Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230560 | XP_003591148.1 | 99.405 | 168 | 1 | 0 | 1 | 168 | 1 | 168 | 1.18e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230560 | sp|Q5J907|TCTP_ELAGV | 91.071 | 168 | 15 | 0 | 1 | 168 | 1 | 168 | 2.60e-110 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230560 | G7I8P9 | 99.405 | 168 | 1 | 0 | 1 | 168 | 1 | 168 | 5.65e-118 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032860 | Msa0230560 | 0.807364 | 5.239316e-50 | -8.615850e-47 |
| Msa0032880 | Msa0230560 | 0.823594 | 1.273770e-53 | -8.615850e-47 |
| Msa0109590 | Msa0230560 | 0.803512 | 3.364521e-49 | -8.615850e-47 |
| Msa0187230 | Msa0230560 | 0.840414 | 8.823368e-58 | -8.615850e-47 |
| Msa0187250 | Msa0230560 | 0.840091 | 1.071096e-57 | -8.615850e-47 |
| Msa0230560 | Msa0271360 | 0.834568 | 2.779855e-56 | -8.615850e-47 |
| Msa0230560 | Msa0336310 | 0.806822 | 6.824038e-50 | -8.615850e-47 |
| Msa0230560 | Msa0336320 | 0.801909 | 7.208987e-49 | -8.615850e-47 |
| Msa0230560 | Msa0387280 | 0.802556 | 5.304820e-49 | -8.615850e-47 |
| Msa0230560 | Msa0435690 | 0.818791 | 1.630130e-52 | -8.615850e-47 |
| Msa0230560 | Msa0521740 | 0.830048 | 3.657854e-55 | -8.615850e-47 |
| Msa0230560 | Msa0586070 | 0.816136 | 6.461194e-52 | -8.615850e-47 |
| Msa0230560 | Msa0747260 | 0.808721 | 2.694111e-50 | -8.615850e-47 |
| Msa0230560 | Msa0747270 | 0.833224 | 6.031082e-56 | -8.615850e-47 |
| Msa0230560 | Msa0864470 | -0.806802 | 6.893280e-50 | -8.615850e-47 |
| Msa0230560 | Msa1177780 | 0.815846 | 7.500667e-52 | -8.615850e-47 |
| Msa0230560 | Msa1211140 | -0.801933 | 7.128041e-49 | -8.615850e-47 |
| Msa0230560 | Msa1358670 | 0.825793 | 3.862090e-54 | -8.615850e-47 |
| Msa0230560 | Msa1454950 | 0.883299 | 5.048288e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230560 | MtrunA17_Chr1g0192171 | 99.405 | 168 | 1 | 0 | 1 | 168 | 1 | 168 | 1.09e-121 | 340 |
| Msa0230560 | MtrunA17_Chr1g0192201 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 8.85e-121 | 337 |
| Msa0230560 | MtrunA17_Chr2g0295871 | 86.310 | 168 | 22 | 1 | 1 | 168 | 1 | 167 | 2.40e-103 | 293 |
| Msa0230560 | MtrunA17_Chr6g0479151 | 81.366 | 161 | 29 | 1 | 1 | 161 | 1 | 160 | 9.32e-91 | 261 |
| Msa0230560 | MtrunA17_Chr1g0192161 | 86.047 | 129 | 18 | 0 | 19 | 147 | 9 | 137 | 1.98e-75 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230560 | AT3G16640.1 | 79.167 | 168 | 35 | 0 | 1 | 168 | 1 | 168 | 4.73e-97 | 278 |
| Msa0230560 | AT3G05540.1 | 80.473 | 169 | 31 | 2 | 1 | 168 | 1 | 168 | 3.36e-90 | 260 |
Find 42 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATTGTTGACACTTTC+AGG | 0.110440 | 2_2:+2751935 | Msa0230560:CDS |
| TTTAAATTGATGTTCTTAAT+TGG | 0.245351 | 2_2:+2752584 | Msa0230560:three_prime_UTR |
| AATTGTAGGTCTTTGAGTTT+AGG | 0.257674 | 2_2:-2752099 | None:intergenic |
| GTTTACCAGGATCTTCTTAC+AGG | 0.263960 | 2_2:+2750982 | Msa0230560:CDS |
| ATTGTAGGTCTTTGAGTTTA+GGG | 0.290821 | 2_2:-2752098 | None:intergenic |
| TGTTGACACTTTCAGGCTTC+AGG | 0.310211 | 2_2:+2751942 | Msa0230560:CDS |
| CTACTTTGCTTATGGCTTGA+AGG | 0.363173 | 2_2:+2752521 | Msa0230560:CDS |
| TCCATTCTCAATTTCCTTGT+AGG | 0.365251 | 2_2:-2751666 | None:intergenic |
| GATGAAACACATACAATTGT+AGG | 0.393371 | 2_2:-2752113 | None:intergenic |
| TGCAACCATGCTTGTTTACC+AGG | 0.395604 | 2_2:+2750969 | Msa0230560:exon |
| ACAAGCATGGTTGCAGTTGT+TGG | 0.399920 | 2_2:-2750961 | None:intergenic |
| AATTGAGAATGGAATGCTTT+GGG | 0.401755 | 2_2:+2751676 | Msa0230560:CDS |
| CCATTCTCAATTTCCTTGTA+GGG | 0.404442 | 2_2:-2751665 | None:intergenic |
| AATTGCTTCTTATCAAAAGC+TGG | 0.428621 | 2_2:-2751970 | None:intergenic |
| GACTAAAATCATAACTTCAT+AGG | 0.445800 | 2_2:-2752700 | None:intergenic |
| TATTAACATGATGATTAACT+TGG | 0.446484 | 2_2:-2752743 | None:intergenic |
| GAATGGAATGCTTTGGGAAG+TGG | 0.450476 | 2_2:+2751682 | Msa0230560:CDS |
| TAAGCAAAGTAGAGAAAAGT+TGG | 0.453692 | 2_2:-2752510 | None:intergenic |
| AAATTGAGAATGGAATGCTT+TGG | 0.455334 | 2_2:+2751675 | Msa0230560:CDS |
| CCTTGTGTTTGCTTACTACA+AGG | 0.455642 | 2_2:+2752473 | Msa0230560:CDS |
| CCCTACAAGGAAATTGAGAA+TGG | 0.477742 | 2_2:+2751665 | Msa0230560:CDS |
| TATTTGCAGTGGGTTGTTCA+AGG | 0.483236 | 2_2:+2751826 | Msa0230560:intron |
| CTCTGACTCATTCCCCTACA+AGG | 0.486361 | 2_2:+2751652 | Msa0230560:CDS |
| GGTCTTTGAGTTTAGGGAGA+AGG | 0.500494 | 2_2:-2752092 | None:intergenic |
| GGAGCAGTGGATGTGAATAT+TGG | 0.501116 | 2_2:+2751847 | Msa0230560:CDS |
| TTATACCTGTAAGAAGATCC+TGG | 0.509601 | 2_2:-2750987 | None:intergenic |
| GGTGCTAATCCTTCTGCTGA+GGG | 0.511283 | 2_2:+2751868 | Msa0230560:CDS |
| GCTTTGGGAAGTGGAAGGAA+AGG | 0.531642 | 2_2:+2751691 | Msa0230560:CDS |
| GTGTTTGCTTACTACAAGGA+TGG | 0.538874 | 2_2:+2752477 | Msa0230560:CDS |
| CATTCTCAATTTCCTTGTAG+GGG | 0.549656 | 2_2:-2751664 | None:intergenic |
| TGGTGCTAATCCTTCTGCTG+AGG | 0.557106 | 2_2:+2751867 | Msa0230560:CDS |
| TCGTCTCCACCCTCAGCAGA+AGG | 0.563383 | 2_2:-2751877 | None:intergenic |
| GGGGAGAGCATGCATGATGA+TGG | 0.565967 | 2_2:+2752447 | Msa0230560:CDS |
| GCTAATCCTTCTGCTGAGGG+TGG | 0.579304 | 2_2:+2751871 | Msa0230560:CDS |
| TTCTGCTGAGGGTGGAGACG+AGG | 0.580750 | 2_2:+2751879 | Msa0230560:CDS |
| AAGATCCTGGTAAACAAGCA+TGG | 0.602746 | 2_2:-2750974 | None:intergenic |
| GTAGAGAAAAGTTGGATCAG+TGG | 0.605758 | 2_2:-2752502 | None:intergenic |
| GAGGGTGGAGACGAGGATGA+TGG | 0.616662 | 2_2:+2751886 | Msa0230560:CDS |
| CCTTGTAGTAAGCAAACACA+AGG | 0.635355 | 2_2:-2752473 | None:intergenic |
| GTGGGTTGTTCAAGGAGCAG+TGG | 0.636439 | 2_2:+2751834 | Msa0230560:intron |
| GGAATGCTTTGGGAAGTGGA+AGG | 0.659950 | 2_2:+2751686 | Msa0230560:CDS |
| CGATGATCAAGCTGTCAAAG+TGG | 0.698235 | 2_2:+2751912 | Msa0230560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTATGAACATATATT+TGG | - | chr2_2:2751777-2751796 | None:intergenic | 10.0% |
| !! | TTTATTTATGAACATATATT+TGG | - | chr2_2:2751777-2751796 | None:intergenic | 10.0% |
| !!! | AATTATTTAAAACCAAAATG+AGG | - | chr2_2:2751158-2751177 | None:intergenic | 15.0% |
| !!! | AACAAGTTTTATCAAAATTT+TGG | - | chr2_2:2751351-2751370 | None:intergenic | 15.0% |
| !!! | AAAATTTTGATAAAACTTGT+TGG | + | chr2_2:2751350-2751369 | Msa0230560:intron | 15.0% |
| !!! | ATATTTAAGATTATTGCTTT+TGG | + | chr2_2:2751556-2751575 | Msa0230560:intron | 15.0% |
| !! | TAAACTTAATAAAACCAAAA+AGG | - | chr2_2:2752151-2752170 | None:intergenic | 15.0% |
| !! | TTTAAATTGATGTTCTTAAT+TGG | + | chr2_2:2752584-2752603 | Msa0230560:three_prime_UTR | 15.0% |
| !!! | TGAATTTTTAAGTTCTAATT+AGG | + | chr2_2:2752637-2752656 | Msa0230560:three_prime_UTR | 15.0% |
| !!! | TTCAAAGATACATTTTTATA+TGG | + | chr2_2:2752667-2752686 | Msa0230560:three_prime_UTR | 15.0% |
| !!! | AATTATTTAAAACCAAAATG+AGG | - | chr2_2:2751158-2751177 | None:intergenic | 15.0% |
| !!! | AACAAGTTTTATCAAAATTT+TGG | - | chr2_2:2751351-2751370 | None:intergenic | 15.0% |
| !!! | AAAATTTTGATAAAACTTGT+TGG | + | chr2_2:2751350-2751369 | Msa0230560:intron | 15.0% |
| !!! | ATATTTAAGATTATTGCTTT+TGG | + | chr2_2:2751556-2751575 | Msa0230560:intron | 15.0% |
| !! | TAAACTTAATAAAACCAAAA+AGG | - | chr2_2:2752151-2752170 | None:intergenic | 15.0% |
| !! | TTTAAATTGATGTTCTTAAT+TGG | + | chr2_2:2752584-2752603 | Msa0230560:three_prime_UTR | 15.0% |
| !!! | TGAATTTTTAAGTTCTAATT+AGG | + | chr2_2:2752637-2752656 | Msa0230560:three_prime_UTR | 15.0% |
| !!! | TTCAAAGATACATTTTTATA+TGG | + | chr2_2:2752667-2752686 | Msa0230560:three_prime_UTR | 15.0% |
| !! | AAAAAAATCTCAAAGATGAA+AGG | - | chr2_2:2751016-2751035 | None:intergenic | 20.0% |
| !!! | AACTTCTCTGTTTTATATAT+GGG | - | chr2_2:2751186-2751205 | None:intergenic | 20.0% |
| !!! | AAACTTCTCTGTTTTATATA+TGG | - | chr2_2:2751187-2751206 | None:intergenic | 20.0% |
| !!! | TATAAAACAGAGAAGTTTTA+TGG | + | chr2_2:2751189-2751208 | Msa0230560:intron | 20.0% |
| !! | AATCAGTTAGGATTATTTAT+TGG | - | chr2_2:2752398-2752417 | None:intergenic | 20.0% |
| !!! | ATTTTTAAGTTCTAATTAGG+AGG | + | chr2_2:2752640-2752659 | Msa0230560:three_prime_UTR | 20.0% |
| !! | AAAAAAATCTCAAAGATGAA+AGG | - | chr2_2:2751016-2751035 | None:intergenic | 20.0% |
| !!! | AACTTCTCTGTTTTATATAT+GGG | - | chr2_2:2751186-2751205 | None:intergenic | 20.0% |
| !!! | AAACTTCTCTGTTTTATATA+TGG | - | chr2_2:2751187-2751206 | None:intergenic | 20.0% |
| !!! | TATAAAACAGAGAAGTTTTA+TGG | + | chr2_2:2751189-2751208 | Msa0230560:intron | 20.0% |
| !! | AATCAGTTAGGATTATTTAT+TGG | - | chr2_2:2752398-2752417 | None:intergenic | 20.0% |
| !!! | ATTTTTAAGTTCTAATTAGG+AGG | + | chr2_2:2752640-2752659 | Msa0230560:three_prime_UTR | 20.0% |
| ! | GAAAAACAAACGAAAACTAA+AGG | - | chr2_2:2751039-2751058 | None:intergenic | 25.0% |
| !!! | CTTAAAACTTCTCTGTTTTT+TGG | - | chr2_2:2751240-2751259 | None:intergenic | 25.0% |
| !! | CAAAAAACAGAGAAGTTTTA+AGG | + | chr2_2:2751238-2751257 | Msa0230560:intron | 25.0% |
| ! | AAATATTCATGTAACACTTG+TGG | - | chr2_2:2751432-2751451 | None:intergenic | 25.0% |
| ! | AAAATCCACAATCAAGTATT+AGG | - | chr2_2:2751481-2751500 | None:intergenic | 25.0% |
| !!! | GATTGTGGATTTTATTTTCT+TGG | + | chr2_2:2751488-2751507 | Msa0230560:intron | 25.0% |
| ! | TAATGTTGCTAACTTTACTT+TGG | + | chr2_2:2751600-2751619 | Msa0230560:intron | 25.0% |
| ! | GATTAATTACTCAATCAGTT+AGG | - | chr2_2:2752410-2752429 | None:intergenic | 25.0% |
| !!! | AATCAATGTTACAGTTTTGT+TGG | + | chr2_2:2752426-2752445 | Msa0230560:intron | 25.0% |
| !!! | ATCAATGTTACAGTTTTGTT+GGG | + | chr2_2:2752427-2752446 | Msa0230560:intron | 25.0% |
| ! | GACTAAAATCATAACTTCAT+AGG | - | chr2_2:2752703-2752722 | None:intergenic | 25.0% |
| ! | GAAAAACAAACGAAAACTAA+AGG | - | chr2_2:2751039-2751058 | None:intergenic | 25.0% |
| !!! | CTTAAAACTTCTCTGTTTTT+TGG | - | chr2_2:2751240-2751259 | None:intergenic | 25.0% |
| !! | CAAAAAACAGAGAAGTTTTA+AGG | + | chr2_2:2751238-2751257 | Msa0230560:intron | 25.0% |
| ! | AAATATTCATGTAACACTTG+TGG | - | chr2_2:2751432-2751451 | None:intergenic | 25.0% |
| ! | AAAATCCACAATCAAGTATT+AGG | - | chr2_2:2751481-2751500 | None:intergenic | 25.0% |
| !!! | GATTGTGGATTTTATTTTCT+TGG | + | chr2_2:2751488-2751507 | Msa0230560:intron | 25.0% |
| ! | TAATGTTGCTAACTTTACTT+TGG | + | chr2_2:2751600-2751619 | Msa0230560:intron | 25.0% |
| ! | GATTAATTACTCAATCAGTT+AGG | - | chr2_2:2752410-2752429 | None:intergenic | 25.0% |
| !!! | AATCAATGTTACAGTTTTGT+TGG | + | chr2_2:2752426-2752445 | Msa0230560:intron | 25.0% |
| !!! | ATCAATGTTACAGTTTTGTT+GGG | + | chr2_2:2752427-2752446 | Msa0230560:intron | 25.0% |
| ! | GACTAAAATCATAACTTCAT+AGG | - | chr2_2:2752703-2752722 | None:intergenic | 25.0% |
| TCCTGTAATTAGTGCATAAT+TGG | + | chr2_2:2751108-2751127 | Msa0230560:intron | 30.0% | |
| TCCAATTATGCACTAATTAC+AGG | - | chr2_2:2751112-2751131 | None:intergenic | 30.0% | |
| ! | GTTTCTCATAAACCTCATTT+TGG | + | chr2_2:2751143-2751162 | Msa0230560:intron | 30.0% |
| GGTTTAACCTTTAGATTTGA+AGG | + | chr2_2:2751301-2751320 | Msa0230560:intron | 30.0% | |
| TTTCACTCCTTCAAATCTAA+AGG | - | chr2_2:2751311-2751330 | None:intergenic | 30.0% | |
| !!! | AAAGTTGTTGTTTTTGTGAC+AGG | + | chr2_2:2751382-2751401 | Msa0230560:intron | 30.0% |
| !!! | AAGTTGTTGTTTTTGTGACA+GGG | + | chr2_2:2751383-2751402 | Msa0230560:intron | 30.0% |
| GTTAGGGTAATCATGTTTAA+GGG | - | chr2_2:2751459-2751478 | None:intergenic | 30.0% | |
| CACAATCAAGTATTAGGTTA+GGG | - | chr2_2:2751475-2751494 | None:intergenic | 30.0% | |
| !! | ATTTTCTTGGTTACTGATTG+TGG | + | chr2_2:2751501-2751520 | Msa0230560:intron | 30.0% |
| AAATTGAGAATGGAATGCTT+TGG | + | chr2_2:2751675-2751694 | Msa0230560:CDS | 30.0% | |
| AATTGAGAATGGAATGCTTT+GGG | + | chr2_2:2751676-2751695 | Msa0230560:CDS | 30.0% | |
| CACATCACACAATAAACTTT+AGG | - | chr2_2:2751804-2751823 | None:intergenic | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | + | chr2_2:2751935-2751954 | Msa0230560:CDS | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | - | chr2_2:2751973-2751992 | None:intergenic | 30.0% | |
| ! | ATTGTAGGTCTTTGAGTTTA+GGG | - | chr2_2:2752101-2752120 | None:intergenic | 30.0% |
| ! | AATTGTAGGTCTTTGAGTTT+AGG | - | chr2_2:2752102-2752121 | None:intergenic | 30.0% |
| GATGAAACACATACAATTGT+AGG | - | chr2_2:2752116-2752135 | None:intergenic | 30.0% | |
| ! | TCACTATCTTTCATCCTTTT+TGG | + | chr2_2:2752134-2752153 | Msa0230560:intron | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | chr2_2:2752344-2752363 | None:intergenic | 30.0% |
| !!! | TCAATGTTACAGTTTTGTTG+GGG | + | chr2_2:2752428-2752447 | Msa0230560:intron | 30.0% |
| TAAGCAAAGTAGAGAAAAGT+TGG | - | chr2_2:2752513-2752532 | None:intergenic | 30.0% | |
| ! | ACTTTTCTCTACTTTGCTTA+TGG | + | chr2_2:2752513-2752532 | Msa0230560:CDS | 30.0% |
| TCCTGTAATTAGTGCATAAT+TGG | + | chr2_2:2751108-2751127 | Msa0230560:intron | 30.0% | |
| TCCAATTATGCACTAATTAC+AGG | - | chr2_2:2751112-2751131 | None:intergenic | 30.0% | |
| ! | GTTTCTCATAAACCTCATTT+TGG | + | chr2_2:2751143-2751162 | Msa0230560:intron | 30.0% |
| GGTTTAACCTTTAGATTTGA+AGG | + | chr2_2:2751301-2751320 | Msa0230560:intron | 30.0% | |
| TTTCACTCCTTCAAATCTAA+AGG | - | chr2_2:2751311-2751330 | None:intergenic | 30.0% | |
| !!! | AAAGTTGTTGTTTTTGTGAC+AGG | + | chr2_2:2751382-2751401 | Msa0230560:intron | 30.0% |
| !!! | AAGTTGTTGTTTTTGTGACA+GGG | + | chr2_2:2751383-2751402 | Msa0230560:intron | 30.0% |
| GTTAGGGTAATCATGTTTAA+GGG | - | chr2_2:2751459-2751478 | None:intergenic | 30.0% | |
| CACAATCAAGTATTAGGTTA+GGG | - | chr2_2:2751475-2751494 | None:intergenic | 30.0% | |
| !! | ATTTTCTTGGTTACTGATTG+TGG | + | chr2_2:2751501-2751520 | Msa0230560:intron | 30.0% |
| AAATTGAGAATGGAATGCTT+TGG | + | chr2_2:2751675-2751694 | Msa0230560:CDS | 30.0% | |
| AATTGAGAATGGAATGCTTT+GGG | + | chr2_2:2751676-2751695 | Msa0230560:CDS | 30.0% | |
| CACATCACACAATAAACTTT+AGG | - | chr2_2:2751804-2751823 | None:intergenic | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | + | chr2_2:2751935-2751954 | Msa0230560:CDS | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | - | chr2_2:2751973-2751992 | None:intergenic | 30.0% | |
| ! | ATTGTAGGTCTTTGAGTTTA+GGG | - | chr2_2:2752101-2752120 | None:intergenic | 30.0% |
| ! | AATTGTAGGTCTTTGAGTTT+AGG | - | chr2_2:2752102-2752121 | None:intergenic | 30.0% |
| GATGAAACACATACAATTGT+AGG | - | chr2_2:2752116-2752135 | None:intergenic | 30.0% | |
| ! | TCACTATCTTTCATCCTTTT+TGG | + | chr2_2:2752134-2752153 | Msa0230560:intron | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | chr2_2:2752344-2752363 | None:intergenic | 30.0% |
| !!! | TCAATGTTACAGTTTTGTTG+GGG | + | chr2_2:2752428-2752447 | Msa0230560:intron | 30.0% |
| TAAGCAAAGTAGAGAAAAGT+TGG | - | chr2_2:2752513-2752532 | None:intergenic | 30.0% | |
| ! | ACTTTTCTCTACTTTGCTTA+TGG | + | chr2_2:2752513-2752532 | Msa0230560:CDS | 30.0% |
| TTATACCTGTAAGAAGATCC+TGG | - | chr2_2:2750990-2751009 | None:intergenic | 35.0% | |
| ! | AGTTTTCTGTTTGTGTTCTG+TGG | + | chr2_2:2751280-2751299 | Msa0230560:intron | 35.0% |
| !!! | AGTTGTTGTTTTTGTGACAG+GGG | + | chr2_2:2751384-2751403 | Msa0230560:intron | 35.0% |
| GGTTAGGGTAATCATGTTTA+AGG | - | chr2_2:2751460-2751479 | None:intergenic | 35.0% | |
| CCACAATCAAGTATTAGGTT+AGG | - | chr2_2:2751476-2751495 | None:intergenic | 35.0% | |
| CCTAACCTAATACTTGATTG+TGG | + | chr2_2:2751473-2751492 | Msa0230560:intron | 35.0% | |
| ! | CTTTGGCGATGAATTTTTCT+AGG | + | chr2_2:2751617-2751636 | Msa0230560:intron | 35.0% |
| CATTCTCAATTTCCTTGTAG+GGG | - | chr2_2:2751667-2751686 | None:intergenic | 35.0% | |
| CCATTCTCAATTTCCTTGTA+GGG | - | chr2_2:2751668-2751687 | None:intergenic | 35.0% | |
| TCCATTCTCAATTTCCTTGT+AGG | - | chr2_2:2751669-2751688 | None:intergenic | 35.0% | |
| TGTGATGTGATTATTTGCAG+TGG | + | chr2_2:2751815-2751834 | Msa0230560:intron | 35.0% | |
| GTGATGTGATTATTTGCAGT+GGG | + | chr2_2:2751816-2751835 | Msa0230560:intron | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | - | chr2_2:2752045-2752064 | None:intergenic | 35.0% |
| TTATACCTGTAAGAAGATCC+TGG | - | chr2_2:2750990-2751009 | None:intergenic | 35.0% | |
| ! | AGTTTTCTGTTTGTGTTCTG+TGG | + | chr2_2:2751280-2751299 | Msa0230560:intron | 35.0% |
| !!! | AGTTGTTGTTTTTGTGACAG+GGG | + | chr2_2:2751384-2751403 | Msa0230560:intron | 35.0% |
| GGTTAGGGTAATCATGTTTA+AGG | - | chr2_2:2751460-2751479 | None:intergenic | 35.0% | |
| CCACAATCAAGTATTAGGTT+AGG | - | chr2_2:2751476-2751495 | None:intergenic | 35.0% | |
| CCTAACCTAATACTTGATTG+TGG | + | chr2_2:2751473-2751492 | Msa0230560:intron | 35.0% | |
| ! | CTTTGGCGATGAATTTTTCT+AGG | + | chr2_2:2751617-2751636 | Msa0230560:intron | 35.0% |
| CATTCTCAATTTCCTTGTAG+GGG | - | chr2_2:2751667-2751686 | None:intergenic | 35.0% | |
| CCATTCTCAATTTCCTTGTA+GGG | - | chr2_2:2751668-2751687 | None:intergenic | 35.0% | |
| TCCATTCTCAATTTCCTTGT+AGG | - | chr2_2:2751669-2751688 | None:intergenic | 35.0% | |
| TGTGATGTGATTATTTGCAG+TGG | + | chr2_2:2751815-2751834 | Msa0230560:intron | 35.0% | |
| GTGATGTGATTATTTGCAGT+GGG | + | chr2_2:2751816-2751835 | Msa0230560:intron | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | - | chr2_2:2752045-2752064 | None:intergenic | 35.0% |
| AAGATCCTGGTAAACAAGCA+TGG | - | chr2_2:2750977-2750996 | None:intergenic | 40.0% | |
| GTTTACCAGGATCTTCTTAC+AGG | + | chr2_2:2750982-2751001 | Msa0230560:CDS | 40.0% | |
| CCCTACAAGGAAATTGAGAA+TGG | + | chr2_2:2751665-2751684 | Msa0230560:CDS | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | + | chr2_2:2751826-2751845 | Msa0230560:intron | 40.0% |
| GCACTATTTGCCACAATTCA+AGG | + | chr2_2:2752265-2752284 | Msa0230560:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr2_2:2752268-2752287 | Msa0230560:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr2_2:2752291-2752310 | Msa0230560:intron | 40.0% | |
| CCTTGTAGTAAGCAAACACA+AGG | - | chr2_2:2752476-2752495 | None:intergenic | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | + | chr2_2:2752473-2752492 | Msa0230560:CDS | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | + | chr2_2:2752477-2752496 | Msa0230560:CDS | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | - | chr2_2:2752505-2752524 | None:intergenic | 40.0% | |
| CTACTTTGCTTATGGCTTGA+AGG | + | chr2_2:2752521-2752540 | Msa0230560:CDS | 40.0% | |
| AAGATCCTGGTAAACAAGCA+TGG | - | chr2_2:2750977-2750996 | None:intergenic | 40.0% | |
| GTTTACCAGGATCTTCTTAC+AGG | + | chr2_2:2750982-2751001 | Msa0230560:CDS | 40.0% | |
| CCCTACAAGGAAATTGAGAA+TGG | + | chr2_2:2751665-2751684 | Msa0230560:CDS | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | + | chr2_2:2751826-2751845 | Msa0230560:intron | 40.0% |
| GCACTATTTGCCACAATTCA+AGG | + | chr2_2:2752265-2752284 | Msa0230560:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr2_2:2752268-2752287 | Msa0230560:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr2_2:2752291-2752310 | Msa0230560:intron | 40.0% | |
| CCTTGTAGTAAGCAAACACA+AGG | - | chr2_2:2752476-2752495 | None:intergenic | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | + | chr2_2:2752473-2752492 | Msa0230560:CDS | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | + | chr2_2:2752477-2752496 | Msa0230560:CDS | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | - | chr2_2:2752505-2752524 | None:intergenic | 40.0% | |
| CTACTTTGCTTATGGCTTGA+AGG | + | chr2_2:2752521-2752540 | Msa0230560:CDS | 40.0% | |
| ACAAGCATGGTTGCAGTTGT+TGG | - | chr2_2:2750964-2750983 | None:intergenic | 45.0% | |
| TGCAACCATGCTTGTTTACC+AGG | + | chr2_2:2750969-2750988 | Msa0230560:exon | 45.0% | |
| !! | GAATGGAATGCTTTGGGAAG+TGG | + | chr2_2:2751682-2751701 | Msa0230560:CDS | 45.0% |
| GGAGCAGTGGATGTGAATAT+TGG | + | chr2_2:2751847-2751866 | Msa0230560:CDS | 45.0% | |
| CGATGATCAAGCTGTCAAAG+TGG | + | chr2_2:2751912-2751931 | Msa0230560:CDS | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | + | chr2_2:2751942-2751961 | Msa0230560:CDS | 45.0% | |
| ! | GGTCTTTGAGTTTAGGGAGA+AGG | - | chr2_2:2752095-2752114 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr2_2:2752285-2752304 | Msa0230560:intron | 45.0% |
| ACAAGCATGGTTGCAGTTGT+TGG | - | chr2_2:2750964-2750983 | None:intergenic | 45.0% | |
| TGCAACCATGCTTGTTTACC+AGG | + | chr2_2:2750969-2750988 | Msa0230560:exon | 45.0% | |
| !! | GAATGGAATGCTTTGGGAAG+TGG | + | chr2_2:2751682-2751701 | Msa0230560:CDS | 45.0% |
| GGAGCAGTGGATGTGAATAT+TGG | + | chr2_2:2751847-2751866 | Msa0230560:CDS | 45.0% | |
| CGATGATCAAGCTGTCAAAG+TGG | + | chr2_2:2751912-2751931 | Msa0230560:CDS | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | + | chr2_2:2751942-2751961 | Msa0230560:CDS | 45.0% | |
| ! | GGTCTTTGAGTTTAGGGAGA+AGG | - | chr2_2:2752095-2752114 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr2_2:2752285-2752304 | Msa0230560:intron | 45.0% |
| CTCTGACTCATTCCCCTACA+AGG | + | chr2_2:2751652-2751671 | Msa0230560:CDS | 50.0% | |
| !! | GGAATGCTTTGGGAAGTGGA+AGG | + | chr2_2:2751686-2751705 | Msa0230560:CDS | 50.0% |
| !! | GCTTTGGGAAGTGGAAGGAA+AGG | + | chr2_2:2751691-2751710 | Msa0230560:CDS | 50.0% |
| GGGAAGTGGAAGGAAAGGTT+TGG | + | chr2_2:2751696-2751715 | Msa0230560:intron | 50.0% | |
| ! | TGGTGCTAATCCTTCTGCTG+AGG | + | chr2_2:2751867-2751886 | Msa0230560:CDS | 50.0% |
| GGTGCTAATCCTTCTGCTGA+GGG | + | chr2_2:2751868-2751887 | Msa0230560:CDS | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr2_2:2752273-2752292 | Msa0230560:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr2_2:2752278-2752297 | None:intergenic | 50.0% | |
| CTCTGACTCATTCCCCTACA+AGG | + | chr2_2:2751652-2751671 | Msa0230560:CDS | 50.0% | |
| !! | GGAATGCTTTGGGAAGTGGA+AGG | + | chr2_2:2751686-2751705 | Msa0230560:CDS | 50.0% |
| !! | GCTTTGGGAAGTGGAAGGAA+AGG | + | chr2_2:2751691-2751710 | Msa0230560:CDS | 50.0% |
| GGGAAGTGGAAGGAAAGGTT+TGG | + | chr2_2:2751696-2751715 | Msa0230560:intron | 50.0% | |
| ! | TGGTGCTAATCCTTCTGCTG+AGG | + | chr2_2:2751867-2751886 | Msa0230560:CDS | 50.0% |
| GGTGCTAATCCTTCTGCTGA+GGG | + | chr2_2:2751868-2751887 | Msa0230560:CDS | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr2_2:2752273-2752292 | Msa0230560:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr2_2:2752278-2752297 | None:intergenic | 50.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | + | chr2_2:2751834-2751853 | Msa0230560:intron | 55.0% |
| GCTAATCCTTCTGCTGAGGG+TGG | + | chr2_2:2751871-2751890 | Msa0230560:CDS | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | + | chr2_2:2752447-2752466 | Msa0230560:CDS | 55.0% |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | + | chr2_2:2751834-2751853 | Msa0230560:intron | 55.0% |
| GCTAATCCTTCTGCTGAGGG+TGG | + | chr2_2:2751871-2751890 | Msa0230560:CDS | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | + | chr2_2:2752447-2752466 | Msa0230560:CDS | 55.0% |
| TCGTCTCCACCCTCAGCAGA+AGG | - | chr2_2:2751880-2751899 | None:intergenic | 60.0% | |
| TTCTGCTGAGGGTGGAGACG+AGG | + | chr2_2:2751879-2751898 | Msa0230560:CDS | 60.0% | |
| GAGGGTGGAGACGAGGATGA+TGG | + | chr2_2:2751886-2751905 | Msa0230560:CDS | 60.0% | |
| TCGTCTCCACCCTCAGCAGA+AGG | - | chr2_2:2751880-2751899 | None:intergenic | 60.0% | |
| TTCTGCTGAGGGTGGAGACG+AGG | + | chr2_2:2751879-2751898 | Msa0230560:CDS | 60.0% | |
| GAGGGTGGAGACGAGGATGA+TGG | + | chr2_2:2751886-2751905 | Msa0230560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 2750909 | 2752750 | 2750909 | ID=Msa0230560;Name=Msa0230560 |
| chr2_2 | mRNA | 2750909 | 2752750 | 2750909 | ID=Msa0230560-mRNA-1;Parent=Msa0230560;Name=Msa0230560-mRNA-1;_AED=0.10;_eAED=0.10;_QI=67|1|1|1|1|1|4|193|168 |
| chr2_2 | exon | 2750909 | 2751003 | 2750909 | ID=Msa0230560-mRNA-1:exon:902;Parent=Msa0230560-mRNA-1 |
| chr2_2 | exon | 2751639 | 2751712 | 2751639 | ID=Msa0230560-mRNA-1:exon:903;Parent=Msa0230560-mRNA-1 |
| chr2_2 | exon | 2751835 | 2752121 | 2751835 | ID=Msa0230560-mRNA-1:exon:904;Parent=Msa0230560-mRNA-1 |
| chr2_2 | exon | 2752440 | 2752750 | 2752440 | ID=Msa0230560-mRNA-1:exon:905;Parent=Msa0230560-mRNA-1 |
| chr2_2 | five_prime_UTR | 2750909 | 2750975 | 2750909 | ID=Msa0230560-mRNA-1:five_prime_utr;Parent=Msa0230560-mRNA-1 |
| chr2_2 | CDS | 2750976 | 2751003 | 2750976 | ID=Msa0230560-mRNA-1:cds;Parent=Msa0230560-mRNA-1 |
| chr2_2 | CDS | 2751639 | 2751712 | 2751639 | ID=Msa0230560-mRNA-1:cds;Parent=Msa0230560-mRNA-1 |
| chr2_2 | CDS | 2751835 | 2752121 | 2751835 | ID=Msa0230560-mRNA-1:cds;Parent=Msa0230560-mRNA-1 |
| chr2_2 | CDS | 2752440 | 2752557 | 2752440 | ID=Msa0230560-mRNA-1:cds;Parent=Msa0230560-mRNA-1 |
| chr2_2 | three_prime_UTR | 2752558 | 2752750 | 2752558 | ID=Msa0230560-mRNA-1:three_prime_utr;Parent=Msa0230560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
