AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0318230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318230 MtrunA17_Chr7g0259221 89.865 296 7 2 29 303 184 477 0.0 515
Msa0318230 MtrunA17_Chr7g0259471 85.473 296 20 2 29 303 182 475 1.27e-175 494
Msa0318230 MtrunA17_Chr4g0066581 54.882 297 110 3 29 303 194 488 1.42e-107 321
Msa0318230 MtrunA17_Chr2g0286721 53.872 297 113 3 29 303 191 485 1.29e-101 306
Msa0318230 MtrunA17_Chr7g0273281 47.249 309 137 3 19 303 191 497 1.96e-94 288
Msa0318230 MtrunA17_Chr1g0155221 44.108 297 137 3 29 298 191 485 1.30e-77 244
Msa0318230 MtrunA17_Chr8g0373181 41.801 311 150 5 17 298 174 482 1.75e-73 233
Msa0318230 MtrunA17_Chr8g0373191 40.615 325 159 6 7 300 135 456 9.28e-69 221
Msa0318230 MtrunA17_Chr7g0273261 45.614 228 99 3 96 302 15 238 4.50e-66 207
Msa0318230 MtrunA17_Chr7g0221631 90.123 81 6 1 188 268 39 117 3.04e-45 149
Msa0318230 MtrunA17_Chr1g0213631 31.293 294 163 10 37 298 143 429 3.48e-34 129
Msa0318230 MtrunA17_Chr4g0021771 30.796 289 174 6 36 298 211 499 1.82e-32 125
Msa0318230 MtrunA17_Chr4g0032021 31.613 310 174 11 27 301 248 554 2.33e-32 125
Msa0318230 MtrunA17_Chr6g0457781 29.688 320 183 9 17 303 234 544 2.75e-32 125
Msa0318230 MtrunA17_Chr1g0213611 29.492 295 170 7 37 298 236 525 3.92e-32 125
Msa0318230 MtrunA17_Chr5g0404181 51.020 98 48 0 201 298 31 128 1.99e-31 114
Msa0318230 MtrunA17_Chr7g0250881 28.840 319 185 9 17 302 194 503 5.94e-31 121
Msa0318230 MtrunA17_Chr7g0214451 30.717 293 165 9 37 298 191 476 1.66e-29 117
Msa0318230 MtrunA17_Chr4g0034681 28.387 310 172 7 36 300 186 490 5.85e-29 115
Msa0318230 MtrunA17_Chr3g0144361 28.617 311 170 7 36 299 184 489 3.80e-28 113
Msa0318230 MtrunA17_Chr7g0259451 92.000 50 4 0 217 266 1 50 1.33e-27 101
Msa0318230 MtrunA17_Chr2g0282031 30.272 294 169 7 36 298 209 497 7.84e-27 109
Msa0318230 MtrunA17_Chr3g0121674 29.553 291 161 10 41 297 2 282 1.93e-26 105
Msa0318230 MtrunA17_Chr3g0115731 28.840 319 184 8 12 297 154 462 1.60e-25 105
Msa0318230 MtrunA17_Chr4g0039651 28.065 310 178 11 27 299 197 498 1.87e-25 105
Msa0318230 MtrunA17_Chr3g0115721 28.904 301 182 6 26 297 186 483 1.30e-24 103
Msa0318230 MtrunA17_Chr3g0115751 27.723 303 183 6 26 297 191 488 6.09e-24 101
Msa0318230 MtrunA17_Chr3g0115781 26.207 290 182 5 38 298 200 486 6.43e-24 101
Msa0318230 MtrunA17_Chr4g0036021 28.803 309 167 10 38 300 185 486 6.66e-24 101
Msa0318230 MtrunA17_Chr3g0115741 27.835 291 174 6 38 297 201 486 1.17e-23 100
Msa0318230 MtrunA17_Chr6g0486021 25.697 323 184 9 17 301 182 486 2.78e-23 99.4
Msa0318230 MtrunA17_Chr3g0115711 26.962 293 173 7 38 297 198 482 3.67e-22 96.3
Msa0318230 MtrunA17_Chr5g0432581 28.438 320 178 10 27 298 163 479 4.21e-22 96.3
Msa0318230 MtrunA17_Chr5g0404191 45.055 91 50 0 29 119 192 282 1.43e-21 92.4
Msa0318230 MtrunA17_Chr4g0004821 27.972 286 181 7 38 303 194 474 5.99e-21 92.8
Msa0318230 MtrunA17_Chr8g0373531 28.750 320 177 10 27 298 163 479 9.86e-21 92.0
Msa0318230 MtrunA17_Chr8g0390141 27.083 288 177 7 38 297 203 485 2.11e-20 91.3
Msa0318230 MtrunA17_Chr4g0065324 28.125 288 173 8 38 297 205 486 1.42e-19 88.6
Msa0318230 MtrunA17_Chr3g0078971 23.611 288 189 6 38 298 201 484 2.85e-19 87.8
Msa0318230 MtrunA17_Chr8g0390521 26.623 308 168 8 36 298 174 468 3.32e-19 87.8
Msa0318230 MtrunA17_Chr3g0078791 26.022 269 186 6 38 297 146 410 1.02e-17 83.2
Msa0318230 MtrunA17_Chr4g0065351 27.083 288 176 7 38 297 40 321 1.75e-17 81.6
Msa0318230 MtrunA17_Chr4g0065311 25.862 290 177 8 38 297 197 478 1.95e-17 82.4
Msa0318230 MtrunA17_Chr3g0119401 26.263 297 175 10 38 303 251 534 2.73e-17 82.0
Msa0318230 MtrunA17_Chr6g0485661 26.578 301 184 7 26 293 206 502 3.69e-17 81.6
Msa0318230 MtrunA17_Chr3g0078991 24.828 290 184 7 38 298 201 485 4.17e-17 81.6
Msa0318230 MtrunA17_Chr7g0257631 26.224 286 181 7 38 297 237 518 9.26e-17 80.5
Msa0318230 MtrunA17_Chr1g0205691 24.399 291 189 7 38 301 201 487 2.43e-16 79.3
Msa0318230 MtrunA17_Chr8g0390261 25.694 288 181 7 38 297 203 485 2.50e-16 79.3
Msa0318230 MtrunA17_Chr5g0394341 22.680 291 194 7 38 301 201 487 3.32e-16 79.0
Msa0318230 MtrunA17_Chr3g0085971 26.117 291 180 8 38 298 200 485 3.36e-16 79.0
Msa0318230 MtrunA17_Chr5g0445601 24.825 286 185 7 38 297 203 484 5.65e-16 78.2
Msa0318230 MtrunA17_Chr1g0164851 26.460 291 178 9 38 298 200 484 3.41e-15 75.9
Msa0318230 MtrunA17_Chr5g0419321 28.235 255 136 8 84 295 479 729 4.02e-15 75.9
Msa0318230 MtrunA17_Chr1g0205671 23.051 295 188 7 38 301 201 487 4.87e-15 75.1
Msa0318230 MtrunA17_Chr5g0437021 27.304 293 173 11 38 298 200 484 5.33e-15 75.1
Msa0318230 MtrunA17_Chr3g0128081 26.207 290 179 7 38 297 201 485 8.25e-15 74.7
Msa0318230 MtrunA17_Chr1g0164871 26.117 291 179 9 38 298 200 484 8.64e-15 74.7
Msa0318230 MtrunA17_Chr6g0486681 23.611 288 187 6 38 297 203 485 9.54e-15 74.3
Msa0318230 MtrunA17_Chr6g0486671 23.611 288 187 6 38 297 203 485 9.54e-15 74.3
Msa0318230 MtrunA17_Chr5g0403831 22.684 313 187 8 36 299 187 493 9.74e-15 74.3
Msa0318230 MtrunA17_Chr5g0434261 25.497 302 163 9 47 291 7 303 1.85e-14 72.8
Msa0318230 MtrunA17_Chr2g0303731 40.000 100 57 2 201 298 452 550 1.88e-14 73.6
Msa0318230 MtrunA17_Chr2g0303731 27.536 138 90 4 37 168 184 317 2.59e-11 64.3
Msa0318230 MtrunA17_Chr5g0407441 28.326 233 128 7 98 295 475 703 2.10e-14 73.6
Msa0318230 MtrunA17_Chr8g0376631 37.864 103 55 2 201 298 451 549 2.11e-14 73.6
Msa0318230 MtrunA17_Chr8g0376631 27.778 144 97 3 37 177 184 323 1.25e-12 68.2
Msa0318230 MtrunA17_Chr4g0048411 25.839 298 172 10 38 298 201 486 3.03e-14 72.8
Msa0318230 MtrunA17_Chr1g0205681 23.051 295 188 7 38 301 202 488 6.54e-14 72.0
Msa0318230 MtrunA17_Chr8g0376601 30.556 144 93 3 37 177 184 323 8.97e-14 71.6
Msa0318230 MtrunA17_Chr8g0376601 39.130 92 55 1 201 291 450 541 2.58e-13 70.1
Msa0318230 MtrunA17_Chr8g0376611 29.630 135 91 2 37 168 117 250 1.96e-13 70.5
Msa0318230 MtrunA17_Chr8g0376611 35.514 107 60 2 201 302 382 484 2.47e-13 70.1
Msa0318230 MtrunA17_Chr5g0417611 25.000 296 175 8 38 297 202 486 2.25e-13 70.5
Msa0318230 MtrunA17_Chr2g0290181 35.354 99 63 1 201 298 455 553 2.55e-13 70.1
Msa0318230 MtrunA17_Chr4g0048051 24.399 291 187 7 36 297 199 485 4.95e-13 69.3
Msa0318230 MtrunA17_Chr3g0146061 27.556 225 128 6 104 295 499 721 5.25e-13 69.3
Msa0318230 MtrunA17_Chr5g0434251 34.579 107 61 2 201 302 38 140 6.83e-13 65.5
Msa0318230 MtrunA17_Chr3g0144261 27.500 200 113 4 128 295 512 711 8.78e-13 68.6
Msa0318230 MtrunA17_Chr8g0370151 30.622 209 107 7 121 295 138 342 1.24e-12 67.8
Msa0318230 MtrunA17_Chr2g0303701 28.966 145 91 4 37 177 184 320 8.90e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318230 AT2G48020.2 65.472 307 83 2 17 302 158 462 1.47e-138 400
Msa0318230 AT2G48020.1 65.472 307 83 2 17 302 158 462 1.47e-138 400
Msa0318230 AT1G54730.5 48.333 300 149 3 7 302 148 445 8.70e-99 298
Msa0318230 AT3G05150.1 48.589 319 136 4 7 299 151 467 5.54e-97 294
Msa0318230 AT3G05150.3 48.589 319 136 4 7 299 151 467 5.54e-97 294
Msa0318230 AT3G05150.2 48.287 321 138 4 7 301 151 469 8.40e-97 294
Msa0318230 AT5G18840.1 53.041 296 115 3 29 302 186 479 1.14e-96 293
Msa0318230 AT1G54730.2 45.171 321 149 4 7 302 148 466 7.95e-94 286
Msa0318230 AT1G54730.4 49.621 264 127 3 7 266 148 409 2.02e-86 265
Msa0318230 AT3G05160.3 43.729 295 143 2 30 303 115 407 2.31e-83 257
Msa0318230 AT3G05160.2 43.729 295 143 2 30 303 115 407 2.31e-83 257
Msa0318230 AT3G05160.1 43.729 295 143 2 30 303 164 456 5.92e-83 258
Msa0318230 AT1G54730.3 45.965 285 127 4 7 266 148 430 1.84e-81 253
Msa0318230 AT3G05165.3 43.051 295 145 2 30 303 173 465 2.55e-81 253
Msa0318230 AT3G05165.2 43.051 295 145 2 30 303 173 465 2.55e-81 253
Msa0318230 AT3G05165.1 43.051 295 145 2 30 303 173 465 2.55e-81 253
Msa0318230 AT3G05155.1 43.098 297 142 4 28 302 168 459 9.82e-79 247
Msa0318230 AT4G04750.1 43.289 298 143 4 27 300 175 470 3.45e-78 246
Msa0318230 AT4G04750.2 43.289 298 143 4 27 300 175 470 3.45e-78 246
Msa0318230 AT1G08930.1 42.667 300 148 4 25 302 195 492 5.62e-78 246
Msa0318230 AT1G08930.2 42.667 300 148 4 25 302 195 492 5.62e-78 246
Msa0318230 AT4G04750.3 43.289 298 143 4 27 300 219 514 8.40e-78 246
Msa0318230 AT4G04760.3 43.537 294 140 3 30 299 115 406 1.18e-76 240
Msa0318230 AT2G48020.4 59.624 213 63 2 17 208 158 368 2.14e-76 238
Msa0318230 AT4G04760.1 43.537 294 140 3 30 299 174 465 5.10e-76 240
Msa0318230 AT1G08920.1 41.000 300 153 3 25 302 169 466 6.74e-76 239
Msa0318230 AT1G08920.2 40.717 307 151 3 25 302 169 473 1.33e-75 239
Msa0318230 AT1G19450.1 43.849 317 137 6 17 299 176 485 1.21e-74 237
Msa0318230 AT1G75220.1 43.269 312 146 4 17 299 175 484 1.27e-74 237
Msa0318230 AT5G27350.1 42.414 290 144 2 33 301 177 464 3.03e-72 230
Msa0318230 AT3G20460.1 41.042 307 158 3 17 302 183 487 4.56e-72 230
Msa0318230 AT3G05400.2 43.151 292 139 5 30 298 149 436 2.70e-71 227
Msa0318230 AT3G05400.1 43.151 292 139 5 30 298 169 456 3.48e-71 227
Msa0318230 AT5G27360.2 41.379 290 147 2 33 301 77 364 4.21e-71 224
Msa0318230 AT5G27360.5 41.379 290 147 2 33 301 77 364 4.21e-71 224
Msa0318230 AT5G27360.1 41.379 290 147 2 33 301 181 468 2.10e-70 226
Msa0318230 AT5G27360.3 41.379 290 147 2 33 301 229 516 4.16e-70 226
Msa0318230 AT4G04760.2 42.808 292 142 6 30 299 174 462 4.77e-69 222
Msa0318230 AT3G05165.6 41.825 263 130 2 30 271 173 433 8.44e-67 217
Msa0318230 AT1G54730.8 46.957 230 116 3 7 232 148 375 6.33e-66 212
Msa0318230 AT1G08920.3 40.530 264 133 3 25 266 169 430 3.03e-63 206
Msa0318230 AT1G08890.1 36.860 293 162 2 30 301 170 460 4.04e-63 206
Msa0318230 AT2G48020.3 66.234 154 50 1 17 170 158 309 9.91e-63 202
Msa0318230 AT1G08900.5 35.390 308 176 2 15 301 111 416 2.76e-62 203
Msa0318230 AT1G08900.3 35.390 308 176 2 15 301 145 450 4.17e-62 203
Msa0318230 AT1G08900.1 35.390 308 176 2 15 301 153 458 5.35e-62 203
Msa0318230 AT1G08900.2 35.390 308 176 2 15 301 153 458 5.35e-62 203
Msa0318230 AT1G54730.9 43.028 251 116 4 7 232 148 396 9.01e-61 199
Msa0318230 AT1G54730.7 43.028 251 116 4 7 232 148 396 9.01e-61 199
Msa0318230 AT3G05165.4 40.562 249 125 2 30 257 173 419 1.80e-58 194
Msa0318230 AT3G05165.5 40.562 249 125 2 30 257 173 419 1.80e-58 194
Msa0318230 AT1G08900.4 35.165 273 154 2 15 266 153 423 1.43e-49 170
Msa0318230 AT1G54730.10 48.521 169 81 3 7 171 148 314 2.78e-46 159
Msa0318230 AT1G54730.6 48.521 169 81 3 7 171 148 314 2.78e-46 159
Msa0318230 AT1G54730.11 49.677 155 73 2 19 170 161 313 2.86e-45 157
Msa0318230 AT3G05155.2 46.853 143 71 2 28 170 168 305 3.05e-37 135
Msa0318230 AT5G27360.4 36.019 211 112 2 33 222 181 389 6.34e-36 134
Msa0318230 AT2G43330.1 30.968 310 171 11 23 298 176 476 2.57e-35 133
Msa0318230 AT5G16150.2 28.750 320 186 9 17 303 234 544 4.74e-31 122
Msa0318230 AT5G16150.1 28.750 320 186 9 17 303 234 544 4.74e-31 122
Msa0318230 AT5G16150.3 28.750 320 186 9 17 303 234 544 4.74e-31 122
Msa0318230 AT5G59250.1 30.868 311 177 11 26 301 249 556 1.89e-30 120
Msa0318230 AT2G20780.1 29.153 295 169 7 36 298 211 497 6.22e-28 113
Msa0318230 AT2G20780.2 29.153 295 169 7 36 298 153 439 1.05e-27 112
Msa0318230 AT5G17010.1 30.420 286 163 8 47 299 218 500 1.17e-27 112
Msa0318230 AT5G17010.3 30.420 286 163 8 47 299 218 500 1.17e-27 112
Msa0318230 AT5G17010.4 30.420 286 163 8 47 299 218 500 1.17e-27 112
Msa0318230 AT3G03090.1 29.333 300 174 9 34 299 205 500 7.12e-26 107
Msa0318230 AT1G67300.2 28.213 319 182 9 20 303 186 492 2.28e-25 105
Msa0318230 AT1G67300.1 28.302 318 182 9 20 303 186 491 2.29e-25 105
Msa0318230 AT1G67300.3 28.302 318 182 9 20 303 186 491 2.29e-25 105
Msa0318230 AT2G16130.1 27.419 310 175 10 36 299 182 487 1.21e-23 100
Msa0318230 AT2G16120.1 27.184 309 175 10 36 298 182 486 2.45e-23 100
Msa0318230 AT1G67300.6 30.159 252 147 6 20 246 186 433 1.70e-22 97.4
Msa0318230 AT1G67300.7 30.159 252 147 6 20 246 186 433 1.70e-22 97.4
Msa0318230 AT1G05030.2 27.083 288 183 7 38 303 185 467 3.01e-22 96.7
Msa0318230 AT1G05030.1 27.083 288 183 7 38 303 237 519 4.17e-22 96.7
Msa0318230 AT1G79820.2 28.421 285 177 6 38 301 212 490 4.32e-22 96.3
Msa0318230 AT1G79820.1 28.421 285 177 6 38 301 212 490 4.32e-22 96.3
Msa0318230 AT4G36670.1 27.124 306 180 8 36 299 173 477 7.90e-22 95.5
Msa0318230 AT1G67300.4 30.453 243 140 6 20 237 186 424 2.51e-21 94.0
Msa0318230 AT1G67300.5 30.453 243 140 6 20 237 186 424 2.51e-21 94.0
Msa0318230 AT3G18830.1 24.918 305 186 8 36 298 192 495 1.12e-20 92.4
Msa0318230 AT1G50310.2 25.000 288 185 7 38 297 59 343 2.71e-20 90.5
Msa0318230 AT5G26340.1 25.086 291 187 6 38 301 202 488 4.73e-20 90.5
Msa0318230 AT1G50310.1 25.000 288 185 7 38 297 202 486 9.05e-20 89.7
Msa0318230 AT2G18480.1 25.081 307 182 6 36 298 178 480 4.24e-19 87.8
Msa0318230 AT3G19940.1 24.567 289 184 7 38 297 202 485 5.64e-19 87.4
Msa0318230 AT1G34580.2 28.522 291 175 8 38 297 149 437 1.02e-18 86.3
Msa0318230 AT1G34580.1 28.522 291 175 8 38 297 199 487 1.16e-18 86.7
Msa0318230 AT1G11260.1 26.190 294 174 7 38 297 201 485 2.23e-18 85.5
Msa0318230 AT1G79820.4 29.515 227 138 4 38 246 212 434 2.25e-18 85.5
Msa0318230 AT5G23270.1 25.685 292 181 7 36 297 201 486 1.07e-17 83.6
Msa0318230 AT4G21480.1 26.871 294 174 8 38 298 199 484 1.03e-16 80.9
Msa0318230 AT4G02050.2 24.126 286 187 6 38 297 203 484 1.60e-16 80.1
Msa0318230 AT4G02050.1 24.126 286 187 6 38 297 203 484 1.60e-16 80.1
Msa0318230 AT1G07340.1 26.552 290 177 6 38 297 198 481 3.84e-16 79.0
Msa0318230 AT3G19930.1 24.917 301 174 8 36 298 198 484 5.07e-16 78.6
Msa0318230 AT3G19930.2 24.917 301 174 8 36 298 198 484 5.07e-16 78.6
Msa0318230 AT2G35740.1 41.414 99 57 1 201 298 458 556 1.25e-15 77.4
Msa0318230 AT4G16480.2 37.374 99 61 1 201 298 459 557 8.44e-15 75.1
Msa0318230 AT4G16480.3 37.374 99 61 1 201 298 459 557 8.44e-15 75.1
Msa0318230 AT4G16480.1 37.374 99 61 1 201 298 459 557 8.44e-15 75.1
Msa0318230 AT1G30220.1 36.449 107 59 2 201 302 455 557 9.59e-15 75.1
Msa0318230 AT1G30220.1 31.618 136 87 4 37 168 186 319 4.91e-14 72.8
Msa0318230 AT1G20840.2 30.435 207 110 5 121 295 509 713 1.57e-14 74.3
Msa0318230 AT1G20840.1 30.435 207 110 5 121 295 509 713 1.57e-14 74.3
Msa0318230 AT3G51490.1 28.745 247 137 8 75 295 473 706 2.33e-14 73.9
Msa0318230 AT3G51490.3 27.668 253 140 7 75 295 423 664 9.66e-14 72.0
Msa0318230 AT3G51490.2 27.273 253 141 6 75 295 473 714 1.29e-13 71.6
Msa0318230 AT3G05960.1 26.689 296 175 10 38 301 197 482 1.44e-13 71.2
Msa0318230 AT5G26250.1 26.102 295 178 10 38 301 198 483 2.25e-13 70.9
Msa0318230 AT4G35300.9 28.440 218 116 7 113 295 498 710 1.43e-11 65.5
Msa0318230 AT4G35300.2 28.440 218 116 7 113 295 498 710 1.43e-11 65.5
Msa0318230 AT4G35300.3 28.440 218 116 7 113 295 498 710 1.43e-11 65.5
Msa0318230 AT4G35300.4 28.440 218 116 7 113 295 508 720 1.82e-11 65.1
Msa0318230 AT4G35300.8 28.440 218 116 7 113 295 508 720 1.82e-11 65.1
Msa0318230 AT4G35300.6 28.440 218 116 7 113 295 508 720 1.82e-11 65.1
Msa0318230 AT4G35300.11 28.440 218 116 7 113 295 508 720 1.82e-11 65.1
Msa0318230 AT4G35300.1 28.440 218 116 7 113 295 508 720 1.82e-11 65.1
Msa0318230 AT4G35300.10 28.440 218 116 7 113 295 508 720 1.82e-11 65.1
Msa0318230 AT4G35300.7 28.440 218 116 7 113 295 508 720 1.82e-11 65.1

Find 88 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCACTGCTGTGTTGCTTC+TGG 0.130660 2_4:-16764857 Msa0318230:CDS
GCAAACTTCCTACGCGTTAA+TGG 0.190131 2_4:+16762653 None:intergenic
CTTGGTTTCAATTAGGTATC+TGG 0.196736 2_4:-16763681 Msa0318230:intron
CTTATGGTTTGCCAGCAATT+AGG 0.210158 2_4:-16764193 Msa0318230:CDS
GATATTTCCAGTCAATATTA+AGG 0.214954 2_4:-16763016 Msa0318230:CDS
TTATGGTTTGCCAGCAATTA+GGG 0.246534 2_4:-16764192 Msa0318230:CDS
AGGGCACCTCGGAGTTCTTT+TGG 0.268637 2_4:+16765252 None:intergenic
GTGTAGTGTTTGGTGGAAAT+TGG 0.274589 2_4:-16762625 Msa0318230:three_prime_UTR
CCCACTGCTGTGTTGCTTCT+GGG 0.289747 2_4:-16764856 Msa0318230:CDS
GCAACACAGCAGTGGGAATA+AGG 0.301338 2_4:+16764863 None:intergenic
TAAAAGCCTTGAACAATTAC+AGG 0.318980 2_4:-16762679 Msa0318230:CDS
TGTATCAGTGCATTCATAAT+TGG 0.321197 2_4:-16765046 Msa0318230:CDS
GGGGATGCATTATACTATTA+AGG 0.350240 2_4:+16762438 None:intergenic
TAATTGGAACAGTACTTTCA+TGG 0.363139 2_4:-16765030 Msa0318230:CDS
AGTATCTGGAGTAGGGCTTA+TGG 0.367600 2_4:-16764209 Msa0318230:CDS
GTCCCAGCACTTGCCGTAAC+CGG 0.369576 2_4:-16763501 Msa0318230:CDS
TTCAATTAGGTATCTGGATC+AGG 0.372298 2_4:-16763675 Msa0318230:intron
TGAAGAGGCAGAAGAAATTC+AGG 0.379612 2_4:-16764626 Msa0318230:intron
TGGCTGCCTGTAATTGTTCA+AGG 0.392084 2_4:+16762673 None:intergenic
ACTTGCCGTAACCGGCATAT+TGG 0.393259 2_4:-16763493 Msa0318230:intron
TAACGTGGTTTCATAAAGAA+TGG 0.394263 2_4:-16762360 Msa0318230:three_prime_UTR
TATAATATACGCTATCCTTC+AGG 0.395137 2_4:-16763917 Msa0318230:intron
ATACCTGATTTAAGGTAGTC+AGG 0.404425 2_4:+16765232 None:intergenic
CTCATGAGTTGGAGCTCCTA+TGG 0.410624 2_4:-16762922 Msa0318230:intron
TCTTCATGAGTATCTGGAGT+AGG 0.414187 2_4:-16764217 Msa0318230:intron
TTATTACTTACCAGCCATCT+AGG 0.415487 2_4:+16764811 None:intergenic
TGGAGGGCTTTAGCTATAAT+CGG 0.425528 2_4:-16765010 Msa0318230:intron
TGCCCTGACTACCTTAAATC+AGG 0.427867 2_4:-16765235 Msa0318230:intron
CTTCATGAGTATCTGGAGTA+GGG 0.431472 2_4:-16764216 Msa0318230:intron
ATGCCGGTTACGGCAAGTGC+TGG 0.431492 2_4:+16763498 None:intergenic
TGAAACAAATCCAGCACCTT+CGG 0.432421 2_4:+16764453 None:intergenic
TCATTCCAGAGTCTCCTAGA+TGG 0.435503 2_4:-16764825 Msa0318230:CDS
CTTTCAACTTTCTCATGAGT+TGG 0.435734 2_4:-16762933 Msa0318230:CDS
TCTGGATCAGGATTGGTTGC+AGG 0.437259 2_4:-16763663 Msa0318230:CDS
GCATAGCAACATTAGTGAAC+TGG 0.437404 2_4:-16762981 Msa0318230:CDS
ATATTTCCAGTCAATATTAA+GGG 0.442648 2_4:-16763015 Msa0318230:CDS
GTCAATATTAAGGGGCAGGC+AGG 0.454849 2_4:-16763006 Msa0318230:CDS
ACAAATTATAATCAAAATCA+TGG 0.458705 2_4:+16762508 None:intergenic
TATGAAACCACGTTAAATCA+AGG 0.459071 2_4:+16762368 None:intergenic
ATAGGATTTCCTTCTGCGAC+GGG 0.459192 2_4:-16763943 Msa0318230:intron
GCAACATTAGTGAACTGGTT+TGG 0.459624 2_4:-16762976 Msa0318230:CDS
CATGAGAAAGTTGAAAGTAT+AGG 0.464787 2_4:+16762939 None:intergenic
CCATACCAATATGCCGGTTA+CGG 0.465306 2_4:+16763488 None:intergenic
TTTGCGATTTGTGTAGTGTT+TGG 0.466010 2_4:-16762635 Msa0318230:three_prime_UTR
TCCAGTCAATATTAAGGGGC+AGG 0.473585 2_4:-16763010 Msa0318230:CDS
GCTCGCAAAACCGAAGGTGC+TGG 0.477284 2_4:-16764463 Msa0318230:CDS
GCCTGCCCCTTAATATTGAC+TGG 0.493013 2_4:+16763009 None:intergenic
GCGATTTGTGTAGTGTTTGG+TGG 0.502161 2_4:-16762632 Msa0318230:three_prime_UTR
TTAGGTATCTGGATCAGGAT+TGG 0.517795 2_4:-16763670 Msa0318230:intron
TCCAGAGTCTCCTAGATGGC+TGG 0.523060 2_4:-16764821 Msa0318230:intron
TGCCGGTTACGGCAAGTGCT+GGG 0.527544 2_4:+16763499 None:intergenic
TAGGAATGGGAGCAATTCCA+TGG 0.529632 2_4:-16763346 Msa0318230:CDS
TGGAACAGTACTTTCATGGA+GGG 0.532101 2_4:-16765026 Msa0318230:CDS
ACCAGCCATCTAGGAGACTC+TGG 0.543206 2_4:+16764820 None:intergenic
CATAGGATTTCCTTCTGCGA+CGG 0.543429 2_4:-16763944 Msa0318230:intron
TGCTGATATTAGGTCTACAT+AGG 0.553729 2_4:-16763380 Msa0318230:intron
TAGTGAACTGGTTTGGTGCA+TGG 0.558886 2_4:-16762969 Msa0318230:CDS
ACCTCGGACATCACAACCCA+TGG 0.560460 2_4:+16763329 None:intergenic
TACCTGATTTAAGGTAGTCA+GGG 0.563340 2_4:+16765233 None:intergenic
ATTATACTCCCCGTCGCAGA+AGG 0.566503 2_4:+16763934 None:intergenic
ACAGGTTCATGATGTGGCTG+TGG 0.570506 2_4:-16763529 Msa0318230:intron
AGCAGTTGCATTCTATCTCA+AGG 0.573615 2_4:-16763628 Msa0318230:intron
AGATGCTGATATATCTGAAG+AGG 0.576120 2_4:-16764641 Msa0318230:CDS
ACCCAGAAGCAACACAGCAG+TGG 0.576369 2_4:+16764855 None:intergenic
CCCAGAAGCAACACAGCAGT+GGG 0.578353 2_4:+16764856 None:intergenic
TATTTCCAGTCAATATTAAG+GGG 0.587860 2_4:-16763014 Msa0318230:CDS
ATGTAGCCATACCAATATGC+CGG 0.588017 2_4:+16763482 None:intergenic
GGTGGAAATTGGAACAACAA+AGG 0.604202 2_4:-16762614 Msa0318230:three_prime_UTR
ATGGTTTGCCAGCAATTAGG+GGG 0.608563 2_4:-16764190 Msa0318230:CDS
CAGGTTCATGATGTGGCTGT+GGG 0.612693 2_4:-16763528 Msa0318230:CDS
TAATGAATGCAGGCAAAGCG+AGG 0.623838 2_4:-16764709 Msa0318230:intron
TATGGTTTGCCAGCAATTAG+GGG 0.634878 2_4:-16764191 Msa0318230:CDS
AGAACAGCTCGCAAAACCGA+AGG 0.635960 2_4:-16764469 Msa0318230:CDS
AAACCACGTTAAATCAAGGA+GGG 0.638299 2_4:+16762372 None:intergenic
ACAGGCAGCCATTAACGCGT+AGG 0.638486 2_4:-16762661 Msa0318230:exon
AAATCAAGGAGGGAATTCGT+TGG 0.645604 2_4:+16762382 None:intergenic
GCAGCATTACAAATACTTCG+CGG 0.650248 2_4:-16764667 Msa0318230:CDS
ATTCCCTCCTTGATTTAACG+TGG 0.654398 2_4:-16762375 Msa0318230:three_prime_UTR
GAAACCACGTTAAATCAAGG+AGG 0.655009 2_4:+16762371 None:intergenic
GTAGTAGTCCCAGAAACCAA+AGG 0.657750 2_4:-16762702 Msa0318230:CDS
TTGGAACAGTACTTTCATGG+AGG 0.660408 2_4:-16765027 Msa0318230:CDS
TAGGATTTCCTTCTGCGACG+GGG 0.661364 2_4:-16763942 Msa0318230:CDS
TGAGTAACAGGTTCATGATG+TGG 0.666123 2_4:-16763535 Msa0318230:intron
TTAAGGTAGTCAGGGCACCT+CGG 0.669152 2_4:+16765241 None:intergenic
AGGAATGGGAGCAATTCCAT+GGG 0.675398 2_4:-16763345 Msa0318230:CDS
GATTGCAGCGTAAAGAACGA+AGG 0.710685 2_4:+16762752 None:intergenic
TCCATGGGTTGTGATGTCCG+AGG 0.731376 2_4:-16763330 Msa0318230:intron
ATTGCGCCAAAAGAACTCCG+AGG 0.763517 2_4:-16765258 Msa0318230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATTTTACATAAATATT+AGG + chr2_4:16764138-16764157 None:intergenic 10.0%
!!! ATTTTGATTATAATTTGTAT+TGG - chr2_4:16765197-16765216 Msa0318230:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765281-16765300 None:intergenic 100.0%
!!! TTTATTTTGTTTTGGTTTAT+TGG - chr2_4:16763722-16763741 Msa0318230:intron 15.0%
!! ATTAACCAATAATTAATTCT+TGG - chr2_4:16763819-16763838 Msa0318230:intron 15.0%
!! ATTATCCAAGAATTAATTAT+TGG + chr2_4:16763827-16763846 None:intergenic 15.0%
!! AAATAAAAATAAGTTGTTTG+TGG + chr2_4:16763953-16763972 None:intergenic 15.0%
!!! TACTTTTATTTATGATTTTC+AGG - chr2_4:16764923-16764942 Msa0318230:intron 15.0%
!! ACAAATTATAATCAAAATCA+TGG + chr2_4:16765195-16765214 None:intergenic 15.0%
!! TTAGATGTGTTACATATATA+AGG - chr2_4:16762399-16762418 Msa0318230:intron 20.0%
!! AGAAAAATATACCTGATTTA+AGG + chr2_4:16762479-16762498 None:intergenic 20.0%
!!! CTCAGATTTTTATTTTGTTT+TGG - chr2_4:16763714-16763733 Msa0318230:intron 20.0%
!! ATTTAAAAATAAGAACCTGA+AGG + chr2_4:16763801-16763820 None:intergenic 20.0%
!! AATAAAAATCATGATTGAGT+TGG + chr2_4:16763872-16763891 None:intergenic 20.0%
!!! ATACTCTTATTGTTATTTCT+TGG - chr2_4:16764001-16764020 Msa0318230:intron 20.0%
!! TTGATATTAAAAACTGAAAG+TGG + chr2_4:16764414-16764433 None:intergenic 20.0%
!! ATATTTCCAGTCAATATTAA+GGG - chr2_4:16764685-16764704 Msa0318230:CDS 20.0%
!! AATGTATTAGTATTTACCAT+AGG + chr2_4:16764797-16764816 None:intergenic 20.0%
!! TGATTATCGTATAATAATTC+TGG + chr2_4:16764862-16764881 None:intergenic 20.0%
! CAGCTTAATTGCATTATATT+TGG + chr2_4:16763171-16763190 None:intergenic 25.0%
! CAAATATAATGCAATTAAGC+TGG - chr2_4:16763169-16763188 Msa0318230:intron 25.0%
! AATAGAACAAATATGAGAAG+TGG + chr2_4:16763415-16763434 None:intergenic 25.0%
!! AGGAAGATGAAAATTTTGAA+TGG + chr2_4:16763458-16763477 None:intergenic 25.0%
! AGATACTCATGAAGAAAAAT+AGG + chr2_4:16763478-16763497 None:intergenic 25.0%
!! TATTTTTCTTCATGAGTATC+TGG - chr2_4:16763477-16763496 Msa0318230:intron 25.0%
!!! TATTGGTGTATTTTTGTCAT+AGG - chr2_4:16763739-16763758 Msa0318230:intron 25.0%
!!! GTTATTTCTTGGTTTCAATT+AGG - chr2_4:16764012-16764031 Msa0318230:intron 25.0%
!! TTTTTCTTTTTCTTTGACCT+GGG - chr2_4:16764544-16764563 Msa0318230:intron 25.0%
! GATATTTCCAGTCAATATTA+AGG - chr2_4:16764684-16764703 Msa0318230:CDS 25.0%
! TATTTCCAGTCAATATTAAG+GGG - chr2_4:16764686-16764705 Msa0318230:CDS 25.0%
!! ATTGGTTTCTTGAACTAAAT+GGG + chr2_4:16764889-16764908 None:intergenic 25.0%
!!! TATTGGTTTCTTGAACTAAA+TGG + chr2_4:16764890-16764909 None:intergenic 25.0%
! TCAACAGACTATAAAAAACA+AGG + chr2_4:16765143-16765162 None:intergenic 25.0%
ACACATCTAAATAAGAACTG+TGG + chr2_4:16762389-16762408 None:intergenic 30.0%
TGTATCAGTGCATTCATAAT+TGG - chr2_4:16762654-16762673 Msa0318230:exon 30.0%
TAATTGGAACAGTACTTTCA+TGG - chr2_4:16762670-16762689 Msa0318230:CDS 30.0%
TCTTCATATGATCTTCTTAG+TGG + chr2_4:16762746-16762765 None:intergenic 30.0%
AAATAAGTGTTTGCAATTGC+AGG - chr2_4:16762814-16762833 Msa0318230:intron 30.0%
ATTTAGATGAAAACATGCAG+TGG - chr2_4:16762928-16762947 Msa0318230:CDS 30.0%
! TTCATTATTTGGTTGGTACT+TGG + chr2_4:16762978-16762997 None:intergenic 30.0%
ACTAGTTATATAATCCTGTG+TGG + chr2_4:16763209-16763228 None:intergenic 30.0%
AAATGAACTGATATTCAGAG+TGG + chr2_4:16763314-16763333 None:intergenic 30.0%
! ATTTTCTTCAAGAATGTGTG+TGG - chr2_4:16763330-16763349 Msa0318230:intron 30.0%
AGAGGTGGAAAATAAAGTAT+TGG - chr2_4:16763368-16763387 Msa0318230:CDS 30.0%
!! AGTAGTATTTTTGATCTAGC+AGG - chr2_4:16763558-16763577 Msa0318230:intron 30.0%
TATAATATACGCTATCCTTC+AGG - chr2_4:16763783-16763802 Msa0318230:intron 30.0%
!! AATCATGATTGAGTTGGATT+CGG + chr2_4:16763866-16763885 None:intergenic 30.0%
!! TAAGAGTATCATACATGAAG+CGG + chr2_4:16763990-16764009 None:intergenic 30.0%
AAGCTGTAAAGTTCTTAGTT+GGG + chr2_4:16764103-16764122 None:intergenic 30.0%
! CTCTTTCATTTGCTGATATT+AGG - chr2_4:16764310-16764329 Msa0318230:intron 30.0%
! TACATAGGATCGTTTTCAAT+AGG - chr2_4:16764335-16764354 Msa0318230:intron 30.0%
TAAAAACTGAAAGTGGAGAA+AGG + chr2_4:16764407-16764426 None:intergenic 30.0%
!!! TTAAGTGCAACTCTTGTTTT+TGG + chr2_4:16764491-16764510 None:intergenic 30.0%
AAAAGAAAAACAGTTCCAGT+CGG + chr2_4:16764534-16764553 None:intergenic 30.0%
! GTTTTTCTTTTTCTTTGACC+TGG - chr2_4:16764543-16764562 Msa0318230:intron 30.0%
! TTTTCTTTTTCTTTGACCTG+GGG - chr2_4:16764545-16764564 Msa0318230:intron 30.0%
! CATGAGAAAGTTGAAAGTAT+AGG + chr2_4:16764764-16764783 None:intergenic 30.0%
AGTAAACTTGCATGTTCTAT+TGG + chr2_4:16764907-16764926 None:intergenic 30.0%
TAAAAGCCTTGAACAATTAC+AGG - chr2_4:16765021-16765040 Msa0318230:CDS 30.0%
TATGAAACCACGTTAAATCA+AGG + chr2_4:16765335-16765354 None:intergenic 30.0%
TAACGTGGTTTCATAAAGAA+TGG - chr2_4:16765340-16765359 Msa0318230:intron 30.0%
! TACCTGATTTAAGGTAGTCA+GGG + chr2_4:16762470-16762489 None:intergenic 35.0%
! ATACCTGATTTAAGGTAGTC+AGG + chr2_4:16762471-16762490 None:intergenic 35.0%
TTATTACTTACCAGCCATCT+AGG + chr2_4:16762892-16762911 None:intergenic 35.0%
ACCAACCAAATAATGAATGC+AGG - chr2_4:16762981-16763000 Msa0318230:CDS 35.0%
CTTTGCCTGCATTCATTATT+TGG + chr2_4:16762989-16763008 None:intergenic 35.0%
AGATGCTGATATATCTGAAG+AGG - chr2_4:16763059-16763078 Msa0318230:intron 35.0%
GTCTTTATTATTGTGCCTGA+AGG + chr2_4:16763142-16763161 None:intergenic 35.0%
! TTATGGTTTGCCAGCAATTA+GGG - chr2_4:16763508-16763527 Msa0318230:CDS 35.0%
! AAGCATGATGGTGTTAAACT+TGG + chr2_4:16763614-16763633 None:intergenic 35.0%
! TGATATGCAAGAAAGCATGA+TGG + chr2_4:16763626-16763645 None:intergenic 35.0%
!! ATCATGATTGAGTTGGATTC+GGG + chr2_4:16763865-16763884 None:intergenic 35.0%
! TTTTCACAGATTGTGATCAC+AGG - chr2_4:16763890-16763909 Msa0318230:intron 35.0%
AATAAGTTGTTTGTGGCTTC+CGG + chr2_4:16763946-16763965 None:intergenic 35.0%
CTTGGTTTCAATTAGGTATC+TGG - chr2_4:16764019-16764038 Msa0318230:intron 35.0%
TTCAATTAGGTATCTGGATC+AGG - chr2_4:16764025-16764044 Msa0318230:intron 35.0%
GAAGCTGTAAAGTTCTTAGT+TGG + chr2_4:16764104-16764123 None:intergenic 35.0%
TTGATATCCTTGTGAGTAAC+AGG - chr2_4:16764153-16764172 Msa0318230:CDS 35.0%
AATGAAAGAGCAGTGTTACA+TGG + chr2_4:16764300-16764319 None:intergenic 35.0%
TGCTGATATTAGGTCTACAT+AGG - chr2_4:16764320-16764339 Msa0318230:intron 35.0%
! AGGATCGTTTTCAATAGGAA+TGG - chr2_4:16764340-16764359 Msa0318230:intron 35.0%
! GGATCGTTTTCAATAGGAAT+GGG - chr2_4:16764341-16764360 Msa0318230:intron 35.0%
AAAGAAAAACAGTTCCAGTC+GGG + chr2_4:16764533-16764552 None:intergenic 35.0%
TAAATCAACTTCGAATTCGC+CGG - chr2_4:16764595-16764614 Msa0318230:intron 35.0%
! AAGAGGACACATTTTGTAAC+CGG + chr2_4:16764617-16764636 None:intergenic 35.0%
GTGTCCTCTTAGTAAAAAGA+CGG - chr2_4:16764627-16764646 Msa0318230:CDS 35.0%
! TATGCCGTCTTTTTACTAAG+AGG + chr2_4:16764634-16764653 None:intergenic 35.0%
CTTTCAACTTTCTCATGAGT+TGG - chr2_4:16764767-16764786 Msa0318230:intron 35.0%
! TTGTTCAAGGCTTTTACCTT+TGG + chr2_4:16765017-16765036 None:intergenic 35.0%
TTTGCGATTTGTGTAGTGTT+TGG - chr2_4:16765065-16765084 Msa0318230:CDS 35.0%
GGGGATGCATTATACTATTA+AGG + chr2_4:16765265-16765284 None:intergenic 35.0%
AAACCACGTTAAATCAAGGA+GGG + chr2_4:16765331-16765350 None:intergenic 35.0%
TTGGAACAGTACTTTCATGG+AGG - chr2_4:16762673-16762692 Msa0318230:CDS 40.0%
TGGAACAGTACTTTCATGGA+GGG - chr2_4:16762674-16762693 Msa0318230:CDS 40.0%
! TGGAGGGCTTTAGCTATAAT+CGG - chr2_4:16762690-16762709 Msa0318230:CDS 40.0%
GCCTGCATTCATTATTTGGT+TGG + chr2_4:16762985-16763004 None:intergenic 40.0%
! AGGACGCACAAAAGATTTTG+TGG - chr2_4:16763011-16763030 Msa0318230:CDS 40.0%
GCAGCATTACAAATACTTCG+CGG - chr2_4:16763033-16763052 Msa0318230:intron 40.0%
TGAAGAGGCAGAAGAAATTC+AGG - chr2_4:16763074-16763093 Msa0318230:intron 40.0%
AGGTAACTGTGTGTTAGTGT+TGG - chr2_4:16763094-16763113 Msa0318230:intron 40.0%
TATTAAGTGACCTTGCCTTC+AGG - chr2_4:16763124-16763143 Msa0318230:intron 40.0%
TATTATTGTGCCTGAAGGCA+AGG + chr2_4:16763137-16763156 None:intergenic 40.0%
TGAAACAAATCCAGCACCTT+CGG + chr2_4:16763250-16763269 None:intergenic 40.0%
TTCTTCAAGAATGTGTGTGG+TGG - chr2_4:16763333-16763352 Msa0318230:CDS 40.0%
! TCTTCATGAGTATCTGGAGT+AGG - chr2_4:16763483-16763502 Msa0318230:intron 40.0%
! CTTCATGAGTATCTGGAGTA+GGG - chr2_4:16763484-16763503 Msa0318230:intron 40.0%
! CTTATGGTTTGCCAGCAATT+AGG - chr2_4:16763507-16763526 Msa0318230:CDS 40.0%
! TATGGTTTGCCAGCAATTAG+GGG - chr2_4:16763509-16763528 Msa0318230:CDS 40.0%
!! TCATGATTGAGTTGGATTCG+GGG + chr2_4:16763864-16763883 None:intergenic 40.0%
TTAGGTATCTGGATCAGGAT+TGG - chr2_4:16764030-16764049 Msa0318230:intron 40.0%
AGCAGTTGCATTCTATCTCA+AGG - chr2_4:16764072-16764091 Msa0318230:intron 40.0%
TCATGAACCTGTTACTCACA+AGG + chr2_4:16764163-16764182 None:intergenic 40.0%
TGAGTAACAGGTTCATGATG+TGG - chr2_4:16764165-16764184 Msa0318230:CDS 40.0%
ATGTAGCCATACCAATATGC+CGG + chr2_4:16764221-16764240 None:intergenic 40.0%
ACTGAAAGTGGAGAAAGGAT+GGG + chr2_4:16764402-16764421 None:intergenic 40.0%
AACTGAAAGTGGAGAAAGGA+TGG + chr2_4:16764403-16764422 None:intergenic 40.0%
AAGAAAAACAGTTCCAGTCG+GGG + chr2_4:16764532-16764551 None:intergenic 40.0%
GCATAGCAACATTAGTGAAC+TGG - chr2_4:16764719-16764738 Msa0318230:intron 40.0%
GCAACATTAGTGAACTGGTT+TGG - chr2_4:16764724-16764743 Msa0318230:intron 40.0%
!! GGCTTTTACCTTTGGTTTCT+GGG + chr2_4:16765009-16765028 None:intergenic 40.0%
!! AGGCTTTTACCTTTGGTTTC+TGG + chr2_4:16765010-16765029 None:intergenic 40.0%
! GTGTAGTGTTTGGTGGAAAT+TGG - chr2_4:16765075-16765094 Msa0318230:intron 40.0%
GGTGGAAATTGGAACAACAA+AGG - chr2_4:16765086-16765105 Msa0318230:intron 40.0%
AAATCAAGGAGGGAATTCGT+TGG + chr2_4:16765321-16765340 None:intergenic 40.0%
ATTCCCTCCTTGATTTAACG+TGG - chr2_4:16765325-16765344 Msa0318230:intron 40.0%
GAAACCACGTTAAATCAAGG+AGG + chr2_4:16765332-16765351 None:intergenic 40.0%
GCAATTTCTGCTACGAACAC+AGG + chr2_4:16762427-16762446 None:intergenic 45.0%
TGCCCTGACTACCTTAAATC+AGG - chr2_4:16762465-16762484 Msa0318230:three_prime_UTR 45.0%
TCATTCCAGAGTCTCCTAGA+TGG - chr2_4:16762875-16762894 Msa0318230:intron 45.0%
TAATGAATGCAGGCAAAGCG+AGG - chr2_4:16762991-16763010 Msa0318230:CDS 45.0%
!! AATGTGTGTGGTGGACTACT+AGG - chr2_4:16763342-16763361 Msa0318230:CDS 45.0%
! AGTATCTGGAGTAGGGCTTA+TGG - chr2_4:16763491-16763510 Msa0318230:intron 45.0%
! ATGGTTTGCCAGCAATTAGG+GGG - chr2_4:16763510-16763529 Msa0318230:CDS 45.0%
!! CATTGATTCCCCCTAATTGC+TGG + chr2_4:16763521-16763540 None:intergenic 45.0%
CAGCAATTAGGGGGAATCAA+TGG - chr2_4:16763519-16763538 Msa0318230:CDS 45.0%
CATAGGATTTCCTTCTGCGA+CGG - chr2_4:16763756-16763775 Msa0318230:intron 45.0%
ATAGGATTTCCTTCTGCGAC+GGG - chr2_4:16763757-16763776 Msa0318230:intron 45.0%
!! CATGATTGAGTTGGATTCGG+GGG + chr2_4:16763863-16763882 None:intergenic 45.0%
CAGATTGTGATCACAGGTGT+TGG - chr2_4:16763896-16763915 Msa0318230:intron 45.0%
! CCATACCAATATGCCGGTTA+CGG + chr2_4:16764215-16764234 None:intergenic 45.0%
TAGGAATGGGAGCAATTCCA+TGG - chr2_4:16764354-16764373 Msa0318230:intron 45.0%
AGGAATGGGAGCAATTCCAT+GGG - chr2_4:16764355-16764374 Msa0318230:intron 45.0%
CTGAAAGTGGAGAAAGGATG+GGG + chr2_4:16764401-16764420 None:intergenic 45.0%
! TCTTTTTCTTTGACCTGGGG+AGG - chr2_4:16764548-16764567 Msa0318230:intron 45.0%
TGCATAAATAGATCCTCCCC+AGG + chr2_4:16764564-16764583 None:intergenic 45.0%
TCCAGTCAATATTAAGGGGC+AGG - chr2_4:16764690-16764709 Msa0318230:CDS 45.0%
!! TAGTGAACTGGTTTGGTGCA+TGG - chr2_4:16764731-16764750 Msa0318230:intron 45.0%
GATTGCAGCGTAAAGAACGA+AGG + chr2_4:16764951-16764970 None:intergenic 45.0%
GTAGTAGTCCCAGAAACCAA+AGG - chr2_4:16764998-16765017 Msa0318230:intron 45.0%
TGGCTGCCTGTAATTGTTCA+AGG + chr2_4:16765030-16765049 None:intergenic 45.0%
GCAAACTTCCTACGCGTTAA+TGG + chr2_4:16765050-16765069 None:intergenic 45.0%
GCGATTTGTGTAGTGTTTGG+TGG - chr2_4:16765068-16765087 Msa0318230:intron 45.0%
ATTGCGCCAAAAGAACTCCG+AGG - chr2_4:16762442-16762461 Msa0318230:three_prime_UTR 50.0%
! TTAAGGTAGTCAGGGCACCT+CGG + chr2_4:16762462-16762481 None:intergenic 50.0%
GCAACACAGCAGTGGGAATA+AGG + chr2_4:16762840-16762859 None:intergenic 50.0%
TGTATCTGTCACTGCCACAC+AGG - chr2_4:16763192-16763211 Msa0318230:intron 50.0%
AGAACAGCTCGCAAAACCGA+AGG - chr2_4:16763231-16763250 Msa0318230:intron 50.0%
!! TGGTGGACTACTAGGTTGAG+AGG - chr2_4:16763350-16763369 Msa0318230:CDS 50.0%
! TGGACTACTAGGTTGAGAGG+TGG - chr2_4:16763353-16763372 Msa0318230:CDS 50.0%
TAGGATTTCCTTCTGCGACG+GGG - chr2_4:16763758-16763777 Msa0318230:intron 50.0%
ATTATACTCCCCGTCGCAGA+AGG + chr2_4:16763769-16763788 None:intergenic 50.0%
!! TCTGGATCAGGATTGGTTGC+AGG - chr2_4:16764037-16764056 Msa0318230:intron 50.0%
ACAGGTTCATGATGTGGCTG+TGG - chr2_4:16764171-16764190 Msa0318230:CDS 50.0%
CAGGTTCATGATGTGGCTGT+GGG - chr2_4:16764172-16764191 Msa0318230:CDS 50.0%
ACTTGCCGTAACCGGCATAT+TGG - chr2_4:16764207-16764226 Msa0318230:CDS 50.0%
CCGTAACCGGCATATTGGTA+TGG - chr2_4:16764212-16764231 Msa0318230:intron 50.0%
!! GAAAGGATGGGGAAGTACCT+CGG + chr2_4:16764390-16764409 None:intergenic 50.0%
AGCAAATGTTGATCCCCGAC+TGG - chr2_4:16764516-16764535 Msa0318230:intron 50.0%
GCCTGCCCCTTAATATTGAC+TGG + chr2_4:16764694-16764713 None:intergenic 50.0%
GTCAATATTAAGGGGCAGGC+AGG - chr2_4:16764694-16764713 Msa0318230:CDS 50.0%
! CTCATGAGTTGGAGCTCCTA+TGG - chr2_4:16764778-16764797 Msa0318230:intron 50.0%
AAGGAGGGAATTCGTTGGTG+GGG + chr2_4:16765316-16765335 None:intergenic 50.0%
CAAGGAGGGAATTCGTTGGT+GGG + chr2_4:16765317-16765336 None:intergenic 50.0%
TCAAGGAGGGAATTCGTTGG+TGG + chr2_4:16765318-16765337 None:intergenic 50.0%
!! AGGGCACCTCGGAGTTCTTT+TGG + chr2_4:16762451-16762470 None:intergenic 55.0%
!! TCCCACTGCTGTGTTGCTTC+TGG - chr2_4:16762843-16762862 Msa0318230:intron 55.0%
CCCAGAAGCAACACAGCAGT+GGG + chr2_4:16762847-16762866 None:intergenic 55.0%
!! CCCACTGCTGTGTTGCTTCT+GGG - chr2_4:16762844-16762863 Msa0318230:intron 55.0%
ACCCAGAAGCAACACAGCAG+TGG + chr2_4:16762848-16762867 None:intergenic 55.0%
TCCAGAGTCTCCTAGATGGC+TGG - chr2_4:16762879-16762898 Msa0318230:intron 55.0%
ACCAGCCATCTAGGAGACTC+TGG + chr2_4:16762883-16762902 None:intergenic 55.0%
GCAGCCCTCATAGATAGAGC+AGG - chr2_4:16763920-16763939 Msa0318230:CDS 55.0%
CCGGCCTGCTCTATCTATGA+GGG + chr2_4:16763927-16763946 None:intergenic 55.0%
CCCTCATAGATAGAGCAGGC+CGG - chr2_4:16763924-16763943 Msa0318230:CDS 55.0%
TCCGGCCTGCTCTATCTATG+AGG + chr2_4:16763928-16763947 None:intergenic 55.0%
! TCCATGGGTTGTGATGTCCG+AGG - chr2_4:16764370-16764389 Msa0318230:intron 55.0%
ACCTCGGACATCACAACCCA+TGG + chr2_4:16764374-16764393 None:intergenic 55.0%
ACAGGCAGCCATTAACGCGT+AGG - chr2_4:16765039-16765058 Msa0318230:CDS 55.0%
! AGGAGGGAATTCGTTGGTGG+GGG + chr2_4:16765315-16765334 None:intergenic 55.0%
! GCTCGCAAAACCGAAGGTGC+TGG - chr2_4:16763237-16763256 Msa0318230:intron 60.0%
GTCCCAGCACTTGCCGTAAC+CGG - chr2_4:16764199-16764218 Msa0318230:CDS 60.0%
! TGCCGGTTACGGCAAGTGCT+GGG + chr2_4:16764204-16764223 None:intergenic 60.0%
! ATGCCGGTTACGGCAAGTGC+TGG + chr2_4:16764205-16764224 None:intergenic 60.0%
! AGGGAATTCGTTGGTGGGGG+GGG + chr2_4:16765312-16765331 None:intergenic 60.0%
! GAGGGAATTCGTTGGTGGGG+GGG + chr2_4:16765313-16765332 None:intergenic 60.0%
! GGAGGGAATTCGTTGGTGGG+GGG + chr2_4:16765314-16765333 None:intergenic 60.0%
! AATTCGTTGGTGGGGGGGGG+GGG + chr2_4:16765308-16765327 None:intergenic 65.0%
! GAATTCGTTGGTGGGGGGGG+GGG + chr2_4:16765309-16765328 None:intergenic 65.0%
! GGAATTCGTTGGTGGGGGGG+GGG + chr2_4:16765310-16765329 None:intergenic 65.0%
! GGGAATTCGTTGGTGGGGGG+GGG + chr2_4:16765311-16765330 None:intergenic 65.0%
! ATTCGTTGGTGGGGGGGGGG+GGG + chr2_4:16765307-16765326 None:intergenic 70.0%
! TTCGTTGGTGGGGGGGGGGG+GGG + chr2_4:16765306-16765325 None:intergenic 75.0%
!! TCGTTGGTGGGGGGGGGGGG+GGG + chr2_4:16765305-16765324 None:intergenic 80.0%
! TTGGTGGGGGGGGGGGGGGG+GGG + chr2_4:16765302-16765321 None:intergenic 85.0%
!! GTTGGTGGGGGGGGGGGGGG+GGG + chr2_4:16765303-16765322 None:intergenic 85.0%
!! CGTTGGTGGGGGGGGGGGGG+GGG + chr2_4:16765304-16765323 None:intergenic 85.0%
! TGGTGGGGGGGGGGGGGGGG+GGG + chr2_4:16765301-16765320 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765298-16765317 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765299-16765318 None:intergenic 95.0%
! GGTGGGGGGGGGGGGGGGGG+GGG + chr2_4:16765300-16765319 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 16762350 16765372 16762350 ID=Msa0318230;Name=Msa0318230
chr2_4 mRNA 16762350 16765372 16762350 ID=Msa0318230-mRNA-1;Parent=Msa0318230;Name=Msa0318230-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.76|0.64|1|0.84|0.71|14|282|303
chr2_4 exon 16762350 16762403 16762350 ID=Msa0318230-mRNA-1:exon:6271;Parent=Msa0318230-mRNA-1
chr2_4 exon 16762434 16762777 16762434 ID=Msa0318230-mRNA-1:exon:6270;Parent=Msa0318230-mRNA-1
chr2_4 exon 16762923 16763037 16762923 ID=Msa0318230-mRNA-1:exon:6269;Parent=Msa0318230-mRNA-1
chr2_4 exon 16763331 16763390 16763331 ID=Msa0318230-mRNA-1:exon:6268;Parent=Msa0318230-mRNA-1
chr2_4 exon 16763494 16763547 16763494 ID=Msa0318230-mRNA-1:exon:6267;Parent=Msa0318230-mRNA-1
chr2_4 exon 16763629 16763688 16763629 ID=Msa0318230-mRNA-1:exon:6266;Parent=Msa0318230-mRNA-1
chr2_4 exon 16763918 16763961 16763918 ID=Msa0318230-mRNA-1:exon:6265;Parent=Msa0318230-mRNA-1
chr2_4 exon 16764143 16764229 16764143 ID=Msa0318230-mRNA-1:exon:6264;Parent=Msa0318230-mRNA-1
chr2_4 exon 16764424 16764508 16764424 ID=Msa0318230-mRNA-1:exon:6263;Parent=Msa0318230-mRNA-1
chr2_4 exon 16764627 16764719 16764627 ID=Msa0318230-mRNA-1:exon:6262;Parent=Msa0318230-mRNA-1
chr2_4 exon 16764822 16764886 16764822 ID=Msa0318230-mRNA-1:exon:6261;Parent=Msa0318230-mRNA-1
chr2_4 exon 16765011 16765085 16765011 ID=Msa0318230-mRNA-1:exon:6260;Parent=Msa0318230-mRNA-1
chr2_4 exon 16765236 16765282 16765236 ID=Msa0318230-mRNA-1:exon:6259;Parent=Msa0318230-mRNA-1
chr2_4 exon 16765362 16765372 16765362 ID=Msa0318230-mRNA-1:exon:6258;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16765362 16765372 16765362 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16765236 16765282 16765236 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16765011 16765085 16765011 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16764822 16764886 16764822 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16764627 16764719 16764627 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16764424 16764508 16764424 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16764143 16764229 16764143 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16763918 16763961 16763918 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16763629 16763688 16763629 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16763494 16763547 16763494 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16763331 16763390 16763331 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16762923 16763037 16762923 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 CDS 16762662 16762777 16762662 ID=Msa0318230-mRNA-1:cds;Parent=Msa0318230-mRNA-1
chr2_4 three_prime_UTR 16762434 16762661 16762434 ID=Msa0318230-mRNA-1:three_prime_utr;Parent=Msa0318230-mRNA-1
chr2_4 three_prime_UTR 16762350 16762403 16762350 ID=Msa0318230-mRNA-1:three_prime_utr;Parent=Msa0318230-mRNA-1
Gene Sequence

>Msa0318230

ATGAGGTTGAGAAATTGCGCCAAAAGAACTCCGAGGTGCCCTGACTACCTTAAATCAGTTCATGATTGTTACTGCTGTATCAGTGCATTCATAATTGGAACAGTACTTTCATGGAGGGCTTTAGCTATAATCGGCCTTATTCCCACTGCTGTGTTGCTTCTGGGTCTGTTTTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAGCGAGGACGCACAAAAGATTTTGTGGCAGCATTACAAATACTTCGCGGTAAAGATGCTGATATATCTGAAGAGGCAGAAGAAATTCAGGATTATATAACTAGTTTAGAACAGCTCGCAAAACCGAAGGTGCTGGATTTGTTTCAAAGAAGATATTTACGCTCACTCACAGTATTATCTGGAGTAGGGCTTATGGTTTGCCAGCAATTAGGGGGAATCAATGGTGTTTGCTTTTATACTAGTAGTATTTTTGATCTAGCAGGATTTCCTTCTGCGACGGGGAGTATAATATACGCTATCCTTCAGGTATCTGGATCAGGATTGGTTGCAGGATGCATATTTACAGCAGTTGCATTCTATCTCAAGGTTCATGATGTGGCTGTGGGAGCAGTCCCAGCACTTGCCGTAACCGGCATATTGGTCTACATAGGATCGTTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGATATTTCCAGTCAATATTAAGGGGCAGGCAGGAAGCATAGCAACATTAGTGAACTGGTTTGGTGCATGGTTATGCTCCTATACTTTCAACTTTCTCATGAGTTGGAGCTCCTATGGTACCTTCGTTCTTTACGCTGCAATCAATGCACTGTCTATATTATTTATAGTTGTAGTAGTCCCAGAAACCAAAGGTAAAAGCCTTGAACAATTACAGGCAGCCATTAACGCGTAG

Protein sequence

>Msa0318230

MRLRNCAKRTPRCPDYLKSVHDCYCCISAFIIGTVLSWRALAIIGLIPTAVLLLGLFFIPESPRWLAKRGRTKDFVAALQILRGKDADISEEAEEIQDYITSLEQLAKPKVLDLFQRRYLRSLTVLSGVGLMVCQQLGGINGVCFYTSSIFDLAGFPSATGSIIYAILQVSGSGLVAGCIFTAVAFYLKVHDVAVGAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGQAGSIATLVNWFGAWLCSYTFNFLMSWSSYGTFVLYAAINALSILFIVVVVPETKGKSLEQLQAAINA*