AlfalfaGEDB | Msa0237470

M. sativa cultivar zhongmu-4 / Msa0237470

KEGG: -
GO: -
PFAM: PF20235.1

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237470	XP_003594059.2	98.409	880	14	0	1	880	1	880	0.0	1769

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237470	sp\|Q0WPJ7\|RF298_ARATH	37.431	903	434	20	5	879	14	813	5.21e-156	480

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237470	G7IFN5	98.409	880	14	0	1	880	1	880	0.0	1769

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037120	Msa0237470	0.802914	4.474864e-49	-8.615850e-47
Msa0077450	Msa0237470	0.804391	2.209201e-49	-8.615850e-47
Msa0083090	Msa0237470	0.818650	1.755175e-52	-8.615850e-47
Msa0084340	Msa0237470	0.807632	4.597854e-50	-8.615850e-47
Msa0092440	Msa0237470	0.818113	2.321979e-52	-8.615850e-47
Msa0129550	Msa0237470	0.809796	1.585399e-50	-8.615850e-47
Msa0138210	Msa0237470	0.842390	2.662240e-58	-8.615850e-47
Msa0143850	Msa0237470	0.802939	4.421555e-49	-8.615850e-47
Msa0183420	Msa0237470	0.803418	3.519974e-49	-8.615850e-47
Msa0189110	Msa0237470	0.816796	4.598196e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237470	MtrunA17_Chr2g0286891	98.409	880	14	0	1	880	1	880	0.0	1769
Msa0237470	MtrunA17_Chr1g0196471	33.938	772	381	19	117	877	75	728	2.42e-110	355
Msa0237470	MtrunA17_Chr4g0054731	42.297	357	193	4	519	875	389	732	2.14e-70	247
Msa0237470	MtrunA17_Chr4g0054731	44.295	149	61	2	118	245	77	224	8.25e-31	130
Msa0237470	MtrunA17_Chr4g0064071	40.667	150	52	1	519	668	126	238	9.82e-21	92.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237470	AT4G03000.1	37.431	903	434	20	5	879	14	813	5.29e-157	480
Msa0237470	AT4G03000.2	37.431	903	434	20	5	879	14	813	5.29e-157	480
Msa0237470	AT1G03365.1	37.614	880	454	20	15	880	24	822	3.39e-145	450
Msa0237470	AT1G03365.2	37.614	880	454	20	15	880	24	822	3.39e-145	450
Msa0237470	AT4G03000.4	34.855	723	344	19	5	699	14	637	7.84e-95	312
Msa0237470	AT4G03000.6	34.855	723	344	19	5	699	14	637	7.84e-95	312
Msa0237470	AT4G03000.3	34.855	723	344	19	5	699	14	637	2.41e-94	312
Msa0237470	AT4G03000.5	34.855	723	344	19	5	699	14	637	4.95e-94	312
Msa0237470	AT2G35330.2	41.341	358	192	5	522	875	363	706	5.09e-73	254
Msa0237470	AT2G35330.2	43.038	158	76	4	118	264	71	225	6.69e-29	124

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Find 202 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGAGAACAAATTG+AGG	0.556625	2_2:-10638339	Msa0237470:CDS
AAAATGTGGGATTGTTAGAA+AGG	0.475135	2_2:-10640011	Msa0237470:CDS
AAAGCAAGCCGAAGTGCAAG+CGG	0.595548	2_2:-10638964	Msa0237470:CDS
AAATAGTATCACTAGAATCC+AGG	0.544420	2_2:+10639702	None:intergenic
AAATATCACAGGCTAAACGG+CGG	0.736276	2_2:-10638412	Msa0237470:intron
AACAGAAGAACTTCTCTCCA+TGG	0.554042	2_2:-10638375	Msa0237470:CDS
AACCAGTTCTGAAATAGACG+CGG	0.688246	2_2:+10638100	None:intergenic
AACGAGCTAATACTGCAGTA+CGG	0.665440	2_2:-10639193	Msa0237470:CDS
AACGCACAGAAATTCGCTCC+TGG	0.525525	2_2:+10637892	None:intergenic
AACTTCAAGAATGGACAGAG+TGG	0.640249	2_2:-10639400	Msa0237470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGATCGATCTTAGAACAT+CGG	+	chr2_2:10637871-10637890	None:intergenic	30.0%
GTTTGTCAATCTTCTTCAAT+CGG	-	chr2_2:10637900-10637919	Msa0237470:CDS	30.0%
TTTGTCAATCTTCTTCAATC+GGG	-	chr2_2:10637901-10637920	Msa0237470:CDS	30.0%
TGGCAAAATGAAAATCAACA+AGG	+	chr2_2:10638381-10638400	None:intergenic	30.0%
CAAGTACTATCAAAACGTAA+TGG	+	chr2_2:10638401-10638420	None:intergenic	30.0%
TAACAGTCAAATGTCTTCTT+CGG	-	chr2_2:10638938-10638957	Msa0237470:intron	30.0%
AAAATGTGGGATTGTTAGAA+AGG	-	chr2_2:10639931-10639950	Msa0237470:CDS	30.0%
GAAAAAAGTTATCGGACATA+CGG	-	chr2_2:10640010-10640029	Msa0237470:CDS	30.0%
AAAAAAGTTATCGGACATAC+GGG	-	chr2_2:10640011-10640030	Msa0237470:CDS	30.0%
TGCTTCTATAAACATAAGCA+AGG	-	chr2_2:10640138-10640157	Msa0237470:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	10637736	10642228	10637736	ID=Msa0237470;Name=Msa0237470
chr2_2	mRNA	10637736	10642228	10637736	ID=Msa0237470-mRNA-1;Parent=Msa0237470;Name=Msa0237470-mRNA-1;_AED=0.07;_eAED=0.07;_QI=230\|1\|1\|1\|0.33\|0.25\|4\|142\|880
chr2_2	exon	10637736	10638423	10637736	ID=Msa0237470-mRNA-1:exon:4667;Parent=Msa0237470-mRNA-1
chr2_2	exon	10638953	10641053	10638953	ID=Msa0237470-mRNA-1:exon:4666;Parent=Msa0237470-mRNA-1
chr2_2	exon	10641724	10641762	10641724	ID=Msa0237470-mRNA-1:exon:4665;Parent=Msa0237470-mRNA-1
chr2_2	exon	10642042	10642228	10642042	ID=Msa0237470-mRNA-1:exon:4664;Parent=Msa0237470-mRNA-1
chr2_2	five_prime_UTR	10642042	10642228	10642042	ID=Msa0237470-mRNA-1:five_prime_utr;Parent=Msa0237470-mRNA-1
chr2_2	five_prime_UTR	10641724	10641762	10641724	ID=Msa0237470-mRNA-1:five_prime_utr;Parent=Msa0237470-mRNA-1
chr2_2	five_prime_UTR	10641050	10641053	10641050	ID=Msa0237470-mRNA-1:five_prime_utr;Parent=Msa0237470-mRNA-1
chr2_2	CDS	10638953	10641049	10638953	ID=Msa0237470-mRNA-1:cds;Parent=Msa0237470-mRNA-1
chr2_2	CDS	10637878	10638423	10637878	ID=Msa0237470-mRNA-1:cds;Parent=Msa0237470-mRNA-1
chr2_2	three_prime_UTR	10637736	10637877	10637736	ID=Msa0237470-mRNA-1:three_prime_utr;Parent=Msa0237470-mRNA-1

Gene Sequence

>Msa0237470

ATGGCATCACTGGTTGTCAGTGGTAACAGTCAAATGTCTTCTTCGGTTTCTGTTCAAGAAAAAGGAAGTAGAAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGGGAGTCAAGTAAGAGTATATCTTCACTTCAACATGAGAGCCTAAGTTATGAATTCTCTGCTGAAAAAGTCGAAATTACCCCATGTTTTGGGCAAGTCACAGCTTCTGACTTGTGCACTGTTAGCCACGGTTGTTCTGATGGCTTGAAGCTCGACCTTGGATTATCTAGCCCTGCAGTTTCATCTGAGGTCAGGCTTAGCCAGCCTAAGGAGGAATTAGAAGTGGTTGAGTCCCATGGCGCTGATTGGAGTGATCACACAGAAACTCAGTTGCAAGAACTTGTCTTGAGCAATTTGCAAACCATTTTCAAGAGTGCAATAAAAAAAATTGTTGCTTGTGGCTACACTGAAGATGTTGCTACAAAGGCTATGTTAAGACCCGGCATCTGTTATGGATGCAAAGACACTGTGTCTAATATAGTTGACAACACTTTAGCTTTTTTGAGAAACGGTCAAGAGTTTGATCCTTCACGAGAGCACTATTTTAAAGATTTAGCCGAGCTTCAGAATTACATCTTGGCCGAATTGGTTTGCGTTCTTCAAGAGGTTAGGCCATTTTTCAGTTTCGGAGATGCAATGTGGTGTTTGTTAATCAGTGACATGAACGTGTCACATGCTTGTGCAATGGATGGTGACCCTTTAAGTAGTTTATGCAGCGATGGCATTGGTGATGGCTCTTCTTCTGTCCAGACTGAATCACAATCAAAAGCTGAAATAAAAAGTTCGGAATTGAGTCTTCCAAGTCCTTGTAATTCAATTCCCCCAGGCACTCAATCTGAGAAATCCGTTGTGGCAGAAAATTCTCAAATTCGCGGTGGACTCTTGGAAAAACAGAGTGCTAATTCTGGATGTCATTCTGTTGACAAGTCATCTAATGCTTCCGGAACCTCTCAATCTCCCCTGCTACAAGAAAAATGTGGGATTGTTAGAAAGGTCCATTCGAGTAGCACCAAGAGGGAGTACATTTTTCGTCAGAAGTCAATCCACGTGGAAAAAAGTTATCGGACATACGGGTCTAAAGGGTCTTCAAGAGGAGGAAAGCTGAGTGGTTTGAGTGGTTTAATCCTGGATAAAAAACTTAAATCAGTATCTGAATCTACTGCCATAAACTTAAAGAGTGCTTCTATAAACATAAGCAAGGCAGTGGGAATTGATGTCACTCAAAACAATCATAACACCCATTTCTCATCTAATAATGGACCATCTACCCCAACATTTAGCCTGGATTCTAGTGATACTATTTCTCGTGCAGCTGATTCTTCATCTTCAGAACATGAAGCAAATCCTATACCAGCAGTCAGTAGTCCCCCAGATGCATTATCAGCTACAGACACTGACCTTTCTCTTTCATTGTCTTCAAAAGGCAATTCTTCTATAGCCCCTATCTGCTGTAATAACAAGTCACATAGTAGTAGTTGTGTGGGGATACCATATGACAAGTCCATGAGACAATGGTTGCCCCAAGATAGAAAAGATGAGTTGATTCTGAAGATGGTTCCGAGGGTTCGGGAGCTGCAAAATGAACTTCAAGAATGGACAGAGTGGGCAAATCAAAAGGTGATGCAGGCTGCTCGTCGACTGAGTAAGGACAAGGCTGAGCTTAAGACACTAAGGCAAGAGAAAGAAGAAGTTGAACGACTTAAAAAGGAGAAACAATGCCTTGAAGAAAACACCATGAAAAAGCTTTCTGAGATGGAAAATGCCTTGGGTAAAGCAGGTGGACAAGTGGAACGAGCTAATACTGCAGTACGGAAGCTCGAGATGGAGAATGCTGCATTGAGGAAAGAGATGGAGGCTGCTAAGTTACGTGCGGAAGAATCAGCAACAAACTTTCAAGAGGTCTCTAAGAGAGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAATCAGAAATCGTTGTTACAGGAAGAGCTAATGACTGAAAAAAACAAATTGGCACAGATATCGAAGGAATCAAAGCAAGCCGAAGTGCAAGCGGAGCAATTCGAGGCTAAACGGCGGCAGGCAGCAAAGAAAACAGAAGAACTTCTCTCCATGGTCAGTTCTATACGAAAAGAAAGAGAACAAATTGAGGAGTCGGCTAGAACCAAGGAGGAGAGGATCAAATTGGAAGCGGAGAAGGAGCTGCGAAGATACAAAGACGACATCCAGAAACTTGAAAAAGAAATTGCACAAATAAGACAGAAGTCCGACTCTTCAAAAATTGCTGCACTAAAAAGAGGAATCGATGGAAGCTATGCCGGTAGCTTCAAGGACACGAAAAAGGGTTCTGGTTTTGAAGAACCCCACACCGCGTCTATTTCAGAACTGGTTCAAAAGTTAAATAACTTCTCTATGAACGGAGGAGGTGTGAAACGGGAAAGGGAGTGCGTGATGTGCCTTTCGGAAGAGATGTCTGTTGTATTTCTTCCATGTGCACATCAAGTTGTTTGCACAAAGTGCAATGAGCTCCATGAGAAGCAGGGAATGCAAGATTGTCCTTCTTGCAGGAGCCCCATCCAGGAGCGAATTTCTGTGCGTTATGCGCGTACATAA

Protein sequence

>Msa0237470

MASLVVSGNSQMSSSVSVQEKGSRNKRKFRADPPLGESSKSISSLQHESLSYEFSAEKVEITPCFGQVTASDLCTVSHGCSDGLKLDLGLSSPAVSSEVRLSQPKEELEVVESHGADWSDHTETQLQELVLSNLQTIFKSAIKKIVACGYTEDVATKAMLRPGICYGCKDTVSNIVDNTLAFLRNGQEFDPSREHYFKDLAELQNYILAELVCVLQEVRPFFSFGDAMWCLLISDMNVSHACAMDGDPLSSLCSDGIGDGSSSVQTESQSKAEIKSSELSLPSPCNSIPPGTQSEKSVVAENSQIRGGLLEKQSANSGCHSVDKSSNASGTSQSPLLQEKCGIVRKVHSSSTKREYIFRQKSIHVEKSYRTYGSKGSSRGGKLSGLSGLILDKKLKSVSESTAINLKSASINISKAVGIDVTQNNHNTHFSSNNGPSTPTFSLDSSDTISRAADSSSSEHEANPIPAVSSPPDALSATDTDLSLSLSSKGNSSIAPICCNNKSHSSSCVGIPYDKSMRQWLPQDRKDELILKMVPRVRELQNELQEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQCLEENTMKKLSEMENALGKAGGQVERANTAVRKLEMENAALRKEMEAAKLRAEESATNFQEVSKREKKTQMKFQSWENQKSLLQEELMTEKNKLAQISKESKQAEVQAEQFEAKRRQAAKKTEELLSMVSSIRKEREQIEESARTKEERIKLEAEKELRRYKDDIQKLEKEIAQIRQKSDSSKIAALKRGIDGSYAGSFKDTKKGSGFEEPHTASISELVQKLNNFSMNGGGVKRERECVMCLSEEMSVVFLPCAHQVVCTKCNELHEKQGMQDCPSCRSPIQERISVRYART*