AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0318260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318260 MtrunA17_Chr7g0259221 79.743 311 32 4 33 330 184 476 9.41e-160 456
Msa0318260 MtrunA17_Chr7g0259471 76.849 311 41 4 33 330 182 474 2.12e-154 442
Msa0318260 MtrunA17_Chr4g0066581 47.910 311 132 4 33 330 194 487 1.22e-88 275
Msa0318260 MtrunA17_Chr2g0286721 48.232 311 131 4 33 330 191 484 8.06e-88 272
Msa0318260 MtrunA17_Chr7g0273281 41.590 327 159 4 23 334 191 500 1.51e-77 246
Msa0318260 MtrunA17_Chr1g0155221 40.635 315 146 6 33 326 191 485 2.20e-69 225
Msa0318260 MtrunA17_Chr8g0373181 39.571 326 160 8 21 326 174 482 2.75e-66 216
Msa0318260 MtrunA17_Chr8g0373191 37.464 347 169 8 11 331 135 459 2.40e-62 206
Msa0318260 MtrunA17_Chr7g0273261 46.040 202 90 2 129 330 56 238 5.72e-58 188
Msa0318260 MtrunA17_Chr7g0221631 90.123 81 6 1 216 296 39 117 2.22e-44 148
Msa0318260 MtrunA17_Chr5g0404181 51.020 98 48 0 229 326 31 128 3.08e-31 114
Msa0318260 MtrunA17_Chr4g0034681 27.879 330 178 8 40 331 186 493 5.26e-30 120
Msa0318260 MtrunA17_Chr4g0021771 30.449 312 169 10 40 326 211 499 7.54e-30 119
Msa0318260 MtrunA17_Chr4g0032021 28.829 333 181 11 31 331 248 556 1.27e-28 116
Msa0318260 MtrunA17_Chr1g0213631 28.875 329 192 8 41 350 143 448 1.58e-28 115
Msa0318260 MtrunA17_Chr3g0144361 28.313 332 176 8 40 331 184 493 1.85e-28 115
Msa0318260 MtrunA17_Chr4g0039651 26.994 326 185 9 31 327 197 498 2.17e-28 115
Msa0318260 MtrunA17_Chr1g0213611 29.904 311 172 8 41 326 236 525 2.74e-28 115
Msa0318260 MtrunA17_Chr6g0457781 27.381 336 192 10 21 330 234 543 3.30e-27 112
Msa0318260 MtrunA17_Chr7g0259451 92.000 50 4 0 245 294 1 50 5.08e-27 101
Msa0318260 MtrunA17_Chr7g0250881 27.879 330 198 9 21 330 194 503 1.14e-26 110
Msa0318260 MtrunA17_Chr2g0282031 28.616 318 167 9 40 326 209 497 2.67e-26 109
Msa0318260 MtrunA17_Chr7g0214451 29.394 330 183 9 41 348 191 492 7.29e-26 108
Msa0318260 MtrunA17_Chr4g0036021 27.607 326 173 11 42 328 185 486 5.23e-24 102
Msa0318260 MtrunA17_Chr3g0115781 26.710 307 183 8 42 326 200 486 2.48e-23 100
Msa0318260 MtrunA17_Chr6g0486021 24.012 329 214 8 21 333 182 490 4.77e-23 99.8
Msa0318260 MtrunA17_Chr3g0121674 27.832 309 181 8 45 332 2 289 5.58e-23 97.4
Msa0318260 MtrunA17_Chr3g0115741 28.333 300 185 10 42 325 201 486 7.28e-23 99.4
Msa0318260 MtrunA17_Chr3g0115731 26.970 330 200 9 16 325 154 462 1.79e-22 98.2
Msa0318260 MtrunA17_Chr3g0115751 28.076 317 182 11 42 334 203 497 1.92e-22 98.2
Msa0318260 MtrunA17_Chr5g0432581 27.089 347 186 12 31 333 163 486 4.71e-22 97.1
Msa0318260 MtrunA17_Chr4g0004821 27.124 306 186 7 42 333 194 476 1.64e-21 95.1
Msa0318260 MtrunA17_Chr1g0173341 69.444 72 5 1 146 217 67 121 1.86e-21 88.6
Msa0318260 MtrunA17_Chr6g0485661 27.950 322 177 10 30 321 206 502 3.33e-21 94.7
Msa0318260 MtrunA17_Chr3g0115721 27.213 305 182 8 42 325 198 483 1.25e-20 92.8
Msa0318260 MtrunA17_Chr8g0373531 26.023 342 194 9 31 332 163 485 2.93e-20 91.7
Msa0318260 MtrunA17_Chr4g0065324 25.974 308 196 8 42 334 205 495 6.14e-20 90.9
Msa0318260 MtrunA17_Chr5g0404191 53.623 69 32 0 33 101 192 260 4.74e-19 86.3
Msa0318260 MtrunA17_Chr3g0115711 26.073 303 187 8 42 325 198 482 1.44e-18 86.7
Msa0318260 MtrunA17_Chr4g0065311 26.333 300 187 8 42 325 197 478 2.07e-18 86.3
Msa0318260 MtrunA17_Chr8g0390521 27.302 315 181 10 40 326 174 468 2.88e-18 85.9
Msa0318260 MtrunA17_Chr5g0420841 24.675 308 203 7 42 334 200 493 2.38e-17 83.2
Msa0318260 MtrunA17_Chr8g0390261 25.418 299 192 9 42 325 203 485 3.38e-17 82.8
Msa0318260 MtrunA17_Chr8g0390141 26.333 300 188 9 42 325 203 485 4.70e-17 82.0
Msa0318260 MtrunA17_Chr4g0065351 25.753 299 190 7 42 325 40 321 5.77e-17 81.3
Msa0318260 MtrunA17_Chr6g0486681 24.850 334 193 11 42 350 203 503 8.13e-16 78.6
Msa0318260 MtrunA17_Chr6g0486671 24.850 334 193 11 42 350 203 503 8.13e-16 78.6
Msa0318260 MtrunA17_Chr3g0078971 24.000 300 197 8 42 326 201 484 8.19e-16 78.6
Msa0318260 MtrunA17_Chr3g0085971 24.920 313 196 9 42 334 200 493 1.06e-15 78.2
Msa0318260 MtrunA17_Chr2g0303731 39.623 106 61 2 229 332 452 556 1.09e-15 78.2
Msa0318260 MtrunA17_Chr8g0376631 36.937 111 61 2 229 334 451 557 1.18e-15 78.2
Msa0318260 MtrunA17_Chr3g0078791 24.585 301 174 9 42 325 146 410 1.54e-15 77.4
Msa0318260 MtrunA17_Chr1g0205681 23.779 307 203 8 42 333 202 492 2.22e-15 77.0
Msa0318260 MtrunA17_Chr8g0376611 35.780 109 61 2 229 332 382 486 4.36e-14 73.2
Msa0318260 MtrunA17_Chr3g0128171 26.557 305 183 10 42 325 154 438 4.42e-14 73.2
Msa0318260 MtrunA17_Chr5g0434251 34.862 109 62 2 229 332 38 142 5.70e-14 68.9
Msa0318260 MtrunA17_Chr5g0403831 23.733 375 207 12 18 347 162 502 1.28e-13 71.6
Msa0318260 MtrunA17_Chr1g0205671 22.876 306 207 7 42 333 201 491 1.73e-13 71.2
Msa0318260 MtrunA17_Chr2g0290181 33.654 104 68 1 229 331 455 558 1.91e-13 71.2
Msa0318260 MtrunA17_Chr1g0164851 24.503 302 194 6 42 326 200 484 3.30e-13 70.5
Msa0318260 MtrunA17_Chr3g0078991 24.092 303 194 9 42 326 201 485 3.44e-13 70.5
Msa0318260 MtrunA17_Chr5g0434261 36.111 108 68 1 229 335 212 319 4.09e-13 69.3
Msa0318260 MtrunA17_Chr8g0376601 36.111 108 68 1 229 335 450 557 4.95e-13 70.1
Msa0318260 MtrunA17_Chr1g0164871 24.159 327 210 7 42 347 200 509 5.14e-13 70.1
Msa0318260 MtrunA17_Chr3g0128081 26.351 296 177 10 51 325 210 485 6.93e-13 69.7
Msa0318260 MtrunA17_Chr5g0445601 24.000 300 194 8 42 325 203 484 1.14e-12 68.9
Msa0318260 MtrunA17_Chr5g0417611 24.359 312 199 11 42 334 202 495 1.63e-12 68.6
Msa0318260 MtrunA17_Chr5g0394341 20.712 309 210 6 42 333 201 491 2.01e-12 68.2
Msa0318260 MtrunA17_Chr7g0257631 24.333 300 193 8 42 325 237 518 1.09e-11 65.9
Msa0318260 MtrunA17_Chr1g0205691 21.338 314 202 6 42 333 201 491 1.17e-11 65.9
Msa0318260 MtrunA17_Chr3g0119401 25.316 316 180 12 42 332 251 535 2.46e-11 64.7
Msa0318260 MtrunA17_Chr4g0048051 25.890 309 184 10 40 325 199 485 2.69e-11 64.7
Msa0318260 MtrunA17_Chr4g0048411 23.171 328 213 9 42 349 201 509 6.35e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318260 AT2G48020.2 58.385 322 105 4 21 330 158 462 2.43e-120 355
Msa0318260 AT2G48020.1 58.385 322 105 4 21 330 158 462 2.43e-120 355
Msa0318260 AT5G18840.1 48.562 313 131 4 33 332 186 481 3.34e-89 276
Msa0318260 AT3G05150.2 45.588 340 151 7 11 333 151 473 1.79e-86 269
Msa0318260 AT3G05150.1 45.536 336 149 7 11 329 151 469 1.79e-85 266
Msa0318260 AT3G05150.3 45.536 336 149 7 11 329 151 469 1.79e-85 266
Msa0318260 AT1G54730.2 41.493 335 163 5 11 329 148 465 6.19e-82 257
Msa0318260 AT3G05160.3 39.936 313 151 4 34 330 115 406 5.56e-73 232
Msa0318260 AT3G05160.2 39.936 313 151 4 34 330 115 406 5.56e-73 232
Msa0318260 AT3G05155.1 40.850 306 152 5 32 326 168 455 1.42e-72 233
Msa0318260 AT3G05160.1 39.936 313 151 4 34 330 164 455 2.28e-72 232
Msa0318260 AT1G54730.5 39.104 335 150 5 11 329 148 444 2.74e-71 229
Msa0318260 AT3G05165.3 39.297 313 153 4 34 330 173 464 1.05e-70 228
Msa0318260 AT3G05165.2 39.297 313 153 4 34 330 173 464 1.05e-70 228
Msa0318260 AT3G05165.1 39.297 313 153 4 34 330 173 464 1.05e-70 228
Msa0318260 AT1G54730.3 41.667 300 142 5 11 294 148 430 1.04e-69 224
Msa0318260 AT4G04760.3 40.064 312 155 3 34 330 115 409 1.95e-69 223
Msa0318260 AT4G04750.1 38.462 325 168 4 31 340 175 482 3.28e-69 224
Msa0318260 AT4G04750.2 38.462 325 168 4 31 340 175 482 3.28e-69 224
Msa0318260 AT4G04750.3 38.462 325 168 4 31 340 219 526 5.51e-69 225
Msa0318260 AT4G04760.1 40.064 312 155 3 34 330 174 468 1.52e-68 223
Msa0318260 AT3G20460.1 36.810 326 171 5 21 331 183 488 5.83e-66 216
Msa0318260 AT5G27360.2 38.636 308 160 4 37 332 77 367 1.17e-65 212
Msa0318260 AT5G27360.5 38.636 308 160 4 37 332 77 367 1.17e-65 212
Msa0318260 AT5G27350.1 38.961 308 159 4 37 332 177 467 3.79e-65 214
Msa0318260 AT1G08920.2 38.558 319 165 7 29 330 169 473 4.20e-65 214
Msa0318260 AT1G19450.1 40.060 332 152 8 21 327 176 485 4.43e-65 214
Msa0318260 AT5G27360.1 38.636 308 160 4 37 332 181 471 8.22e-65 213
Msa0318260 AT1G08920.1 37.931 319 160 6 29 330 169 466 1.34e-64 212
Msa0318260 AT3G05400.2 41.447 304 145 7 37 326 152 436 1.38e-64 211
Msa0318260 AT5G27360.3 38.636 308 160 4 37 332 229 519 1.91e-64 213
Msa0318260 AT3G05400.1 41.447 304 145 7 37 326 172 456 1.93e-64 211
Msa0318260 AT1G75220.1 39.450 327 161 6 21 327 175 484 9.90e-64 210
Msa0318260 AT1G08930.1 36.000 325 160 5 29 331 195 493 4.05e-63 209
Msa0318260 AT1G08930.2 36.000 325 160 5 29 331 195 493 4.05e-63 209
Msa0318260 AT1G08900.5 34.125 337 189 4 11 331 99 418 1.02e-62 206
Msa0318260 AT1G08900.1 34.462 325 184 3 19 331 153 460 1.99e-62 206
Msa0318260 AT1G08900.2 34.462 325 184 3 19 331 153 460 1.99e-62 206
Msa0318260 AT1G08900.3 34.125 337 189 4 11 331 133 452 2.22e-62 206
Msa0318260 AT1G08890.1 35.161 310 172 3 34 331 170 462 1.35e-61 204
Msa0318260 AT4G04760.2 38.462 312 157 4 34 330 174 465 9.32e-61 202
Msa0318260 AT2G48020.4 50.439 228 84 4 21 236 158 368 8.34e-60 197
Msa0318260 AT1G54730.4 39.000 300 129 5 11 294 148 409 3.99e-59 196
Msa0318260 AT3G05165.6 37.234 282 140 4 34 299 173 433 5.43e-56 191
Msa0318260 AT1G08920.3 36.749 283 141 6 29 294 169 430 1.26e-51 177
Msa0318260 AT1G54730.9 38.346 266 131 5 11 260 148 396 2.82e-49 171
Msa0318260 AT1G54730.7 38.346 266 131 5 11 260 148 396 2.82e-49 171
Msa0318260 AT1G08900.4 34.028 288 161 3 19 294 153 423 5.60e-49 170
Msa0318260 AT3G05165.4 35.985 264 140 3 34 285 173 419 1.01e-47 167
Msa0318260 AT3G05165.5 35.985 264 140 3 34 285 173 419 1.01e-47 167
Msa0318260 AT2G48020.3 52.071 169 69 3 21 177 158 326 1.09e-44 157
Msa0318260 AT1G54730.8 35.338 266 118 5 11 260 148 375 3.82e-39 143
Msa0318260 AT1G54730.11 39.891 183 94 4 11 177 148 330 1.51e-32 124
Msa0318260 AT3G05155.2 41.026 156 81 3 32 177 168 322 2.11e-31 121
Msa0318260 AT5G27360.4 32.743 226 123 4 37 250 181 389 7.75e-30 119
Msa0318260 AT5G59250.1 29.341 334 180 12 30 331 249 558 3.47e-29 118
Msa0318260 AT2G43330.1 28.743 334 189 11 27 335 176 485 1.32e-27 113
Msa0318260 AT5G17010.1 29.967 307 161 10 51 327 218 500 6.11e-27 111
Msa0318260 AT5G17010.3 29.967 307 161 10 51 327 218 500 6.11e-27 111
Msa0318260 AT5G17010.4 29.967 307 161 10 51 327 218 500 6.11e-27 111
Msa0318260 AT2G20780.2 27.928 333 181 11 40 348 153 450 1.67e-26 110
Msa0318260 AT3G03090.1 30.408 319 170 11 38 327 205 500 2.71e-26 109
Msa0318260 AT1G54730.10 39.157 166 85 4 11 160 148 313 3.23e-26 107
Msa0318260 AT1G54730.6 39.157 166 85 4 11 160 148 313 3.23e-26 107
Msa0318260 AT2G20780.1 27.928 333 181 11 40 348 211 508 4.05e-26 109
Msa0318260 AT5G16150.2 27.083 336 193 10 21 330 234 543 3.33e-25 106
Msa0318260 AT5G16150.1 27.083 336 193 10 21 330 234 543 3.33e-25 106
Msa0318260 AT5G16150.3 27.083 336 193 10 21 330 234 543 3.33e-25 106
Msa0318260 AT2G16130.1 26.205 332 175 12 40 327 182 487 1.51e-22 99.0
Msa0318260 AT2G16120.1 25.836 329 178 11 40 326 182 486 3.86e-22 97.8
Msa0318260 AT4G36670.1 25.915 328 188 9 40 331 173 481 6.03e-22 97.1
Msa0318260 AT3G18830.1 25.387 323 186 9 40 326 192 495 1.28e-21 96.3
Msa0318260 AT1G67300.2 25.298 336 196 11 24 332 186 493 1.36e-21 95.9
Msa0318260 AT1G67300.1 24.702 336 197 10 24 332 186 492 8.13e-21 93.6
Msa0318260 AT1G67300.3 24.702 336 197 10 24 332 186 492 8.13e-21 93.6
Msa0318260 AT1G79820.2 25.000 308 182 7 42 329 212 490 3.19e-20 92.0
Msa0318260 AT1G79820.1 25.000 308 182 7 42 329 212 490 3.19e-20 92.0
Msa0318260 AT2G18480.1 23.988 321 192 6 40 326 178 480 5.63e-18 85.5
Msa0318260 AT1G67300.6 26.022 269 160 7 24 274 186 433 6.20e-18 85.1
Msa0318260 AT1G67300.7 26.022 269 160 7 24 274 186 433 6.20e-18 85.1
Msa0318260 AT1G50310.2 24.179 335 200 9 42 346 59 369 3.88e-17 82.0
Msa0318260 AT1G67300.4 26.154 260 153 7 24 265 186 424 6.68e-17 81.6
Msa0318260 AT1G67300.5 26.154 260 153 7 24 265 186 424 6.68e-17 81.6
Msa0318260 AT1G50310.1 24.179 335 200 9 42 346 202 512 9.38e-17 81.6
Msa0318260 AT3G19940.1 23.826 298 199 8 42 325 202 485 1.48e-16 81.3
Msa0318260 AT1G79820.4 25.200 250 143 5 42 274 212 434 3.05e-16 80.1
Msa0318260 AT1G30220.1 37.963 108 58 2 230 332 456 559 4.47e-16 79.7
Msa0318260 AT1G05030.2 25.641 312 185 11 42 333 185 469 1.08e-15 78.6
Msa0318260 AT1G05030.1 25.641 312 185 11 42 333 237 521 1.57e-15 78.2
Msa0318260 AT2G35740.1 41.414 99 57 1 229 326 458 556 1.79e-15 77.8
Msa0318260 AT1G11260.1 25.733 307 183 11 42 325 201 485 1.90e-15 77.8
Msa0318260 AT1G34580.2 27.597 308 180 10 42 325 149 437 8.80e-15 75.5
Msa0318260 AT4G16480.2 37.374 99 61 1 229 326 459 557 1.02e-14 75.5
Msa0318260 AT4G16480.3 37.374 99 61 1 229 326 459 557 1.02e-14 75.5
Msa0318260 AT4G16480.1 37.374 99 61 1 229 326 459 557 1.02e-14 75.5
Msa0318260 AT1G34580.1 27.597 308 180 10 42 325 199 487 1.06e-14 75.5
Msa0318260 AT4G02050.2 24.540 326 209 7 42 350 203 508 2.94e-14 74.3
Msa0318260 AT4G02050.1 24.540 326 209 7 42 350 203 508 2.94e-14 74.3
Msa0318260 AT5G26340.1 21.975 314 200 7 42 333 202 492 7.86e-14 72.8
Msa0318260 AT3G19930.1 23.000 300 205 7 40 326 198 484 2.47e-13 71.2
Msa0318260 AT3G19930.2 23.000 300 205 7 40 326 198 484 2.47e-13 71.2
Msa0318260 AT4G21480.1 25.083 303 192 10 42 326 199 484 3.98e-13 70.5
Msa0318260 AT1G07340.1 26.014 296 177 9 51 325 207 481 1.10e-12 69.3
Msa0318260 AT5G23270.1 23.473 311 206 7 40 334 201 495 1.10e-11 66.2
Msa0318260 AT5G26250.1 26.537 309 183 11 42 329 198 483 1.77e-11 65.5

Find 86 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCACTGCTGTGTTGCTTC+TGG 0.130660 2_4:-16784624 Msa0318260:CDS
CTTGGTTTCAATTAGGTATC+TGG 0.196736 2_4:-16783450 Msa0318260:intron
CTTATGGTTTGCCAGCAATT+AGG 0.210158 2_4:-16783961 Msa0318260:CDS
GATATTTCCAGTCAATATTA+AGG 0.214954 2_4:-16782786 Msa0318260:CDS
TTATGGTTTGCCAGCAATTA+GGG 0.246534 2_4:-16783960 Msa0318260:CDS
AGGGCACCTCGGAGTTCTTT+TGG 0.268637 2_4:+16785018 Msa0318240:intron
GTGTAGTGTTTGGTGGAAAT+TGG 0.274589 2_4:-16782396 Msa0318260:CDS
CCCACTGCTGTGTTGCTTCT+GGG 0.289747 2_4:-16784623 Msa0318260:CDS
GCAACACAGCAGTGGGAATA+AGG 0.301338 2_4:+16784630 Msa0318240:intron
AATAAGTTGTTTGTGGCTTC+CGG 0.307304 2_4:+16783527 Msa0318240:intron
TAAAAGCCTTGAACAATTAC+AGG 0.318980 2_4:-16782449 Msa0318260:CDS
TGTATCAGTGCATTCATAAT+TGG 0.321197 2_4:-16784813 Msa0318260:CDS
TAATTGGAACAGTACTTTCA+TGG 0.363139 2_4:-16784797 Msa0318260:CDS
AGTATCTGGAGTAGGGCTTA+TGG 0.367600 2_4:-16783977 Msa0318260:intron
GTCCCAGCACTTGCCGTAAC+CGG 0.369576 2_4:-16783270 Msa0318260:CDS
TTCAATTAGGTATCTGGATC+AGG 0.372298 2_4:-16783444 Msa0318260:intron
TGAAGAGGCAGAAGAAATTC+AGG 0.379612 2_4:-16784393 Msa0318260:intron
ACTTGCCGTAACCGGCATAT+TGG 0.393259 2_4:-16783262 Msa0318260:intron
TATAATATACGCTATCCTTC+AGG 0.395137 2_4:-16783686 Msa0318260:intron
ATACCTGATTTAAGGTAGTC+AGG 0.404425 2_4:+16784998 Msa0318240:intron
CGCAAACTTCCTACGCGTAA+TGG 0.408188 2_4:+16782423 Msa0318240:intron
CTCATGAGTTGGAGCTCCTA+TGG 0.410624 2_4:-16782692 Msa0318260:intron
TTATTACTTACCAGCCATCT+AGG 0.415487 2_4:+16784578 Msa0318240:intron
TGGCTGCCTGTAATTGTTCA+AGG 0.421101 2_4:+16782443 Msa0318240:intron
TGGAGGGCTTTAGCTATAAT+CGG 0.425528 2_4:-16784777 Msa0318260:intron
TGCCCTGACTACCTTAAATC+AGG 0.427867 2_4:-16785001 Msa0318260:intron
ATGCCGGTTACGGCAAGTGC+TGG 0.431492 2_4:+16783267 Msa0318240:intron
TGAAACAAATCCAGCACCTT+CGG 0.432421 2_4:+16784221 Msa0318240:intron
TCATTCCAGAGTCTCCTAGA+TGG 0.435503 2_4:-16784592 Msa0318260:CDS
CTTTCAACTTTCTCATGAGT+TGG 0.435734 2_4:-16782703 Msa0318260:CDS
TCTGGATCAGGATTGGTTGC+AGG 0.437259 2_4:-16783432 Msa0318260:CDS
GCATAGCAACATTAGTGAAC+TGG 0.437404 2_4:-16782751 Msa0318260:CDS
ATATTTCCAGTCAATATTAA+GGG 0.442648 2_4:-16782785 Msa0318260:CDS
GTCAATATTAAGGGGCAGGC+AGG 0.454849 2_4:-16782776 Msa0318260:CDS
ATAGGATTTCCTTCTGCGAC+GGG 0.459192 2_4:-16783712 Msa0318260:intron
GCAACATTAGTGAACTGGTT+TGG 0.459624 2_4:-16782746 Msa0318260:CDS
TCCGGCCTGCTCTATCTATG+AGG 0.461836 2_4:+16783545 Msa0318240:intron
CATGAGAAAGTTGAAAGTAT+AGG 0.464787 2_4:+16782709 Msa0318240:intron
CCATACCAATATGCCGGTTA+CGG 0.465306 2_4:+16783257 Msa0318240:intron
TTTGCGATTTGTGTAGTGTT+TGG 0.466010 2_4:-16782406 Msa0318260:CDS
AGCTCGCAAACCGAAGGTGC+TGG 0.468475 2_4:-16784231 Msa0318260:CDS
TCCAGTCAATATTAAGGGGC+AGG 0.473585 2_4:-16782780 Msa0318260:CDS
GCCTGCCCCTTAATATTGAC+TGG 0.493013 2_4:+16782779 Msa0318240:intron
GCGATTTGTGTAGTGTTTGG+TGG 0.502161 2_4:-16782403 Msa0318260:CDS
TTAGGTATCTGGATCAGGAT+TGG 0.517795 2_4:-16783439 Msa0318260:intron
TCCAGAGTCTCCTAGATGGC+TGG 0.523060 2_4:-16784588 Msa0318260:intron
CAGATTGTGATCACAGGTGT+TGG 0.523824 2_4:-16783574 Msa0318260:CDS
TGCCGGTTACGGCAAGTGCT+GGG 0.527544 2_4:+16783268 Msa0318240:intron
TAGGAATGGGAGCAATTCCA+TGG 0.529632 2_4:-16783115 Msa0318260:CDS
TGGAACAGTACTTTCATGGA+GGG 0.532101 2_4:-16784793 Msa0318260:CDS
ACCAGCCATCTAGGAGACTC+TGG 0.543206 2_4:+16784587 Msa0318240:intron
CATAGGATTTCCTTCTGCGA+CGG 0.543429 2_4:-16783713 Msa0318260:intron
TGCTGATATTAGGTCTACAT+AGG 0.553729 2_4:-16783149 Msa0318260:intron
CCGGCCTGCTCTATCTATGA+GGG 0.555047 2_4:+16783546 Msa0318240:intron
TAGTGAACTGGTTTGGTGCA+TGG 0.558886 2_4:-16782739 Msa0318260:CDS
ACCTCGGACATCACAACCCA+TGG 0.560460 2_4:+16783098 Msa0318240:intron
TACCTGATTTAAGGTAGTCA+GGG 0.563340 2_4:+16784999 Msa0318240:intron
ATTATACTCCCCGTCGCAGA+AGG 0.566503 2_4:+16783703 Msa0318240:intron
ACAGGTTCATGATGTGGCTG+TGG 0.570506 2_4:-16783298 Msa0318260:intron
AGCAGTTGCATTCTATCTCA+AGG 0.573615 2_4:-16783397 Msa0318260:intron
AGATGCTGATATATCTGAAG+AGG 0.576120 2_4:-16784408 Msa0318260:CDS
ACCCAGAAGCAACACAGCAG+TGG 0.576369 2_4:+16784622 Msa0318240:intron
CCCAGAAGCAACACAGCAGT+GGG 0.578353 2_4:+16784623 Msa0318240:intron
TAAGAGTATCATACATGAAG+CGG 0.578669 2_4:+16783482 Msa0318240:intron
GCAATTTCTGCTACGAACAC+AGG 0.587269 2_4:+16785042 Msa0318240:intron
TATTTCCAGTCAATATTAAG+GGG 0.587860 2_4:-16782784 Msa0318260:CDS
ATGTAGCCATACCAATATGC+CGG 0.588017 2_4:+16783251 Msa0318240:intron
GCAGCCCTCATAGATAGAGC+AGG 0.590573 2_4:-16783550 Msa0318260:CDS
ATGGTTTGCCAGCAATTAGG+GGG 0.608563 2_4:-16783958 Msa0318260:CDS
CAGGTTCATGATGTGGCTGT+GGG 0.612693 2_4:-16783297 Msa0318260:CDS
CCCTCATAGATAGAGCAGGC+CGG 0.622479 2_4:-16783546 Msa0318260:CDS
TAATGAATGCAGGCAAAGCG+AGG 0.623838 2_4:-16784476 Msa0318260:intron
TATGGTTTGCCAGCAATTAG+GGG 0.634878 2_4:-16783959 Msa0318260:CDS
TAGAACAGCTCGCAAACCGA+AGG 0.637213 2_4:-16784237 Msa0318260:intron
GCAGCATTACAAATACTTCG+CGG 0.650248 2_4:-16784434 Msa0318260:CDS
GTAGTAGTCCCAGAAACCAA+AGG 0.657750 2_4:-16782472 Msa0318260:CDS
TTGGAACAGTACTTTCATGG+AGG 0.660408 2_4:-16784794 Msa0318260:CDS
TAGGATTTCCTTCTGCGACG+GGG 0.661364 2_4:-16783711 Msa0318260:CDS
TGAGTAACAGGTTCATGATG+TGG 0.666123 2_4:-16783304 Msa0318260:intron
TTAAGGTAGTCAGGGCACCT+CGG 0.669152 2_4:+16785007 Msa0318240:intron
AGGAATGGGAGCAATTCCAT+GGG 0.675398 2_4:-16783114 Msa0318260:CDS
TACAGGCAGCCATTACGCGT+AGG 0.704776 2_4:-16782432 Msa0318260:CDS
GATTGCAGCGTAAAGAACGA+AGG 0.710685 2_4:+16782522 Msa0318240:intron
TGGTGGAAATTGGAACAACA+AGG 0.722722 2_4:-16782386 Msa0318260:CDS
TCCATGGGTTGTGATGTCCG+AGG 0.731376 2_4:-16783099 Msa0318260:intron
ATTGCGCCAAAAGAACTCCG+AGG 0.763517 2_4:-16785024 Msa0318260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATTAGATTTTTTTAG+CGG - chr2_4:16782294-16782313 Msa0318260:three_prime_UTR 10.0%
!!! ATCAATTTTACATAAATATT+AGG + chr2_4:16784229-16784248 Msa0318240:intron 10.0%
!!! TTTTTGATTATAATTTGTAT+TGG - chr2_4:16785287-16785306 Msa0318260:intron 10.0%
!!! TTTATTTTGTTTTGGTTTAT+TGG - chr2_4:16783813-16783832 Msa0318260:intron 15.0%
!! ATTAACCAATAATTAATTCT+TGG - chr2_4:16783910-16783929 Msa0318260:intron 15.0%
!!! ATTTTCCAAGAATTAATTAT+TGG + chr2_4:16783918-16783937 Msa0318240:intron 15.0%
!! AATAAAAAATAAGTTGTTTG+TGG + chr2_4:16784043-16784062 Msa0318240:intron 15.0%
!!! TACTTTTATTTATGATTTTC+AGG - chr2_4:16785013-16785032 Msa0318260:CDS 15.0%
!! CAAATTATAATCAAAAATCA+TGG + chr2_4:16785284-16785303 Msa0318240:intron 15.0%
!! TCTTAATCTAAATAAGTCTT+TGG - chr2_4:16782364-16782383 Msa0318260:exon 20.0%
!! TTAGATGTGTTACATATATA+AGG - chr2_4:16782493-16782512 Msa0318260:CDS 20.0%
!! AGAAAAATATACCTGATTTA+AGG + chr2_4:16782573-16782592 Msa0318240:intron 20.0%
!!! CTCAGATTTTTATTTTGTTT+TGG - chr2_4:16783805-16783824 Msa0318260:intron 20.0%
!! ATTTAAAAATAAGAACCTGA+AGG + chr2_4:16783892-16783911 Msa0318240:intron 20.0%
!! AATAAAAATCATGATTGAGT+TGG + chr2_4:16783962-16783981 Msa0318240:intron 20.0%
!!! ATACTCTTATTGTTATTTCT+TGG - chr2_4:16784092-16784111 Msa0318260:intron 20.0%
!! TTGATATTAAAAACTGAAAG+TGG + chr2_4:16784505-16784524 Msa0318240:intron 20.0%
!! ATATTTCCAGTCAATATTAA+GGG - chr2_4:16784775-16784794 Msa0318260:intron 20.0%
!! AATGTATTAGTATTTACCAT+AGG + chr2_4:16784887-16784906 Msa0318240:intron 20.0%
!! TGATTATCGTATAATAATTC+TGG + chr2_4:16784952-16784971 Msa0318240:intron 20.0%
! AATGAATAGTTAAATGCAAC+AGG + chr2_4:16782333-16782352 Msa0318240:intron 25.0%
! CAGCTTAATTGCATTATATT+TGG + chr2_4:16783264-16783283 Msa0318240:intron 25.0%
! CAAATATAATGCAATTAAGC+TGG - chr2_4:16783262-16783281 Msa0318260:intron 25.0%
! AATAGAACAAATATGAGAAG+TGG + chr2_4:16783507-16783526 Msa0318240:intron 25.0%
!! AGGAAGATGAAAATTTTGAA+TGG + chr2_4:16783550-16783569 Msa0318240:intron 25.0%
! AGATACTCATGAAGAAAAAT+AGG + chr2_4:16783570-16783589 Msa0318240:intron 25.0%
!! TATTTTTCTTCATGAGTATC+TGG - chr2_4:16783569-16783588 Msa0318260:CDS 25.0%
!!! TATTGGTGTATTTTTGTCAT+AGG - chr2_4:16783830-16783849 Msa0318260:intron 25.0%
!!! GTTATTTCTTGGTTTCAATT+AGG - chr2_4:16784103-16784122 Msa0318260:intron 25.0%
!! TTTTTCTTTTTCTTTGACCT+GGG - chr2_4:16784634-16784653 Msa0318260:CDS 25.0%
! GATATTTCCAGTCAATATTA+AGG - chr2_4:16784774-16784793 Msa0318260:intron 25.0%
! TATTTCCAGTCAATATTAAG+GGG - chr2_4:16784776-16784795 Msa0318260:intron 25.0%
!! ATTGGTTTCTTGAACTAAAT+GGG + chr2_4:16784979-16784998 Msa0318240:intron 25.0%
!!! TATTGGTTTCTTGAACTAAA+TGG + chr2_4:16784980-16784999 Msa0318240:intron 25.0%
! CAACAGACTATAAAAAAACA+AGG + chr2_4:16785231-16785250 Msa0318240:intron 25.0%
CCTCATATAGCAAAATTGAA+TGG + chr2_4:16782431-16782450 Msa0318240:intron 30.0%
!! CCATTCAATTTTGCTATATG+AGG - chr2_4:16782428-16782447 Msa0318260:CDS 30.0%
!! AATTTTGCTATATGAGGTTG+AGG - chr2_4:16782434-16782453 Msa0318260:CDS 30.0%
TATATGAGGTTGAGGTAAAT+GGG - chr2_4:16782442-16782461 Msa0318260:CDS 30.0%
ACACATCTAAATAAGAACTG+TGG + chr2_4:16782483-16782502 Msa0318240:intron 30.0%
TGTATCAGTGCATTCATAAT+TGG - chr2_4:16782747-16782766 Msa0318260:CDS 30.0%
TAATTGGAACAGTACTTTCA+TGG - chr2_4:16782763-16782782 Msa0318260:CDS 30.0%
TCTTCATATGATCTTCTTAG+TGG + chr2_4:16782839-16782858 Msa0318240:intron 30.0%
AAATAAGTGTTTGCAATTGC+AGG - chr2_4:16782907-16782926 Msa0318260:intron 30.0%
ATTTAGATGAAAACATGCAG+TGG - chr2_4:16783021-16783040 Msa0318260:intron 30.0%
! TTCATTATTTGGTTGGTACT+TGG + chr2_4:16783071-16783090 Msa0318240:intron 30.0%
ACTAGTTATATAATCCTGTG+TGG + chr2_4:16783302-16783321 Msa0318240:intron 30.0%
AAATGAACTGATATTCAGAG+TGG + chr2_4:16783406-16783425 Msa0318240:intron 30.0%
! ATTTTCTTCAAGAATGTGTG+TGG - chr2_4:16783422-16783441 Msa0318260:CDS 30.0%
AGAGGTGGAAAATAAAGTAT+TGG - chr2_4:16783460-16783479 Msa0318260:intron 30.0%
!! AGTAGTATTTTTGATCTAGC+AGG - chr2_4:16783649-16783668 Msa0318260:intron 30.0%
TATAATATACGCTATCCTTC+AGG - chr2_4:16783874-16783893 Msa0318260:intron 30.0%
!! AATCATGATTGAGTTGGATT+CGG + chr2_4:16783956-16783975 Msa0318240:intron 30.0%
!! TAAGAGTATCATACATGAAG+CGG + chr2_4:16784081-16784100 Msa0318240:intron 30.0%
AAGCTGTAAAGTTCTTAGTT+GGG + chr2_4:16784194-16784213 Msa0318240:intron 30.0%
! CTCTTTCATTTGCTGATATT+AGG - chr2_4:16784401-16784420 Msa0318260:CDS 30.0%
! TACATAGGATCGTTTTCAAT+AGG - chr2_4:16784426-16784445 Msa0318260:CDS 30.0%
TAAAAACTGAAAGTGGAGAA+AGG + chr2_4:16784498-16784517 Msa0318240:intron 30.0%
!!! TTAAGTGCAACTCTTGTTTT+TGG + chr2_4:16784581-16784600 Msa0318240:intron 30.0%
AAAAGAAAAACAGTTCCAGT+CGG + chr2_4:16784624-16784643 Msa0318240:intron 30.0%
! GTTTTTCTTTTTCTTTGACC+TGG - chr2_4:16784633-16784652 Msa0318260:CDS 30.0%
! TTTTCTTTTTCTTTGACCTG+GGG - chr2_4:16784635-16784654 Msa0318260:intron 30.0%
! CATGAGAAAGTTGAAAGTAT+AGG + chr2_4:16784854-16784873 Msa0318240:intron 30.0%
AGTAAACTTGCATGTTCTAT+TGG + chr2_4:16784997-16785016 Msa0318240:intron 30.0%
TAAAAGCCTTGAACAATTAC+AGG - chr2_4:16785111-16785130 Msa0318260:intron 30.0%
CTATATGAGGTTGAGGTAAA+TGG - chr2_4:16782441-16782460 Msa0318260:CDS 35.0%
! TACCTGATTTAAGGTAGTCA+GGG + chr2_4:16782564-16782583 Msa0318240:intron 35.0%
! ATACCTGATTTAAGGTAGTC+AGG + chr2_4:16782565-16782584 Msa0318240:intron 35.0%
TTATTACTTACCAGCCATCT+AGG + chr2_4:16782985-16783004 Msa0318240:intron 35.0%
ACCAACCAAATAATGAATGC+AGG - chr2_4:16783074-16783093 Msa0318260:intron 35.0%
CTTTGCCTGCATTCATTATT+TGG + chr2_4:16783082-16783101 Msa0318240:intron 35.0%
AGATGCTGATATATCTGAAG+AGG - chr2_4:16783152-16783171 Msa0318260:intron 35.0%
GTCTTTATTATTGTGCCTGA+AGG + chr2_4:16783235-16783254 Msa0318240:intron 35.0%
! TTATGGTTTGCCAGCAATTA+GGG - chr2_4:16783600-16783619 Msa0318260:intron 35.0%
! AAGCATGATGGTGTTAAACT+TGG + chr2_4:16783705-16783724 Msa0318240:intron 35.0%
! TGATATGCAAGAAAGCATGA+TGG + chr2_4:16783717-16783736 Msa0318240:intron 35.0%
!! ATCATGATTGAGTTGGATTC+GGG + chr2_4:16783955-16783974 Msa0318240:intron 35.0%
! TTTTCACAGATTGTGATCAC+AGG - chr2_4:16783980-16783999 Msa0318260:intron 35.0%
AATAAGTTGTTTGTGGCTTC+CGG + chr2_4:16784036-16784055 Msa0318240:intron 35.0%
CTTGGTTTCAATTAGGTATC+TGG - chr2_4:16784110-16784129 Msa0318260:intron 35.0%
TTCAATTAGGTATCTGGATC+AGG - chr2_4:16784116-16784135 Msa0318260:intron 35.0%
GAAGCTGTAAAGTTCTTAGT+TGG + chr2_4:16784195-16784214 Msa0318240:intron 35.0%
TTGATATCCTTGTGAGTAAC+AGG - chr2_4:16784244-16784263 Msa0318260:intron 35.0%
AATGAAAGAGCAGTGTTACA+TGG + chr2_4:16784391-16784410 Msa0318240:intron 35.0%
TGCTGATATTAGGTCTACAT+AGG - chr2_4:16784411-16784430 Msa0318260:CDS 35.0%
! AGGATCGTTTTCAATAGGAA+TGG - chr2_4:16784431-16784450 Msa0318260:CDS 35.0%
! GGATCGTTTTCAATAGGAAT+GGG - chr2_4:16784432-16784451 Msa0318260:CDS 35.0%
AAAGAAAAACAGTTCCAGTC+GGG + chr2_4:16784623-16784642 Msa0318240:intron 35.0%
TAAATCAACTTCGAATTCGC+CGG - chr2_4:16784685-16784704 Msa0318260:intron 35.0%
! AAGAGGACACATTTTGTAAC+CGG + chr2_4:16784707-16784726 Msa0318240:intron 35.0%
GTGTCCTCTTAGTAAAAAGA+CGG - chr2_4:16784717-16784736 Msa0318260:intron 35.0%
! TATGCCGTCTTTTTACTAAG+AGG + chr2_4:16784724-16784743 Msa0318240:intron 35.0%
CTTTCAACTTTCTCATGAGT+TGG - chr2_4:16784857-16784876 Msa0318260:intron 35.0%
! TTGTTCAAGGCTTTTACCTT+TGG + chr2_4:16785107-16785126 Msa0318240:intron 35.0%
TTTGCGATTTGTGTAGTGTT+TGG - chr2_4:16785154-16785173 Msa0318260:intron 35.0%
TTGGAACAGTACTTTCATGG+AGG - chr2_4:16782766-16782785 Msa0318260:CDS 40.0%
TGGAACAGTACTTTCATGGA+GGG - chr2_4:16782767-16782786 Msa0318260:CDS 40.0%
! TGGAGGGCTTTAGCTATAAT+CGG - chr2_4:16782783-16782802 Msa0318260:CDS 40.0%
GCCTGCATTCATTATTTGGT+TGG + chr2_4:16783078-16783097 Msa0318240:intron 40.0%
! AGGACGCACAAAAGATTTTG+TGG - chr2_4:16783104-16783123 Msa0318260:CDS 40.0%
GCAGCATTACAAATACTTCG+CGG - chr2_4:16783126-16783145 Msa0318260:CDS 40.0%
TGAAGAGGCAGAAGAAATTC+AGG - chr2_4:16783167-16783186 Msa0318260:intron 40.0%
AGGTAACTGTGTGTTAGTGT+TGG - chr2_4:16783187-16783206 Msa0318260:intron 40.0%
TATTAAGTGACCTTGCCTTC+AGG - chr2_4:16783217-16783236 Msa0318260:intron 40.0%
TATTATTGTGCCTGAAGGCA+AGG + chr2_4:16783230-16783249 Msa0318240:intron 40.0%
TGAAACAAATCCAGCACCTT+CGG + chr2_4:16783342-16783361 Msa0318240:intron 40.0%
TTCTTCAAGAATGTGTGTGG+TGG - chr2_4:16783425-16783444 Msa0318260:CDS 40.0%
! TCTTCATGAGTATCTGGAGT+AGG - chr2_4:16783575-16783594 Msa0318260:intron 40.0%
! CTTCATGAGTATCTGGAGTA+GGG - chr2_4:16783576-16783595 Msa0318260:intron 40.0%
! CTTATGGTTTGCCAGCAATT+AGG - chr2_4:16783599-16783618 Msa0318260:intron 40.0%
! TATGGTTTGCCAGCAATTAG+GGG - chr2_4:16783601-16783620 Msa0318260:intron 40.0%
!! TCATGATTGAGTTGGATTCG+GGG + chr2_4:16783954-16783973 Msa0318240:intron 40.0%
TTAGGTATCTGGATCAGGAT+TGG - chr2_4:16784121-16784140 Msa0318260:intron 40.0%
AGCAGTTGCATTCTATCTCA+AGG - chr2_4:16784163-16784182 Msa0318260:intron 40.0%
TCATGAACCTGTTACTCACA+AGG + chr2_4:16784254-16784273 Msa0318240:intron 40.0%
TGAGTAACAGGTTCATGATG+TGG - chr2_4:16784256-16784275 Msa0318260:intron 40.0%
ATGTAGCCATACCAATATGC+CGG + chr2_4:16784312-16784331 Msa0318240:intron 40.0%
ACTGAAAGTGGAGAAAGGAT+GGG + chr2_4:16784493-16784512 Msa0318240:intron 40.0%
AACTGAAAGTGGAGAAAGGA+TGG + chr2_4:16784494-16784513 Msa0318240:intron 40.0%
AAGAAAAACAGTTCCAGTCG+GGG + chr2_4:16784622-16784641 Msa0318240:intron 40.0%
GCATAGCAACATTAGTGAAC+TGG - chr2_4:16784809-16784828 Msa0318260:CDS 40.0%
GCAACATTAGTGAACTGGTT+TGG - chr2_4:16784814-16784833 Msa0318260:CDS 40.0%
!! GGCTTTTACCTTTGGTTTCT+GGG + chr2_4:16785099-16785118 Msa0318240:intron 40.0%
!! AGGCTTTTACCTTTGGTTTC+TGG + chr2_4:16785100-16785119 Msa0318240:intron 40.0%
! GTGTAGTGTTTGGTGGAAAT+TGG - chr2_4:16785164-16785183 Msa0318260:intron 40.0%
TGGTGGAAATTGGAACAACA+AGG - chr2_4:16785174-16785193 Msa0318260:intron 40.0%
GCAATTTCTGCTACGAACAC+AGG + chr2_4:16782521-16782540 Msa0318240:intron 45.0%
TGCCCTGACTACCTTAAATC+AGG - chr2_4:16782559-16782578 Msa0318260:intron 45.0%
TCATTCCAGAGTCTCCTAGA+TGG - chr2_4:16782968-16782987 Msa0318260:intron 45.0%
TAATGAATGCAGGCAAAGCG+AGG - chr2_4:16783084-16783103 Msa0318260:intron 45.0%
!! AATGTGTGTGGTGGACTACT+AGG - chr2_4:16783434-16783453 Msa0318260:CDS 45.0%
! AGTATCTGGAGTAGGGCTTA+TGG - chr2_4:16783583-16783602 Msa0318260:intron 45.0%
! ATGGTTTGCCAGCAATTAGG+GGG - chr2_4:16783602-16783621 Msa0318260:intron 45.0%
!! CATTGATTCCCCCTAATTGC+TGG + chr2_4:16783613-16783632 Msa0318240:intron 45.0%
CATAGGATTTCCTTCTGCGA+CGG - chr2_4:16783847-16783866 Msa0318260:intron 45.0%
ATAGGATTTCCTTCTGCGAC+GGG - chr2_4:16783848-16783867 Msa0318260:intron 45.0%
CAGATTGTGATCACAGGTGT+TGG - chr2_4:16783986-16784005 Msa0318260:intron 45.0%
! CCATACCAATATGCCGGTTA+CGG + chr2_4:16784306-16784325 Msa0318240:intron 45.0%
TAGGAATGGGAGCAATTCCA+TGG - chr2_4:16784445-16784464 Msa0318260:CDS 45.0%
AGGAATGGGAGCAATTCCAT+GGG - chr2_4:16784446-16784465 Msa0318260:CDS 45.0%
CTGAAAGTGGAGAAAGGATG+GGG + chr2_4:16784492-16784511 Msa0318240:intron 45.0%
! TCTTTTTCTTTGACCTGGGG+AGG - chr2_4:16784638-16784657 Msa0318260:intron 45.0%
TGCATAAATAGATCCTCCCC+AGG + chr2_4:16784654-16784673 Msa0318240:intron 45.0%
TCCAGTCAATATTAAGGGGC+AGG - chr2_4:16784780-16784799 Msa0318260:CDS 45.0%
!! TAGTGAACTGGTTTGGTGCA+TGG - chr2_4:16784821-16784840 Msa0318260:CDS 45.0%
GATTGCAGCGTAAAGAACGA+AGG + chr2_4:16785041-16785060 Msa0318240:intron 45.0%
GTAGTAGTCCCAGAAACCAA+AGG - chr2_4:16785088-16785107 Msa0318260:intron 45.0%
TGGCTGCCTGTAATTGTTCA+AGG + chr2_4:16785120-16785139 Msa0318240:intron 45.0%
GCGATTTGTGTAGTGTTTGG+TGG - chr2_4:16785157-16785176 Msa0318260:intron 45.0%
!!! AAAAATCTAATATATTTTTT+TGG + chr2_4:16782290-16782309 Msa0318240:intron 5.0%
! GCTTTTGTTGACGCAGCTTG+AGG + chr2_4:16782409-16782428 Msa0318240:intron 50.0%
ATTGCGCCAAAAGAACTCCG+AGG - chr2_4:16782536-16782555 Msa0318260:intron 50.0%
! TTAAGGTAGTCAGGGCACCT+CGG + chr2_4:16782556-16782575 Msa0318240:intron 50.0%
GCAACACAGCAGTGGGAATA+AGG + chr2_4:16782933-16782952 Msa0318240:intron 50.0%
TGTATCTGTCACTGCCACAC+AGG - chr2_4:16783285-16783304 Msa0318260:CDS 50.0%
TAGAACAGCTCGCAAACCGA+AGG - chr2_4:16783323-16783342 Msa0318260:intron 50.0%
!! TGGTGGACTACTAGGTTGAG+AGG - chr2_4:16783442-16783461 Msa0318260:intron 50.0%
! TGGACTACTAGGTTGAGAGG+TGG - chr2_4:16783445-16783464 Msa0318260:intron 50.0%
TAGGATTTCCTTCTGCGACG+GGG - chr2_4:16783849-16783868 Msa0318260:intron 50.0%
ATTATACTCCCCGTCGCAGA+AGG + chr2_4:16783860-16783879 Msa0318240:intron 50.0%
!! TCTGGATCAGGATTGGTTGC+AGG - chr2_4:16784128-16784147 Msa0318260:intron 50.0%
ACAGGTTCATGATGTGGCTG+TGG - chr2_4:16784262-16784281 Msa0318260:intron 50.0%
CAGGTTCATGATGTGGCTGT+GGG - chr2_4:16784263-16784282 Msa0318260:intron 50.0%
ACTTGCCGTAACCGGCATAT+TGG - chr2_4:16784298-16784317 Msa0318260:intron 50.0%
CCGTAACCGGCATATTGGTA+TGG - chr2_4:16784303-16784322 Msa0318260:intron 50.0%
!! GAAAGGATGGGGAAGTACCT+CGG + chr2_4:16784481-16784500 Msa0318240:intron 50.0%
AGCAAATGTTGATCCCCGAC+TGG - chr2_4:16784606-16784625 Msa0318260:CDS 50.0%
GCCTGCCCCTTAATATTGAC+TGG + chr2_4:16784784-16784803 Msa0318240:intron 50.0%
GTCAATATTAAGGGGCAGGC+AGG - chr2_4:16784784-16784803 Msa0318260:CDS 50.0%
! CTCATGAGTTGGAGCTCCTA+TGG - chr2_4:16784868-16784887 Msa0318260:intron 50.0%
CGCAAACTTCCTACGCGTAA+TGG + chr2_4:16785140-16785159 Msa0318240:intron 50.0%
!! AGGGCACCTCGGAGTTCTTT+TGG + chr2_4:16782545-16782564 Msa0318240:intron 55.0%
!! TCCCACTGCTGTGTTGCTTC+TGG - chr2_4:16782936-16782955 Msa0318260:intron 55.0%
CCCAGAAGCAACACAGCAGT+GGG + chr2_4:16782940-16782959 Msa0318240:intron 55.0%
!! CCCACTGCTGTGTTGCTTCT+GGG - chr2_4:16782937-16782956 Msa0318260:intron 55.0%
ACCCAGAAGCAACACAGCAG+TGG + chr2_4:16782941-16782960 Msa0318240:intron 55.0%
TCCAGAGTCTCCTAGATGGC+TGG - chr2_4:16782972-16782991 Msa0318260:intron 55.0%
ACCAGCCATCTAGGAGACTC+TGG + chr2_4:16782976-16782995 Msa0318240:intron 55.0%
GCAGCCCTCATAGATAGAGC+AGG - chr2_4:16784010-16784029 Msa0318260:intron 55.0%
CCGGCCTGCTCTATCTATGA+GGG + chr2_4:16784017-16784036 Msa0318240:intron 55.0%
CCCTCATAGATAGAGCAGGC+CGG - chr2_4:16784014-16784033 Msa0318260:intron 55.0%
TCCGGCCTGCTCTATCTATG+AGG + chr2_4:16784018-16784037 Msa0318240:intron 55.0%
! TCCATGGGTTGTGATGTCCG+AGG - chr2_4:16784461-16784480 Msa0318260:CDS 55.0%
ACCTCGGACATCACAACCCA+TGG + chr2_4:16784465-16784484 Msa0318240:intron 55.0%
TACAGGCAGCCATTACGCGT+AGG - chr2_4:16785128-16785147 Msa0318260:intron 55.0%
! AGCTCGCAAACCGAAGGTGC+TGG - chr2_4:16783329-16783348 Msa0318260:intron 60.0%
GTCCCAGCACTTGCCGTAAC+CGG - chr2_4:16784290-16784309 Msa0318260:intron 60.0%
! TGCCGGTTACGGCAAGTGCT+GGG + chr2_4:16784295-16784314 Msa0318240:intron 60.0%
! ATGCCGGTTACGGCAAGTGC+TGG + chr2_4:16784296-16784315 Msa0318240:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 16782220 16785362 16782220 ID=Msa0318260;Name=Msa0318260
chr2_4 mRNA 16782220 16785362 16782220 ID=Msa0318260-mRNA-1;Parent=Msa0318260;Name=Msa0318260-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.76|0.64|0.92|0.61|0.71|14|155|350
chr2_4 exon 16782220 16782547 16782220 ID=Msa0318260-mRNA-1:exon:6285;Parent=Msa0318260-mRNA-1
chr2_4 exon 16782693 16782807 16782693 ID=Msa0318260-mRNA-1:exon:6284;Parent=Msa0318260-mRNA-1
chr2_4 exon 16783100 16783159 16783100 ID=Msa0318260-mRNA-1:exon:6283;Parent=Msa0318260-mRNA-1
chr2_4 exon 16783263 16783316 16783263 ID=Msa0318260-mRNA-1:exon:6282;Parent=Msa0318260-mRNA-1
chr2_4 exon 16783398 16783457 16783398 ID=Msa0318260-mRNA-1:exon:6281;Parent=Msa0318260-mRNA-1
chr2_4 exon 16783480 16783593 16783480 ID=Msa0318260-mRNA-1:exon:6280;Parent=Msa0318260-mRNA-1
chr2_4 exon 16783687 16783730 16783687 ID=Msa0318260-mRNA-1:exon:6279;Parent=Msa0318260-mRNA-1
chr2_4 exon 16783912 16783985 16783912 ID=Msa0318260-mRNA-1:exon:6278;Parent=Msa0318260-mRNA-1
chr2_4 exon 16784196 16784251 16784196 ID=Msa0318260-mRNA-1:exon:6277;Parent=Msa0318260-mRNA-1
chr2_4 exon 16784394 16784486 16784394 ID=Msa0318260-mRNA-1:exon:6276;Parent=Msa0318260-mRNA-1
chr2_4 exon 16784589 16784653 16784589 ID=Msa0318260-mRNA-1:exon:6275;Parent=Msa0318260-mRNA-1
chr2_4 exon 16784778 16784852 16784778 ID=Msa0318260-mRNA-1:exon:6274;Parent=Msa0318260-mRNA-1
chr2_4 exon 16785002 16785067 16785002 ID=Msa0318260-mRNA-1:exon:6273;Parent=Msa0318260-mRNA-1
chr2_4 exon 16785359 16785362 16785359 ID=Msa0318260-mRNA-1:exon:6272;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16785359 16785362 16785359 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16785002 16785067 16785002 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16784778 16784852 16784778 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16784589 16784653 16784589 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16784394 16784486 16784394 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16784196 16784251 16784196 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16783912 16783985 16783912 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16783687 16783730 16783687 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16783480 16783593 16783480 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16783398 16783457 16783398 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16783263 16783316 16783263 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16783100 16783159 16783100 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16782693 16782807 16782693 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 CDS 16782375 16782547 16782375 ID=Msa0318260-mRNA-1:cds;Parent=Msa0318260-mRNA-1
chr2_4 three_prime_UTR 16782220 16782374 16782220 ID=Msa0318260-mRNA-1:three_prime_utr;Parent=Msa0318260-mRNA-1
Gene Sequence

>Msa0318260

ATGTGTTCCTGTGTTCGTAGCAGAAATTGCGCCAAAAGAACTCCGAGGTGCCCTGACTACCTTAAATCAGTTCATGATTGTTACTGCTGTATCAGTGCATTCATAATTGGAACAGTACTTTCATGGAGGGCTTTAGCTATAATCGGCCTTATTCCCACTGCTGTGTTGCTTCTGGGTCTGTTTTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAGCGAGGACGCACAAAAGATTTTGTGGCAGCATTACAAATACTTCGCGGTAAAGATGCTGATATATCTGAAGAGGCAGAAGAAATTCAGCTCGCAAACCGAAGGTGCTGGATTTGTTTCAAAGAAGATATTTACGCTCACTCACAGGCTTATGGTTTGCCAGCAATTAGGGGGAATCAATGTGTTTGCTTTTATACTAGTAGTATTTTTGATCTAGCAGGATTTCCTTCTGCGACGGGGAGTATAATATACGCTATCCTTCAGATTGTGATCACAGGTGTTGGAGCAGCCCTCATAGATAGAGCAGGCCGGAAGCCACAAACAACTTATTTTTTATTTTCATTTGCTTATCTCCGCTTCATGTATGATACTCTTATTGTATCTGGATCAGGATTGGTTGCAGGATGCATATTTACAGCAGTTGCATTCTATCTCAAGGTTCATGATGTGGCTGTGGGAGCAGTCCCAGCACTTGCCGTAACCGGCATATTGGTCTACATAGGATCGTTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGATATTTCCAGTCAATATTAAGGGGCAGGCAGGAAGCATAGCAACATTAGTGAACTGGTTTGGTGCATGGTTATGCTCCTATACTTTCAACTTTCTCATGAGTTGGAGCTCCTATGGTACCTTCGTTCTTTACGCTGCAATCAATGCACTGTCTATATTATTTATAGTTGTAGTAGTCCCAGAAACCAAAGGTAAAAGCCTTGAACAATTACAGGCAGCCATTACGCGTAGGAAGTTTGCGATTTGTGTAGTGTTTGGTGGAAATTGGAACAACAAGGATGAAAGTTGA
Protein sequence

>Msa0318260

MCSCVRSRNCAKRTPRCPDYLKSVHDCYCCISAFIIGTVLSWRALAIIGLIPTAVLLLGLFFIPESPRWLAKRGRTKDFVAALQILRGKDADISEEAEEIQLANRRCWICFKEDIYAHSQAYGLPAIRGNQCVCFYTSSIFDLAGFPSATGSIIYAILQIVITGVGAALIDRAGRKPQTTYFLFSFAYLRFMYDTLIVSGSGLVAGCIFTAVAFYLKVHDVAVGAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGQAGSIATLVNWFGAWLCSYTFNFLMSWSSYGTFVLYAAINALSILFIVVVVPETKGKSLEQLQAAITRRKFAICVVFGGNWNNKDES*