Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682920 | XP_003606412.1 | 47.303 | 241 | 89 | 8 | 50 | 255 | 53 | 290 | 8.50e-52 | 188 |
| Msa0682920 | XP_003606412.1 | 96.739 | 276 | 9 | 0 | 234 | 509 | 16 | 291 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682920 | sp|Q8LEE9|FLA12_ARATH | 54.000 | 150 | 67 | 2 | 291 | 439 | 39 | 187 | 8.65e-44 | 158 |
| Msa0682920 | sp|Q8LEE9|FLA12_ARATH | 44.295 | 149 | 63 | 3 | 67 | 195 | 39 | 187 | 1.75e-31 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682920 | G7JPF4 | 47.303 | 241 | 89 | 8 | 50 | 255 | 53 | 290 | 4.06e-52 | 188 |
| Msa0682920 | G7JPF4 | 96.739 | 276 | 9 | 0 | 234 | 509 | 16 | 291 | 0.0 | 529 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618050 | Msa0682920 | 0.820214 | 7.718447e-53 | -8.615850e-47 |
| Msa0618600 | Msa0682920 | 0.856735 | 2.632212e-62 | -8.615850e-47 |
| Msa0643240 | Msa0682920 | 0.885657 | 6.732679e-72 | -8.615850e-47 |
| Msa0657380 | Msa0682920 | 0.930614 | 1.266918e-93 | -8.615850e-47 |
| Msa0682920 | Msa0708510 | 0.925457 | 1.789240e-90 | -8.615850e-47 |
| Msa0682920 | Msa0792190 | 0.867902 | 9.714330e-66 | -8.615850e-47 |
| Msa0682920 | Msa1035290 | 0.803635 | 3.172444e-49 | -8.615850e-47 |
| Msa0682920 | Msa1075380 | 0.856407 | 3.286206e-62 | -8.615850e-47 |
| Msa0682920 | Msa1116460 | 0.855277 | 7.029585e-62 | -8.615850e-47 |
| Msa0682920 | Msa1199250 | 0.922236 | 1.278123e-88 | -8.615850e-47 |
| Msa0682920 | Msa1199260 | 0.865993 | 3.944929e-65 | -8.615850e-47 |
| Msa0682920 | Msa1252480 | 0.918684 | 1.149128e-86 | -8.615850e-47 |
| Msa0682920 | Msa1267350 | 0.864125 | 1.522344e-64 | -8.615850e-47 |
| Msa0682920 | Msa1293220 | 0.887407 | 1.466652e-72 | -8.615850e-47 |
| Msa0682920 | Msa1421310 | 0.827848 | 1.247264e-54 | -8.615850e-47 |
| Msa0142380 | Msa0682920 | 0.858149 | 1.004154e-62 | -8.615850e-47 |
| Msa0194000 | Msa0682920 | 0.870998 | 9.552195e-67 | -8.615850e-47 |
| Msa0235870 | Msa0682920 | 0.866256 | 3.257230e-65 | -8.615850e-47 |
| Msa0250450 | Msa0682920 | 0.804485 | 2.112123e-49 | -8.615850e-47 |
| Msa0263440 | Msa0682920 | 0.874892 | 4.732963e-68 | -8.615850e-47 |
| Msa0269380 | Msa0682920 | 0.867072 | 1.791355e-65 | -8.615850e-47 |
| Msa0288900 | Msa0682920 | 0.871289 | 7.657586e-67 | -8.615850e-47 |
| Msa0289060 | Msa0682920 | 0.817236 | 3.661340e-52 | -8.615850e-47 |
| Msa0289100 | Msa0682920 | 0.816490 | 5.383989e-52 | -8.615850e-47 |
| Msa0301030 | Msa0682920 | 0.872268 | 3.622443e-67 | -8.615850e-47 |
| Msa0314220 | Msa0682920 | 0.894877 | 1.631123e-75 | -8.615850e-47 |
| Msa0314330 | Msa0682920 | 0.850558 | 1.571371e-60 | -8.615850e-47 |
| Msa0327020 | Msa0682920 | 0.828771 | 7.469044e-55 | -8.615850e-47 |
| Msa0338580 | Msa0682920 | 0.808866 | 2.509004e-50 | -8.615850e-47 |
| Msa0485970 | Msa0682920 | 0.840468 | 8.539141e-58 | -8.615850e-47 |
| Msa0547390 | Msa0682920 | 0.869141 | 3.865743e-66 | -8.615850e-47 |
| Msa0564950 | Msa0682920 | 0.801734 | 7.829984e-49 | -8.615850e-47 |
| Msa0565260 | Msa0682920 | 0.880033 | 7.655229e-70 | -8.615850e-47 |
| Msa0580580 | Msa0682920 | 0.820589 | 6.331589e-53 | -8.615850e-47 |
| Msa0602110 | Msa0682920 | 0.818368 | 2.033384e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682920 | MtrunA17_Chr4g0029441 | 96.739 | 276 | 9 | 0 | 234 | 509 | 16 | 291 | 0.0 | 529 |
| Msa0682920 | MtrunA17_Chr4g0029441 | 47.303 | 241 | 89 | 8 | 50 | 255 | 53 | 290 | 7.82e-56 | 188 |
| Msa0682920 | MtrunA17_Chr4g0029501 | 92.727 | 275 | 20 | 0 | 234 | 508 | 16 | 290 | 3.90e-168 | 476 |
| Msa0682920 | MtrunA17_Chr4g0029501 | 48.315 | 267 | 97 | 10 | 14 | 244 | 18 | 279 | 2.88e-57 | 192 |
| Msa0682920 | MtrunA17_Chr4g0029431 | 90.119 | 253 | 5 | 2 | 1 | 233 | 1 | 253 | 1.15e-151 | 434 |
| Msa0682920 | MtrunA17_Chr4g0029431 | 55.330 | 197 | 79 | 3 | 248 | 440 | 25 | 216 | 2.01e-63 | 208 |
| Msa0682920 | MtrunA17_Chr4g0026611 | 79.422 | 277 | 54 | 2 | 234 | 507 | 18 | 294 | 7.12e-136 | 394 |
| Msa0682920 | MtrunA17_Chr4g0026611 | 50.450 | 222 | 77 | 6 | 14 | 204 | 20 | 239 | 2.17e-53 | 182 |
| Msa0682920 | MtrunA17_Chr2g0326411 | 70.874 | 206 | 54 | 3 | 234 | 438 | 16 | 216 | 7.04e-91 | 279 |
| Msa0682920 | MtrunA17_Chr2g0326411 | 47.317 | 205 | 84 | 4 | 13 | 194 | 13 | 216 | 4.25e-47 | 165 |
| Msa0682920 | MtrunA17_Chr2g0326421 | 57.034 | 263 | 78 | 9 | 1 | 235 | 1 | 256 | 7.03e-73 | 233 |
| Msa0682920 | MtrunA17_Chr2g0326421 | 47.431 | 253 | 117 | 5 | 260 | 507 | 41 | 282 | 1.20e-66 | 216 |
| Msa0682920 | MtrunA17_Chr8g0379611 | 56.667 | 210 | 78 | 3 | 240 | 438 | 17 | 224 | 2.85e-71 | 229 |
| Msa0682920 | MtrunA17_Chr8g0379611 | 48.988 | 247 | 84 | 7 | 16 | 228 | 16 | 254 | 1.38e-56 | 191 |
| Msa0682920 | MtrunA17_Chr2g0284411 | 58.500 | 200 | 74 | 2 | 291 | 490 | 68 | 258 | 1.83e-70 | 226 |
| Msa0682920 | MtrunA17_Chr2g0284411 | 49.213 | 254 | 97 | 6 | 1 | 230 | 1 | 246 | 7.94e-56 | 188 |
| Msa0682920 | MtrunA17_Chr2g0284431 | 58.500 | 200 | 74 | 2 | 291 | 490 | 89 | 279 | 9.52e-70 | 225 |
| Msa0682920 | MtrunA17_Chr2g0284431 | 51.575 | 254 | 91 | 7 | 1 | 230 | 22 | 267 | 1.06e-56 | 191 |
| Msa0682920 | MtrunA17_Chr2g0284451 | 45.862 | 290 | 116 | 11 | 234 | 501 | 18 | 288 | 2.04e-64 | 211 |
| Msa0682920 | MtrunA17_Chr2g0284451 | 41.111 | 270 | 109 | 8 | 1 | 230 | 2 | 261 | 1.12e-46 | 164 |
| Msa0682920 | MtrunA17_Chr8g0379621 | 56.281 | 199 | 67 | 7 | 249 | 438 | 55 | 242 | 6.44e-62 | 205 |
| Msa0682920 | MtrunA17_Chr8g0379621 | 48.402 | 219 | 82 | 6 | 38 | 225 | 55 | 273 | 1.83e-48 | 169 |
| Msa0682920 | MtrunA17_Chr8g0379631 | 51.754 | 228 | 85 | 7 | 234 | 438 | 17 | 242 | 1.94e-61 | 204 |
| Msa0682920 | MtrunA17_Chr8g0379631 | 48.430 | 223 | 82 | 7 | 36 | 225 | 51 | 273 | 1.56e-48 | 170 |
| Msa0682920 | MtrunA17_Chr4g0029331 | 50.000 | 204 | 71 | 4 | 236 | 439 | 37 | 209 | 1.06e-53 | 182 |
| Msa0682920 | MtrunA17_Chr4g0029331 | 45.872 | 218 | 69 | 6 | 1 | 198 | 24 | 212 | 5.93e-47 | 164 |
| Msa0682920 | MtrunA17_Chr2g0326431 | 54.362 | 149 | 67 | 1 | 291 | 439 | 41 | 188 | 8.28e-48 | 166 |
| Msa0682920 | MtrunA17_Chr2g0326431 | 44.221 | 199 | 84 | 4 | 67 | 239 | 41 | 238 | 2.48e-39 | 143 |
| Msa0682920 | MtrunA17_Chr7g0263981 | 44.304 | 158 | 86 | 2 | 283 | 439 | 32 | 188 | 4.85e-36 | 134 |
| Msa0682920 | MtrunA17_Chr7g0263981 | 42.581 | 155 | 67 | 3 | 63 | 196 | 36 | 189 | 4.74e-29 | 115 |
| Msa0682920 | MtrunA17_Chr2g0325021 | 43.949 | 157 | 87 | 1 | 284 | 440 | 31 | 186 | 5.08e-28 | 112 |
| Msa0682920 | MtrunA17_Chr2g0325021 | 35.000 | 160 | 85 | 2 | 56 | 196 | 27 | 186 | 4.76e-23 | 98.2 |
| Msa0682920 | MtrunA17_Chr7g0246041 | 32.778 | 180 | 116 | 2 | 284 | 463 | 177 | 351 | 3.30e-18 | 87.0 |
| Msa0682920 | MtrunA17_Chr7g0246041 | 32.704 | 159 | 89 | 4 | 67 | 209 | 184 | 340 | 2.21e-12 | 68.9 |
| Msa0682920 | MtrunA17_Chr5g0448001 | 30.667 | 225 | 135 | 7 | 290 | 503 | 47 | 261 | 5.71e-16 | 78.2 |
| Msa0682920 | MtrunA17_Chr5g0448001 | 31.579 | 171 | 92 | 5 | 67 | 213 | 48 | 217 | 2.39e-12 | 67.4 |
| Msa0682920 | MtrunA17_Chr2g0296571 | 28.194 | 227 | 140 | 7 | 290 | 503 | 194 | 410 | 1.13e-11 | 66.6 |
| Msa0682920 | MtrunA17_Chr5g0448211 | 28.934 | 197 | 125 | 7 | 258 | 453 | 167 | 349 | 1.13e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682920 | AT5G60490.1 | 54.000 | 150 | 67 | 2 | 291 | 439 | 39 | 187 | 8.79e-45 | 158 |
| Msa0682920 | AT5G60490.1 | 44.295 | 149 | 63 | 3 | 67 | 195 | 39 | 187 | 1.78e-32 | 125 |
| Msa0682920 | AT5G03170.1 | 47.904 | 167 | 86 | 1 | 284 | 449 | 29 | 195 | 1.07e-44 | 157 |
| Msa0682920 | AT5G03170.1 | 39.665 | 179 | 86 | 3 | 53 | 209 | 22 | 200 | 3.01e-34 | 129 |
| Msa0682920 | AT5G44130.1 | 36.316 | 190 | 115 | 3 | 290 | 474 | 35 | 223 | 4.83e-27 | 109 |
| Msa0682920 | AT5G44130.1 | 33.333 | 180 | 92 | 5 | 67 | 222 | 36 | 211 | 1.09e-19 | 89.0 |
| Msa0682920 | AT2G20520.1 | 36.667 | 210 | 127 | 4 | 270 | 476 | 19 | 225 | 1.46e-26 | 108 |
| Msa0682920 | AT2G20520.1 | 34.375 | 192 | 97 | 4 | 60 | 223 | 31 | 221 | 6.62e-22 | 95.5 |
| Msa0682920 | AT1G03870.1 | 33.333 | 213 | 131 | 5 | 290 | 501 | 38 | 240 | 4.07e-24 | 101 |
| Msa0682920 | AT1G03870.1 | 28.788 | 198 | 115 | 5 | 67 | 239 | 39 | 235 | 1.40e-17 | 82.8 |
| Msa0682920 | AT3G60900.1 | 29.444 | 180 | 122 | 2 | 284 | 463 | 183 | 357 | 6.82e-15 | 77.0 |
| Msa0682920 | AT2G04780.1 | 30.263 | 152 | 100 | 3 | 290 | 439 | 45 | 192 | 4.96e-12 | 66.6 |
| Msa0682920 | AT2G04780.2 | 30.263 | 152 | 100 | 3 | 290 | 439 | 45 | 192 | 4.96e-12 | 66.6 |
Find 112 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGATGGTGCTGTTGCTTT+TGG | 0.250966 | 4_4:-44964385 | None:intergenic |
| AACATTCAGTTCCACCTTTC+CGG | 0.262448 | 4_4:-44967585 | None:intergenic |
| TACCTTGATCCTGATCATTT+TGG | 0.263017 | 4_4:-44965008 | None:intergenic |
| GGCTCCTAAAGCTGCTAATA+AGG | 0.272377 | 4_4:+44964960 | Msa0682920:CDS |
| ATCTGATGATGTATCTTTAT+CGG | 0.286537 | 4_4:-44967813 | None:intergenic |
| CAAGCTCGCGATTTATCATT+TGG | 0.291478 | 4_4:+44964861 | Msa0682920:CDS |
| TCTGTTGAGTCTGGTGATTC+AGG | 0.294510 | 4_4:-44964430 | None:intergenic |
| CCGGATGACAGCGCCTTTGC+AGG | 0.296032 | 4_4:+44967422 | Msa0682920:CDS |
| GCTGTATCGGTTGAAGGTTC+TGG | 0.299723 | 4_4:-44967776 | None:intergenic |
| ACCGGGGAAGGCACCATCTT+TGG | 0.311761 | 4_4:+44967751 | Msa0682920:CDS |
| CGCTACTAAGGCACCTGCTT+TGG | 0.312281 | 4_4:+44964912 | Msa0682920:CDS |
| CCAACTCAATTCACAACTAT+TGG | 0.341146 | 4_4:+44967367 | Msa0682920:CDS |
| TTCTCCTTATTAGCAGCTTT+AGG | 0.349370 | 4_4:-44964964 | None:intergenic |
| TCAACAGTGCCTGCGGTGTC+AGG | 0.354935 | 4_4:-44967269 | None:intergenic |
| TTACCAGCTATTGTTTGAAC+AGG | 0.356173 | 4_4:-44964733 | None:intergenic |
| CGTCTTGCTATTTACAAAGT+TGG | 0.358413 | 4_4:+44967686 | Msa0682920:CDS |
| ACATTCAGTTCCACCTTTCC+GGG | 0.360231 | 4_4:-44967584 | None:intergenic |
| CATCACAACAATCCTCAAAA+AGG | 0.364595 | 4_4:+44964468 | Msa0682920:CDS |
| AATGAAGGTACCAATGGTTT+AGG | 0.368336 | 4_4:-44967221 | None:intergenic |
| CCTGCAAAGGCGCTGTCATC+CGG | 0.387064 | 4_4:-44967422 | None:intergenic |
| AACCCTGTGAGAACACTTGC+TGG | 0.387148 | 4_4:+44967554 | Msa0682920:CDS |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4_4:+44967706 | Msa0682920:CDS |
| GCCTTTGCTGTATCGGTTGA+AGG | 0.393378 | 4_4:-44967782 | None:intergenic |
| AGGATTGTTGTGATGTCGTC+AGG | 0.395586 | 4_4:-44964460 | None:intergenic |
| TGGACTTGTATTAGCTTTGA+CGG | 0.406700 | 4_4:+44967910 | Msa0682920:CDS |
| AACAATGTCAGTCTTTCAAC+CGG | 0.416183 | 4_4:+44964796 | Msa0682920:CDS |
| GTTGTTACTGCTTCCGTTGT+GGG | 0.419419 | 4_4:+44964820 | Msa0682920:CDS |
| CTTGAAAATGCTGAATCGTC+TGG | 0.426953 | 4_4:-44964598 | None:intergenic |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.431548 | 4_4:-44967194 | None:intergenic |
| GGCTCTATCAAGATTGTGTA+TGG | 0.434280 | 4_4:+44967872 | Msa0682920:CDS |
| GCTGGTAGTGTAGGTTGTAT+AGG | 0.438970 | 4_4:-44967176 | None:intergenic |
| TGTATGCCTTCGCCTTTCTC+AGG | 0.442653 | 4_4:-44967304 | None:intergenic |
| AACTCGTGCTGCTGCTGCTA+AGG | 0.446593 | 4_4:+44964939 | Msa0682920:CDS |
| GGGACGGAGTCTGTTGAGTC+TGG | 0.453003 | 4_4:-44964439 | None:intergenic |
| TTTAGGCGCCTTTGCTGTAT+CGG | 0.457045 | 4_4:-44967789 | None:intergenic |
| AATGTGGGGACTAATGATTT+TGG | 0.458446 | 4_4:-44964406 | None:intergenic |
| TTAGCAGCAGCAGCACGAGT+TGG | 0.460626 | 4_4:-44964937 | None:intergenic |
| AATCCAACTGAAAACAAGTC+TGG | 0.463708 | 4_4:+44967851 | Msa0682920:CDS |
| GCACGAGTTGGAGCCAAAGC+AGG | 0.464102 | 4_4:-44964925 | None:intergenic |
| GTCCATCGGAAAGAGAGTTA+AGG | 0.464359 | 4_4:-44967460 | None:intergenic |
| CGTTTCTAAGGCACCGGGGA+AGG | 0.474089 | 4_4:+44967739 | Msa0682920:CDS |
| TTTGAGCTCGCTACATATTG+AGG | 0.476279 | 4_4:-44964691 | None:intergenic |
| GGAGCTGCAGCTGGTGTGGT+TGG | 0.478200 | 4_4:-44967200 | None:intergenic |
| GATGTATCTTTATCGGCTTT+AGG | 0.486485 | 4_4:-44967806 | None:intergenic |
| TCGTGATTTCTTCGCTACTA+AGG | 0.488348 | 4_4:+44964900 | Msa0682920:CDS |
| TGATCAAGACCAAAATGATC+AGG | 0.490187 | 4_4:+44964999 | Msa0682920:CDS |
| GTGGTTGGAGCTGGTAGTGT+AGG | 0.493589 | 4_4:-44967185 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.494928 | 4_4:-44967752 | None:intergenic |
| AACCCTGTTCAAACAATAGC+TGG | 0.497527 | 4_4:+44964730 | Msa0682920:CDS |
| TTCCTTAACTCTCTTTCCGA+TGG | 0.505029 | 4_4:+44967458 | Msa0682920:CDS |
| GCCTTTGCAGGACTCAAAGC+AGG | 0.505794 | 4_4:+44967434 | Msa0682920:CDS |
| CAACAGTGCCTGCGGTGTCA+GGG | 0.508035 | 4_4:-44967268 | None:intergenic |
| CCAATAGTTGTGAATTGAGT+TGG | 0.509984 | 4_4:-44967367 | None:intergenic |
| ATGATTCAGGTGCTTGTGAA+AGG | 0.511644 | 4_4:-44964330 | None:intergenic |
| GCTCCAGCAAGTGTTCTCAC+AGG | 0.519482 | 4_4:-44967557 | None:intergenic |
| GGAAGTGTGAACATATCGAC+AGG | 0.523735 | 4_4:+44967620 | Msa0682920:CDS |
| GACCAAAATGATCAGGATCA+AGG | 0.527131 | 4_4:+44965006 | Msa0682920:CDS |
| CTAGGTGACTCTGGTAATGA+AGG | 0.531327 | 4_4:-44967236 | None:intergenic |
| AGTGCCTGCGGTGTCAGGGG+TGG | 0.531927 | 4_4:-44967264 | None:intergenic |
| GCAGGCACTGTTGACATTGT+CGG | 0.533562 | 4_4:+44967278 | Msa0682920:CDS |
| GAAGTGAACACAACAATCAA+TGG | 0.536466 | 4_4:+44967644 | Msa0682920:CDS |
| GAAGGTTCTGGTGCCAAAGA+TGG | 0.536850 | 4_4:-44967764 | None:intergenic |
| TGGATTAACGATTCTTGCAC+CGG | 0.540187 | 4_4:+44967403 | Msa0682920:CDS |
| GGTTGTTACTGCTTCCGTTG+TGG | 0.541810 | 4_4:+44964819 | Msa0682920:CDS |
| CTTCCCCGGTGCCTTAGAAA+CGG | 0.542193 | 4_4:-44967738 | None:intergenic |
| AGCTGCAGCTCCTAAACCAT+TGG | 0.544279 | 4_4:+44967211 | Msa0682920:CDS |
| AGTTAAGAAACCCTGCTTTG+AGG | 0.544708 | 4_4:-44964621 | None:intergenic |
| GTGGAATCACTAGGTGACTC+TGG | 0.548332 | 4_4:-44967245 | None:intergenic |
| GAAACGGAAAAGAAATCCAT+AGG | 0.554500 | 4_4:-44967722 | None:intergenic |
| AGCAAGTGTTCTCACAGGGT+TGG | 0.556533 | 4_4:-44967552 | None:intergenic |
| GAACTGAATGTTGTGAGTTA+CGG | 0.564207 | 4_4:+44967596 | Msa0682920:CDS |
| CATTGTCGGAATCCTGAGAA+AGG | 0.566305 | 4_4:+44967292 | Msa0682920:CDS |
| TGTTGTGATGTCGTCAGGGA+CGG | 0.571744 | 4_4:-44964455 | None:intergenic |
| CTCCAGCAAGTGTTCTCACA+GGG | 0.574947 | 4_4:-44967556 | None:intergenic |
| GTCTGGTGATTCAGGTAATG+TGG | 0.576222 | 4_4:-44964422 | None:intergenic |
| CTACATATTGAGGTAAGATG+TGG | 0.578300 | 4_4:-44964681 | None:intergenic |
| GATTCCACCCCTGACACCGC+AGG | 0.578533 | 4_4:+44967260 | Msa0682920:CDS |
| TGCTGGAGCTAAACCCGGAA+AGG | 0.580904 | 4_4:+44967571 | Msa0682920:CDS |
| TGATTCAGGTGCTTGTGAAA+GGG | 0.580955 | 4_4:-44964329 | None:intergenic |
| TACATCATCAGATTCGTCGC+AGG | 0.582113 | 4_4:+44967823 | Msa0682920:CDS |
| GTGTCAGGGGTGGAATCACT+AGG | 0.582776 | 4_4:-44967254 | None:intergenic |
| GGTTGTATAGGAGCAGTAGC+TGG | 0.582821 | 4_4:-44967164 | None:intergenic |
| TCAAGATTGTGTATGGAAAG+TGG | 0.583724 | 4_4:+44967879 | Msa0682920:CDS |
| TCTGGTGATTCAGGTAATGT+GGG | 0.585032 | 4_4:-44964421 | None:intergenic |
| TCTGGTAATGAAGGTACCAA+TGG | 0.585762 | 4_4:-44967227 | None:intergenic |
| TATGGAAAGTGGATGTCACT+TGG | 0.586667 | 4_4:+44967890 | Msa0682920:CDS |
| AACAGTGCCTGCGGTGTCAG+GGG | 0.587591 | 4_4:-44967267 | None:intergenic |
| TCCTGCTTTGAGTCCTGCAA+AGG | 0.587782 | 4_4:-44967435 | None:intergenic |
| ACACTTGCTGGAGCTAAACC+CGG | 0.593390 | 4_4:+44967566 | Msa0682920:CDS |
| AATGGTTTAGGAGCTGCAGC+TGG | 0.597225 | 4_4:-44967209 | None:intergenic |
| TTTAGGAGCTGCAGCTGGTG+TGG | 0.597546 | 4_4:-44967204 | None:intergenic |
| CGGAATCCTGAGAAAGGCGA+AGG | 0.598403 | 4_4:+44967298 | Msa0682920:CDS |
| ACAATGTCAGTCTTTCAACC+GGG | 0.598947 | 4_4:+44964797 | Msa0682920:CDS |
| TACCAGCTATTGTTTGAACA+GGG | 0.607680 | 4_4:-44964732 | None:intergenic |
| ACCTTCAACCGATACAGCAA+AGG | 0.611839 | 4_4:+44967781 | Msa0682920:CDS |
| TGCTTGTGAAAGGGATAATG+TGG | 0.613574 | 4_4:-44964320 | None:intergenic |
| ATGCTGAATCGTCTGGCGCG+AGG | 0.616806 | 4_4:-44964591 | None:intergenic |
| GACAATGTCAACAGTGCCTG+CGG | 0.617535 | 4_4:-44967276 | None:intergenic |
| TGGAGCTAAACCCGGAAAGG+TGG | 0.639885 | 4_4:+44967574 | Msa0682920:CDS |
| CTGAATGTTGTGAGTTACGG+AGG | 0.642257 | 4_4:+44967599 | Msa0682920:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4_4:-44967505 | None:intergenic |
| CAATGTCAGTCTTTCAACCG+GGG | 0.675430 | 4_4:+44964798 | Msa0682920:CDS |
| AGTGTACACAACACCCACAA+CGG | 0.678067 | 4_4:-44964833 | None:intergenic |
| CTGGTGATTCAGGTAATGTG+GGG | 0.679078 | 4_4:-44964420 | None:intergenic |
| GGATTGTTGTGATGTCGTCA+GGG | 0.683685 | 4_4:-44964459 | None:intergenic |
| TAGTTGAGATAAACTAGTGG+TGG | 0.696029 | 4_4:-44967138 | None:intergenic |
| AACGGAAGCAGTAACAACCC+CGG | 0.701266 | 4_4:-44964815 | None:intergenic |
| GAAGTGTGAACATATCGACA+GGG | 0.704878 | 4_4:+44967621 | Msa0682920:CDS |
| AAGTGTGAACATATCGACAG+GGG | 0.734548 | 4_4:+44967622 | Msa0682920:CDS |
| TTAGTAGCGAAGAAATCACG+AGG | 0.758452 | 4_4:-44964898 | None:intergenic |
| TGATAGTTGAGATAAACTAG+TGG | 0.789490 | 4_4:-44967141 | None:intergenic |
| TTTCCGTTTCTAAGGCACCG+GGG | 0.799303 | 4_4:+44967735 | Msa0682920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAAAATCTATAATTTT+TGG | + | chr4_4:44965845-44965864 | Msa0682920:intron | 10.0% |
| !!! | TGAAAAAATCTATAATTTTT+GGG | + | chr4_4:44965846-44965865 | Msa0682920:intron | 10.0% |
| !!! | AATTTTATGTACAAAAAAAT+AGG | + | chr4_4:44966542-44966561 | Msa0682920:intron | 10.0% |
| !!! | TTTTCATTTGAATTTTTCTA+TGG | + | chr4_4:44965182-44965201 | Msa0682920:intron | 15.0% |
| !! | TTGTATAAAAAAGTTTGATT+TGG | + | chr4_4:44965245-44965264 | Msa0682920:intron | 15.0% |
| !!! | GATGATATTTCAAATTTTAT+TGG | + | chr4_4:44965267-44965286 | Msa0682920:intron | 15.0% |
| !! | TTGAATTAACTTATCATAAA+AGG | + | chr4_4:44965532-44965551 | Msa0682920:intron | 15.0% |
| !!! | TGGTAATTGAAAATTTTAAA+GGG | + | chr4_4:44965951-44965970 | Msa0682920:intron | 15.0% |
| !!! | AAGAAGATTAAATATGTTTT+TGG | - | chr4_4:44966038-44966057 | None:intergenic | 15.0% |
| !! | TAGAATAATCTAAGAATATT+TGG | + | chr4_4:44966193-44966212 | Msa0682920:intron | 15.0% |
| !! | AAACATTAATTTATCAAAAC+TGG | - | chr4_4:44966334-44966353 | None:intergenic | 15.0% |
| !!! | TGATTTGTTAACTTAAATTT+TGG | - | chr4_4:44966884-44966903 | None:intergenic | 15.0% |
| !!! | TTTTCTTTAAAGAAAGTTTT+AGG | - | chr4_4:44967047-44967066 | None:intergenic | 15.0% |
| !! | TATACAATAAAAATGACACA+AGG | - | chr4_4:44965232-44965251 | None:intergenic | 20.0% |
| !! | CATGAATTGATTGAAAAATA+AGG | + | chr4_4:44965919-44965938 | Msa0682920:intron | 20.0% |
| !!! | AATTTTCAATTACCACTTTT+TGG | - | chr4_4:44965946-44965965 | None:intergenic | 20.0% |
| !!! | GTGGTAATTGAAAATTTTAA+AGG | + | chr4_4:44965950-44965969 | Msa0682920:intron | 20.0% |
| !!! | TGAAAAGTTGGTATATTTAT+AGG | + | chr4_4:44966010-44966029 | Msa0682920:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | + | chr4_4:44966011-44966030 | Msa0682920:intron | 20.0% |
| !! | AAAAAAAAAAGAGCAGATTA+TGG | + | chr4_4:44966297-44966316 | Msa0682920:intron | 20.0% |
| !!! | TGTGTTTCTTTTTTTCTTTT+TGG | - | chr4_4:44966700-44966719 | None:intergenic | 20.0% |
| !! | ATGATATCATTTATCTGAAA+AGG | - | chr4_4:44966820-44966839 | None:intergenic | 20.0% |
| !! | AAGTTAACAAATCACAATTA+AGG | + | chr4_4:44966890-44966909 | Msa0682920:intron | 20.0% |
| !! | AGTTAACAAATCACAATTAA+GGG | + | chr4_4:44966891-44966910 | Msa0682920:intron | 20.0% |
| !!! | TGTTTTTTTTGGAGATTTTG+GGG | - | chr4_4:44964356-44964375 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTTGGAGATTTT+GGG | - | chr4_4:44964357-44964376 | None:intergenic | 25.0% |
| !!! | TCATGATTTCTGTTGTTTTT+AGG | - | chr4_4:44964522-44964541 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGTTTTCGTCTA+AGG | - | chr4_4:44964647-44964666 | None:intergenic | 25.0% |
| ! | ATTAAAATGCAACTTCCAAA+TGG | - | chr4_4:44965124-44965143 | None:intergenic | 25.0% |
| ! | AATGAAAAGCAACAAAAAAG+TGG | - | chr4_4:44965170-44965189 | None:intergenic | 25.0% |
| !! | AGTTAGCTTATAACTTATAG+TGG | + | chr4_4:44965337-44965356 | Msa0682920:intron | 25.0% |
| ! | TTGATTGAATTTGTAGTGTT+TGG | + | chr4_4:44965369-44965388 | Msa0682920:intron | 25.0% |
| ! | GTAGTGTTTGGTAAAATTAA+CGG | + | chr4_4:44965381-44965400 | Msa0682920:intron | 25.0% |
| ! | ATTACTTTATCATGAGCTTA+TGG | - | chr4_4:44965579-44965598 | None:intergenic | 25.0% |
| ! | ATAAGCTCATGATAAAGTAA+TGG | + | chr4_4:44965578-44965597 | Msa0682920:intron | 25.0% |
| ! | CTTCTTCAATAATAATGCTA+AGG | - | chr4_4:44965754-44965773 | None:intergenic | 25.0% |
| ! | AGCATTATTATTGAAGAAGA+TGG | + | chr4_4:44965755-44965774 | Msa0682920:intron | 25.0% |
| !! | AAATCGAAGGAAAATTTTAG+AGG | + | chr4_4:44965979-44965998 | Msa0682920:intron | 25.0% |
| !! | AATCGAAGGAAAATTTTAGA+GGG | + | chr4_4:44965980-44965999 | Msa0682920:intron | 25.0% |
| ! | ATATTTGGATGATATGACAA+AGG | + | chr4_4:44966208-44966227 | Msa0682920:intron | 25.0% |
| !! | CTCAAAATCTTTGTTTAAGT+TGG | - | chr4_4:44966241-44966260 | None:intergenic | 25.0% |
| !!! | CTTAAACAAAGATTTTGAGT+TGG | + | chr4_4:44966242-44966261 | Msa0682920:intron | 25.0% |
| ! | ACTTGCATTATTCTTATGAT+TGG | - | chr4_4:44966271-44966290 | None:intergenic | 25.0% |
| !!! | TTACCTTTTTTTAAGAGAAG+AGG | + | chr4_4:44966436-44966455 | Msa0682920:intron | 25.0% |
| ! | TTTCCTCTTCTCTTAAAAAA+AGG | - | chr4_4:44966442-44966461 | None:intergenic | 25.0% |
| !! | ATTTTATATGCAGACATCAA+TGG | + | chr4_4:44966590-44966609 | Msa0682920:intron | 25.0% |
| !!! | TATTTTGAGCTGAAAATAGA+TGG | + | chr4_4:44966632-44966651 | Msa0682920:intron | 25.0% |
| ! | ATATCATTTATCTGAAAAGG+AGG | - | chr4_4:44966817-44966836 | None:intergenic | 25.0% |
| !! | TTAAGGTGTTACATCAATTA+AGG | - | chr4_4:44966847-44966866 | None:intergenic | 25.0% |
| !!! | AGATTGAGTTCTAATCATTT+TGG | - | chr4_4:44967072-44967091 | None:intergenic | 25.0% |
| !! | ATACATAGTCTGAAATAACA+TGG | - | chr4_4:44967508-44967527 | None:intergenic | 25.0% |
| !! | ATCTGATGATGTATCTTTAT+CGG | - | chr4_4:44967816-44967835 | None:intergenic | 25.0% |
| !!! | GGTGTTTTTTTTGGAGATTT+TGG | - | chr4_4:44964358-44964377 | None:intergenic | 30.0% |
| !!! | TTTCTGTTGTTTTTAGGAGA+CGG | - | chr4_4:44964516-44964535 | None:intergenic | 30.0% |
| ! | AATGCTTTGATGATACATGT+GGG | - | chr4_4:44965685-44965704 | None:intergenic | 30.0% |
| AGATCTTAAACAACTATGCA+TGG | + | chr4_4:44965712-44965731 | Msa0682920:intron | 30.0% | |
| TTAAACAACTATGCATGGTA+TGG | + | chr4_4:44965717-44965736 | Msa0682920:intron | 30.0% | |
| GAAAAATAAGGACCAAAAAG+TGG | + | chr4_4:44965931-44965950 | Msa0682920:intron | 30.0% | |
| TTAAAGGGACTAAAAATCGA+AGG | + | chr4_4:44965966-44965985 | Msa0682920:intron | 30.0% | |
| AAAAAAGAGCAGATTATGGT+CGG | + | chr4_4:44966301-44966320 | Msa0682920:intron | 30.0% | |
| ! | CTATTTTCAGCTCAAAATAG+TGG | - | chr4_4:44966631-44966650 | None:intergenic | 30.0% |
| ACACATCCATTCATCTAATT+TGG | + | chr4_4:44966729-44966748 | Msa0682920:intron | 30.0% | |
| AAGGAACCAAATTAGATGAA+TGG | - | chr4_4:44966738-44966757 | None:intergenic | 30.0% | |
| AAAGTGAAAGCTTAGTTGTA+AGG | - | chr4_4:44966757-44966776 | None:intergenic | 30.0% | |
| TTTATCTGAAAAGGAGGTTA+TGG | - | chr4_4:44966811-44966830 | None:intergenic | 30.0% | |
| TGGTATCTAGCATGAAATTA+AGG | - | chr4_4:44966864-44966883 | None:intergenic | 30.0% | |
| GAATATGACATTTAGGTGAA+AGG | - | chr4_4:44966929-44966948 | None:intergenic | 30.0% | |
| ! | TAAGGATTAGGCTTTTATAG+AGG | - | chr4_4:44966958-44966977 | None:intergenic | 30.0% |
| !! | CATTGATAATGCTAAGGATT+AGG | - | chr4_4:44966970-44966989 | None:intergenic | 30.0% |
| !! | TTGATGCATTGATAATGCTA+AGG | - | chr4_4:44966976-44966995 | None:intergenic | 30.0% |
| ATTGAAGTTGTGAAGATTGT+AGG | - | chr4_4:44967020-44967039 | None:intergenic | 30.0% | |
| TGATAGTTGAGATAAACTAG+TGG | - | chr4_4:44967144-44967163 | None:intergenic | 30.0% | |
| ! | AATGTGGGGACTAATGATTT+TGG | - | chr4_4:44964409-44964428 | None:intergenic | 35.0% |
| CATCACAACAATCCTCAAAA+AGG | + | chr4_4:44964468-44964487 | Msa0682920:CDS | 35.0% | |
| ! | AGAATGTTTTCGCCTTTTTG+AGG | - | chr4_4:44964483-44964502 | None:intergenic | 35.0% |
| !!! | TTGTTTTTAGGAGACGGATT+AGG | - | chr4_4:44964510-44964529 | None:intergenic | 35.0% |
| CTACATATTGAGGTAAGATG+TGG | - | chr4_4:44964684-44964703 | None:intergenic | 35.0% | |
| TACCAGCTATTGTTTGAACA+GGG | - | chr4_4:44964735-44964754 | None:intergenic | 35.0% | |
| TTACCAGCTATTGTTTGAAC+AGG | - | chr4_4:44964736-44964755 | None:intergenic | 35.0% | |
| CCTGATGCATAAACATTAAG+TGG | - | chr4_4:44964775-44964794 | None:intergenic | 35.0% | |
| CCACTTAATGTTTATGCATC+AGG | + | chr4_4:44964772-44964791 | Msa0682920:intron | 35.0% | |
| AACAATGTCAGTCTTTCAAC+CGG | + | chr4_4:44964796-44964815 | Msa0682920:CDS | 35.0% | |
| TTCTCCTTATTAGCAGCTTT+AGG | - | chr4_4:44964967-44964986 | None:intergenic | 35.0% | |
| TGATCAAGACCAAAATGATC+AGG | + | chr4_4:44964999-44965018 | Msa0682920:CDS | 35.0% | |
| ! | TACCTTGATCCTGATCATTT+TGG | - | chr4_4:44965011-44965030 | None:intergenic | 35.0% |
| !! | TTGTTGCTGTAGCATTGATA+TGG | + | chr4_4:44965082-44965101 | Msa0682920:intron | 35.0% |
| ATTGATATGGAGTTGACGAA+TGG | + | chr4_4:44965095-44965114 | Msa0682920:intron | 35.0% | |
| AAAGCAACAAAAAAGTGGCA+TGG | - | chr4_4:44965165-44965184 | None:intergenic | 35.0% | |
| ATGATACATGTGGGTCTATT+TGG | - | chr4_4:44965676-44965695 | None:intergenic | 35.0% | |
| ! | CAATGCTTTGATGATACATG+TGG | - | chr4_4:44965686-44965705 | None:intergenic | 35.0% |
| GAGGGACTTAAATGAAAAGT+TGG | + | chr4_4:44965998-44966017 | Msa0682920:intron | 35.0% | |
| !! | ATGCGAGTTCTAAAGAAAAG+AGG | + | chr4_4:44966120-44966139 | Msa0682920:intron | 35.0% |
| !! | CTAAAGAAAAGAGGTATCCA+TGG | + | chr4_4:44966129-44966148 | Msa0682920:intron | 35.0% |
| !! | TCAGCTCAAAATAGTGGATT+TGG | - | chr4_4:44966625-44966644 | None:intergenic | 35.0% |
| !! | TGTAATGTGTTGCTTTCAGT+TGG | - | chr4_4:44966672-44966691 | None:intergenic | 35.0% |
| !! | TTAGGTGAAAGGCTTTGTTA+TGG | - | chr4_4:44966918-44966937 | None:intergenic | 35.0% |
| GCTTGGAGAATATGACATTT+AGG | - | chr4_4:44966936-44966955 | None:intergenic | 35.0% | |
| ! | ATTAGGCTTTTATAGAGGCT+TGG | - | chr4_4:44966953-44966972 | None:intergenic | 35.0% |
| TAGTTGAGATAAACTAGTGG+TGG | - | chr4_4:44967141-44967160 | None:intergenic | 35.0% | |
| !! | AATGAAGGTACCAATGGTTT+AGG | - | chr4_4:44967224-44967243 | None:intergenic | 35.0% |
| CCAATAGTTGTGAATTGAGT+TGG | - | chr4_4:44967370-44967389 | None:intergenic | 35.0% | |
| CCAACTCAATTCACAACTAT+TGG | + | chr4_4:44967367-44967386 | Msa0682920:CDS | 35.0% | |
| ! | CAACTATTGGCTACAAAAAC+AGG | + | chr4_4:44967380-44967399 | Msa0682920:CDS | 35.0% |
| GAACTGAATGTTGTGAGTTA+CGG | + | chr4_4:44967596-44967615 | Msa0682920:CDS | 35.0% | |
| GAAGTGAACACAACAATCAA+TGG | + | chr4_4:44967644-44967663 | Msa0682920:CDS | 35.0% | |
| !! | CGTCTTGCTATTTACAAAGT+TGG | + | chr4_4:44967686-44967705 | Msa0682920:CDS | 35.0% |
| GAAACGGAAAAGAAATCCAT+AGG | - | chr4_4:44967725-44967744 | None:intergenic | 35.0% | |
| ! | GGATTTCTTTTCCGTTTCTA+AGG | + | chr4_4:44967727-44967746 | Msa0682920:CDS | 35.0% |
| !! | GATGTATCTTTATCGGCTTT+AGG | - | chr4_4:44967809-44967828 | None:intergenic | 35.0% |
| AATCCAACTGAAAACAAGTC+TGG | + | chr4_4:44967851-44967870 | Msa0682920:CDS | 35.0% | |
| TCAAGATTGTGTATGGAAAG+TGG | + | chr4_4:44967879-44967898 | Msa0682920:CDS | 35.0% | |
| !! | TGGACTTGTATTAGCTTTGA+CGG | + | chr4_4:44967910-44967929 | Msa0682920:CDS | 35.0% |
| TGCTTGTGAAAGGGATAATG+TGG | - | chr4_4:44964323-44964342 | None:intergenic | 40.0% | |
| TGATTCAGGTGCTTGTGAAA+GGG | - | chr4_4:44964332-44964351 | None:intergenic | 40.0% | |
| ATGATTCAGGTGCTTGTGAA+AGG | - | chr4_4:44964333-44964352 | None:intergenic | 40.0% | |
| !! | GGGACTAATGATTTTGGTGA+TGG | - | chr4_4:44964403-44964422 | None:intergenic | 40.0% |
| TCTGGTGATTCAGGTAATGT+GGG | - | chr4_4:44964424-44964443 | None:intergenic | 40.0% | |
| !!! | TTTTAGGAGACGGATTAGGA+CGG | - | chr4_4:44964506-44964525 | None:intergenic | 40.0% |
| CTTGAAAATGCTGAATCGTC+TGG | - | chr4_4:44964601-44964620 | None:intergenic | 40.0% | |
| !! | CATTTTCAAGCCTCAAAGCA+GGG | + | chr4_4:44964611-44964630 | Msa0682920:CDS | 40.0% |
| AGTTAAGAAACCCTGCTTTG+AGG | - | chr4_4:44964624-44964643 | None:intergenic | 40.0% | |
| TTTGAGCTCGCTACATATTG+AGG | - | chr4_4:44964694-44964713 | None:intergenic | 40.0% | |
| AACCCTGTTCAAACAATAGC+TGG | + | chr4_4:44964730-44964749 | Msa0682920:CDS | 40.0% | |
| !! | CATTAAGTGGAAGCCTTGTT+GGG | - | chr4_4:44964762-44964781 | None:intergenic | 40.0% |
| ! | ACATTAAGTGGAAGCCTTGT+TGG | - | chr4_4:44964763-44964782 | None:intergenic | 40.0% |
| ACAATGTCAGTCTTTCAACC+GGG | + | chr4_4:44964797-44964816 | Msa0682920:CDS | 40.0% | |
| CAAGCTCGCGATTTATCATT+TGG | + | chr4_4:44964861-44964880 | Msa0682920:CDS | 40.0% | |
| TTAGTAGCGAAGAAATCACG+AGG | - | chr4_4:44964901-44964920 | None:intergenic | 40.0% | |
| TCGTGATTTCTTCGCTACTA+AGG | + | chr4_4:44964900-44964919 | Msa0682920:CDS | 40.0% | |
| GACCAAAATGATCAGGATCA+AGG | + | chr4_4:44965006-44965025 | Msa0682920:CDS | 40.0% | |
| GATCAGGATCAAGGTAAATC+TGG | + | chr4_4:44965015-44965034 | Msa0682920:intron | 40.0% | |
| GTGAGATTGTGTGGAATTCT+TGG | + | chr4_4:44965042-44965061 | Msa0682920:intron | 40.0% | |
| GTTGACGAATGGTTTCCATT+TGG | + | chr4_4:44965106-44965125 | Msa0682920:intron | 40.0% | |
| TCTGAAAAGGAGGTTATGGT+GGG | - | chr4_4:44966807-44966826 | None:intergenic | 40.0% | |
| ATCTGAAAAGGAGGTTATGG+TGG | - | chr4_4:44966808-44966827 | None:intergenic | 40.0% | |
| AACTAGTAGTGCAAGTGAGA+AGG | - | chr4_4:44967102-44967121 | None:intergenic | 40.0% | |
| !! | TCTGGTAATGAAGGTACCAA+TGG | - | chr4_4:44967230-44967249 | None:intergenic | 40.0% |
| ! | CTATTGGCTACAAAAACAGG+TGG | + | chr4_4:44967383-44967402 | Msa0682920:CDS | 40.0% |
| TGGATTAACGATTCTTGCAC+CGG | + | chr4_4:44967403-44967422 | Msa0682920:CDS | 40.0% | |
| TTCCTTAACTCTCTTTCCGA+TGG | + | chr4_4:44967458-44967477 | Msa0682920:CDS | 40.0% | |
| AACATTCAGTTCCACCTTTC+CGG | - | chr4_4:44967588-44967607 | None:intergenic | 40.0% | |
| GAAGTGTGAACATATCGACA+GGG | + | chr4_4:44967621-44967640 | Msa0682920:CDS | 40.0% | |
| AAGTGTGAACATATCGACAG+GGG | + | chr4_4:44967622-44967641 | Msa0682920:CDS | 40.0% | |
| GGCTCTATCAAGATTGTGTA+TGG | + | chr4_4:44967872-44967891 | Msa0682920:CDS | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | + | chr4_4:44967890-44967909 | Msa0682920:CDS | 40.0% | |
| !! | GGAGATTTTGGGGATGATTC+AGG | - | chr4_4:44964346-44964365 | None:intergenic | 45.0% |
| !!! | TGATGGTGCTGTTGCTTTTG+GGG | - | chr4_4:44964386-44964405 | None:intergenic | 45.0% |
| !!! | GTGATGGTGCTGTTGCTTTT+GGG | - | chr4_4:44964387-44964406 | None:intergenic | 45.0% |
| CTGGTGATTCAGGTAATGTG+GGG | - | chr4_4:44964423-44964442 | None:intergenic | 45.0% | |
| GTCTGGTGATTCAGGTAATG+TGG | - | chr4_4:44964425-44964444 | None:intergenic | 45.0% | |
| TCTGTTGAGTCTGGTGATTC+AGG | - | chr4_4:44964433-44964452 | None:intergenic | 45.0% | |
| GGATTGTTGTGATGTCGTCA+GGG | - | chr4_4:44964462-44964481 | None:intergenic | 45.0% | |
| AGGATTGTTGTGATGTCGTC+AGG | - | chr4_4:44964463-44964482 | None:intergenic | 45.0% | |
| CAGCTCATCACAGCCAAAAA+CGG | + | chr4_4:44964556-44964575 | Msa0682920:CDS | 45.0% | |
| !! | GATTGTTAAGCCGCCGTTTT+TGG | - | chr4_4:44964572-44964591 | None:intergenic | 45.0% |
| !! | GCATTTTCAAGCCTCAAAGC+AGG | + | chr4_4:44964610-44964629 | Msa0682920:CDS | 45.0% |
| TAGCTGGTAAAGACCCAACA+AGG | + | chr4_4:44964746-44964765 | Msa0682920:intron | 45.0% | |
| CAATGTCAGTCTTTCAACCG+GGG | + | chr4_4:44964798-44964817 | Msa0682920:CDS | 45.0% | |
| GTTGTTACTGCTTCCGTTGT+GGG | + | chr4_4:44964820-44964839 | Msa0682920:CDS | 45.0% | |
| AGTGTACACAACACCCACAA+CGG | - | chr4_4:44964836-44964855 | None:intergenic | 45.0% | |
| GGCTCCTAAAGCTGCTAATA+AGG | + | chr4_4:44964960-44964979 | Msa0682920:CDS | 45.0% | |
| TCGAGATGCGTTGAATACCA+TGG | - | chr4_4:44966149-44966168 | None:intergenic | 45.0% | |
| CTGAAAAGGAGGTTATGGTG+GGG | - | chr4_4:44966806-44966825 | None:intergenic | 45.0% | |
| ! | GCTGGTAGTGTAGGTTGTAT+AGG | - | chr4_4:44967179-44967198 | None:intergenic | 45.0% |
| ! | CTAGGTGACTCTGGTAATGA+AGG | - | chr4_4:44967239-44967258 | None:intergenic | 45.0% |
| CATTGTCGGAATCCTGAGAA+AGG | + | chr4_4:44967292-44967311 | Msa0682920:CDS | 45.0% | |
| GTCCATCGGAAAGAGAGTTA+AGG | - | chr4_4:44967463-44967482 | None:intergenic | 45.0% | |
| ! | CAACTCGAGCTTTTGTCCAT+CGG | - | chr4_4:44967477-44967496 | None:intergenic | 45.0% |
| ACATTCAGTTCCACCTTTCC+GGG | - | chr4_4:44967587-44967606 | None:intergenic | 45.0% | |
| CTGAATGTTGTGAGTTACGG+AGG | + | chr4_4:44967599-44967618 | Msa0682920:CDS | 45.0% | |
| ! | GGAAGTGTGAACATATCGAC+AGG | + | chr4_4:44967620-44967639 | Msa0682920:CDS | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | + | chr4_4:44967706-44967725 | Msa0682920:CDS | 45.0% |
| !!! | CTTTTCCGTTTCTAAGGCAC+CGG | + | chr4_4:44967733-44967752 | Msa0682920:CDS | 45.0% |
| !!! | TTTTCCGTTTCTAAGGCACC+GGG | + | chr4_4:44967734-44967753 | Msa0682920:CDS | 45.0% |
| ACCTTCAACCGATACAGCAA+AGG | + | chr4_4:44967781-44967800 | Msa0682920:CDS | 45.0% | |
| ! | TTTAGGCGCCTTTGCTGTAT+CGG | - | chr4_4:44967792-44967811 | None:intergenic | 45.0% |
| TACATCATCAGATTCGTCGC+AGG | + | chr4_4:44967823-44967842 | Msa0682920:CDS | 45.0% | |
| !! | GAGCCAGACTTGTTTTCAGT+TGG | - | chr4_4:44967857-44967876 | None:intergenic | 45.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr4_4:44965793-44965812 | Msa0682920:intron | 5.0% |
| !!! | ATAATATACTTTTAATAAAA+TGG | - | chr4_4:44966102-44966121 | None:intergenic | 5.0% |
| !!! | GGGGTAGGGGGTGTTTTTTT+TGG | - | chr4_4:44964367-44964386 | None:intergenic | 50.0% |
| !!! | TGCTGTTGCTTTTGGGGTAG+GGG | - | chr4_4:44964380-44964399 | None:intergenic | 50.0% |
| !!! | GTGCTGTTGCTTTTGGGGTA+GGG | - | chr4_4:44964381-44964400 | None:intergenic | 50.0% |
| !!! | GGTGATGGTGCTGTTGCTTT+TGG | - | chr4_4:44964388-44964407 | None:intergenic | 50.0% |
| TGTTGTGATGTCGTCAGGGA+CGG | - | chr4_4:44964458-44964477 | None:intergenic | 50.0% | |
| CTCATCACAGCCAAAAACGG+CGG | + | chr4_4:44964559-44964578 | Msa0682920:CDS | 50.0% | |
| AACGGAAGCAGTAACAACCC+CGG | - | chr4_4:44964818-44964837 | None:intergenic | 50.0% | |
| GGTTGTTACTGCTTCCGTTG+TGG | + | chr4_4:44964819-44964838 | Msa0682920:CDS | 50.0% | |
| ! | TCTGGAGCAGTGAGATTGTG+TGG | + | chr4_4:44965033-44965052 | Msa0682920:intron | 50.0% |
| GGTTGTATAGGAGCAGTAGC+TGG | - | chr4_4:44967167-44967186 | None:intergenic | 50.0% | |
| AATGGTTTAGGAGCTGCAGC+TGG | - | chr4_4:44967212-44967231 | None:intergenic | 50.0% | |
| AGCTGCAGCTCCTAAACCAT+TGG | + | chr4_4:44967211-44967230 | Msa0682920:CDS | 50.0% | |
| GTGGAATCACTAGGTGACTC+TGG | - | chr4_4:44967248-44967267 | None:intergenic | 50.0% | |
| GACAATGTCAACAGTGCCTG+CGG | - | chr4_4:44967279-44967298 | None:intergenic | 50.0% | |
| ! | GCAGGCACTGTTGACATTGT+CGG | + | chr4_4:44967278-44967297 | Msa0682920:CDS | 50.0% |
| TGTATGCCTTCGCCTTTCTC+AGG | - | chr4_4:44967307-44967326 | None:intergenic | 50.0% | |
| ! | TCCTGCTTTGAGTCCTGCAA+AGG | - | chr4_4:44967438-44967457 | None:intergenic | 50.0% |
| AGCAAGTGTTCTCACAGGGT+TGG | - | chr4_4:44967555-44967574 | None:intergenic | 50.0% | |
| AACCCTGTGAGAACACTTGC+TGG | + | chr4_4:44967554-44967573 | Msa0682920:CDS | 50.0% | |
| CTCCAGCAAGTGTTCTCACA+GGG | - | chr4_4:44967559-44967578 | None:intergenic | 50.0% | |
| ! | ACACTTGCTGGAGCTAAACC+CGG | + | chr4_4:44967566-44967585 | Msa0682920:CDS | 50.0% |
| !! | TTTCCGTTTCTAAGGCACCG+GGG | + | chr4_4:44967735-44967754 | Msa0682920:CDS | 50.0% |
| ! | GAAGGTTCTGGTGCCAAAGA+TGG | - | chr4_4:44967767-44967786 | None:intergenic | 50.0% |
| !! | GCTGTATCGGTTGAAGGTTC+TGG | - | chr4_4:44967779-44967798 | None:intergenic | 50.0% |
| !! | GCCTTTGCTGTATCGGTTGA+AGG | - | chr4_4:44967785-44967804 | None:intergenic | 50.0% |
| !!! | GCTGTTGCTTTTGGGGTAGG+GGG | - | chr4_4:44964379-44964398 | None:intergenic | 55.0% |
| !!! | GGTGCTGTTGCTTTTGGGGT+AGG | - | chr4_4:44964382-44964401 | None:intergenic | 55.0% |
| ! | CGCTACTAAGGCACCTGCTT+TGG | + | chr4_4:44964912-44964931 | Msa0682920:CDS | 55.0% |
| TTAGCAGCAGCAGCACGAGT+TGG | - | chr4_4:44964940-44964959 | None:intergenic | 55.0% | |
| ! | AACTCGTGCTGCTGCTGCTA+AGG | + | chr4_4:44964939-44964958 | Msa0682920:CDS | 55.0% |
| ! | GTGGTTGGAGCTGGTAGTGT+AGG | - | chr4_4:44967188-44967207 | None:intergenic | 55.0% |
| TTTAGGAGCTGCAGCTGGTG+TGG | - | chr4_4:44967207-44967226 | None:intergenic | 55.0% | |
| GTGTCAGGGGTGGAATCACT+AGG | - | chr4_4:44967257-44967276 | None:intergenic | 55.0% | |
| CGGAATCCTGAGAAAGGCGA+AGG | + | chr4_4:44967298-44967317 | Msa0682920:CDS | 55.0% | |
| GCCTTTGCAGGACTCAAAGC+AGG | + | chr4_4:44967434-44967453 | Msa0682920:CDS | 55.0% | |
| GCTCCAGCAAGTGTTCTCAC+AGG | - | chr4_4:44967560-44967579 | None:intergenic | 55.0% | |
| TGCTGGAGCTAAACCCGGAA+AGG | + | chr4_4:44967571-44967590 | Msa0682920:CDS | 55.0% | |
| TGGAGCTAAACCCGGAAAGG+TGG | + | chr4_4:44967574-44967593 | Msa0682920:CDS | 55.0% | |
| CTTCCCCGGTGCCTTAGAAA+CGG | - | chr4_4:44967741-44967760 | None:intergenic | 55.0% | |
| GGGACGGAGTCTGTTGAGTC+TGG | - | chr4_4:44964442-44964461 | None:intergenic | 60.0% | |
| ATGCTGAATCGTCTGGCGCG+AGG | - | chr4_4:44964594-44964613 | None:intergenic | 60.0% | |
| ! | GCACGAGTTGGAGCCAAAGC+AGG | - | chr4_4:44964928-44964947 | None:intergenic | 60.0% |
| ! | AACAGTGCCTGCGGTGTCAG+GGG | - | chr4_4:44967270-44967289 | None:intergenic | 60.0% |
| ! | CAACAGTGCCTGCGGTGTCA+GGG | - | chr4_4:44967271-44967290 | None:intergenic | 60.0% |
| TCAACAGTGCCTGCGGTGTC+AGG | - | chr4_4:44967272-44967291 | None:intergenic | 60.0% | |
| !! | CCTGCAAAGGCGCTGTCATC+CGG | - | chr4_4:44967425-44967444 | None:intergenic | 60.0% |
| !! | CGTTTCTAAGGCACCGGGGA+AGG | + | chr4_4:44967739-44967758 | Msa0682920:CDS | 60.0% |
| !! | ACCGGGGAAGGCACCATCTT+TGG | + | chr4_4:44967751-44967770 | Msa0682920:CDS | 60.0% |
| GCCAAAGATGGTGCCTTCCC+CGG | - | chr4_4:44967755-44967774 | None:intergenic | 60.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | - | chr4_4:44967197-44967216 | None:intergenic | 65.0% | |
| GGAGCTGCAGCTGGTGTGGT+TGG | - | chr4_4:44967203-44967222 | None:intergenic | 65.0% | |
| GATTCCACCCCTGACACCGC+AGG | + | chr4_4:44967260-44967279 | Msa0682920:CDS | 65.0% | |
| CCGGATGACAGCGCCTTTGC+AGG | + | chr4_4:44967422-44967441 | Msa0682920:CDS | 65.0% | |
| ! | AGTGCCTGCGGTGTCAGGGG+TGG | - | chr4_4:44967267-44967286 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 44964268 | 44967949 | 44964268 | ID=Msa0682920;Name=Msa0682920 |
| chr4_4 | mRNA | 44964268 | 44967949 | 44964268 | ID=Msa0682920-mRNA-1;Parent=Msa0682920;Name=Msa0682920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|4|0|509 |
| chr4_4 | exon | 44964268 | 44964514 | 44964268 | ID=Msa0682920-mRNA-1:exon:10905;Parent=Msa0682920-mRNA-1 |
| chr4_4 | exon | 44964533 | 44964751 | 44964533 | ID=Msa0682920-mRNA-1:exon:10906;Parent=Msa0682920-mRNA-1 |
| chr4_4 | exon | 44964794 | 44965027 | 44964794 | ID=Msa0682920-mRNA-1:exon:10907;Parent=Msa0682920-mRNA-1 |
| chr4_4 | exon | 44967120 | 44967949 | 44967120 | ID=Msa0682920-mRNA-1:exon:10908;Parent=Msa0682920-mRNA-1 |
| chr4_4 | CDS | 44964268 | 44964514 | 44964268 | ID=Msa0682920-mRNA-1:cds;Parent=Msa0682920-mRNA-1 |
| chr4_4 | CDS | 44964533 | 44964751 | 44964533 | ID=Msa0682920-mRNA-1:cds;Parent=Msa0682920-mRNA-1 |
| chr4_4 | CDS | 44964794 | 44965027 | 44964794 | ID=Msa0682920-mRNA-1:cds;Parent=Msa0682920-mRNA-1 |
| chr4_4 | CDS | 44967120 | 44967949 | 44967120 | ID=Msa0682920-mRNA-1:cds;Parent=Msa0682920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
