AlfalfaGEDB | Msa0404690

M. sativa cultivar zhongmu-4 / Msa0404690

KEGG: K16297
GO: GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00450.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404690	XP_013459243.1	90.086	464	18	1	26	489	22	457	0.0	857

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404690	sp\|Q93Y09\|SCP45_ARATH	60.394	457	150	2	33	486	30	458	0.0	586

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404690	A0A072UTV7	90.086	464	18	1	26	489	22	457	0.0	857

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0404690	0.811581	6.516032e-51	-8.615850e-47
Msa0004340	Msa0404690	0.823731	1.183113e-53	-8.615850e-47
Msa0004350	Msa0404690	0.818358	2.043849e-52	-8.615850e-47
Msa0004610	Msa0404690	0.814506	1.488008e-51	-8.615850e-47
Msa0005690	Msa0404690	0.823631	1.248100e-53	-8.615850e-47
Msa0006050	Msa0404690	0.845996	2.864960e-59	-8.615850e-47
Msa0006700	Msa0404690	0.887663	1.170409e-72	-8.615850e-47
Msa0008330	Msa0404690	0.808689	2.737262e-50	-8.615850e-47
Msa0008850	Msa0404690	0.872488	3.059574e-67	-8.615850e-47
Msa0012780	Msa0404690	-0.823556	1.299556e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404690	MtrunA17_Chr3g0094811	90.086	464	18	1	26	489	22	457	0.0	857
Msa0404690	MtrunA17_Chr2g0304931	62.391	460	139	5	31	487	35	463	0.0	590
Msa0404690	MtrunA17_Chr7g0221551	59.737	457	153	2	33	486	29	457	0.0	578
Msa0404690	MtrunA17_Chr3g0131731	57.816	467	162	6	30	489	26	464	0.0	570
Msa0404690	MtrunA17_Chr8g0385871	56.182	461	169	3	31	486	30	462	0.0	554
Msa0404690	MtrunA17_Chr1g0204191	52.516	457	162	7	31	486	88	490	7.90e-161	465
Msa0404690	MtrunA17_Chr3g0126051	43.129	473	225	6	25	486	24	463	4.54e-137	404
Msa0404690	MtrunA17_Chr3g0126031	43.750	464	217	7	33	486	27	456	6.70e-135	397
Msa0404690	MtrunA17_Chr5g0431301	44.111	467	215	8	33	486	28	461	1.38e-130	387
Msa0404690	MtrunA17_Chr1g0165811	61.314	274	77	2	26	299	22	266	5.14e-120	352

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404690	AT1G28110.1	60.394	457	150	2	33	486	30	458	0.0	586
Msa0404690	AT1G28110.2	60.394	457	150	2	33	486	30	458	0.0	586
Msa0404690	AT2G33530.1	58.568	461	158	4	31	486	30	462	0.0	569
Msa0404690	AT1G43780.1	45.064	466	213	10	33	486	36	470	4.96e-131	389
Msa0404690	AT5G42240.1	43.923	469	221	8	29	486	27	464	1.39e-129	385
Msa0404690	AT5G42230.1	42.857	476	232	7	21	486	15	460	2.14e-128	381
Msa0404690	AT5G42230.2	42.857	476	232	7	21	486	15	460	2.14e-128	381
Msa0404690	AT2G12480.3	43.162	468	220	7	29	486	26	457	2.74e-128	381
Msa0404690	AT2G12480.4	42.275	466	203	7	29	486	26	433	4.24e-122	364
Msa0404690	AT2G12480.1	41.631	466	204	7	29	486	26	431	4.57e-120	359

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Find 101 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGTCTGTAGAGTCA+TGG	0.579830	3_2:-37164813	Msa0404690:CDS
AAAAGCAACTTCAATCTCAA+GGG	0.591189	3_2:-37162707	Msa0404690:CDS
AAACATTCACATATTTGAAT+AGG	0.352371	3_2:-37161735	Msa0404690:CDS
AAACTGTAGTGTATTCAGTC+TGG	0.496440	3_2:-37159329	Msa0404690:three_prime_UTR
AAAGACCGTGTACCAAGCAA+CGG	0.670704	3_2:+37160194	None:intergenic
AAATAGGCTAGTGTCAATGG+AGG	0.690398	3_2:-37162143	Msa0404690:intron
AACAATGAGTTCTTTATCAC+AGG	0.423884	3_2:-37162859	Msa0404690:CDS
AACAATGAGTTGTGCAAGTT+GGG	0.394486	3_2:+37162736	None:intergenic
AACCACCAACACCAACATCA+CGG	0.621192	3_2:+37164065	None:intergenic
AACTCCAAGACTCGAGACAT+TGG	0.524758	3_2:-37164846	Msa0404690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAATACTATGTGTGAACG+TGG	+	chr3_2:37159132-37159151	None:intergenic	30.0%
CTATGTATCAGTGTCATATT+CGG	+	chr3_2:37159571-37159590	None:intergenic	30.0%
ATCCAGAAATTACAAGACAA+AGG	+	chr3_2:37159969-37159988	None:intergenic	30.0%
TTATTAAAAAACTCGGTCAC+TGG	+	chr3_2:37160014-37160033	None:intergenic	30.0%
CCATTCAAACCAACTAAAAA+TGG	-	chr3_2:37160171-37160190	Msa0404690:CDS	30.0%
AATGATTACAGTTGGAACAA+AGG	-	chr3_2:37160204-37160223	Msa0404690:CDS	30.0%
GAATGATTCATTAGTAGAGT+AGG	+	chr3_2:37160377-37160396	None:intergenic	30.0%
CAAAATAGCATGTGAATGAA+TGG	-	chr3_2:37160448-37160467	Msa0404690:intron	30.0%
AACAATGAGTTCTTTATCAC+AGG	-	chr3_2:37161051-37161070	Msa0404690:intron	30.0%
ACAATGAGTTCTTTATCACA+GGG	-	chr3_2:37161052-37161071	Msa0404690:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	37159060	37164872	37159060	ID=Msa0404690;Name=Msa0404690
chr3_2	mRNA	37159060	37164872	37159060	ID=Msa0404690-mRNA-1;Parent=Msa0404690;Name=Msa0404690-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0.75\|0.76\|0.92\|1\|1\|13\|314\|489
chr3_2	exon	37159060	37159523	37159060	ID=Msa0404690-mRNA-1:exon:7430;Parent=Msa0404690-mRNA-1
chr3_2	exon	37160121	37160238	37160121	ID=Msa0404690-mRNA-1:exon:7429;Parent=Msa0404690-mRNA-1
chr3_2	exon	37160329	37160421	37160329	ID=Msa0404690-mRNA-1:exon:7428;Parent=Msa0404690-mRNA-1
chr3_2	exon	37161670	37161794	37161670	ID=Msa0404690-mRNA-1:exon:7427;Parent=Msa0404690-mRNA-1
chr3_2	exon	37161883	37161969	37161883	ID=Msa0404690-mRNA-1:exon:7426;Parent=Msa0404690-mRNA-1
chr3_2	exon	37162144	37162338	37162144	ID=Msa0404690-mRNA-1:exon:7425;Parent=Msa0404690-mRNA-1
chr3_2	exon	37162700	37162770	37162700	ID=Msa0404690-mRNA-1:exon:7424;Parent=Msa0404690-mRNA-1
chr3_2	exon	37162845	37162937	37162845	ID=Msa0404690-mRNA-1:exon:7423;Parent=Msa0404690-mRNA-1
chr3_2	exon	37163508	37163603	37163508	ID=Msa0404690-mRNA-1:exon:7422;Parent=Msa0404690-mRNA-1
chr3_2	exon	37163707	37163808	37163707	ID=Msa0404690-mRNA-1:exon:7421;Parent=Msa0404690-mRNA-1
chr3_2	exon	37164035	37164118	37164035	ID=Msa0404690-mRNA-1:exon:7420;Parent=Msa0404690-mRNA-1
chr3_2	exon	37164401	37164583	37164401	ID=Msa0404690-mRNA-1:exon:7419;Parent=Msa0404690-mRNA-1
chr3_2	exon	37164800	37164872	37164800	ID=Msa0404690-mRNA-1:exon:7418;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37164800	37164872	37164800	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37164401	37164583	37164401	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37164035	37164118	37164035	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37163707	37163808	37163707	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37163508	37163603	37163508	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37162845	37162937	37162845	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37162700	37162770	37162700	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37162144	37162338	37162144	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37161883	37161969	37161883	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37161670	37161794	37161670	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37160329	37160421	37160329	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37160121	37160238	37160121	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	CDS	37159374	37159523	37159374	ID=Msa0404690-mRNA-1:cds;Parent=Msa0404690-mRNA-1
chr3_2	three_prime_UTR	37159060	37159373	37159060	ID=Msa0404690-mRNA-1:three_prime_utr;Parent=Msa0404690-mRNA-1

Gene Sequence

>Msa0404690

ATGAAACTCCAAGACTCGAGACATTGGGGTCAGCATCAAAACTTGTCTGTAGAGTCATGGACCCAACAACCACGAGTAAATTCCTTTTTAGAAGTTGATAAGATAAGTAGTTTACCTCAGCAGCCAAAAGTAGGATTTCAACAATATGCAGGTTACATTAAAGTTGATGAAATGCAGAAAAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCAGCTTCCAAGCCAGTAGTGCTTTGGTTAAATGGAGTGGTTGTTTTGCAACTGGGTTTTAATTTAGGCCGTGATGTTGGTGTTGGTGGTTGTTTGTTAATGGTATTGAAGGTAGGTCTTGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTGGAGCATGGTCCATTCAAACCAACTAAAAATGGTCTTATTAAAAATGATTACAGTTGGAACAAAGTGGCAAACATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCCTACTCTACTAATGAATCATTCTACGACTCCGTGAACGATGATTTGACAGCAAGGGATAATCTTGTTTTTTTACAACATTGGTTCACTAAATTCTCAGAATACAAAAACAATGAGTTCTTTATCACAGGGGAGAGCTATGCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAAAGCAACTTCAATCTCAAGGGAATTGCAATAGGGAATCCTCTTCTGGAATTCAACACAGATTTCAACTCTAGAGCTGAGTATCTCTGGTCTCATGGACTGATATCAGATTCAACCTATGATTCCTTCACAAAAATATGCAACTTTTCACAAATTAGAAGACAATATGCAAGTGGCGCACTTACTACCGTTTGCGCAAGAGTAAATAGGCTAGTGTCAATGGAGATTAGTAGATATATTGATTCGTATGATGTTACTCTTGATGTGTGTCTATCAACAGTAGAACAACAAGCATATGTGCTAACTCAACTGCAAGAGGGAGAGAAGATAGATGTTTGTGTGGAAGATGAAACATTCACATATTTGAATAGGAAAGAAGTGCAAGAAGCTCTTCATGCTAAGCTTGTAGGGATCACCACATGGACCACTTGTAGTGGAGTTCTCAAATATGACATGCAAAATTTAGAGATTCCAACCATATCTATTCTGGGAAAACTTGTTAAGTCAGGTGTAAGAGTTCTTGTATTCAGTGGAGATCAAGATTCAGTATTACCGTTGCTTGGTACACGGTCTTTAGTAAATGGATTAGCCAAAGACTTCGGTTTGAACACAACAGAGTCCTATAGAACTTGGTTTAATGGAAGACAGGTAGCTGGATGGACACAAGTATATGGTGACATGTTATCCTTTGCAACCATAAGAGGAGCAGCTCATGAGGCTCCATTTTCACAACCAGGGAGATCATTGGTGCTGCTAAAGGCATTTTTGGAAGGAAAATCACTTCCAACTATTCTTTGA

Protein sequence

>Msa0404690

MKLQDSRHWGQHQNLSVESWTQQPRVNSFLEVDKISSLPQQPKVGFQQYAGYIKVDEMQKRALFYYFVEAEVEPASKPVVLWLNGVVVLQLGFNLGRDVGVGGCLLMVLKVGLGPGCSSVGAGAFVEHGPFKPTKNGLIKNDYSWNKVANMLYLESPAGVGFSYSTNESFYDSVNDDLTARDNLVFLQHWFTKFSEYKNNEFFITGESYAGHYVPQLAQLIVQTKSNFNLKGIAIGNPLLEFNTDFNSRAEYLWSHGLISDSTYDSFTKICNFSQIRRQYASGALTTVCARVNRLVSMEISRYIDSYDVTLDVCLSTVEQQAYVLTQLQEGEKIDVCVEDETFTYLNRKEVQEALHAKLVGITTWTTCSGVLKYDMQNLEIPTISILGKLVKSGVRVLVFSGDQDSVLPLLGTRSLVNGLAKDFGLNTTESYRTWFNGRQVAGWTQVYGDMLSFATIRGAAHEAPFSQPGRSLVLLKAFLEGKSLPTIL*