Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032860 | sp|Q5J907|TCTP_ELAGV | 90.141 | 142 | 14 | 0 | 1 | 142 | 27 | 168 | 6.34e-91 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0032860 | 0.807427 | 5.081607e-50 | -8.615850e-47 |
| Msa0017320 | Msa0032860 | 0.804547 | 2.050148e-49 | -8.615850e-47 |
| Msa0029850 | Msa0032860 | 0.801847 | 7.422174e-49 | -8.615850e-47 |
| Msa0032860 | Msa0032880 | 0.899397 | 2.063341e-77 | -8.615850e-47 |
| Msa0032860 | Msa0037880 | 0.813047 | 3.118564e-51 | -8.615850e-47 |
| Msa0032860 | Msa0038870 | 0.823293 | 1.497883e-53 | -8.615850e-47 |
| Msa0032860 | Msa0065950 | 0.822204 | 2.684978e-53 | -8.615850e-47 |
| Msa0032860 | Msa0084430 | 0.804079 | 2.566223e-49 | -8.615850e-47 |
| Msa0032860 | Msa0086420 | 0.833778 | 4.386004e-56 | -8.615850e-47 |
| Msa0032860 | Msa0089820 | 0.806797 | 6.909977e-50 | -8.615850e-47 |
| Msa0032860 | Msa0090390 | 0.809205 | 2.122551e-50 | -8.615850e-47 |
| Msa0032860 | Msa0096980 | 0.807925 | 3.983758e-50 | -8.615850e-47 |
| Msa0032860 | Msa0108560 | 0.807235 | 5.581760e-50 | -8.615850e-47 |
| Msa0032860 | Msa0109590 | 0.808526 | 2.965576e-50 | -8.615850e-47 |
| Msa0032860 | Msa0118540 | 0.801658 | 8.116628e-49 | -8.615850e-47 |
| Msa0032860 | Msa0137570 | 0.810419 | 1.163635e-50 | -8.615850e-47 |
| Msa0032860 | Msa0138020 | 0.803321 | 3.686009e-49 | -8.615850e-47 |
| Msa0032860 | Msa0145010 | 0.811328 | 7.397179e-51 | -8.615850e-47 |
| Msa0032860 | Msa0159420 | 0.818937 | 1.510275e-52 | -8.615850e-47 |
| Msa0032860 | Msa0159770 | 0.809197 | 2.131017e-50 | -8.615850e-47 |
| Msa0032860 | Msa0169820 | 0.803050 | 4.193574e-49 | -8.615850e-47 |
| Msa0032860 | Msa0187220 | 0.821830 | 3.277002e-53 | -8.615850e-47 |
| Msa0032860 | Msa0187230 | 0.896106 | 5.070380e-76 | -8.615850e-47 |
| Msa0032860 | Msa0187250 | 0.860141 | 2.539484e-63 | -8.615850e-47 |
| Msa0032860 | Msa0189520 | 0.825976 | 3.494683e-54 | -8.615850e-47 |
| Msa0032860 | Msa0206010 | 0.806132 | 9.543759e-50 | -8.615850e-47 |
| Msa0032860 | Msa0217680 | 0.814767 | 1.302578e-51 | -8.615850e-47 |
| Msa0032860 | Msa0226180 | 0.803282 | 3.754786e-49 | -8.615850e-47 |
| Msa0032860 | Msa0230560 | 0.807364 | 5.239316e-50 | -8.615850e-47 |
| Msa0032860 | Msa0231790 | 0.800007 | 1.763476e-48 | -8.615850e-47 |
| Msa0032860 | Msa0233370 | 0.822084 | 2.862034e-53 | -8.615850e-47 |
| Msa0032860 | Msa0233380 | 0.801117 | 1.047462e-48 | -8.615850e-47 |
| Msa0032860 | Msa0257500 | 0.817292 | 3.556708e-52 | -8.615850e-47 |
| Msa0032860 | Msa0261720 | 0.810971 | 8.837846e-51 | -8.615850e-47 |
| Msa0032860 | Msa0271360 | 0.854568 | 1.128776e-61 | -8.615850e-47 |
| Msa0032860 | Msa0287410 | 0.802547 | 5.326834e-49 | -8.615850e-47 |
| Msa0032860 | Msa0290760 | 0.813807 | 2.123587e-51 | -8.615850e-47 |
| Msa0032860 | Msa0304840 | 0.808179 | 3.517503e-50 | -8.615850e-47 |
| Msa0032860 | Msa0309880 | 0.827286 | 1.701748e-54 | -8.615850e-47 |
| Msa0032860 | Msa0311720 | 0.828868 | 7.074907e-55 | -8.615850e-47 |
| Msa0032860 | Msa0311730 | 0.800366 | 1.490953e-48 | -8.615850e-47 |
| Msa0032860 | Msa0319170 | 0.824364 | 8.401477e-54 | -8.615850e-47 |
| Msa0032860 | Msa0326110 | 0.802610 | 5.170252e-49 | -8.615850e-47 |
| Msa0032860 | Msa0326520 | 0.804472 | 2.125491e-49 | -8.615850e-47 |
| Msa0032860 | Msa0341230 | 0.802858 | 4.594525e-49 | -8.615850e-47 |
| Msa0032860 | Msa0347610 | 0.818825 | 1.601732e-52 | -8.615850e-47 |
| Msa0032860 | Msa0369440 | 0.803193 | 3.917124e-49 | -8.615850e-47 |
| Msa0032860 | Msa0376910 | 0.825999 | 3.450713e-54 | -8.615850e-47 |
| Msa0032860 | Msa0385490 | 0.806341 | 8.623902e-50 | -8.615850e-47 |
| Msa0032860 | Msa0387280 | 0.806100 | 9.690778e-50 | -8.615850e-47 |
| Msa0032860 | Msa0389810 | 0.820645 | 6.148129e-53 | -8.615850e-47 |
| Msa0032860 | Msa0392270 | 0.821109 | 4.807163e-53 | -8.615850e-47 |
| Msa0032860 | Msa0394340 | 0.816185 | 6.298223e-52 | -8.615850e-47 |
| Msa0032860 | Msa0401560 | 0.802811 | 4.699118e-49 | -8.615850e-47 |
| Msa0032860 | Msa0408390 | 0.808565 | 2.909528e-50 | -8.615850e-47 |
| Msa0032860 | Msa0412840 | 0.833231 | 6.007079e-56 | -8.615850e-47 |
| Msa0032860 | Msa0433410 | -0.806719 | 7.175309e-50 | -8.615850e-47 |
| Msa0032860 | Msa0442200 | 0.835711 | 1.431524e-56 | -8.615850e-47 |
| Msa0032860 | Msa0442610 | 0.800456 | 1.429184e-48 | -8.615850e-47 |
| Msa0032860 | Msa0457510 | 0.820343 | 7.213614e-53 | -8.615850e-47 |
| Msa0032860 | Msa0468130 | 0.810798 | 9.635263e-51 | -8.615850e-47 |
| Msa0032860 | Msa0471900 | 0.829882 | 4.013962e-55 | -8.615850e-47 |
| Msa0032860 | Msa0472960 | -0.811899 | 5.558154e-51 | -8.615850e-47 |
| Msa0032860 | Msa0473830 | -0.803297 | 3.727825e-49 | -8.615850e-47 |
| Msa0032860 | Msa0477130 | -0.825462 | 4.627135e-54 | -8.615850e-47 |
| Msa0032860 | Msa0477260 | 0.804939 | 1.697926e-49 | -8.615850e-47 |
| Msa0032860 | Msa0482180 | 0.801875 | 7.325931e-49 | -8.615850e-47 |
| Msa0032860 | Msa0485680 | 0.806080 | 9.784148e-50 | -8.615850e-47 |
| Msa0032860 | Msa0489610 | 0.821368 | 4.191215e-53 | -8.615850e-47 |
| Msa0032860 | Msa0518070 | -0.805235 | 1.472474e-49 | -8.615850e-47 |
| Msa0032860 | Msa0521740 | 0.820718 | 5.913751e-53 | -8.615850e-47 |
| Msa0032860 | Msa0534410 | 0.819064 | 1.412836e-52 | -8.615850e-47 |
| Msa0032860 | Msa0542290 | 0.804286 | 2.323689e-49 | -8.615850e-47 |
| Msa0032860 | Msa0575470 | 0.804418 | 2.180496e-49 | -8.615850e-47 |
| Msa0032860 | Msa0588240 | 0.832910 | 7.216761e-56 | -8.615850e-47 |
| Msa0032860 | Msa0590650 | 0.824543 | 7.626676e-54 | -8.615850e-47 |
| Msa0032860 | Msa0600450 | 0.800938 | 1.139770e-48 | -8.615850e-47 |
| Msa0032860 | Msa0610130 | 0.837587 | 4.760057e-57 | -8.615850e-47 |
| Msa0032860 | Msa0610180 | 0.812115 | 4.985998e-51 | -8.615850e-47 |
| Msa0032860 | Msa0628290 | 0.806160 | 9.412768e-50 | -8.615850e-47 |
| Msa0032860 | Msa0628740 | 0.814584 | 1.430520e-51 | -8.615850e-47 |
| Msa0032860 | Msa0630950 | 0.818172 | 2.251983e-52 | -8.615850e-47 |
| Msa0032860 | Msa0666140 | 0.814886 | 1.226090e-51 | -8.615850e-47 |
| Msa0032860 | Msa0679360 | 0.800989 | 1.112269e-48 | -8.615850e-47 |
| Msa0032860 | Msa0703910 | 0.816722 | 4.776928e-52 | -8.615850e-47 |
| Msa0032860 | Msa0709160 | 0.801280 | 9.701768e-49 | -8.615850e-47 |
| Msa0032860 | Msa0721280 | 0.812978 | 3.229666e-51 | -8.615850e-47 |
| Msa0032860 | Msa0747260 | 0.869565 | 2.815441e-66 | -8.615850e-47 |
| Msa0032860 | Msa0747270 | 0.839809 | 1.268979e-57 | -8.615850e-47 |
| Msa0032860 | Msa0749440 | 0.804098 | 2.542105e-49 | -8.615850e-47 |
| Msa0032860 | Msa0750850 | 0.808125 | 3.611706e-50 | -8.615850e-47 |
| Msa0032860 | Msa0751850 | 0.808068 | 3.713183e-50 | -8.615850e-47 |
| Msa0032860 | Msa0760350 | 0.817769 | 2.777228e-52 | -8.615850e-47 |
| Msa0032860 | Msa0763890 | 0.803451 | 3.464170e-49 | -8.615850e-47 |
| Msa0032860 | Msa0763920 | 0.804366 | 2.236199e-49 | -8.615850e-47 |
| Msa0032860 | Msa0773850 | 0.801657 | 8.118937e-49 | -8.615850e-47 |
| Msa0032860 | Msa0793240 | 0.802702 | 4.950183e-49 | -8.615850e-47 |
| Msa0032860 | Msa0801730 | 0.822905 | 1.844744e-53 | -8.615850e-47 |
| Msa0032860 | Msa0801740 | 0.810437 | 1.153416e-50 | -8.615850e-47 |
| Msa0032860 | Msa0817460 | 0.817386 | 3.388089e-52 | -8.615850e-47 |
| Msa0032860 | Msa0818170 | 0.804217 | 2.401339e-49 | -8.615850e-47 |
| Msa0032860 | Msa0818890 | 0.811919 | 5.503154e-51 | -8.615850e-47 |
| Msa0032860 | Msa0831850 | 0.807176 | 5.744371e-50 | -8.615850e-47 |
| Msa0032860 | Msa0861470 | 0.804986 | 1.659688e-49 | -8.615850e-47 |
| Msa0032860 | Msa0861570 | 0.808724 | 2.690607e-50 | -8.615850e-47 |
| Msa0032860 | Msa0864470 | -0.805747 | 1.149472e-49 | -8.615850e-47 |
| Msa0032860 | Msa0869120 | 0.814540 | 1.462751e-51 | -8.615850e-47 |
| Msa0032860 | Msa0872440 | 0.830648 | 2.609191e-55 | -8.615850e-47 |
| Msa0032860 | Msa0879860 | 0.804747 | 1.862129e-49 | -8.615850e-47 |
| Msa0032860 | Msa0890550 | 0.814533 | 1.467970e-51 | -8.615850e-47 |
| Msa0032860 | Msa0918390 | 0.811503 | 6.777410e-51 | -8.615850e-47 |
| Msa0032860 | Msa0930140 | 0.800255 | 1.570482e-48 | -8.615850e-47 |
| Msa0032860 | Msa0945120 | 0.812129 | 4.951212e-51 | -8.615850e-47 |
| Msa0032860 | Msa0962840 | 0.807741 | 4.358188e-50 | -8.615850e-47 |
| Msa0032860 | Msa0982270 | 0.812817 | 3.502028e-51 | -8.615850e-47 |
| Msa0032860 | Msa0990580 | 0.814632 | 1.395652e-51 | -8.615850e-47 |
| Msa0032860 | Msa0994370 | 0.850191 | 1.991763e-60 | -8.615850e-47 |
| Msa0032860 | Msa1023180 | 0.805184 | 1.508836e-49 | -8.615850e-47 |
| Msa0032860 | Msa1029080 | -0.814615 | 1.407894e-51 | -8.615850e-47 |
| Msa0032860 | Msa1043050 | 0.810359 | 1.198737e-50 | -8.615850e-47 |
| Msa0032860 | Msa1063420 | 0.806828 | 6.805195e-50 | -8.615850e-47 |
| Msa0032860 | Msa1068870 | 0.814526 | 1.473004e-51 | -8.615850e-47 |
| Msa0032860 | Msa1071320 | 0.810613 | 1.056679e-50 | -8.615850e-47 |
| Msa0032860 | Msa1080270 | 0.811430 | 7.028002e-51 | -8.615850e-47 |
| Msa0032860 | Msa1081790 | -0.808764 | 2.638897e-50 | -8.615850e-47 |
| Msa0032860 | Msa1124540 | -0.800553 | 1.365426e-48 | -8.615850e-47 |
| Msa0032860 | Msa1150710 | 0.808539 | 2.947371e-50 | -8.615850e-47 |
| Msa0032860 | Msa1156170 | -0.812806 | 3.521640e-51 | -8.615850e-47 |
| Msa0032860 | Msa1168580 | 0.807236 | 5.577129e-50 | -8.615850e-47 |
| Msa0032860 | Msa1177780 | 0.811511 | 6.749525e-51 | -8.615850e-47 |
| Msa0032860 | Msa1183100 | -0.816582 | 5.133340e-52 | -8.615850e-47 |
| Msa0032860 | Msa1186360 | 0.801595 | 8.362390e-49 | -8.615850e-47 |
| Msa0032860 | Msa1188600 | -0.824770 | 6.740012e-54 | -8.615850e-47 |
| Msa0032860 | Msa1216720 | 0.803952 | 2.726578e-49 | -8.615850e-47 |
| Msa0032860 | Msa1224580 | -0.800944 | 1.136252e-48 | -8.615850e-47 |
| Msa0032860 | Msa1237980 | 0.809804 | 1.578726e-50 | -8.615850e-47 |
| Msa0032860 | Msa1242580 | -0.811519 | 6.722947e-51 | -8.615850e-47 |
| Msa0032860 | Msa1263290 | -0.817303 | 3.536180e-52 | -8.615850e-47 |
| Msa0032860 | Msa1267520 | 0.805610 | 1.228532e-49 | -8.615850e-47 |
| Msa0032860 | Msa1270660 | 0.842823 | 2.043587e-58 | -8.615850e-47 |
| Msa0032860 | Msa1270730 | 0.824201 | 9.174746e-54 | -8.615850e-47 |
| Msa0032860 | Msa1276440 | 0.810940 | 8.978775e-51 | -8.615850e-47 |
| Msa0032860 | Msa1295930 | 0.801923 | 7.159350e-49 | -8.615850e-47 |
| Msa0032860 | Msa1305190 | 0.804400 | 2.200187e-49 | -8.615850e-47 |
| Msa0032860 | Msa1305340 | 0.814648 | 1.384307e-51 | -8.615850e-47 |
| Msa0032860 | Msa1305350 | 0.813407 | 2.600059e-51 | -8.615850e-47 |
| Msa0032860 | Msa1307740 | 0.815932 | 7.175620e-52 | -8.615850e-47 |
| Msa0032860 | Msa1310400 | 0.801036 | 1.087962e-48 | -8.615850e-47 |
| Msa0032860 | Msa1333420 | 0.814598 | 1.420271e-51 | -8.615850e-47 |
| Msa0032860 | Msa1335230 | 0.802301 | 5.988098e-49 | -8.615850e-47 |
| Msa0032860 | Msa1337480 | 0.806918 | 6.512658e-50 | -8.615850e-47 |
| Msa0032860 | Msa1345220 | 0.810595 | 1.065989e-50 | -8.615850e-47 |
| Msa0032860 | Msa1348600 | 0.805952 | 1.041031e-49 | -8.615850e-47 |
| Msa0032860 | Msa1357430 | 0.811388 | 7.179719e-51 | -8.615850e-47 |
| Msa0032860 | Msa1357890 | 0.818784 | 1.636458e-52 | -8.615850e-47 |
| Msa0032860 | Msa1371940 | 0.801319 | 9.525046e-49 | -8.615850e-47 |
| Msa0032860 | Msa1376130 | 0.824157 | 9.395767e-54 | -8.615850e-47 |
| Msa0032860 | Msa1377570 | 0.819944 | 8.899223e-53 | -8.615850e-47 |
| Msa0032860 | Msa1397120 | 0.831383 | 1.722331e-55 | -8.615850e-47 |
| Msa0032860 | Msa1398090 | 0.813952 | 1.972118e-51 | -8.615850e-47 |
| Msa0032860 | Msa1403340 | 0.815281 | 1.002084e-51 | -8.615850e-47 |
| Msa0032860 | Msa1403890 | 0.824899 | 6.284078e-54 | -8.615850e-47 |
| Msa0032860 | Msa1419640 | 0.808244 | 3.407000e-50 | -8.615850e-47 |
| Msa0032860 | Msa1443610 | 0.818140 | 2.290082e-52 | -8.615850e-47 |
| Msa0032860 | Msa1448630 | 0.808948 | 2.409495e-50 | -8.615850e-47 |
| Msa0032860 | Msa1454950 | 0.832404 | 9.637795e-56 | -8.615850e-47 |
| Msa0032860 | Msa1458610 | 0.808561 | 2.915598e-50 | -8.615850e-47 |
| Msa0032860 | Msa1462060 | 0.821208 | 4.562157e-53 | -8.615850e-47 |
| Msa0032860 | Msa1462070 | 0.847841 | 8.958235e-60 | -8.615850e-47 |
| Msa0032860 | Msa1465850 | 0.830303 | 3.168722e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032860 | MtrunA17_Chr1g0192171 | 99.296 | 142 | 1 | 0 | 1 | 142 | 27 | 168 | 7.57e-102 | 288 |
| Msa0032860 | MtrunA17_Chr1g0192201 | 98.592 | 142 | 2 | 0 | 1 | 142 | 27 | 168 | 1.07e-100 | 285 |
| Msa0032860 | MtrunA17_Chr2g0295871 | 84.507 | 142 | 21 | 1 | 1 | 142 | 27 | 167 | 8.64e-84 | 243 |
| Msa0032860 | MtrunA17_Chr1g0192161 | 97.345 | 113 | 3 | 0 | 9 | 121 | 25 | 137 | 1.17e-75 | 221 |
| Msa0032860 | MtrunA17_Chr6g0479151 | 80.741 | 135 | 25 | 1 | 1 | 135 | 27 | 160 | 2.40e-73 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032860 | AT3G16640.1 | 75.352 | 142 | 35 | 0 | 1 | 142 | 27 | 168 | 4.38e-77 | 226 |
| Msa0032860 | AT3G05540.1 | 77.622 | 143 | 30 | 2 | 1 | 142 | 27 | 168 | 1.65e-70 | 209 |
Find 32 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACATTGTTGACACTTTC+AGG | 0.150814 | 1_1:+60018057 | Msa0032860:CDS |
| AATTGTAGGTCTTTGAGTTT+TGG | 0.259902 | 1_1:-60018221 | None:intergenic |
| TGTTTAAATTGATGTTTAAT+TGG | 0.308821 | 1_1:+60018495 | Msa0032860:three_prime_UTR |
| TGTTGACACTTTCAGGCTTC+AGG | 0.327729 | 1_1:+60018064 | Msa0032860:CDS |
| CTACTTTGCTTATGGCTTGA+AGG | 0.363173 | 1_1:+60018434 | Msa0032860:CDS |
| TCCGTTCTCAATTTCCTTGT+AGG | 0.371448 | 1_1:-60017788 | None:intergenic |
| GATGAAATACATACAATTGT+AGG | 0.374980 | 1_1:-60018235 | None:intergenic |
| AATTGAGAACGGAATGCTTT+GGG | 0.399647 | 1_1:+60017798 | Msa0032860:exon |
| CCGTTCTCAATTTCCTTGTA+GGG | 0.410758 | 1_1:-60017787 | None:intergenic |
| GAACGGAATGCTTTGGGAAG+TGG | 0.428530 | 1_1:+60017804 | Msa0032860:exon |
| AATTGCTTCTTATCAAAAGC+TGG | 0.428621 | 1_1:-60018092 | None:intergenic |
| AAATTGAGAACGGAATGCTT+TGG | 0.446609 | 1_1:+60017797 | Msa0032860:exon |
| TAAGCAAAGTAGAGAAAAGT+TGG | 0.453692 | 1_1:-60018423 | None:intergenic |
| GTGTTTGCTTACTACAAAGA+TGG | 0.481773 | 1_1:+60018390 | Msa0032860:CDS |
| CTCTGACTCATTCCCCTACA+AGG | 0.486361 | 1_1:+60017774 | Msa0032860:five_prime_UTR |
| CTTTGTTGATGAATTTGTCT+AGG | 0.516142 | 1_1:+60017739 | Msa0032860:five_prime_UTR |
| GCTTTGGGAAGTGGAAGGAA+AGG | 0.531642 | 1_1:+60017813 | Msa0032860:CDS |
| TCATCTCCGCCCTCAGCAGA+AGG | 0.531916 | 1_1:-60017999 | None:intergenic |
| TGGTGCTAATCCTTCTGCTG+AGG | 0.536435 | 1_1:+60017989 | Msa0032860:CDS |
| CGTTCTCAATTTCCTTGTAG+GGG | 0.538126 | 1_1:-60017786 | None:intergenic |
| TTCTGCTGAGGGCGGAGATG+AGG | 0.539950 | 1_1:+60018001 | Msa0032860:CDS |
| GGTGCTAATCCTTCTGCTGA+GGG | 0.547301 | 1_1:+60017990 | Msa0032860:CDS |
| GGGGAGAGCATGCATGATGA+TGG | 0.565967 | 1_1:+60018360 | Msa0032860:CDS |
| CTTTGTAGTAAGCAAACACA+AGG | 0.596130 | 1_1:-60018386 | None:intergenic |
| CCCTACAAGGAAATTGAGAA+CGG | 0.603248 | 1_1:+60017787 | Msa0032860:five_prime_UTR |
| GTAGAGAAAAGTTGGATCAG+TGG | 0.605758 | 1_1:-60018415 | None:intergenic |
| TGATGATCAAGCTGTGAAAG+TGG | 0.621314 | 1_1:+60018034 | Msa0032860:CDS |
| GCTAATCCTTCTGCTGAGGG+CGG | 0.631354 | 1_1:+60017993 | Msa0032860:CDS |
| GTGGGTTGTTCAAGGAGCAG+TGG | 0.636439 | 1_1:+60017956 | Msa0032860:intron |
| GGAGCAGTGGATGTGAACAT+TGG | 0.696184 | 1_1:+60017969 | Msa0032860:CDS |
| GGAATGCTTTGGGAAGTGGA+AGG | 0.706482 | 1_1:+60017808 | Msa0032860:exon |
| GAGGGCGGAGATGAGGACGA+CGG | 0.740386 | 1_1:+60018008 | Msa0032860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTACATTTTATTTTTATA+TGG | + | chr1_1:60018584-60018603 | Msa0032860:three_prime_UTR | 10.0% |
| !!! | GATTACATTTTATTTTTATA+TGG | + | chr1_1:60018584-60018603 | Msa0032860:three_prime_UTR | 10.0% |
| !!! | ATTATTTTTCATCTCTTTTT+TGG | + | chr1_1:60018258-60018277 | Msa0032860:intron | 15.0% |
| !! | TGTTTAAATTGATGTTTAAT+TGG | + | chr1_1:60018495-60018514 | Msa0032860:three_prime_UTR | 15.0% |
| !!! | TGAATTTTTAAGTTCTAATT+AGG | + | chr1_1:60018548-60018567 | Msa0032860:three_prime_UTR | 15.0% |
| !!! | ATTATTTTTCATCTCTTTTT+TGG | + | chr1_1:60018258-60018277 | Msa0032860:intron | 15.0% |
| !! | TGTTTAAATTGATGTTTAAT+TGG | + | chr1_1:60018495-60018514 | Msa0032860:three_prime_UTR | 15.0% |
| !!! | TGAATTTTTAAGTTCTAATT+AGG | + | chr1_1:60018548-60018567 | Msa0032860:three_prime_UTR | 15.0% |
| !!! | ATTAAGTTTTCTCTTTTTTG+TGG | + | chr1_1:60018285-60018304 | Msa0032860:intron | 20.0% |
| !!! | ATTTTTAAGTTCTAATTAGG+AGG | + | chr1_1:60018551-60018570 | Msa0032860:three_prime_UTR | 20.0% |
| !!! | ATTAAGTTTTCTCTTTTTTG+TGG | + | chr1_1:60018285-60018304 | Msa0032860:intron | 20.0% |
| !!! | ATTTTTAAGTTCTAATTAGG+AGG | + | chr1_1:60018551-60018570 | Msa0032860:three_prime_UTR | 20.0% |
| ! | GATGAAATACATACAATTGT+AGG | - | chr1_1:60018238-60018257 | None:intergenic | 25.0% |
| ! | GATGAAATACATACAATTGT+AGG | - | chr1_1:60018238-60018257 | None:intergenic | 25.0% |
| ! | CTTTGTTGATGAATTTGTCT+AGG | + | chr1_1:60017739-60017758 | Msa0032860:five_prime_UTR | 30.0% |
| CTGACATAAAAACTAAAGCA+TGG | - | chr1_1:60017881-60017900 | None:intergenic | 30.0% | |
| CACATTACACAGTATACTTT+AGG | - | chr1_1:60017926-60017945 | None:intergenic | 30.0% | |
| !!! | TGTAATGTGATTTTTTGCAG+TGG | + | chr1_1:60017937-60017956 | Msa0032860:intron | 30.0% |
| !!! | GTAATGTGATTTTTTGCAGT+GGG | + | chr1_1:60017938-60017957 | Msa0032860:intron | 30.0% |
| AATTGCTTCTTATCAAAAGC+TGG | - | chr1_1:60018095-60018114 | None:intergenic | 30.0% | |
| !! | ATTGTAGGTCTTTGAGTTTT+GGG | - | chr1_1:60018223-60018242 | None:intergenic | 30.0% |
| !! | AATTGTAGGTCTTTGAGTTT+TGG | - | chr1_1:60018224-60018243 | None:intergenic | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | + | chr1_1:60018340-60018359 | Msa0032860:intron | 30.0% |
| TAAGCAAAGTAGAGAAAAGT+TGG | - | chr1_1:60018426-60018445 | None:intergenic | 30.0% | |
| ! | ACTTTTCTCTACTTTGCTTA+TGG | + | chr1_1:60018426-60018445 | Msa0032860:CDS | 30.0% |
| ! | CTTTGTTGATGAATTTGTCT+AGG | + | chr1_1:60017739-60017758 | Msa0032860:five_prime_UTR | 30.0% |
| CTGACATAAAAACTAAAGCA+TGG | - | chr1_1:60017881-60017900 | None:intergenic | 30.0% | |
| CACATTACACAGTATACTTT+AGG | - | chr1_1:60017926-60017945 | None:intergenic | 30.0% | |
| !!! | TGTAATGTGATTTTTTGCAG+TGG | + | chr1_1:60017937-60017956 | Msa0032860:intron | 30.0% |
| !!! | GTAATGTGATTTTTTGCAGT+GGG | + | chr1_1:60017938-60017957 | Msa0032860:intron | 30.0% |
| AATTGCTTCTTATCAAAAGC+TGG | - | chr1_1:60018095-60018114 | None:intergenic | 30.0% | |
| !! | ATTGTAGGTCTTTGAGTTTT+GGG | - | chr1_1:60018223-60018242 | None:intergenic | 30.0% |
| !! | AATTGTAGGTCTTTGAGTTT+TGG | - | chr1_1:60018224-60018243 | None:intergenic | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | + | chr1_1:60018340-60018359 | Msa0032860:intron | 30.0% |
| TAAGCAAAGTAGAGAAAAGT+TGG | - | chr1_1:60018426-60018445 | None:intergenic | 30.0% | |
| ! | ACTTTTCTCTACTTTGCTTA+TGG | + | chr1_1:60018426-60018445 | Msa0032860:CDS | 30.0% |
| AAATTGAGAACGGAATGCTT+TGG | + | chr1_1:60017797-60017816 | Msa0032860:exon | 35.0% | |
| AATTGAGAACGGAATGCTTT+GGG | + | chr1_1:60017798-60017817 | Msa0032860:exon | 35.0% | |
| TTGACATTGTTGACACTTTC+AGG | + | chr1_1:60018057-60018076 | Msa0032860:CDS | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | - | chr1_1:60018167-60018186 | None:intergenic | 35.0% |
| !! | CATCAATGTTGCAGTTTTGT+TGG | + | chr1_1:60018339-60018358 | Msa0032860:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | + | chr1_1:60018341-60018360 | Msa0032860:intron | 35.0% |
| CTTTGTAGTAAGCAAACACA+AGG | - | chr1_1:60018389-60018408 | None:intergenic | 35.0% | |
| GTGTTTGCTTACTACAAAGA+TGG | + | chr1_1:60018390-60018409 | Msa0032860:CDS | 35.0% | |
| AAATTGAGAACGGAATGCTT+TGG | + | chr1_1:60017797-60017816 | Msa0032860:exon | 35.0% | |
| AATTGAGAACGGAATGCTTT+GGG | + | chr1_1:60017798-60017817 | Msa0032860:exon | 35.0% | |
| TTGACATTGTTGACACTTTC+AGG | + | chr1_1:60018057-60018076 | Msa0032860:CDS | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | - | chr1_1:60018167-60018186 | None:intergenic | 35.0% |
| !! | CATCAATGTTGCAGTTTTGT+TGG | + | chr1_1:60018339-60018358 | Msa0032860:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | + | chr1_1:60018341-60018360 | Msa0032860:intron | 35.0% |
| CTTTGTAGTAAGCAAACACA+AGG | - | chr1_1:60018389-60018408 | None:intergenic | 35.0% | |
| GTGTTTGCTTACTACAAAGA+TGG | + | chr1_1:60018390-60018409 | Msa0032860:CDS | 35.0% | |
| CGTTCTCAATTTCCTTGTAG+GGG | - | chr1_1:60017789-60017808 | None:intergenic | 40.0% | |
| CCGTTCTCAATTTCCTTGTA+GGG | - | chr1_1:60017790-60017809 | None:intergenic | 40.0% | |
| CCCTACAAGGAAATTGAGAA+CGG | + | chr1_1:60017787-60017806 | Msa0032860:five_prime_UTR | 40.0% | |
| TCCGTTCTCAATTTCCTTGT+AGG | - | chr1_1:60017791-60017810 | None:intergenic | 40.0% | |
| !!! | TTTTTGCAGTGGGTTGTTCA+AGG | + | chr1_1:60017948-60017967 | Msa0032860:intron | 40.0% |
| TGATGATCAAGCTGTGAAAG+TGG | + | chr1_1:60018034-60018053 | Msa0032860:CDS | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | - | chr1_1:60018418-60018437 | None:intergenic | 40.0% | |
| CTACTTTGCTTATGGCTTGA+AGG | + | chr1_1:60018434-60018453 | Msa0032860:CDS | 40.0% | |
| CGTTCTCAATTTCCTTGTAG+GGG | - | chr1_1:60017789-60017808 | None:intergenic | 40.0% | |
| CCGTTCTCAATTTCCTTGTA+GGG | - | chr1_1:60017790-60017809 | None:intergenic | 40.0% | |
| CCCTACAAGGAAATTGAGAA+CGG | + | chr1_1:60017787-60017806 | Msa0032860:five_prime_UTR | 40.0% | |
| TCCGTTCTCAATTTCCTTGT+AGG | - | chr1_1:60017791-60017810 | None:intergenic | 40.0% | |
| !!! | TTTTTGCAGTGGGTTGTTCA+AGG | + | chr1_1:60017948-60017967 | Msa0032860:intron | 40.0% |
| TGATGATCAAGCTGTGAAAG+TGG | + | chr1_1:60018034-60018053 | Msa0032860:CDS | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | - | chr1_1:60018418-60018437 | None:intergenic | 40.0% | |
| CTACTTTGCTTATGGCTTGA+AGG | + | chr1_1:60018434-60018453 | Msa0032860:CDS | 40.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | + | chr1_1:60018064-60018083 | Msa0032860:CDS | 45.0% | |
| !!! | GTAGGTCTTTGAGTTTTGGG+AGG | - | chr1_1:60018220-60018239 | None:intergenic | 45.0% |
| TGTTGACACTTTCAGGCTTC+AGG | + | chr1_1:60018064-60018083 | Msa0032860:CDS | 45.0% | |
| !!! | GTAGGTCTTTGAGTTTTGGG+AGG | - | chr1_1:60018220-60018239 | None:intergenic | 45.0% |
| CTCTGACTCATTCCCCTACA+AGG | + | chr1_1:60017774-60017793 | Msa0032860:five_prime_UTR | 50.0% | |
| !! | GAACGGAATGCTTTGGGAAG+TGG | + | chr1_1:60017804-60017823 | Msa0032860:exon | 50.0% |
| !! | GGAATGCTTTGGGAAGTGGA+AGG | + | chr1_1:60017808-60017827 | Msa0032860:exon | 50.0% |
| !! | GCTTTGGGAAGTGGAAGGAA+AGG | + | chr1_1:60017813-60017832 | Msa0032860:CDS | 50.0% |
| GGGAAGTGGAAGGAAAGGTT+TGG | + | chr1_1:60017818-60017837 | Msa0032860:intron | 50.0% | |
| GGAGCAGTGGATGTGAACAT+TGG | + | chr1_1:60017969-60017988 | Msa0032860:CDS | 50.0% | |
| ! | TGGTGCTAATCCTTCTGCTG+AGG | + | chr1_1:60017989-60018008 | Msa0032860:CDS | 50.0% |
| GGTGCTAATCCTTCTGCTGA+GGG | + | chr1_1:60017990-60018009 | Msa0032860:CDS | 50.0% | |
| CTCTGACTCATTCCCCTACA+AGG | + | chr1_1:60017774-60017793 | Msa0032860:five_prime_UTR | 50.0% | |
| !! | GAACGGAATGCTTTGGGAAG+TGG | + | chr1_1:60017804-60017823 | Msa0032860:exon | 50.0% |
| !! | GGAATGCTTTGGGAAGTGGA+AGG | + | chr1_1:60017808-60017827 | Msa0032860:exon | 50.0% |
| !! | GCTTTGGGAAGTGGAAGGAA+AGG | + | chr1_1:60017813-60017832 | Msa0032860:CDS | 50.0% |
| GGGAAGTGGAAGGAAAGGTT+TGG | + | chr1_1:60017818-60017837 | Msa0032860:intron | 50.0% | |
| GGAGCAGTGGATGTGAACAT+TGG | + | chr1_1:60017969-60017988 | Msa0032860:CDS | 50.0% | |
| ! | TGGTGCTAATCCTTCTGCTG+AGG | + | chr1_1:60017989-60018008 | Msa0032860:CDS | 50.0% |
| GGTGCTAATCCTTCTGCTGA+GGG | + | chr1_1:60017990-60018009 | Msa0032860:CDS | 50.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | + | chr1_1:60017956-60017975 | Msa0032860:intron | 55.0% |
| GCTAATCCTTCTGCTGAGGG+CGG | + | chr1_1:60017993-60018012 | Msa0032860:CDS | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | + | chr1_1:60018360-60018379 | Msa0032860:CDS | 55.0% |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | + | chr1_1:60017956-60017975 | Msa0032860:intron | 55.0% |
| GCTAATCCTTCTGCTGAGGG+CGG | + | chr1_1:60017993-60018012 | Msa0032860:CDS | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | + | chr1_1:60018360-60018379 | Msa0032860:CDS | 55.0% |
| TCATCTCCGCCCTCAGCAGA+AGG | - | chr1_1:60018002-60018021 | None:intergenic | 60.0% | |
| TTCTGCTGAGGGCGGAGATG+AGG | + | chr1_1:60018001-60018020 | Msa0032860:CDS | 60.0% | |
| TCATCTCCGCCCTCAGCAGA+AGG | - | chr1_1:60018002-60018021 | None:intergenic | 60.0% | |
| TTCTGCTGAGGGCGGAGATG+AGG | + | chr1_1:60018001-60018020 | Msa0032860:CDS | 60.0% | |
| GAGGGCGGAGATGAGGACGA+CGG | + | chr1_1:60018008-60018027 | Msa0032860:CDS | 65.0% | |
| GAGGGCGGAGATGAGGACGA+CGG | + | chr1_1:60018008-60018027 | Msa0032860:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 60017715 | 60018623 | 60017715 | ID=Msa0032860;Name=Msa0032860 |
| chr1_1 | mRNA | 60017715 | 60018623 | 60017715 | ID=Msa0032860-mRNA-1;Parent=Msa0032860;Name=Msa0032860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=96|1|1|1|1|1|3|153|142 |
| chr1_1 | exon | 60017715 | 60017834 | 60017715 | ID=Msa0032860-mRNA-1:exon:18689;Parent=Msa0032860-mRNA-1 |
| chr1_1 | exon | 60017957 | 60018243 | 60017957 | ID=Msa0032860-mRNA-1:exon:18690;Parent=Msa0032860-mRNA-1 |
| chr1_1 | exon | 60018353 | 60018623 | 60018353 | ID=Msa0032860-mRNA-1:exon:18691;Parent=Msa0032860-mRNA-1 |
| chr1_1 | five_prime_UTR | 60017715 | 60017810 | 60017715 | ID=Msa0032860-mRNA-1:five_prime_utr;Parent=Msa0032860-mRNA-1 |
| chr1_1 | CDS | 60017811 | 60017834 | 60017811 | ID=Msa0032860-mRNA-1:cds;Parent=Msa0032860-mRNA-1 |
| chr1_1 | CDS | 60017957 | 60018243 | 60017957 | ID=Msa0032860-mRNA-1:cds;Parent=Msa0032860-mRNA-1 |
| chr1_1 | CDS | 60018353 | 60018470 | 60018353 | ID=Msa0032860-mRNA-1:cds;Parent=Msa0032860-mRNA-1 |
| chr1_1 | three_prime_UTR | 60018471 | 60018623 | 60018471 | ID=Msa0032860-mRNA-1:three_prime_utr;Parent=Msa0032860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
