Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032880 | sp|Q5J907|TCTP_ELAGV | 91.667 | 168 | 14 | 0 | 1 | 168 | 1 | 168 | 2.49e-111 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0032880 | 0.805191 | 1.503933e-49 | -8.615850e-47 |
| Msa0020410 | Msa0032880 | 0.809213 | 2.114898e-50 | -8.615850e-47 |
| Msa0032860 | Msa0032880 | 0.899397 | 2.063341e-77 | -8.615850e-47 |
| Msa0032880 | Msa0037880 | 0.826055 | 3.345561e-54 | -8.615850e-47 |
| Msa0032880 | Msa0065950 | 0.800049 | 1.728954e-48 | -8.615850e-47 |
| Msa0032880 | Msa0086420 | 0.811520 | 6.720234e-51 | -8.615850e-47 |
| Msa0032880 | Msa0089820 | 0.809299 | 2.027129e-50 | -8.615850e-47 |
| Msa0032880 | Msa0109590 | 0.813319 | 2.717992e-51 | -8.615850e-47 |
| Msa0032880 | Msa0124550 | 0.800083 | 1.702194e-48 | -8.615850e-47 |
| Msa0032880 | Msa0183010 | -0.812370 | 4.387918e-51 | -8.615850e-47 |
| Msa0032880 | Msa0187220 | 0.800877 | 1.172923e-48 | -8.615850e-47 |
| Msa0032880 | Msa0187230 | 0.898567 | 4.674864e-77 | -8.615850e-47 |
| Msa0032880 | Msa0187250 | 0.863753 | 1.987796e-64 | -8.615850e-47 |
| Msa0032880 | Msa0189520 | 0.816123 | 6.502226e-52 | -8.615850e-47 |
| Msa0032880 | Msa0217680 | 0.803236 | 3.838697e-49 | -8.615850e-47 |
| Msa0032880 | Msa0226180 | 0.814050 | 1.876745e-51 | -8.615850e-47 |
| Msa0032880 | Msa0226530 | 0.804957 | 1.683605e-49 | -8.615850e-47 |
| Msa0032880 | Msa0230560 | 0.823594 | 1.273770e-53 | -8.615850e-47 |
| Msa0032880 | Msa0230640 | -0.813586 | 2.374805e-51 | -8.615850e-47 |
| Msa0032880 | Msa0233370 | 0.808664 | 2.771293e-50 | -8.615850e-47 |
| Msa0032880 | Msa0233380 | 0.805397 | 1.361851e-49 | -8.615850e-47 |
| Msa0032880 | Msa0257500 | 0.808278 | 3.349766e-50 | -8.615850e-47 |
| Msa0032880 | Msa0271360 | 0.852593 | 4.170751e-61 | -8.615850e-47 |
| Msa0032880 | Msa0317520 | 0.809591 | 1.754653e-50 | -8.615850e-47 |
| Msa0032880 | Msa0319170 | 0.823702 | 1.201233e-53 | -8.615850e-47 |
| Msa0032880 | Msa0340690 | 0.801177 | 1.018094e-48 | -8.615850e-47 |
| Msa0032880 | Msa0347610 | 0.811915 | 5.514425e-51 | -8.615850e-47 |
| Msa0032880 | Msa0376910 | 0.812948 | 3.279363e-51 | -8.615850e-47 |
| Msa0032880 | Msa0387280 | 0.810359 | 1.199083e-50 | -8.615850e-47 |
| Msa0032880 | Msa0389810 | 0.809827 | 1.560781e-50 | -8.615850e-47 |
| Msa0032880 | Msa0394340 | 0.813778 | 2.154295e-51 | -8.615850e-47 |
| Msa0032880 | Msa0405370 | 0.800468 | 1.420841e-48 | -8.615850e-47 |
| Msa0032880 | Msa0412840 | 0.821076 | 4.892007e-53 | -8.615850e-47 |
| Msa0032880 | Msa0436190 | 0.801439 | 9.000141e-49 | -8.615850e-47 |
| Msa0032880 | Msa0442200 | 0.815434 | 9.262363e-52 | -8.615850e-47 |
| Msa0032880 | Msa0453350 | 0.802723 | 4.899538e-49 | -8.615850e-47 |
| Msa0032880 | Msa0457510 | 0.822335 | 2.502743e-53 | -8.615850e-47 |
| Msa0032880 | Msa0468130 | 0.801840 | 7.447775e-49 | -8.615850e-47 |
| Msa0032880 | Msa0471900 | 0.816141 | 6.445252e-52 | -8.615850e-47 |
| Msa0032880 | Msa0472960 | -0.821664 | 3.581116e-53 | -8.615850e-47 |
| Msa0032880 | Msa0477130 | -0.815352 | 9.659785e-52 | -8.615850e-47 |
| Msa0032880 | Msa0477260 | 0.818540 | 1.858606e-52 | -8.615850e-47 |
| Msa0032880 | Msa0481280 | 0.811511 | 6.750469e-51 | -8.615850e-47 |
| Msa0032880 | Msa0488270 | 0.812676 | 3.760907e-51 | -8.615850e-47 |
| Msa0032880 | Msa0489610 | 0.814003 | 1.922501e-51 | -8.615850e-47 |
| Msa0032880 | Msa0521740 | 0.831038 | 2.093191e-55 | -8.615850e-47 |
| Msa0032880 | Msa0524600 | 0.800904 | 1.157675e-48 | -8.615850e-47 |
| Msa0032880 | Msa0610130 | 0.816287 | 5.976651e-52 | -8.615850e-47 |
| Msa0032880 | Msa0747260 | 0.881402 | 2.473191e-70 | -8.615850e-47 |
| Msa0032880 | Msa0747270 | 0.895830 | 6.600435e-76 | -8.615850e-47 |
| Msa0032880 | Msa0749440 | 0.803865 | 2.842338e-49 | -8.615850e-47 |
| Msa0032880 | Msa0751850 | 0.818025 | 2.431287e-52 | -8.615850e-47 |
| Msa0032880 | Msa0765180 | 0.800343 | 1.506857e-48 | -8.615850e-47 |
| Msa0032880 | Msa0784380 | 0.813407 | 2.600648e-51 | -8.615850e-47 |
| Msa0032880 | Msa0817460 | 0.813909 | 2.016047e-51 | -8.615850e-47 |
| Msa0032880 | Msa0820850 | 0.818568 | 1.831396e-52 | -8.615850e-47 |
| Msa0032880 | Msa0844490 | 0.804094 | 2.548066e-49 | -8.615850e-47 |
| Msa0032880 | Msa0861130 | 0.819332 | 1.227634e-52 | -8.615850e-47 |
| Msa0032880 | Msa0864470 | -0.815149 | 1.072013e-51 | -8.615850e-47 |
| Msa0032880 | Msa0890550 | 0.809560 | 1.781223e-50 | -8.615850e-47 |
| Msa0032880 | Msa0942550 | -0.810579 | 1.074591e-50 | -8.615850e-47 |
| Msa0032880 | Msa0942560 | -0.807307 | 5.389193e-50 | -8.615850e-47 |
| Msa0032880 | Msa0962840 | 0.809954 | 1.466036e-50 | -8.615850e-47 |
| Msa0032880 | Msa0982270 | 0.805373 | 1.377671e-49 | -8.615850e-47 |
| Msa0032880 | Msa0994370 | 0.843198 | 1.623883e-58 | -8.615850e-47 |
| Msa0032880 | Msa1012830 | 0.811157 | 8.057043e-51 | -8.615850e-47 |
| Msa0032880 | Msa1023180 | 0.800834 | 1.196693e-48 | -8.615850e-47 |
| Msa0032880 | Msa1029080 | -0.826984 | 2.009441e-54 | -8.615850e-47 |
| Msa0032880 | Msa1036610 | 0.803374 | 3.593706e-49 | -8.615850e-47 |
| Msa0032880 | Msa1043050 | 0.800884 | 1.168894e-48 | -8.615850e-47 |
| Msa0032880 | Msa1063420 | 0.804657 | 1.944403e-49 | -8.615850e-47 |
| Msa0032880 | Msa1063510 | 0.818241 | 2.172265e-52 | -8.615850e-47 |
| Msa0032880 | Msa1068870 | 0.823758 | 1.165797e-53 | -8.615850e-47 |
| Msa0032880 | Msa1081790 | -0.817808 | 2.721228e-52 | -8.615850e-47 |
| Msa0032880 | Msa1133230 | 0.815333 | 9.755341e-52 | -8.615850e-47 |
| Msa0032880 | Msa1144040 | 0.811965 | 5.377877e-51 | -8.615850e-47 |
| Msa0032880 | Msa1156170 | -0.824289 | 8.752012e-54 | -8.615850e-47 |
| Msa0032880 | Msa1166090 | -0.805062 | 1.599944e-49 | -8.615850e-47 |
| Msa0032880 | Msa1177780 | 0.812605 | 3.896853e-51 | -8.615850e-47 |
| Msa0032880 | Msa1183100 | -0.817395 | 3.371396e-52 | -8.615850e-47 |
| Msa0032880 | Msa1188600 | -0.805528 | 1.278324e-49 | -8.615850e-47 |
| Msa0032880 | Msa1202770 | -0.803982 | 2.688041e-49 | -8.615850e-47 |
| Msa0032880 | Msa1210020 | 0.805737 | 1.155226e-49 | -8.615850e-47 |
| Msa0032880 | Msa1211140 | -0.800012 | 1.759292e-48 | -8.615850e-47 |
| Msa0032880 | Msa1224580 | -0.822153 | 2.758341e-53 | -8.615850e-47 |
| Msa0032880 | Msa1237980 | 0.805512 | 1.288226e-49 | -8.615850e-47 |
| Msa0032880 | Msa1263290 | -0.815384 | 9.502575e-52 | -8.615850e-47 |
| Msa0032880 | Msa1270660 | 0.831393 | 1.712769e-55 | -8.615850e-47 |
| Msa0032880 | Msa1270730 | 0.807753 | 4.334005e-50 | -8.615850e-47 |
| Msa0032880 | Msa1295330 | 0.811883 | 5.603752e-51 | -8.615850e-47 |
| Msa0032880 | Msa1298510 | 0.805788 | 1.127238e-49 | -8.615850e-47 |
| Msa0032880 | Msa1305190 | 0.805380 | 1.372912e-49 | -8.615850e-47 |
| Msa0032880 | Msa1305350 | 0.808759 | 2.644921e-50 | -8.615850e-47 |
| Msa0032880 | Msa1307740 | 0.802954 | 4.390492e-49 | -8.615850e-47 |
| Msa0032880 | Msa1313320 | 0.801745 | 7.790108e-49 | -8.615850e-47 |
| Msa0032880 | Msa1333420 | 0.808638 | 2.806984e-50 | -8.615850e-47 |
| Msa0032880 | Msa1345220 | 0.818406 | 1.993300e-52 | -8.615850e-47 |
| Msa0032880 | Msa1348600 | 0.840654 | 7.634845e-58 | -8.615850e-47 |
| Msa0032880 | Msa1357430 | 0.806925 | 6.492160e-50 | -8.615850e-47 |
| Msa0032880 | Msa1357890 | 0.802135 | 6.478025e-49 | -8.615850e-47 |
| Msa0032880 | Msa1377570 | 0.806584 | 7.663352e-50 | -8.615850e-47 |
| Msa0032880 | Msa1396400 | -0.802689 | 4.980775e-49 | -8.615850e-47 |
| Msa0032880 | Msa1397120 | 0.821455 | 4.000484e-53 | -8.615850e-47 |
| Msa0032880 | Msa1398090 | 0.803399 | 3.550951e-49 | -8.615850e-47 |
| Msa0032880 | Msa1403340 | 0.817766 | 2.781707e-52 | -8.615850e-47 |
| Msa0032880 | Msa1403890 | 0.817118 | 3.892011e-52 | -8.615850e-47 |
| Msa0032880 | Msa1443610 | 0.800131 | 1.663863e-48 | -8.615850e-47 |
| Msa0032880 | Msa1444250 | -0.805743 | 1.151978e-49 | -8.615850e-47 |
| Msa0032880 | Msa1448630 | 0.803804 | 2.927218e-49 | -8.615850e-47 |
| Msa0032880 | Msa1454950 | 0.850465 | 1.668670e-60 | -8.615850e-47 |
| Msa0032880 | Msa1460830 | 0.800324 | 1.520555e-48 | -8.615850e-47 |
| Msa0032880 | Msa1462060 | 0.803114 | 4.068480e-49 | -8.615850e-47 |
| Msa0032880 | Msa1462070 | 0.894877 | 1.630567e-75 | -8.615850e-47 |
| Msa0032880 | Msa1465850 | 0.801096 | 1.057860e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032880 | MtrunA17_Chr1g0192201 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 3.26e-121 | 338 |
| Msa0032880 | MtrunA17_Chr1g0192171 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 2.27e-120 | 336 |
| Msa0032880 | MtrunA17_Chr2g0295871 | 86.310 | 168 | 22 | 1 | 1 | 168 | 1 | 167 | 1.09e-103 | 294 |
| Msa0032880 | MtrunA17_Chr6g0479151 | 81.988 | 161 | 28 | 1 | 1 | 161 | 1 | 160 | 3.18e-91 | 262 |
| Msa0032880 | MtrunA17_Chr1g0192161 | 86.047 | 129 | 18 | 0 | 19 | 147 | 9 | 137 | 1.61e-65 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032880 | AT3G16640.1 | 78.571 | 168 | 36 | 0 | 1 | 168 | 1 | 168 | 8.01e-97 | 277 |
| Msa0032880 | AT3G05540.1 | 79.882 | 169 | 32 | 2 | 1 | 168 | 1 | 168 | 3.29e-90 | 260 |
Find 49 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAGTACTCTGGTAATTT+TGG | 0.116227 | 1_1:+60031697 | Msa0032880:three_prime_UTR |
| TTGACATTGTTGACACTTTC+AGG | 0.139441 | 1_1:+60031234 | Msa0032880:CDS |
| ATTATAAAATTTCAGTAGTA+TGG | 0.248085 | 1_1:+60031820 | Msa0032880:intron |
| GAGTTTACTATTCTCTAATT+AGG | 0.257485 | 1_1:+60031745 | Msa0032880:three_prime_UTR |
| AATTGTAGGTCTTTGAGTTT+TGG | 0.259902 | 1_1:-60031398 | None:intergenic |
| GTTGCTGACATCTAAATTAG+AGG | 0.319278 | 1_1:+60031319 | Msa0032880:CDS |
| TGTTGACACTTTCAGGCTTC+AGG | 0.327729 | 1_1:+60031241 | Msa0032880:CDS |
| ACACATTTAGTTATCATGTT+AGG | 0.332046 | 1_1:+60031648 | Msa0032880:three_prime_UTR |
| AAATTTCAGTAGTATGGTTA+TGG | 0.340189 | 1_1:+60031826 | Msa0032880:intron |
| CGCAACCATGCTTGTTTACC+AGG | 0.349778 | 1_1:+60030159 | Msa0032880:exon |
| GATGAAACACATACAATTGT+AGG | 0.370851 | 1_1:-60031412 | None:intergenic |
| CTACTTTGCCTATGGCTTGA+AGG | 0.378916 | 1_1:+60031611 | Msa0032880:CDS |
| GTTTACCAGGATCTTCTTAC+GGG | 0.390880 | 1_1:+60030172 | Msa0032880:CDS |
| TGTTTACCAGGATCTTCTTA+CGG | 0.395300 | 1_1:+60030171 | Msa0032880:CDS |
| CCATTCTGAATTTCCTTGTA+GGG | 0.421805 | 1_1:-60030963 | None:intergenic |
| TCCATTCTGAATTTCCTTGT+AGG | 0.427172 | 1_1:-60030964 | None:intergenic |
| AATTGCTTCTTATCAAAAGC+TGG | 0.428621 | 1_1:-60031269 | None:intergenic |
| GAATGGAATGTTGTGGGAAG+TGG | 0.443613 | 1_1:+60030980 | Msa0032880:CDS |
| CCTTGTGTTTGCTTACTACA+AGG | 0.455642 | 1_1:+60031563 | Msa0032880:CDS |
| TAGGCAAAGTAGAGAAAAGT+TGG | 0.474181 | 1_1:-60031600 | None:intergenic |
| TATTTGCAGTGGGTTGTTCA+AGG | 0.483236 | 1_1:+60031125 | Msa0032880:intron |
| CTCTGACTCATTCCCCTACA+AGG | 0.486361 | 1_1:+60030950 | Msa0032880:CDS |
| GGAGCAGTGGATGTGAATAT+TGG | 0.501116 | 1_1:+60031146 | Msa0032880:CDS |
| AATAAGAGAGAAGCAAAAGA+AGG | 0.503108 | 1_1:-60030124 | None:intergenic |
| GGTGCTAACCCTTCTGCTGA+GGG | 0.509671 | 1_1:+60031167 | Msa0032880:CDS |
| CTTGATTTCCTTCAAGCCAT+AGG | 0.517168 | 1_1:-60031619 | None:intergenic |
| TTTACTATTCTCTAATTAGG+AGG | 0.521787 | 1_1:+60031748 | Msa0032880:three_prime_UTR |
| ATTCTTAATCGATAGTACTC+TGG | 0.532748 | 1_1:+60031688 | Msa0032880:three_prime_UTR |
| AATTCAGAATGGAATGTTGT+GGG | 0.534489 | 1_1:+60030974 | Msa0032880:CDS |
| TCGTCACCACCCTCAGCAGA+AGG | 0.538139 | 1_1:-60031176 | None:intergenic |
| GTGTTTGCTTACTACAAGGA+TGG | 0.538874 | 1_1:+60031567 | Msa0032880:CDS |
| CCCTACAAGGAAATTCAGAA+TGG | 0.541188 | 1_1:+60030963 | Msa0032880:CDS |
| CATTCTGAATTTCCTTGTAG+GGG | 0.549656 | 1_1:-60030962 | None:intergenic |
| TGGTGCTAACCCTTCTGCTG+AGG | 0.553542 | 1_1:+60031166 | Msa0032880:CDS |
| GTTTACCCGTAAGAAGATCC+TGG | 0.562606 | 1_1:-60030177 | None:intergenic |
| GGGGAGAGCATGCATGATGA+TGG | 0.565967 | 1_1:+60031537 | Msa0032880:CDS |
| AAATTCAGAATGGAATGTTG+TGG | 0.574500 | 1_1:+60030973 | Msa0032880:CDS |
| GTTGTGGGAAGTGGAAGGAA+AGG | 0.585239 | 1_1:+60030989 | Msa0032880:CDS |
| TTCTGCTGAGGGTGGTGACG+AGG | 0.592413 | 1_1:+60031178 | Msa0032880:CDS |
| CTGGTAAACAAGCATGGTTG+CGG | 0.598178 | 1_1:-60030158 | None:intergenic |
| AAGATCCTGGTAAACAAGCA+TGG | 0.602746 | 1_1:-60030164 | None:intergenic |
| GTAGAGAAAAGTTGGATCAG+TGG | 0.605758 | 1_1:-60031592 | None:intergenic |
| GCTAACCCTTCTGCTGAGGG+TGG | 0.615863 | 1_1:+60031170 | Msa0032880:CDS |
| CGTCACCACCCTCAGCAGAA+GGG | 0.628440 | 1_1:-60031175 | None:intergenic |
| CCTTGTAGTAAGCAAACACA+AGG | 0.635355 | 1_1:-60031563 | None:intergenic |
| GTGGGTTGTTCAAGGAGCAG+TGG | 0.636439 | 1_1:+60031133 | Msa0032880:intron |
| GAGGGTGGTGACGAGGATGA+CGG | 0.661706 | 1_1:+60031185 | Msa0032880:CDS |
| GGAATGTTGTGGGAAGTGGA+AGG | 0.687071 | 1_1:+60030984 | Msa0032880:CDS |
| ATATTGTTCTCAGAGCAACA+TGG | 0.711223 | 1_1:+60031793 | Msa0032880:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTAATAGAATTTGT+TGG | + | chr1_1:60030657-60030676 | Msa0032880:intron | 10.0% |
| !! | TTTATTTATGATCATATATT+TGG | - | chr1_1:60031076-60031095 | None:intergenic | 10.0% |
| !!! | TTATATATTAACCTTTTGTA+AGG | + | chr1_1:60030443-60030462 | Msa0032880:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGACACA+AGG | + | chr1_1:60030495-60030514 | Msa0032880:intron | 15.0% |
| !! | AAAACAAAAATTCATTCAAA+TGG | + | chr1_1:60030874-60030893 | Msa0032880:intron | 15.0% |
| !! | ATTATAAAATTTCAGTAGTA+TGG | + | chr1_1:60031820-60031839 | Msa0032880:intron | 15.0% |
| !! | AAAGTAAAAGAAACCTAATT+GGG | - | chr1_1:60030237-60030256 | None:intergenic | 20.0% |
| !! | AAAAGTAAAAGAAACCTAAT+TGG | - | chr1_1:60030238-60030257 | None:intergenic | 20.0% |
| !! | TTATCATTCATCGTAATATT+TGG | - | chr1_1:60030316-60030335 | None:intergenic | 20.0% |
| !!! | TTTTTCATAAACTTCACTTT+TGG | + | chr1_1:60030391-60030410 | Msa0032880:intron | 20.0% |
| !!! | ACAAGGTTAAAATACTTTTT+TGG | + | chr1_1:60030512-60030531 | Msa0032880:intron | 20.0% |
| !! | GATAATAATGAAAAACCTAA+AGG | - | chr1_1:60030631-60030650 | None:intergenic | 20.0% |
| !! | TAATCTTAAATATTAGTAGC+AGG | - | chr1_1:60030824-60030843 | None:intergenic | 20.0% |
| !!! | ATTATCTTTCATCTCTTTTT+TGG | + | chr1_1:60031435-60031454 | Msa0032880:intron | 20.0% |
| !!! | ATTAAGTTTTCTCTTTTTTG+TGG | + | chr1_1:60031462-60031481 | Msa0032880:intron | 20.0% |
| !!! | TTTTCTCCATTGTTTTTCAT+AGG | + | chr1_1:60030254-60030273 | Msa0032880:intron | 25.0% |
| ! | CAAAATCCTATGAAAAACAA+TGG | - | chr1_1:60030263-60030282 | None:intergenic | 25.0% |
| ! | AAATTCATTCACTAAACACA+GGG | - | chr1_1:60030348-60030367 | None:intergenic | 25.0% |
| ! | AATCTTAACAACCTTACAAA+AGG | - | chr1_1:60030457-60030476 | None:intergenic | 25.0% |
| ! | TTGGAAAACCTTAAATTTCT+TGG | + | chr1_1:60030531-60030550 | Msa0032880:intron | 25.0% |
| ! | TGGAAAACCTTAAATTTCTT+GGG | + | chr1_1:60030532-60030551 | Msa0032880:intron | 25.0% |
| ! | ACTATTATAGATCAAACTTG+TGG | + | chr1_1:60030566-60030585 | Msa0032880:intron | 25.0% |
| ! | AAATATTACTTAGCAGTTTG+TGG | - | chr1_1:60030735-60030754 | None:intergenic | 25.0% |
| ! | AAAATCCACAATCAAGTATT+AGG | - | chr1_1:60030784-60030803 | None:intergenic | 25.0% |
| ! | ACACATTTAGTTATCATGTT+AGG | + | chr1_1:60031648-60031667 | Msa0032880:three_prime_UTR | 25.0% |
| ! | GAGTTTACTATTCTCTAATT+AGG | + | chr1_1:60031745-60031764 | Msa0032880:three_prime_UTR | 25.0% |
| ! | TTTACTATTCTCTAATTAGG+AGG | + | chr1_1:60031748-60031767 | Msa0032880:three_prime_UTR | 25.0% |
| ! | AAATTTCAGTAGTATGGTTA+TGG | + | chr1_1:60031826-60031845 | Msa0032880:intron | 25.0% |
| AATAAGAGAGAAGCAAAAGA+AGG | - | chr1_1:60030127-60030146 | None:intergenic | 30.0% | |
| ACAAAAAACTCAAAGATGCA+AGG | - | chr1_1:60030202-60030221 | None:intergenic | 30.0% | |
| ! | TTTTACTTTACCACCCAATT+AGG | + | chr1_1:60030221-60030240 | Msa0032880:intron | 30.0% |
| GAAATTCATTCACTAAACAC+AGG | - | chr1_1:60030349-60030368 | None:intergenic | 30.0% | |
| GATCTATAATAGTGTGTGTT+TGG | - | chr1_1:60030559-60030578 | None:intergenic | 30.0% | |
| !! | AGTTTTATGTTTGTGTTCTG+TGG | + | chr1_1:60030600-60030619 | Msa0032880:intron | 30.0% |
| ! | CTTTGTTGATGAATTTGTCT+AGG | + | chr1_1:60030915-60030934 | Msa0032880:intron | 30.0% |
| AAATTCAGAATGGAATGTTG+TGG | + | chr1_1:60030973-60030992 | Msa0032880:CDS | 30.0% | |
| AATTCAGAATGGAATGTTGT+GGG | + | chr1_1:60030974-60030993 | Msa0032880:CDS | 30.0% | |
| CACATCACACAATAAACTTT+AGG | - | chr1_1:60031103-60031122 | None:intergenic | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | - | chr1_1:60031272-60031291 | None:intergenic | 30.0% | |
| !! | ATTGTAGGTCTTTGAGTTTT+GGG | - | chr1_1:60031400-60031419 | None:intergenic | 30.0% |
| !! | AATTGTAGGTCTTTGAGTTT+TGG | - | chr1_1:60031401-60031420 | None:intergenic | 30.0% |
| GATGAAACACATACAATTGT+AGG | - | chr1_1:60031415-60031434 | None:intergenic | 30.0% | |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | + | chr1_1:60031517-60031536 | Msa0032880:intron | 30.0% |
| ATTCTTAATCGATAGTACTC+TGG | + | chr1_1:60031688-60031707 | Msa0032880:three_prime_UTR | 30.0% | |
| TGTTTACCAGGATCTTCTTA+CGG | + | chr1_1:60030171-60030190 | Msa0032880:CDS | 35.0% | |
| GTAAAAGAAACCTAATTGGG+TGG | - | chr1_1:60030234-60030253 | None:intergenic | 35.0% | |
| GTTTGGTCCCAAGAAATTTA+AGG | - | chr1_1:60030542-60030561 | None:intergenic | 35.0% | |
| TGTTCTGTGGTTTAACCTTT+AGG | + | chr1_1:60030613-60030632 | Msa0032880:intron | 35.0% | |
| GTTAGGCTAATCGTGTTTAA+GGG | - | chr1_1:60030762-60030781 | None:intergenic | 35.0% | |
| CCACAATCAAGTATTAGGTT+AGG | - | chr1_1:60030779-60030798 | None:intergenic | 35.0% | |
| CCTAACCTAATACTTGATTG+TGG | + | chr1_1:60030776-60030795 | Msa0032880:intron | 35.0% | |
| CATTCTGAATTTCCTTGTAG+GGG | - | chr1_1:60030965-60030984 | None:intergenic | 35.0% | |
| CCATTCTGAATTTCCTTGTA+GGG | - | chr1_1:60030966-60030985 | None:intergenic | 35.0% | |
| TCCATTCTGAATTTCCTTGT+AGG | - | chr1_1:60030967-60030986 | None:intergenic | 35.0% | |
| TGTGATGTGATTATTTGCAG+TGG | + | chr1_1:60031114-60031133 | Msa0032880:intron | 35.0% | |
| GTGATGTGATTATTTGCAGT+GGG | + | chr1_1:60031115-60031134 | Msa0032880:intron | 35.0% | |
| TTGACATTGTTGACACTTTC+AGG | + | chr1_1:60031234-60031253 | Msa0032880:CDS | 35.0% | |
| GTTGCTGACATCTAAATTAG+AGG | + | chr1_1:60031319-60031338 | Msa0032880:CDS | 35.0% | |
| !! | CATCAATGTTGCAGTTTTGT+TGG | + | chr1_1:60031516-60031535 | Msa0032880:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | + | chr1_1:60031518-60031537 | Msa0032880:intron | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | - | chr1_1:60031603-60031622 | None:intergenic | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | + | chr1_1:60031603-60031622 | Msa0032880:CDS | 35.0% |
| ! | CGATAGTACTCTGGTAATTT+TGG | + | chr1_1:60031697-60031716 | Msa0032880:three_prime_UTR | 35.0% |
| ATATTGTTCTCAGAGCAACA+TGG | + | chr1_1:60031793-60031812 | Msa0032880:three_prime_UTR | 35.0% | |
| AAGATCCTGGTAAACAAGCA+TGG | - | chr1_1:60030167-60030186 | None:intergenic | 40.0% | |
| GTTTACCAGGATCTTCTTAC+GGG | + | chr1_1:60030172-60030191 | Msa0032880:CDS | 40.0% | |
| AGTTGTTGTGTTTGTGACAG+AGG | + | chr1_1:60030691-60030710 | Msa0032880:intron | 40.0% | |
| GGTTAGGCTAATCGTGTTTA+AGG | - | chr1_1:60030763-60030782 | None:intergenic | 40.0% | |
| CCCTACAAGGAAATTCAGAA+TGG | + | chr1_1:60030963-60030982 | Msa0032880:CDS | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | + | chr1_1:60031125-60031144 | Msa0032880:intron | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | - | chr1_1:60031566-60031585 | None:intergenic | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | + | chr1_1:60031563-60031582 | Msa0032880:CDS | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | + | chr1_1:60031567-60031586 | Msa0032880:CDS | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | - | chr1_1:60031595-60031614 | None:intergenic | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | - | chr1_1:60031622-60031641 | None:intergenic | 40.0% | |
| CTGGTAAACAAGCATGGTTG+CGG | - | chr1_1:60030161-60030180 | None:intergenic | 45.0% | |
| GTTTACCCGTAAGAAGATCC+TGG | - | chr1_1:60030180-60030199 | None:intergenic | 45.0% | |
| GAATGGAATGTTGTGGGAAG+TGG | + | chr1_1:60030980-60030999 | Msa0032880:CDS | 45.0% | |
| GGAGCAGTGGATGTGAATAT+TGG | + | chr1_1:60031146-60031165 | Msa0032880:CDS | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | + | chr1_1:60031241-60031260 | Msa0032880:CDS | 45.0% | |
| !!! | GGTCTTTGAGTTTTGGGAGA+AGG | - | chr1_1:60031394-60031413 | None:intergenic | 45.0% |
| CTACTTTGCCTATGGCTTGA+AGG | + | chr1_1:60031611-60031630 | Msa0032880:CDS | 45.0% | |
| !!! | ATTCTATTAAATTAAAATTT+TGG | - | chr1_1:60030653-60030672 | None:intergenic | 5.0% |
| CGCAACCATGCTTGTTTACC+AGG | + | chr1_1:60030159-60030178 | Msa0032880:exon | 50.0% | |
| CTCTGACTCATTCCCCTACA+AGG | + | chr1_1:60030950-60030969 | Msa0032880:CDS | 50.0% | |
| GGAATGTTGTGGGAAGTGGA+AGG | + | chr1_1:60030984-60031003 | Msa0032880:CDS | 50.0% | |
| GTTGTGGGAAGTGGAAGGAA+AGG | + | chr1_1:60030989-60031008 | Msa0032880:CDS | 50.0% | |
| GGGAAGTGGAAGGAAAGGTT+AGG | + | chr1_1:60030994-60031013 | Msa0032880:intron | 50.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | + | chr1_1:60031133-60031152 | Msa0032880:intron | 55.0% |
| ! | TGGTGCTAACCCTTCTGCTG+AGG | + | chr1_1:60031166-60031185 | Msa0032880:CDS | 55.0% |
| GGTGCTAACCCTTCTGCTGA+GGG | + | chr1_1:60031167-60031186 | Msa0032880:CDS | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | + | chr1_1:60031537-60031556 | Msa0032880:CDS | 55.0% |
| GCTAACCCTTCTGCTGAGGG+TGG | + | chr1_1:60031170-60031189 | Msa0032880:CDS | 60.0% | |
| CGTCACCACCCTCAGCAGAA+GGG | - | chr1_1:60031178-60031197 | None:intergenic | 60.0% | |
| TCGTCACCACCCTCAGCAGA+AGG | - | chr1_1:60031179-60031198 | None:intergenic | 60.0% | |
| ! | TTCTGCTGAGGGTGGTGACG+AGG | + | chr1_1:60031178-60031197 | Msa0032880:CDS | 60.0% |
| ! | GAGGGTGGTGACGAGGATGA+CGG | + | chr1_1:60031185-60031204 | Msa0032880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 60030099 | 60031878 | 60030099 | ID=Msa0032880;Name=Msa0032880 |
| chr1_1 | mRNA | 60030099 | 60031878 | 60030099 | ID=Msa0032880-mRNA-1;Parent=Msa0032880;Name=Msa0032880-mRNA-1;_AED=0.13;_eAED=0.13;_QI=67|1|1|1|0.75|0.6|5|211|168 |
| chr1_1 | exon | 60030099 | 60030193 | 60030099 | ID=Msa0032880-mRNA-1:exon:18705;Parent=Msa0032880-mRNA-1 |
| chr1_1 | exon | 60030937 | 60031010 | 60030937 | ID=Msa0032880-mRNA-1:exon:18706;Parent=Msa0032880-mRNA-1 |
| chr1_1 | exon | 60031134 | 60031420 | 60031134 | ID=Msa0032880-mRNA-1:exon:18707;Parent=Msa0032880-mRNA-1 |
| chr1_1 | exon | 60031530 | 60031814 | 60031530 | ID=Msa0032880-mRNA-1:exon:18708;Parent=Msa0032880-mRNA-1 |
| chr1_1 | exon | 60031835 | 60031878 | 60031835 | ID=Msa0032880-mRNA-1:exon:18709;Parent=Msa0032880-mRNA-1 |
| chr1_1 | five_prime_UTR | 60030099 | 60030165 | 60030099 | ID=Msa0032880-mRNA-1:five_prime_utr;Parent=Msa0032880-mRNA-1 |
| chr1_1 | CDS | 60030166 | 60030193 | 60030166 | ID=Msa0032880-mRNA-1:cds;Parent=Msa0032880-mRNA-1 |
| chr1_1 | CDS | 60030937 | 60031010 | 60030937 | ID=Msa0032880-mRNA-1:cds;Parent=Msa0032880-mRNA-1 |
| chr1_1 | CDS | 60031134 | 60031420 | 60031134 | ID=Msa0032880-mRNA-1:cds;Parent=Msa0032880-mRNA-1 |
| chr1_1 | CDS | 60031530 | 60031647 | 60031530 | ID=Msa0032880-mRNA-1:cds;Parent=Msa0032880-mRNA-1 |
| chr1_1 | three_prime_UTR | 60031648 | 60031814 | 60031648 | ID=Msa0032880-mRNA-1:three_prime_utr;Parent=Msa0032880-mRNA-1 |
| chr1_1 | three_prime_UTR | 60031835 | 60031878 | 60031835 | ID=Msa0032880-mRNA-1:three_prime_utr;Parent=Msa0032880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
