AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0240660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240660 MtrunA17_Chr7g0259221 96.657 329 11 0 3 331 149 477 0.0 628
Msa0240660 MtrunA17_Chr7g0259471 90.881 329 30 0 3 331 147 475 0.0 597
Msa0240660 MtrunA17_Chr4g0066581 59.202 326 132 1 5 329 161 486 3.44e-137 398
Msa0240660 MtrunA17_Chr2g0286721 58.589 326 134 1 5 329 158 483 1.50e-132 386
Msa0240660 MtrunA17_Chr7g0273281 51.385 325 158 0 5 329 171 495 2.49e-121 358
Msa0240660 MtrunA17_Chr1g0155221 45.732 328 172 2 5 326 158 485 1.69e-100 304
Msa0240660 MtrunA17_Chr8g0373181 44.954 327 175 3 5 326 156 482 1.83e-98 299
Msa0240660 MtrunA17_Chr8g0373191 44.578 332 177 3 5 330 128 458 9.76e-95 288
Msa0240660 MtrunA17_Chr7g0273261 49.778 225 111 1 105 329 15 237 3.65e-80 244
Msa0240660 MtrunA17_Chr6g0457781 32.530 332 208 6 7 329 218 542 2.50e-51 178
Msa0240660 MtrunA17_Chr1g0213631 33.134 335 203 7 8 326 100 429 2.99e-51 176
Msa0240660 MtrunA17_Chr7g0250881 31.928 332 210 6 7 329 178 502 1.33e-48 170
Msa0240660 MtrunA17_Chr4g0032021 31.818 352 208 9 4 330 211 555 4.18e-48 169
Msa0240660 MtrunA17_Chr4g0021771 32.448 339 203 9 8 326 167 499 6.02e-48 169
Msa0240660 MtrunA17_Chr1g0213611 32.544 338 204 7 8 326 193 525 1.32e-47 168
Msa0240660 MtrunA17_Chr4g0039651 32.081 346 206 10 4 327 160 498 7.01e-47 165
Msa0240660 MtrunA17_Chr7g0214451 33.134 335 202 8 8 326 148 476 1.51e-46 164
Msa0240660 MtrunA17_Chr7g0221631 90.123 81 6 1 216 296 39 117 2.70e-45 150
Msa0240660 MtrunA17_Chr4g0034681 30.312 353 210 8 8 328 142 490 9.64e-42 152
Msa0240660 MtrunA17_Chr2g0282031 31.548 336 210 5 8 326 165 497 3.32e-41 150
Msa0240660 MtrunA17_Chr3g0144361 31.161 353 205 8 8 326 140 488 3.91e-41 150
Msa0240660 MtrunA17_Chr3g0115711 31.212 330 214 5 8 325 154 482 4.26e-39 144
Msa0240660 MtrunA17_Chr3g0115741 30.952 336 208 9 8 325 157 486 9.13e-38 140
Msa0240660 MtrunA17_Chr4g0065324 29.518 332 217 7 7 325 159 486 6.88e-36 135
Msa0240660 MtrunA17_Chr3g0115781 29.341 334 218 7 8 326 156 486 7.57e-36 135
Msa0240660 MtrunA17_Chr3g0115751 29.641 334 215 8 8 325 159 488 8.75e-36 135
Msa0240660 MtrunA17_Chr4g0036021 30.791 354 206 11 8 328 139 486 1.19e-35 135
Msa0240660 MtrunA17_Chr3g0121674 31.399 293 172 9 50 325 2 282 4.12e-35 129
Msa0240660 MtrunA17_Chr3g0115721 29.217 332 219 6 8 325 154 483 4.26e-35 133
Msa0240660 MtrunA17_Chr4g0004821 30.699 329 217 6 9 331 151 474 2.58e-33 128
Msa0240660 MtrunA17_Chr4g0065311 29.042 334 216 8 7 325 151 478 5.43e-33 127
Msa0240660 MtrunA17_Chr3g0128171 30.029 343 215 7 2 325 102 438 1.21e-32 126
Msa0240660 MtrunA17_Chr8g0390141 29.518 332 218 9 7 325 157 485 1.35e-32 126
Msa0240660 MtrunA17_Chr5g0404191 41.935 124 72 0 5 128 159 282 3.86e-32 121
Msa0240660 MtrunA17_Chr3g0078791 27.381 336 213 6 2 325 94 410 4.62e-32 124
Msa0240660 MtrunA17_Chr1g0205691 27.083 336 230 5 7 329 154 487 6.75e-32 124
Msa0240660 MtrunA17_Chr5g0394341 26.409 337 231 7 7 329 154 487 9.29e-32 124
Msa0240660 MtrunA17_Chr6g0486021 28.107 338 212 7 9 330 165 487 1.28e-31 123
Msa0240660 MtrunA17_Chr4g0065351 29.231 325 213 6 14 325 1 321 2.00e-31 121
Msa0240660 MtrunA17_Chr6g0485661 28.909 339 210 6 8 321 170 502 2.37e-31 123
Msa0240660 MtrunA17_Chr5g0420841 28.947 342 222 9 2 326 148 485 4.02e-31 122
Msa0240660 MtrunA17_Chr5g0404181 51.020 98 48 0 229 326 31 128 7.21e-31 113
Msa0240660 MtrunA17_Chr5g0432581 30.199 351 211 11 8 326 131 479 8.65e-31 121
Msa0240660 MtrunA17_Chr1g0205671 26.488 336 232 5 7 329 154 487 1.34e-30 120
Msa0240660 MtrunA17_Chr3g0085971 27.859 341 227 8 2 326 148 485 3.39e-30 120
Msa0240660 MtrunA17_Chr3g0128081 28.824 340 223 7 2 325 149 485 4.92e-30 119
Msa0240660 MtrunA17_Chr3g0115731 29.268 287 194 4 47 325 177 462 5.35e-30 119
Msa0240660 MtrunA17_Chr5g0417611 28.863 343 219 8 2 325 150 486 7.47e-30 119
Msa0240660 MtrunA17_Chr1g0205681 26.190 336 233 5 7 329 155 488 8.30e-30 119
Msa0240660 MtrunA17_Chr8g0390521 28.696 345 214 9 8 326 130 468 1.01e-29 118
Msa0240660 MtrunA17_Chr7g0257631 28.485 330 223 6 7 325 191 518 2.39e-29 117
Msa0240660 MtrunA17_Chr8g0373531 30.769 351 209 10 8 326 131 479 2.42e-29 117
Msa0240660 MtrunA17_Chr3g0078971 26.488 336 226 8 7 326 154 484 2.07e-28 115
Msa0240660 MtrunA17_Chr5g0445601 27.273 330 227 6 7 325 157 484 2.46e-28 114
Msa0240660 MtrunA17_Chr4g0048411 27.515 338 222 7 7 326 154 486 3.92e-28 114
Msa0240660 MtrunA17_Chr8g0376601 32.127 221 137 4 8 215 141 361 4.14e-28 114
Msa0240660 MtrunA17_Chr8g0376601 39.130 92 55 1 229 319 450 541 5.61e-13 69.7
Msa0240660 MtrunA17_Chr3g0078991 26.866 335 227 8 7 326 154 485 9.47e-28 113
Msa0240660 MtrunA17_Chr8g0390261 25.904 332 230 7 7 325 157 485 9.50e-28 113
Msa0240660 MtrunA17_Chr7g0259451 92.000 50 4 0 245 294 1 50 1.14e-27 102
Msa0240660 MtrunA17_Chr6g0486681 25.904 332 230 8 7 325 157 485 1.70e-27 112
Msa0240660 MtrunA17_Chr6g0486671 25.904 332 230 8 7 325 157 485 1.70e-27 112
Msa0240660 MtrunA17_Chr1g0173341 94.545 55 3 0 163 217 67 121 5.29e-27 103
Msa0240660 MtrunA17_Chr4g0048051 28.235 340 217 7 7 326 154 486 5.74e-27 110
Msa0240660 MtrunA17_Chr1g0164851 28.012 332 225 5 7 326 155 484 7.31e-27 110
Msa0240660 MtrunA17_Chr1g0164871 27.711 332 226 5 7 326 155 484 1.48e-26 109
Msa0240660 MtrunA17_Chr3g0119401 28.035 346 207 10 7 329 206 532 1.83e-26 109
Msa0240660 MtrunA17_Chr2g0303731 30.804 224 136 6 8 215 141 361 6.96e-26 108
Msa0240660 MtrunA17_Chr2g0303731 40.000 100 57 2 229 326 452 550 5.33e-14 72.8
Msa0240660 MtrunA17_Chr5g0403831 26.316 361 215 9 7 326 142 492 2.21e-25 106
Msa0240660 MtrunA17_Chr8g0376611 31.220 205 128 4 8 199 74 278 3.42e-25 105
Msa0240660 MtrunA17_Chr8g0376611 36.893 103 56 2 229 326 382 480 7.66e-13 68.9
Msa0240660 MtrunA17_Chr2g0303701 29.864 221 137 5 8 214 141 357 1.18e-24 104
Msa0240660 MtrunA17_Chr5g0437021 27.246 334 225 7 7 326 155 484 3.34e-24 102
Msa0240660 MtrunA17_Chr8g0376631 30.049 203 129 4 8 197 141 343 3.53e-24 103
Msa0240660 MtrunA17_Chr8g0376631 37.864 103 55 2 229 326 451 549 5.92e-14 72.8
Msa0240660 MtrunA17_Chr7g0273271 57.746 71 30 0 5 75 136 206 3.28e-21 90.1
Msa0240660 MtrunA17_Chr5g0419321 29.921 254 152 6 93 323 479 729 2.14e-20 92.0
Msa0240660 MtrunA17_Chr5g0419321 36.634 101 56 3 8 101 146 245 6.09e-12 66.6
Msa0240660 MtrunA17_Chr3g0146061 30.000 230 143 4 109 323 495 721 5.93e-19 87.8
Msa0240660 MtrunA17_Chr3g0146061 40.426 94 49 3 7 93 117 210 3.79e-11 64.3
Msa0240660 MtrunA17_Chr3g0144261 31.163 215 131 3 123 323 500 711 7.28e-19 87.4
Msa0240660 MtrunA17_Chr3g0144261 40.196 102 53 3 7 101 115 215 1.77e-13 71.2
Msa0240660 MtrunA17_Chr2g0290181 29.310 232 142 7 8 220 142 370 1.15e-18 86.7
Msa0240660 MtrunA17_Chr2g0290181 35.354 99 63 1 229 326 455 553 6.78e-13 69.3
Msa0240660 MtrunA17_Chr5g0407441 30.172 232 144 5 107 323 475 703 2.80e-18 85.9
Msa0240660 MtrunA17_Chr5g0407441 37.624 101 55 3 8 101 118 217 1.62e-12 68.6
Msa0240660 MtrunA17_Chr5g0434261 25.083 303 182 8 56 319 7 303 1.05e-17 82.4
Msa0240660 MtrunA17_Chr8g0370151 27.615 239 149 5 106 323 107 342 7.27e-17 80.5
Msa0240660 MtrunA17_Chr2g0290161 27.200 250 133 8 8 240 75 292 1.00e-14 74.7
Msa0240660 MtrunA17_Chr5g0434251 34.906 106 60 2 229 329 38 139 2.31e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240660 AT2G48020.2 72.308 325 90 0 3 327 135 459 1.51e-173 490
Msa0240660 AT2G48020.1 72.308 325 90 0 3 327 135 459 1.51e-173 490
Msa0240660 AT5G18840.1 57.927 328 137 1 3 329 151 478 1.49e-130 381
Msa0240660 AT3G05150.2 55.046 327 146 1 5 330 144 470 4.82e-127 372
Msa0240660 AT3G05150.1 54.740 327 147 1 5 330 144 470 6.21e-127 372
Msa0240660 AT3G05150.3 54.740 327 147 1 5 330 144 470 6.21e-127 372
Msa0240660 AT1G54730.2 50.765 327 161 0 3 329 139 465 1.97e-121 357
Msa0240660 AT2G48020.4 69.231 234 72 0 3 236 135 368 2.87e-112 331
Msa0240660 AT1G54730.3 52.055 292 140 0 3 294 139 430 6.02e-109 324
Msa0240660 AT1G54730.5 47.706 327 150 1 3 329 139 444 2.57e-108 323
Msa0240660 AT3G05165.3 47.077 325 172 0 5 329 139 463 7.35e-107 320
Msa0240660 AT3G05165.2 47.077 325 172 0 5 329 139 463 7.35e-107 320
Msa0240660 AT3G05165.1 47.077 325 172 0 5 329 139 463 7.35e-107 320
Msa0240660 AT3G05160.3 46.462 325 174 0 5 329 81 405 3.12e-106 317
Msa0240660 AT3G05160.2 46.462 325 174 0 5 329 81 405 3.12e-106 317
Msa0240660 AT3G05160.1 46.462 325 174 0 5 329 130 454 1.27e-105 317
Msa0240660 AT3G05155.1 45.820 323 171 2 5 326 136 455 1.47e-100 304
Msa0240660 AT1G19450.1 46.547 333 163 3 5 327 158 485 1.97e-100 304
Msa0240660 AT1G08920.1 44.308 325 181 0 5 329 141 465 2.10e-99 301
Msa0240660 AT1G08930.1 44.000 325 182 0 3 327 165 489 2.33e-99 302
Msa0240660 AT1G08930.2 44.000 325 182 0 3 327 165 489 2.33e-99 302
Msa0240660 AT4G04760.3 45.872 327 174 1 4 327 80 406 9.76e-99 298
Msa0240660 AT1G75220.1 46.341 328 171 2 5 327 157 484 1.17e-98 300
Msa0240660 AT4G04760.1 45.872 327 174 1 4 327 139 465 5.65e-98 298
Msa0240660 AT4G04750.1 44.785 326 178 1 5 328 145 470 7.62e-98 298
Msa0240660 AT4G04750.2 44.785 326 178 1 5 328 145 470 7.62e-98 298
Msa0240660 AT4G04750.3 44.785 326 178 1 5 328 189 514 1.55e-97 298
Msa0240660 AT3G05400.2 46.037 328 173 3 5 330 115 440 6.10e-97 294
Msa0240660 AT3G05400.1 46.037 328 173 3 5 330 135 460 9.42e-97 294
Msa0240660 AT1G08920.2 43.373 332 181 1 5 329 141 472 9.53e-97 295
Msa0240660 AT5G27360.2 43.865 326 183 0 5 330 40 365 5.13e-96 289
Msa0240660 AT5G27360.5 43.865 326 183 0 5 330 40 365 5.13e-96 289
Msa0240660 AT1G54730.4 48.630 292 129 1 3 294 139 409 1.09e-95 290
Msa0240660 AT5G27350.1 44.172 326 182 0 5 330 140 465 6.45e-95 290
Msa0240660 AT5G27360.1 43.865 326 183 0 5 330 144 469 7.23e-95 290
Msa0240660 AT3G20460.1 43.385 325 184 0 5 329 162 486 8.99e-95 290
Msa0240660 AT5G27360.3 43.865 326 183 0 5 330 192 517 2.05e-94 290
Msa0240660 AT2G48020.3 69.543 197 60 0 3 199 135 331 7.43e-94 283
Msa0240660 AT3G05165.6 46.102 295 159 0 5 299 139 433 2.86e-92 284
Msa0240660 AT1G54730.9 50.000 258 129 0 3 260 139 396 2.12e-88 271
Msa0240660 AT1G54730.7 50.000 258 129 0 3 260 139 396 2.12e-88 271
Msa0240660 AT1G08920.3 44.138 290 162 0 5 294 141 430 1.63e-86 268
Msa0240660 AT1G08900.5 40.184 326 195 0 5 330 92 417 1.45e-84 261
Msa0240660 AT1G08890.1 39.692 325 196 0 5 329 136 460 1.80e-84 263
Msa0240660 AT1G08900.3 40.184 326 195 0 5 330 126 451 2.40e-84 262
Msa0240660 AT1G08900.1 40.184 326 195 0 5 330 134 459 3.09e-84 262
Msa0240660 AT1G08900.2 40.184 326 195 0 5 330 134 459 3.09e-84 262
Msa0240660 AT4G04760.2 43.333 330 175 4 4 327 139 462 7.70e-84 261
Msa0240660 AT3G05165.4 45.196 281 154 0 5 285 139 419 2.09e-83 260
Msa0240660 AT3G05165.5 45.196 281 154 0 5 285 139 419 2.09e-83 260
Msa0240660 AT1G54730.8 46.124 258 118 1 3 260 139 375 3.37e-75 236
Msa0240660 AT1G08900.4 40.690 290 172 0 5 294 134 423 2.66e-71 228
Msa0240660 AT1G54730.11 52.041 196 94 0 3 198 139 334 1.19e-67 216
Msa0240660 AT5G27360.4 39.837 246 148 0 5 250 144 389 2.57e-59 197
Msa0240660 AT1G54730.10 51.429 175 85 0 3 177 139 313 8.13e-59 192
Msa0240660 AT1G54730.6 51.429 175 85 0 3 177 139 313 8.13e-59 192
Msa0240660 AT3G05155.2 45.876 194 102 1 5 198 136 326 8.06e-55 182
Msa0240660 AT2G43330.1 32.738 336 204 9 8 326 146 476 8.19e-49 171
Msa0240660 AT5G16150.2 31.437 334 213 6 7 331 218 544 1.17e-48 171
Msa0240660 AT5G16150.1 31.437 334 213 6 7 331 218 544 1.17e-48 171
Msa0240660 AT5G16150.3 31.437 334 213 6 7 331 218 544 1.17e-48 171
Msa0240660 AT5G17010.1 33.141 347 201 10 4 327 162 500 3.03e-48 169
Msa0240660 AT5G17010.3 33.141 347 201 10 4 327 162 500 3.03e-48 169
Msa0240660 AT5G17010.4 33.141 347 201 10 4 327 162 500 3.03e-48 169
Msa0240660 AT3G03090.1 32.754 345 205 9 4 327 162 500 4.41e-47 166
Msa0240660 AT5G59250.1 32.102 352 207 10 4 330 213 557 7.01e-47 166
Msa0240660 AT2G20780.2 30.838 334 213 8 8 326 109 439 1.24e-40 148
Msa0240660 AT2G20780.1 30.838 334 213 8 8 326 167 497 4.25e-40 147
Msa0240660 AT2G16120.1 29.014 355 210 11 8 326 138 486 1.40e-36 138
Msa0240660 AT2G16130.1 28.652 356 212 11 8 327 138 487 1.09e-35 135
Msa0240660 AT1G67300.2 29.799 349 197 9 9 331 166 492 2.01e-35 134
Msa0240660 AT1G67300.1 29.885 348 197 9 9 331 166 491 2.28e-35 134
Msa0240660 AT1G67300.3 29.885 348 197 9 9 331 166 491 2.28e-35 134
Msa0240660 AT1G05030.2 30.240 334 214 8 7 329 140 465 3.30e-35 134
Msa0240660 AT1G05030.1 30.240 334 214 8 7 329 192 517 8.17e-35 133
Msa0240660 AT5G26340.1 27.893 337 226 7 7 329 155 488 9.98e-34 130
Msa0240660 AT1G50310.2 26.786 336 232 5 3 325 9 343 1.09e-33 127
Msa0240660 AT3G18830.1 27.714 350 220 9 8 326 148 495 2.51e-33 129
Msa0240660 AT1G50310.1 27.190 331 227 5 8 325 157 486 9.32e-33 127
Msa0240660 AT4G36670.1 29.972 357 205 10 8 327 129 477 1.38e-32 127
Msa0240660 AT1G67300.6 31.884 276 170 6 9 274 166 433 7.54e-32 124
Msa0240660 AT1G67300.7 31.884 276 170 6 9 274 166 433 7.54e-32 124
Msa0240660 AT3G19940.1 26.284 331 229 6 8 325 157 485 1.88e-31 124
Msa0240660 AT4G02050.2 27.576 330 226 6 7 325 157 484 6.24e-31 122
Msa0240660 AT4G02050.1 27.576 330 226 6 7 325 157 484 6.24e-31 122
Msa0240660 AT1G79820.2 28.190 337 215 6 9 331 169 492 6.30e-31 122
Msa0240660 AT1G79820.1 28.190 337 215 6 9 331 169 492 6.30e-31 122
Msa0240660 AT1G11260.1 28.198 344 210 8 7 325 154 485 1.60e-30 121
Msa0240660 AT1G67300.4 32.210 267 163 6 9 265 166 424 1.71e-30 120
Msa0240660 AT1G67300.5 32.210 267 163 6 9 265 166 424 1.71e-30 120
Msa0240660 AT3G19930.1 27.545 334 226 5 7 326 153 484 9.08e-30 119
Msa0240660 AT3G19930.2 27.545 334 226 5 7 326 153 484 9.08e-30 119
Msa0240660 AT4G21480.1 29.706 340 210 9 7 326 154 484 2.32e-29 117
Msa0240660 AT1G34580.2 30.030 333 218 8 8 325 105 437 1.05e-28 115
Msa0240660 AT2G18480.1 27.841 352 216 9 8 326 134 480 1.34e-28 115
Msa0240660 AT1G34580.1 30.030 333 218 8 8 325 155 487 1.79e-28 115
Msa0240660 AT5G26250.1 27.586 348 211 9 7 329 152 483 2.15e-28 115
Msa0240660 AT5G23270.1 26.946 334 226 7 7 325 156 486 2.19e-28 115
Msa0240660 AT3G05960.1 29.598 348 204 10 7 329 151 482 4.69e-28 114
Msa0240660 AT1G07340.1 30.178 338 208 10 7 325 153 481 6.07e-28 114
Msa0240660 AT1G79820.4 29.242 277 174 4 9 274 169 434 3.23e-27 111
Msa0240660 AT1G30220.1 30.165 242 153 7 8 234 143 383 6.20e-26 108
Msa0240660 AT1G30220.1 37.864 103 55 2 229 326 455 553 2.37e-14 74.3
Msa0240660 AT5G17010.2 27.536 345 159 11 4 327 163 437 1.17e-25 107
Msa0240660 AT1G77210.3 25.982 331 229 7 7 324 8 335 7.30e-24 100
Msa0240660 AT1G77210.2 26.126 333 228 7 7 325 157 485 3.92e-23 100
Msa0240660 AT1G77210.1 26.126 333 228 7 7 325 157 485 3.92e-23 100
Msa0240660 AT5G61520.2 27.616 344 208 13 7 325 112 439 5.33e-21 93.6
Msa0240660 AT5G61520.1 27.616 344 208 13 7 325 160 487 6.84e-21 93.6
Msa0240660 AT3G51490.2 32.057 209 123 5 130 323 510 714 2.66e-18 86.3
Msa0240660 AT3G51490.2 40.196 102 53 4 7 101 117 217 3.66e-13 70.9
Msa0240660 AT4G16480.2 27.876 226 141 5 8 214 142 364 2.70e-18 86.3
Msa0240660 AT4G16480.2 37.374 99 61 1 229 326 459 557 2.25e-14 74.3
Msa0240660 AT4G16480.3 27.876 226 141 5 8 214 142 364 2.70e-18 86.3
Msa0240660 AT4G16480.3 37.374 99 61 1 229 326 459 557 2.25e-14 74.3
Msa0240660 AT4G16480.1 27.876 226 141 5 8 214 142 364 2.70e-18 86.3
Msa0240660 AT4G16480.1 37.374 99 61 1 229 326 459 557 2.25e-14 74.3
Msa0240660 AT3G51490.3 28.627 255 154 6 84 323 423 664 3.16e-18 85.9
Msa0240660 AT3G51490.3 40.196 102 53 4 7 101 67 167 3.65e-13 70.9
Msa0240660 AT1G20840.2 31.163 215 131 3 123 323 502 713 5.03e-18 85.5
Msa0240660 AT1G20840.2 30.935 139 76 4 7 126 115 252 1.38e-13 72.0
Msa0240660 AT1G20840.1 31.163 215 131 3 123 323 502 713 5.03e-18 85.5
Msa0240660 AT1G20840.1 30.935 139 76 4 7 126 115 252 1.38e-13 72.0
Msa0240660 AT2G35740.1 25.561 223 150 5 8 214 141 363 6.49e-18 85.1
Msa0240660 AT2G35740.1 41.414 99 57 1 229 326 458 556 4.09e-15 76.6
Msa0240660 AT4G35300.9 31.019 216 132 5 122 323 498 710 1.62e-17 84.0
Msa0240660 AT4G35300.2 31.019 216 132 5 122 323 498 710 1.62e-17 84.0
Msa0240660 AT4G35300.3 31.019 216 132 5 122 323 498 710 1.62e-17 84.0
Msa0240660 AT4G35300.4 31.019 216 132 5 122 323 508 720 1.87e-17 84.0
Msa0240660 AT4G35300.8 31.019 216 132 5 122 323 508 720 1.87e-17 84.0
Msa0240660 AT4G35300.6 31.019 216 132 5 122 323 508 720 1.87e-17 84.0
Msa0240660 AT4G35300.11 31.019 216 132 5 122 323 508 720 1.87e-17 84.0
Msa0240660 AT4G35300.1 31.019 216 132 5 122 323 508 720 1.87e-17 84.0
Msa0240660 AT4G35300.10 31.019 216 132 5 122 323 508 720 1.87e-17 84.0
Msa0240660 AT4G35300.7 31.019 216 132 5 122 323 508 720 1.87e-17 84.0
Msa0240660 AT4G35300.5 31.019 216 132 5 122 323 311 523 1.94e-17 83.6
Msa0240660 AT3G51490.1 29.600 250 150 6 84 323 473 706 1.93e-16 80.9
Msa0240660 AT3G51490.1 40.196 102 53 4 7 101 117 217 3.61e-13 70.9
Msa0240660 AT1G79820.3 23.442 337 183 7 9 331 169 444 3.41e-13 70.5
Msa0240660 AT1G79820.5 23.145 337 184 7 9 331 107 382 6.24e-13 69.3

Find 104 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCACTGCTGTGTTGCTTC+TGG 0.130660 2_2:+16010389 Msa0240660:CDS
CTTGGTTTCAATTAGGTATC+TGG 0.196736 2_2:+16011589 Msa0240660:intron
CTTATGGTTTGCCAGCAATT+AGG 0.210158 2_2:+16011054 Msa0240660:CDS
GATATTTCCAGTCAATATTA+AGG 0.214954 2_2:+16012256 Msa0240660:intron
TTATGGTTTGCCAGCAATTA+GGG 0.246534 2_2:+16011055 Msa0240660:CDS
AGGGCACCTCGGAGTTCTTT+TGG 0.268637 2_2:-16010029 None:intergenic
GTGTAGTGTTTGGTGGAAAT+TGG 0.274589 2_2:+16012647 Msa0240660:three_prime_UTR
TTAGATGTGTTACATATATA+AGG 0.279239 2_2:+16009980 Msa0240660:exon
ACATCTAAATAACACTATAA+TGG 0.282972 2_2:-16009965 None:intergenic
CCCACTGCTGTGTTGCTTCT+GGG 0.289747 2_2:+16010390 Msa0240660:CDS
GCAACACAGCAGTGGGAATA+AGG 0.301338 2_2:-16010383 None:intergenic
GTCCCAGCACTTGCCGTAAC+TGG 0.304986 2_2:+16011771 Msa0240660:CDS
GCAAACTTCCTACGCGATAA+TGG 0.308259 2_2:-16012619 None:intergenic
GTATCAGTGTCATTCATAAT+TGG 0.311203 2_2:+16010197 Msa0240660:CDS
GGAAATGCATTATACTATTA+AGG 0.312683 2_2:-16012834 None:intergenic
AGGCCGGAAGCCACTACTTT+TGG 0.317735 2_2:+16011487 Msa0240660:CDS
TAAAAGCCTTGAACAATTAC+AGG 0.318980 2_2:+16012593 Msa0240660:CDS
CATCTAAATAACACTATAAT+GGG 0.344385 2_2:-16009964 None:intergenic
ACATGTGGTTTCATAAAGAA+TGG 0.363136 2_2:+16012884 Msa0240660:three_prime_UTR
TAATTGGAACAGTACTTTCA+TGG 0.363139 2_2:+16010213 Msa0240660:CDS
GTAGATTGGAGTAGGGCTTA+TGG 0.368425 2_2:+16011038 Msa0240660:intron
TTCAATTAGGTATCTGGATC+AGG 0.372298 2_2:+16011595 Msa0240660:intron
TGAAGAGGCAGAAGAAATTC+AGG 0.379612 2_2:+16010620 Msa0240660:CDS
ACTTGCCGTAACTGGCATAT+TGG 0.383471 2_2:+16011779 Msa0240660:CDS
TATAATATACGCTATCCTTC+AGG 0.395137 2_2:+16011330 Msa0240660:CDS
TTACCAAAAGTAGTGGCTTC+CGG 0.404414 2_2:-16011490 None:intergenic
ATACCTGATTTAAGGTAGTC+AGG 0.404425 2_2:-16010049 None:intergenic
CTCATGAGTTGGAGCTCCTA+TGG 0.410624 2_2:+16012350 Msa0240660:CDS
TTATTACTTACCAGCCATCT+AGG 0.415487 2_2:-16010435 None:intergenic
TGGAGGGCTTTAGCTATAAT+CGG 0.425528 2_2:+16010233 Msa0240660:CDS
TGCCCTGACTACCTTAAATC+AGG 0.427867 2_2:+16010046 Msa0240660:CDS
TGGCTGCCTGTAATTGTTCA+AGG 0.428537 2_2:-16012599 None:intergenic
ATGCCAGTTACGGCAAGTGC+TGG 0.435143 2_2:-16011774 None:intergenic
TCATTCCAGAGTCTCCTAGA+TGG 0.435503 2_2:+16010421 Msa0240660:CDS
CTTTCAACTTTCTCATGAGT+TGG 0.435734 2_2:+16012339 Msa0240660:CDS
TCTGGATCAGGATTGGTTGC+AGG 0.437259 2_2:+16011607 Msa0240660:CDS
GCATAGCAACATTAGTGAAC+TGG 0.437404 2_2:+16012291 Msa0240660:CDS
CTTCATGAGTAGATTGGAGT+AGG 0.442194 2_2:+16011030 Msa0240660:intron
ATATTTCCAGTCAATATTAA+GGG 0.442648 2_2:+16012257 Msa0240660:CDS
TGTAACAAATCCAGCACCTT+CGG 0.447034 2_2:-16010793 None:intergenic
GTCAATATTAAGGGGCAGGC+AGG 0.454849 2_2:+16012266 Msa0240660:CDS
ACAAATTATAATCAAAATCA+TGG 0.458705 2_2:-16012764 None:intergenic
TGAAACCACATGTTAAATCA+AGG 0.459071 2_2:-16012874 None:intergenic
ATAGGATTTCCTTCTGCGAC+GGG 0.459192 2_2:+16011304 Msa0240660:intron
GCAACATTAGTGAACTGGTT+TGG 0.459624 2_2:+16012296 Msa0240660:CDS
TCCGGCCTGCTCTATCTATG+AGG 0.461836 2_2:-16011472 None:intergenic
ATCAAGGAGGGAATTCGTAG+GGG 0.462019 2_2:-16012858 None:intergenic
CATGAGAAAGTTGAAAGTAT+AGG 0.464787 2_2:-16012333 None:intergenic
TTTGCGATTTGTGTAGTGTT+TGG 0.466010 2_2:+16012637 Msa0240660:three_prime_UTR
TCCAGTCAATATTAAGGGGC+AGG 0.473585 2_2:+16012262 Msa0240660:CDS
GCTCGCAAAACCGAAGGTGC+TGG 0.477284 2_2:+16010783 Msa0240660:CDS
GCCTGCCCCTTAATATTGAC+TGG 0.493013 2_2:-16012263 None:intergenic
GCGATTTGTGTAGTGTTTGG+TGG 0.502161 2_2:+16012640 Msa0240660:three_prime_UTR
TCAAGGAGGGAATTCGTAGG+GGG 0.513902 2_2:-16012857 None:intergenic
CCATACCAATATGCCAGTTA+CGG 0.517135 2_2:-16011784 None:intergenic
TTAGGTATCTGGATCAGGAT+TGG 0.517795 2_2:+16011600 Msa0240660:intron
TCCCTCCTTGATTTAACATG+TGG 0.518704 2_2:+16012869 Msa0240660:three_prime_UTR
TCCAGAGTCTCCTAGATGGC+TGG 0.523060 2_2:+16010425 Msa0240660:CDS
CAGATTGTGATCACAGGTGT+TGG 0.523824 2_2:+16011443 Msa0240660:intron
TAGGAATGGGAGCAATTCCA+TGG 0.529632 2_2:+16011926 Msa0240660:CDS
TGCCAGTTACGGCAAGTGCT+GGG 0.531195 2_2:-16011773 None:intergenic
TGGAACAGTACTTTCATGGA+GGG 0.532101 2_2:+16010217 Msa0240660:CDS
TTCATGAGTAGATTGGAGTA+GGG 0.538540 2_2:+16011031 Msa0240660:intron
ACCAGCCATCTAGGAGACTC+TGG 0.543206 2_2:-16010426 None:intergenic
CATAGGATTTCCTTCTGCGA+CGG 0.543429 2_2:+16011303 Msa0240660:intron
TGCTGATATTAGGTCTACAT+AGG 0.553729 2_2:+16011892 Msa0240660:intron
TTTGAATTTACCAAAAGTAG+TGG 0.554019 2_2:-16011497 None:intergenic
CCGGCCTGCTCTATCTATGA+GGG 0.555047 2_2:-16011471 None:intergenic
TAGTGAACTGGTTTGGTGCA+TGG 0.558886 2_2:+16012303 Msa0240660:CDS
ACCTCGGACATCACAACCCA+TGG 0.560460 2_2:-16011943 None:intergenic
TACCTGATTTAAGGTAGTCA+GGG 0.563340 2_2:-16010048 None:intergenic
CAAGGAGGGAATTCGTAGGG+GGG 0.563710 2_2:-16012856 None:intergenic
ATTATACTCCCCGTCGCAGA+AGG 0.566503 2_2:-16011313 None:intergenic
ACAGGTTCATGATGTGGCTG+TGG 0.570506 2_2:+16011743 Msa0240660:intron
AGCAGTTGCATTCTATCTCA+AGG 0.573615 2_2:+16011642 Msa0240660:CDS
AGATGCTGATATATCTGAAG+AGG 0.576120 2_2:+16010605 Msa0240660:CDS
ACCCAGAAGCAACACAGCAG+TGG 0.576369 2_2:-16010391 None:intergenic
CCCAGAAGCAACACAGCAGT+GGG 0.578353 2_2:-16010390 None:intergenic
AATCAAGGAGGGAATTCGTA+GGG 0.578579 2_2:-16012859 None:intergenic
GCAATTTCTGCTACGAACAC+AGG 0.587269 2_2:-16010005 None:intergenic
AAGGAGGGAATTCGTAGGGG+GGG 0.587854 2_2:-16012855 None:intergenic
TATTTCCAGTCAATATTAAG+GGG 0.587860 2_2:+16012258 Msa0240660:CDS
GCAGCCCTCATAGATAGAGC+AGG 0.590573 2_2:+16011467 Msa0240660:CDS
AAATCAAGGAGGGAATTCGT+AGG 0.594919 2_2:-16012860 None:intergenic
GGTGGAAATTGGAACAACAA+AGG 0.604202 2_2:+16012658 Msa0240660:three_prime_UTR
ATGGTTTGCCAGCAATTAGG+GGG 0.608563 2_2:+16011057 Msa0240660:CDS
CAGGTTCATGATGTGGCTGT+GGG 0.612693 2_2:+16011744 Msa0240660:intron
ACCACATGTTAAATCAAGGA+GGG 0.613521 2_2:-16012870 None:intergenic
CCCTCATAGATAGAGCAGGC+CGG 0.622479 2_2:+16011471 Msa0240660:CDS
TAATGAATGCAGGCAAAGCG+AGG 0.623838 2_2:+16010537 Msa0240660:intron
ACAGGCAGCCATTATCGCGT+AGG 0.629676 2_2:+16012611 Msa0240660:CDS
TATGGTTTGCCAGCAATTAG+GGG 0.634878 2_2:+16011056 Msa0240660:CDS
AGAACAGCTCGCAAAACCGA+AGG 0.635960 2_2:+16010777 Msa0240660:CDS
GCAGCATTACAAATACTTCG+CGG 0.650248 2_2:+16010579 Msa0240660:CDS
GTAGTAGTCCCAGAAACCAA+AGG 0.657750 2_2:+16012570 Msa0240660:CDS
TTGGAACAGTACTTTCATGG+AGG 0.660408 2_2:+16010216 Msa0240660:CDS
TAGGATTTCCTTCTGCGACG+GGG 0.661364 2_2:+16011305 Msa0240660:intron
AACCACATGTTAAATCAAGG+AGG 0.666340 2_2:-16012871 None:intergenic
TTAAGGTAGTCAGGGCACCT+CGG 0.669152 2_2:-16010040 None:intergenic
AGGAATGGGAGCAATTCCAT+GGG 0.675398 2_2:+16011927 Msa0240660:CDS
TGAGTAACAGGTTCATGATG+TGG 0.685768 2_2:+16011737 Msa0240660:intron
GATTGCAGCGTAAAGAACGA+AGG 0.710685 2_2:-16012520 None:intergenic
TCCATGGGTTGTGATGTCCG+AGG 0.731376 2_2:+16011942 Msa0240660:CDS
ATTGCGCCAAAAGAACTCCG+AGG 0.763517 2_2:+16010023 Msa0240660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATTTTACATAAATATT+AGG - chr2_2:16011708-16011727 None:intergenic 10.0%
!!! ATTTTGATTATAATTTGTAT+TGG + chr2_2:16012769-16012788 Msa0240660:three_prime_UTR 10.0%
!!! TTTATTTTGTTTTGGTTTAT+TGG + chr2_2:16011269-16011288 Msa0240660:intron 15.0%
!! ATTAACCAATAATTAATTCT+TGG + chr2_2:16011366-16011385 Msa0240660:intron 15.0%
!!! ATTTTCCAAGAATTAATTAT+TGG - chr2_2:16011374-16011393 None:intergenic 15.0%
!!! TACTTTTATTTATGATTTTC+AGG + chr2_2:16012495-16012514 Msa0240660:intron 15.0%
!! ACAAATTATAATCAAAATCA+TGG - chr2_2:16012767-16012786 None:intergenic 15.0%
!! CATCTAAATAACACTATAAT+GGG - chr2_2:16009967-16009986 None:intergenic 20.0%
!! ACATCTAAATAACACTATAA+TGG - chr2_2:16009968-16009987 None:intergenic 20.0%
!! TTAGATGTGTTACATATATA+AGG + chr2_2:16009980-16009999 Msa0240660:exon 20.0%
!! AGAAAAATATACCTGATTTA+AGG - chr2_2:16010060-16010079 None:intergenic 20.0%
!!! CTCAGATTTTTATTTTGTTT+TGG + chr2_2:16011261-16011280 Msa0240660:intron 20.0%
!! ATTTAAAAATAAGAACCTGA+AGG - chr2_2:16011348-16011367 None:intergenic 20.0%
!!! ATACTCTTATTGTTATTTCT+TGG + chr2_2:16011571-16011590 Msa0240660:intron 20.0%
!! TTGATATTAAAAACTGAAAG+TGG - chr2_2:16011986-16012005 None:intergenic 20.0%
!! ATATTTCCAGTCAATATTAA+GGG + chr2_2:16012257-16012276 Msa0240660:CDS 20.0%
!! AATGTATTAGTATTTACCAT+AGG - chr2_2:16012369-16012388 None:intergenic 20.0%
!! TGATTATCGTATAATAATTC+TGG - chr2_2:16012434-16012453 None:intergenic 20.0%
! CAGCTTAATTGCATTATATT+TGG - chr2_2:16010717-16010736 None:intergenic 25.0%
! CAAATATAATGCAATTAAGC+TGG + chr2_2:16010715-16010734 Msa0240660:intron 25.0%
! AATAGAACAAATATGAGAAG+TGG - chr2_2:16010961-16010980 None:intergenic 25.0%
!! AGGAAGATGAAAATTTTGAA+TGG - chr2_2:16011004-16011023 None:intergenic 25.0%
! ATCTACTCATGAAGAAAAAT+AGG - chr2_2:16011024-16011043 None:intergenic 25.0%
!! ATTTTTCTTCATGAGTAGAT+TGG + chr2_2:16011024-16011043 Msa0240660:intron 25.0%
!!! TATTGGTGTATTTTTGTCAT+AGG + chr2_2:16011286-16011305 Msa0240660:intron 25.0%
! AATAAAAATCATGACTGAGT+TGG - chr2_2:16011419-16011438 None:intergenic 25.0%
! TTTGAATTTACCAAAAGTAG+TGG - chr2_2:16011500-16011519 None:intergenic 25.0%
!!! GTTATTTCTTGGTTTCAATT+AGG + chr2_2:16011582-16011601 Msa0240660:intron 25.0%
!! TTTTTCTTTTTCTTTGACCT+GGG + chr2_2:16012116-16012135 Msa0240660:intron 25.0%
! GATATTTCCAGTCAATATTA+AGG + chr2_2:16012256-16012275 Msa0240660:intron 25.0%
! TATTTCCAGTCAATATTAAG+GGG + chr2_2:16012258-16012277 Msa0240660:CDS 25.0%
!! ATTGGTTTCTTGAACTAAAT+GGG - chr2_2:16012461-16012480 None:intergenic 25.0%
!!! TATTGGTTTCTTGAACTAAA+TGG - chr2_2:16012462-16012481 None:intergenic 25.0%
! GGAAATGCATTATACTATTA+AGG - chr2_2:16012837-16012856 None:intergenic 25.0%
! GTATCAGTGTCATTCATAAT+TGG + chr2_2:16010197-16010216 Msa0240660:CDS 30.0%
TAATTGGAACAGTACTTTCA+TGG + chr2_2:16010213-16010232 Msa0240660:CDS 30.0%
TCATATGATCTTCTTCTTAG+TGG - chr2_2:16010289-16010308 None:intergenic 30.0%
ATTTAGATGAAAACATGCAG+TGG + chr2_2:16010474-16010493 Msa0240660:intron 30.0%
! TTCATTATTTGGTTGGTACT+TGG - chr2_2:16010524-16010543 None:intergenic 30.0%
ACTAGTTATATAATCCTGTG+TGG - chr2_2:16010755-16010774 None:intergenic 30.0%
AAATGAACTGATATTCAGAG+TGG - chr2_2:16010860-16010879 None:intergenic 30.0%
! ATTTTCTTCAAGAATGTGTG+TGG + chr2_2:16010876-16010895 Msa0240660:intron 30.0%
AGAGGTGGAAAATAAAGTAT+TGG + chr2_2:16010914-16010933 Msa0240660:intron 30.0%
!! AGTAGTATTTTTGATCTAGC+AGG + chr2_2:16011105-16011124 Msa0240660:CDS 30.0%
TATAATATACGCTATCCTTC+AGG + chr2_2:16011330-16011349 Msa0240660:CDS 30.0%
!! TAAGAGTATCATACATGAAG+CGG - chr2_2:16011560-16011579 None:intergenic 30.0%
AAGCTGTAAAGTTCTTAGTT+GGG - chr2_2:16011673-16011692 None:intergenic 30.0%
! CTCTTTCATTTGCTGATATT+AGG + chr2_2:16011882-16011901 Msa0240660:intron 30.0%
! TACATAGGATCGTTTTCAAT+AGG + chr2_2:16011907-16011926 Msa0240660:CDS 30.0%
TAAAAACTGAAAGTGGAGAA+AGG - chr2_2:16011979-16011998 None:intergenic 30.0%
!!! TTAAGTGCAACTCTTGTTTT+TGG - chr2_2:16012063-16012082 None:intergenic 30.0%
AAAAGAAAAACAGTTCCAGT+CGG - chr2_2:16012106-16012125 None:intergenic 30.0%
! GTTTTTCTTTTTCTTTGACC+TGG + chr2_2:16012115-16012134 Msa0240660:intron 30.0%
! TTTTCTTTTTCTTTGACCTG+GGG + chr2_2:16012117-16012136 Msa0240660:intron 30.0%
! CATGAGAAAGTTGAAAGTAT+AGG - chr2_2:16012336-16012355 None:intergenic 30.0%
AGTAAACTTGCATGTTCTAT+TGG - chr2_2:16012479-16012498 None:intergenic 30.0%
TAAAAGCCTTGAACAATTAC+AGG + chr2_2:16012593-16012612 Msa0240660:CDS 30.0%
CCAACAGACTATAAAAAACA+AGG - chr2_2:16012715-16012734 None:intergenic 30.0%
!!! CCTTGTTTTTTATAGTCTGT+TGG + chr2_2:16012712-16012731 Msa0240660:three_prime_UTR 30.0%
TGAAACCACATGTTAAATCA+AGG - chr2_2:16012877-16012896 None:intergenic 30.0%
ACATGTGGTTTCATAAAGAA+TGG + chr2_2:16012884-16012903 Msa0240660:three_prime_UTR 30.0%
! TACCTGATTTAAGGTAGTCA+GGG - chr2_2:16010051-16010070 None:intergenic 35.0%
! ATACCTGATTTAAGGTAGTC+AGG - chr2_2:16010052-16010071 None:intergenic 35.0%
AAATGAGTGTTTGCAATTGC+AGG + chr2_2:16010360-16010379 Msa0240660:intron 35.0%
TTATTACTTACCAGCCATCT+AGG - chr2_2:16010438-16010457 None:intergenic 35.0%
ACCAACCAAATAATGAATGC+AGG + chr2_2:16010527-16010546 Msa0240660:intron 35.0%
CTTTGCCTGCATTCATTATT+TGG - chr2_2:16010535-16010554 None:intergenic 35.0%
AGATGCTGATATATCTGAAG+AGG + chr2_2:16010605-16010624 Msa0240660:CDS 35.0%
GTCTTTATTATTGTGCCTGA+AGG - chr2_2:16010688-16010707 None:intergenic 35.0%
TTCATGAGTAGATTGGAGTA+GGG + chr2_2:16011031-16011050 Msa0240660:intron 35.0%
! TTATGGTTTGCCAGCAATTA+GGG + chr2_2:16011055-16011074 Msa0240660:CDS 35.0%
! AAGCATGATGGTGTTAAACT+TGG - chr2_2:16011161-16011180 None:intergenic 35.0%
! TGATATGCAAGAAAGCATGA+TGG - chr2_2:16011173-16011192 None:intergenic 35.0%
! TTTTCACAGATTGTGATCAC+AGG + chr2_2:16011437-16011456 Msa0240660:intron 35.0%
CTTGGTTTCAATTAGGTATC+TGG + chr2_2:16011589-16011608 Msa0240660:intron 35.0%
TTCAATTAGGTATCTGGATC+AGG + chr2_2:16011595-16011614 Msa0240660:intron 35.0%
GAAGCTGTAAAGTTCTTAGT+TGG - chr2_2:16011674-16011693 None:intergenic 35.0%
GATATCCTTATGTGAGTAAC+AGG + chr2_2:16011725-16011744 Msa0240660:intron 35.0%
ATGAACCTGTTACTCACATA+AGG - chr2_2:16011733-16011752 None:intergenic 35.0%
AATGAAAGAGCAGTGTTACA+TGG - chr2_2:16011872-16011891 None:intergenic 35.0%
TGCTGATATTAGGTCTACAT+AGG + chr2_2:16011892-16011911 Msa0240660:intron 35.0%
! AGGATCGTTTTCAATAGGAA+TGG + chr2_2:16011912-16011931 Msa0240660:CDS 35.0%
! GGATCGTTTTCAATAGGAAT+GGG + chr2_2:16011913-16011932 Msa0240660:CDS 35.0%
AAAGAAAAACAGTTCCAGTC+GGG - chr2_2:16012105-16012124 None:intergenic 35.0%
TAAATCAACTTCGAATTCGC+CGG + chr2_2:16012167-16012186 Msa0240660:intron 35.0%
! AAGAGGACACATTTTGTAAC+CGG - chr2_2:16012189-16012208 None:intergenic 35.0%
GTGTCCTCTTAGTAAAAAGA+CGG + chr2_2:16012199-16012218 Msa0240660:intron 35.0%
! TATGCCGTCTTTTTACTAAG+AGG - chr2_2:16012206-16012225 None:intergenic 35.0%
CTGGAAATATCTGCAACATA+AGG - chr2_2:16012247-16012266 None:intergenic 35.0%
CTTTCAACTTTCTCATGAGT+TGG + chr2_2:16012339-16012358 Msa0240660:CDS 35.0%
! TTGTTCAAGGCTTTTACCTT+TGG - chr2_2:16012589-16012608 None:intergenic 35.0%
TTTGCGATTTGTGTAGTGTT+TGG + chr2_2:16012637-16012656 Msa0240660:three_prime_UTR 35.0%
ACCACATGTTAAATCAAGGA+GGG - chr2_2:16012873-16012892 None:intergenic 35.0%
AACCACATGTTAAATCAAGG+AGG - chr2_2:16012874-16012893 None:intergenic 35.0%
TTGGAACAGTACTTTCATGG+AGG + chr2_2:16010216-16010235 Msa0240660:CDS 40.0%
TGGAACAGTACTTTCATGGA+GGG + chr2_2:16010217-16010236 Msa0240660:CDS 40.0%
! TGGAGGGCTTTAGCTATAAT+CGG + chr2_2:16010233-16010252 Msa0240660:CDS 40.0%
GCCTGCATTCATTATTTGGT+TGG - chr2_2:16010531-16010550 None:intergenic 40.0%
! AGGACGCACAAAAGATTTTG+TGG + chr2_2:16010557-16010576 Msa0240660:CDS 40.0%
GCAGCATTACAAATACTTCG+CGG + chr2_2:16010579-16010598 Msa0240660:CDS 40.0%
TGAAGAGGCAGAAGAAATTC+AGG + chr2_2:16010620-16010639 Msa0240660:CDS 40.0%
AGGTAACTGTGTGTTAGTGT+TGG + chr2_2:16010640-16010659 Msa0240660:intron 40.0%
TATTAAGTGACCTTGCCTTC+AGG + chr2_2:16010670-16010689 Msa0240660:intron 40.0%
TATTATTGTGCCTGAAGGCA+AGG - chr2_2:16010683-16010702 None:intergenic 40.0%
TGTAACAAATCCAGCACCTT+CGG - chr2_2:16010796-16010815 None:intergenic 40.0%
TTCTTCAAGAATGTGTGTGG+TGG + chr2_2:16010879-16010898 Msa0240660:intron 40.0%
CTTCATGAGTAGATTGGAGT+AGG + chr2_2:16011030-16011049 Msa0240660:intron 40.0%
! CTTATGGTTTGCCAGCAATT+AGG + chr2_2:16011054-16011073 Msa0240660:CDS 40.0%
! TATGGTTTGCCAGCAATTAG+GGG + chr2_2:16011056-16011075 Msa0240660:CDS 40.0%
TTACCAAAAGTAGTGGCTTC+CGG - chr2_2:16011493-16011512 None:intergenic 40.0%
TTAGGTATCTGGATCAGGAT+TGG + chr2_2:16011600-16011619 Msa0240660:intron 40.0%
AGCAGTTGCATTCTATCTCA+AGG + chr2_2:16011642-16011661 Msa0240660:CDS 40.0%
TGAGTAACAGGTTCATGATG+TGG + chr2_2:16011737-16011756 Msa0240660:intron 40.0%
CCATACCAATATGCCAGTTA+CGG - chr2_2:16011787-16011806 None:intergenic 40.0%
ACTGAAAGTGGAGAAAGGAT+GGG - chr2_2:16011974-16011993 None:intergenic 40.0%
AACTGAAAGTGGAGAAAGGA+TGG - chr2_2:16011975-16011994 None:intergenic 40.0%
AAGAAAAACAGTTCCAGTCG+GGG - chr2_2:16012104-16012123 None:intergenic 40.0%
GCATAGCAACATTAGTGAAC+TGG + chr2_2:16012291-16012310 Msa0240660:CDS 40.0%
GCAACATTAGTGAACTGGTT+TGG + chr2_2:16012296-16012315 Msa0240660:CDS 40.0%
!! GGCTTTTACCTTTGGTTTCT+GGG - chr2_2:16012581-16012600 None:intergenic 40.0%
!! AGGCTTTTACCTTTGGTTTC+TGG - chr2_2:16012582-16012601 None:intergenic 40.0%
! GTGTAGTGTTTGGTGGAAAT+TGG + chr2_2:16012647-16012666 Msa0240660:three_prime_UTR 40.0%
GGTGGAAATTGGAACAACAA+AGG + chr2_2:16012658-16012677 Msa0240660:three_prime_UTR 40.0%
AATCAAGGAGGGAATTCGTA+GGG - chr2_2:16012862-16012881 None:intergenic 40.0%
AAATCAAGGAGGGAATTCGT+AGG - chr2_2:16012863-16012882 None:intergenic 40.0%
TCCCTCCTTGATTTAACATG+TGG + chr2_2:16012869-16012888 Msa0240660:three_prime_UTR 40.0%
GCAATTTCTGCTACGAACAC+AGG - chr2_2:16010008-16010027 None:intergenic 45.0%
TGCCCTGACTACCTTAAATC+AGG + chr2_2:16010046-16010065 Msa0240660:CDS 45.0%
TCATTCCAGAGTCTCCTAGA+TGG + chr2_2:16010421-16010440 Msa0240660:CDS 45.0%
TAATGAATGCAGGCAAAGCG+AGG + chr2_2:16010537-16010556 Msa0240660:intron 45.0%
!! AATGTGTGTGGTGGACTACT+AGG + chr2_2:16010888-16010907 Msa0240660:intron 45.0%
GTAGATTGGAGTAGGGCTTA+TGG + chr2_2:16011038-16011057 Msa0240660:intron 45.0%
! ATGGTTTGCCAGCAATTAGG+GGG + chr2_2:16011057-16011076 Msa0240660:CDS 45.0%
!! CATTGATTCCCCCTAATTGC+TGG - chr2_2:16011068-16011087 None:intergenic 45.0%
CAGCAATTAGGGGGAATCAA+TGG + chr2_2:16011066-16011085 Msa0240660:CDS 45.0%
CATAGGATTTCCTTCTGCGA+CGG + chr2_2:16011303-16011322 Msa0240660:intron 45.0%
ATAGGATTTCCTTCTGCGAC+GGG + chr2_2:16011304-16011323 Msa0240660:intron 45.0%
! CATGACTGAGTTGGATTCGA+GGG - chr2_2:16011410-16011429 None:intergenic 45.0%
! TCATGACTGAGTTGGATTCG+AGG - chr2_2:16011411-16011430 None:intergenic 45.0%
CAGATTGTGATCACAGGTGT+TGG + chr2_2:16011443-16011462 Msa0240660:intron 45.0%
ACTTGCCGTAACTGGCATAT+TGG + chr2_2:16011779-16011798 Msa0240660:CDS 45.0%
CCGTAACTGGCATATTGGTA+TGG + chr2_2:16011784-16011803 Msa0240660:intron 45.0%
TAGGAATGGGAGCAATTCCA+TGG + chr2_2:16011926-16011945 Msa0240660:CDS 45.0%
AGGAATGGGAGCAATTCCAT+GGG + chr2_2:16011927-16011946 Msa0240660:CDS 45.0%
CTGAAAGTGGAGAAAGGATG+GGG - chr2_2:16011973-16011992 None:intergenic 45.0%
! TCTTTTTCTTTGACCTGGGG+AGG + chr2_2:16012120-16012139 Msa0240660:intron 45.0%
TGCATAAATAGATCCTCCCC+AGG - chr2_2:16012136-16012155 None:intergenic 45.0%
TCCAGTCAATATTAAGGGGC+AGG + chr2_2:16012262-16012281 Msa0240660:CDS 45.0%
!! TAGTGAACTGGTTTGGTGCA+TGG + chr2_2:16012303-16012322 Msa0240660:CDS 45.0%
GATTGCAGCGTAAAGAACGA+AGG - chr2_2:16012523-16012542 None:intergenic 45.0%
GTAGTAGTCCCAGAAACCAA+AGG + chr2_2:16012570-16012589 Msa0240660:CDS 45.0%
TGGCTGCCTGTAATTGTTCA+AGG - chr2_2:16012602-16012621 None:intergenic 45.0%
GCAAACTTCCTACGCGATAA+TGG - chr2_2:16012622-16012641 None:intergenic 45.0%
GCGATTTGTGTAGTGTTTGG+TGG + chr2_2:16012640-16012659 Msa0240660:three_prime_UTR 45.0%
ATCAAGGAGGGAATTCGTAG+GGG - chr2_2:16012861-16012880 None:intergenic 45.0%
ATTGCGCCAAAAGAACTCCG+AGG + chr2_2:16010023-16010042 Msa0240660:CDS 50.0%
! TTAAGGTAGTCAGGGCACCT+CGG - chr2_2:16010043-16010062 None:intergenic 50.0%
GCAACACAGCAGTGGGAATA+AGG - chr2_2:16010386-16010405 None:intergenic 50.0%
TGTATCTGTCACTGCCACAC+AGG + chr2_2:16010738-16010757 Msa0240660:intron 50.0%
AGAACAGCTCGCAAAACCGA+AGG + chr2_2:16010777-16010796 Msa0240660:CDS 50.0%
!! TGGTGGACTACTAGGTTGAG+AGG + chr2_2:16010896-16010915 Msa0240660:intron 50.0%
! TGGACTACTAGGTTGAGAGG+TGG + chr2_2:16010899-16010918 Msa0240660:intron 50.0%
TAGGATTTCCTTCTGCGACG+GGG + chr2_2:16011305-16011324 Msa0240660:intron 50.0%
ATTATACTCCCCGTCGCAGA+AGG - chr2_2:16011316-16011335 None:intergenic 50.0%
!! TCTGGATCAGGATTGGTTGC+AGG + chr2_2:16011607-16011626 Msa0240660:CDS 50.0%
ACAGGTTCATGATGTGGCTG+TGG + chr2_2:16011743-16011762 Msa0240660:intron 50.0%
CAGGTTCATGATGTGGCTGT+GGG + chr2_2:16011744-16011763 Msa0240660:intron 50.0%
!! GAAAGGATGGGGAAGTACCT+CGG - chr2_2:16011962-16011981 None:intergenic 50.0%
AGCAAATGTTGATCCCCGAC+TGG + chr2_2:16012088-16012107 Msa0240660:intron 50.0%
GCCTGCCCCTTAATATTGAC+TGG - chr2_2:16012266-16012285 None:intergenic 50.0%
GTCAATATTAAGGGGCAGGC+AGG + chr2_2:16012266-16012285 Msa0240660:CDS 50.0%
! CTCATGAGTTGGAGCTCCTA+TGG + chr2_2:16012350-16012369 Msa0240660:CDS 50.0%
TCAAGGAGGGAATTCGTAGG+GGG - chr2_2:16012860-16012879 None:intergenic 50.0%
!! AGGGCACCTCGGAGTTCTTT+TGG - chr2_2:16010032-16010051 None:intergenic 55.0%
!! TCCCACTGCTGTGTTGCTTC+TGG + chr2_2:16010389-16010408 Msa0240660:CDS 55.0%
CCCAGAAGCAACACAGCAGT+GGG - chr2_2:16010393-16010412 None:intergenic 55.0%
!! CCCACTGCTGTGTTGCTTCT+GGG + chr2_2:16010390-16010409 Msa0240660:CDS 55.0%
ACCCAGAAGCAACACAGCAG+TGG - chr2_2:16010394-16010413 None:intergenic 55.0%
TCCAGAGTCTCCTAGATGGC+TGG + chr2_2:16010425-16010444 Msa0240660:CDS 55.0%
ACCAGCCATCTAGGAGACTC+TGG - chr2_2:16010429-16010448 None:intergenic 55.0%
GCAGCCCTCATAGATAGAGC+AGG + chr2_2:16011467-16011486 Msa0240660:CDS 55.0%
CCGGCCTGCTCTATCTATGA+GGG - chr2_2:16011474-16011493 None:intergenic 55.0%
CCCTCATAGATAGAGCAGGC+CGG + chr2_2:16011471-16011490 Msa0240660:CDS 55.0%
TCCGGCCTGCTCTATCTATG+AGG - chr2_2:16011475-16011494 None:intergenic 55.0%
! AGGCCGGAAGCCACTACTTT+TGG + chr2_2:16011487-16011506 Msa0240660:CDS 55.0%
TGCCAGTTACGGCAAGTGCT+GGG - chr2_2:16011776-16011795 None:intergenic 55.0%
ATGCCAGTTACGGCAAGTGC+TGG - chr2_2:16011777-16011796 None:intergenic 55.0%
! TCCATGGGTTGTGATGTCCG+AGG + chr2_2:16011942-16011961 Msa0240660:CDS 55.0%
ACCTCGGACATCACAACCCA+TGG - chr2_2:16011946-16011965 None:intergenic 55.0%
ACAGGCAGCCATTATCGCGT+AGG + chr2_2:16012611-16012630 Msa0240660:CDS 55.0%
AAGGAGGGAATTCGTAGGGG+GGG - chr2_2:16012858-16012877 None:intergenic 55.0%
CAAGGAGGGAATTCGTAGGG+GGG - chr2_2:16012859-16012878 None:intergenic 55.0%
! GCTCGCAAAACCGAAGGTGC+TGG + chr2_2:16010783-16010802 Msa0240660:CDS 60.0%
GTCCCAGCACTTGCCGTAAC+TGG + chr2_2:16011771-16011790 Msa0240660:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 16009958 16012916 16009958 ID=Msa0240660;Name=Msa0240660
chr2_2 mRNA 16009958 16012916 16009958 ID=Msa0240660-mRNA-1;Parent=Msa0240660;Name=Msa0240660-mRNA-1;_AED=0.14;_eAED=0.14;_QI=26|1|1|1|1|1|13|284|331
chr2_2 exon 16009958 16010067 16009958 ID=Msa0240660-mRNA-1:exon:6534;Parent=Msa0240660-mRNA-1
chr2_2 exon 16010179 16010254 16010179 ID=Msa0240660-mRNA-1:exon:6535;Parent=Msa0240660-mRNA-1
chr2_2 exon 16010382 16010446 16010382 ID=Msa0240660-mRNA-1:exon:6536;Parent=Msa0240660-mRNA-1
chr2_2 exon 16010549 16010641 16010549 ID=Msa0240660-mRNA-1:exon:6537;Parent=Msa0240660-mRNA-1
chr2_2 exon 16010760 16010840 16010760 ID=Msa0240660-mRNA-1:exon:6538;Parent=Msa0240660-mRNA-1
chr2_2 exon 16011042 16011126 16011042 ID=Msa0240660-mRNA-1:exon:6539;Parent=Msa0240660-mRNA-1
chr2_2 exon 16011308 16011351 16011308 ID=Msa0240660-mRNA-1:exon:6540;Parent=Msa0240660-mRNA-1
chr2_2 exon 16011446 16011508 16011446 ID=Msa0240660-mRNA-1:exon:6541;Parent=Msa0240660-mRNA-1
chr2_2 exon 16011604 16011663 16011604 ID=Msa0240660-mRNA-1:exon:6542;Parent=Msa0240660-mRNA-1
chr2_2 exon 16011747 16011800 16011747 ID=Msa0240660-mRNA-1:exon:6543;Parent=Msa0240660-mRNA-1
chr2_2 exon 16011904 16011963 16011904 ID=Msa0240660-mRNA-1:exon:6544;Parent=Msa0240660-mRNA-1
chr2_2 exon 16012257 16012371 16012257 ID=Msa0240660-mRNA-1:exon:6545;Parent=Msa0240660-mRNA-1
chr2_2 exon 16012517 16012916 16012517 ID=Msa0240660-mRNA-1:exon:6546;Parent=Msa0240660-mRNA-1
chr2_2 five_prime_UTR 16009958 16009983 16009958 ID=Msa0240660-mRNA-1:five_prime_utr;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16009984 16010067 16009984 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16010179 16010254 16010179 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16010382 16010446 16010382 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16010549 16010641 16010549 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16010760 16010840 16010760 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16011042 16011126 16011042 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16011308 16011351 16011308 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16011446 16011508 16011446 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16011604 16011663 16011604 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16011747 16011800 16011747 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16011904 16011963 16011904 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16012257 16012371 16012257 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 CDS 16012517 16012632 16012517 ID=Msa0240660-mRNA-1:cds;Parent=Msa0240660-mRNA-1
chr2_2 three_prime_UTR 16012633 16012916 16012633 ID=Msa0240660-mRNA-1:three_prime_utr;Parent=Msa0240660-mRNA-1
Gene Sequence

>Msa0240660

ATGTGTTACATATATAAGGTTCCTGTGTTCGTAGCAGAAATTGCGCCAAAAGAACTCCGAGGTGCCCTGACTACCTTAAATCAGTTCATGATTGTTACTGCTGTATCAGTGTCATTCATAATTGGAACAGTACTTTCATGGAGGGCTTTAGCTATAATCGGCCTTATTCCCACTGCTGTGTTGCTTCTGGGTCTGTTTTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAGCGAGGACGCACAAAAGATTTTGTGGCAGCATTACAAATACTTCGCGGTAAAGATGCTGATATATCTGAAGAGGCAGAAGAAATTCAGGATTATATAACTAGTTTAGAACAGCTCGCAAAACCGAAGGTGCTGGATTTGTTACAAAGAAGATATTTACGCTCACTCACAATTGGAGTAGGGCTTATGGTTTGCCAGCAATTAGGGGGAATCAATGGTGTTTGCTTTTATACTAGTAGTATTTTTGATCTAGCAGGATTTCCTTCTGCGACGGGGAGTATAATATACGCTATCCTTCAGATTGTGATCACAGGTGTTGGAGCAGCCCTCATAGATAGAGCAGGCCGGAAGCCACTACTTTTGGTATCTGGATCAGGATTGGTTGCAGGATGCATATTTACAGCAGTTGCATTCTATCTCAAGGTTCATGATGTGGCTGTGGGAGCAGTCCCAGCACTTGCCGTAACTGGCATATTGGTCTACATAGGATCGTTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGATATTTCCAGTCAATATTAAGGGGCAGGCAGGAAGCATAGCAACATTAGTGAACTGGTTTGGTGCATGGTTATGCTCCTATACTTTCAACTTTCTCATGAGTTGGAGCTCCTATGGTACCTTCGTTCTTTACGCTGCAATCAATGCACTGTCTATATTATTTATAGTTGTAGTAGTCCCAGAAACCAAAGGTAAAAGCCTTGAACAATTACAGGCAGCCATTATCGCGTAG
Protein sequence

>Msa0240660

MCYIYKVPVFVAEIAPKELRGALTTLNQFMIVTAVSVSFIIGTVLSWRALAIIGLIPTAVLLLGLFFIPESPRWLAKRGRTKDFVAALQILRGKDADISEEAEEIQDYITSLEQLAKPKVLDLLQRRYLRSLTIGVGLMVCQQLGGINGVCFYTSSIFDLAGFPSATGSIIYAILQIVITGVGAALIDRAGRKPLLLVSGSGLVAGCIFTAVAFYLKVHDVAVGAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGQAGSIATLVNWFGAWLCSYTFNFLMSWSSYGTFVLYAAINALSILFIVVVVPETKGKSLEQLQAAIIA*