | |
| !!! | CTTGGTTTTGCACATCCATT+GGG | + | chr4_1:14059241-14059260 | None:intergenic | 40.0% |
| !!! | TCTTGGTTTTGCACATCCAT+TGG | + | chr4_1:14059242-14059261 | None:intergenic | 40.0% |
| AAACCAAGAGCCAGAAGAAA+AGG | - | chr4_1:14059253-14059272 | Msa0536770:intron | 40.0% | |
| AAAGGTGACAAAAAGAGCAG+TGG | - | chr4_1:14059271-14059290 | Msa0536770:intron | 40.0% | |
| TTACACTTCTAGTGCAGCAA+CGG | - | chr4_1:14059352-14059371 | Msa0536770:intron | 40.0% | |
| !! | ATGTGGTGGATGAAGATGTT+TGG | - | chr4_1:14059399-14059418 | Msa0536770:intron | 40.0% |
| ! | TTGGTTCTTCCTTTGGTTGT+TGG | - | chr4_1:14059542-14059561 | Msa0536770:intron | 40.0% |
| ATAAAGGGACCAACAACCAA+AGG | + | chr4_1:14059554-14059573 | None:intergenic | 40.0% | |
| GGAAGAGTTTGTCATCCATT+TGG | - | chr4_1:14059727-14059746 | Msa0536770:intron | 40.0% | |
| GTATCTCACCAACTCATACA+TGG | - | chr4_1:14060012-14060031 | Msa0536770:intron | 40.0% | |
| CAGAAATATAAGTGCACGAG+TGG | + | chr4_1:14060053-14060072 | None:intergenic | 40.0% | |
| GGTATTGTTATGGTATACCC+TGG | + | chr4_1:14060166-14060185 | None:intergenic | 40.0% | |
| TGACGGAGTTTACAATTCCA+TGG | + | chr4_1:14060227-14060246 | None:intergenic | 40.0% | |
| ! | CCAAAACTGTCCTATTTTGC+AGG | + | chr4_1:14060319-14060338 | None:intergenic | 40.0% |
| ! | CCTGCAAAATAGGACAGTTT+TGG | - | chr4_1:14060316-14060335 | Msa0536770:CDS | 40.0% |
| !! | TTTTTGGTCCCTGCAAATAC+AGG | - | chr4_1:14060367-14060386 | Msa0536770:CDS | 40.0% |
| ! | AAAACTGGCCTGTATTTGCA+GGG | + | chr4_1:14060378-14060397 | None:intergenic | 40.0% |
| ! | TAAAACTGGCCTGTATTTGC+AGG | + | chr4_1:14060379-14060398 | None:intergenic | 40.0% |
| GCAGGGACTAAAACTAAAAC+TGG | + | chr4_1:14060393-14060412 | None:intergenic | 40.0% | |
| TCATCACATAATTGGGGTCA+TGG | + | chr4_1:14060534-14060553 | None:intergenic | 40.0% | |
| ! | CCTGCAAAATAGGTCAGTTT+TGG | + | chr4_1:14060858-14060877 | None:intergenic | 40.0% |
| ! | CCAAAACTGACCTATTTTGC+AGG | - | chr4_1:14060855-14060874 | Msa0536770:intron | 40.0% |
| TAAATTTGAACCCAGCATCC+AGG | + | chr4_1:14061295-14061314 | None:intergenic | 40.0% | |
| TTTCCATCTAGCACACCCAA+TGG | - | chr4_1:14059223-14059242 | Msa0536770:CDS | 45.0% | |
| !!! | TCACCTTTTCTTCTGGCTCT+TGG | + | chr4_1:14059259-14059278 | None:intergenic | 45.0% |
| GTGACAAAAAGAGCAGTGGA+AGG | - | chr4_1:14059275-14059294 | Msa0536770:intron | 45.0% | |
| ATAGCACTCGCCATGATCTT+TGG | - | chr4_1:14059602-14059621 | Msa0536770:intron | 45.0% | |
| TCAAGACTAGGTTCGAACCT+AGG | + | chr4_1:14059682-14059701 | None:intergenic | 45.0% | |
| GCTCTTGTATGCTCAAGACT+AGG | + | chr4_1:14059694-14059713 | None:intergenic | 45.0% | |
| TGTGTGCACCATGTATGAGT+TGG | + | chr4_1:14060023-14060042 | None:intergenic | 45.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | - | chr4_1:14060306-14060325 | Msa0536770:CDS | 45.0% |
| ATCATCACATAACTGGGGTC+AGG | - | chr4_1:14060704-14060723 | Msa0536770:intron | 45.0% | |
| TCATCACATAACTGGGGTCA+GGG | - | chr4_1:14060705-14060724 | Msa0536770:intron | 45.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | chr4_1:14060306-14060325 | None:intergenic | 45.0% |
| TCAAAAAAGCTCCTGGATGC+TGG | - | chr4_1:14061281-14061300 | Msa0536770:CDS | 45.0% | |
| CAAAAAAGCTCCTGGATGCT+GGG | - | chr4_1:14061282-14061301 | Msa0536770:CDS | 45.0% | |
| TTTCCATCTAGCACACCCAA+TGG | - | chr4_1:14059223-14059242 | Msa0536770:CDS | 45.0% | |
| !!! | TCACCTTTTCTTCTGGCTCT+TGG | + | chr4_1:14059259-14059278 | None:intergenic | 45.0% |
| GTGACAAAAAGAGCAGTGGA+AGG | - | chr4_1:14059275-14059294 | Msa0536770:intron | 45.0% | |
| ATAGCACTCGCCATGATCTT+TGG | - | chr4_1:14059602-14059621 | Msa0536770:intron | 45.0% | |
| TCAAGACTAGGTTCGAACCT+AGG | + | chr4_1:14059682-14059701 | None:intergenic | 45.0% | |
| GCTCTTGTATGCTCAAGACT+AGG | + | chr4_1:14059694-14059713 | None:intergenic | 45.0% | |
| TGTGTGCACCATGTATGAGT+TGG | + | chr4_1:14060023-14060042 | None:intergenic | 45.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | - | chr4_1:14060306-14060325 | Msa0536770:CDS | 45.0% |
| ATCATCACATAACTGGGGTC+AGG | - | chr4_1:14060704-14060723 | Msa0536770:intron | 45.0% | |
| TCATCACATAACTGGGGTCA+GGG | - | chr4_1:14060705-14060724 | Msa0536770:intron | 45.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | chr4_1:14060306-14060325 | None:intergenic | 45.0% |
| TCAAAAAAGCTCCTGGATGC+TGG | - | chr4_1:14061281-14061300 | Msa0536770:CDS | 45.0% | |
| CAAAAAAGCTCCTGGATGCT+GGG | - | chr4_1:14061282-14061301 | Msa0536770:CDS | 45.0% | |
| !!! | TTTATTTCTTTATTTATTAT+AGG | - | chr4_1:14059822-14059841 | Msa0536770:intron | 5.0% |
| !!! | TTTTTTTTTTTTATAGTTTT+TGG | - | chr4_1:14060476-14060495 | Msa0536770:CDS | 5.0% |
| !!! | TTTATTTCTTTATTTATTAT+AGG | - | chr4_1:14059822-14059841 | Msa0536770:intron | 5.0% |
| !!! | TTTTTTTTTTTTATAGTTTT+TGG | - | chr4_1:14060476-14060495 | Msa0536770:CDS | 5.0% |
| CATCCATTGGGTGTGCTAGA+TGG | + | chr4_1:14059229-14059248 | None:intergenic | 50.0% | |
| AGGTTCGAACCTAGGACCTT+AGG | + | chr4_1:14059674-14059693 | None:intergenic | 50.0% | |
| CATCCATTGGGTGTGCTAGA+TGG | + | chr4_1:14059229-14059248 | None:intergenic | 50.0% | |
| AGGTTCGAACCTAGGACCTT+AGG | + | chr4_1:14059674-14059693 | None:intergenic | 50.0% | |
| AGAGCAGTGGAAGGAACCCT+AGG | - | chr4_1:14059284-14059303 | Msa0536770:intron | 55.0% | |
| !! | ATCCATTTGGGTTGCGCGTG+CGG | - | chr4_1:14059740-14059759 | Msa0536770:intron | 55.0% |
| AGAGCAGTGGAAGGAACCCT+AGG | - | chr4_1:14059284-14059303 | Msa0536770:intron | 55.0% | |
| !! | ATCCATTTGGGTTGCGCGTG+CGG | - | chr4_1:14059740-14059759 | Msa0536770:intron | 55.0% |
| TTCCGCACGCGCAACCCAAA+TGG | + | chr4_1:14059745-14059764 | None:intergenic | 60.0% | |
| TTCCGCACGCGCAACCCAAA+TGG | + | chr4_1:14059745-14059764 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 14059113 | 14061379 | 14059113 | ID=Msa0536770;Name=Msa0536770 |
| chr4_1 | mRNA | 14059113 | 14061379 | 14059113 | ID=Msa0536770-mRNA-1;Parent=Msa0536770;Name=Msa0536770-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|1|0.66|3|0|263 |
| chr4_1 | exon | 14060929 | 14061379 | 14060929 | ID=Msa0536770-mRNA-1:exon:4488;Parent=Msa0536770-mRNA-1 |
| chr4_1 | exon | 14060304 | 14060499 | 14060304 | ID=Msa0536770-mRNA-1:exon:4487;Parent=Msa0536770-mRNA-1 |
| chr4_1 | exon | 14059113 | 14059257 | 14059113 | ID=Msa0536770-mRNA-1:exon:4486;Parent=Msa0536770-mRNA-1 |
| chr4_1 | CDS | 14060929 | 14061379 | 14060929 | ID=Msa0536770-mRNA-1:cds;Parent=Msa0536770-mRNA-1 |
| chr4_1 | CDS | 14060304 | 14060499 | 14060304 | ID=Msa0536770-mRNA-1:cds;Parent=Msa0536770-mRNA-1 |
| chr4_1 | CDS | 14059113 | 14059257 | 14059113 | ID=Msa0536770-mRNA-1:cds;Parent=Msa0536770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
