AlfalfaGEDB | Msa0243140

M. sativa cultivar zhongmu-4 / Msa0243140

KEGG: K02943
GO: -
PFAM: PF00428.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243140	XP_013464930.1	96.460	113	4	0	1	113	1	113	3.86e-66	205

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243140	sp\|O24415\|RLA2B_MAIZE	65.487	113	39	0	1	113	1	113	8.56e-32	111

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243140	A0A072VLF0	96.460	113	4	0	1	113	1	113	1.84e-66	205

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0243140	0.807622	4.620561e-50	-8.615850e-47
Msa0002790	Msa0243140	0.838398	2.945143e-57	-8.615850e-47
Msa0163760	Msa0243140	0.806709	7.212185e-50	-8.615850e-47
Msa0221030	Msa0243140	0.824645	7.216556e-54	-8.615850e-47
Msa0243140	Msa0289580	0.808649	2.791312e-50	-8.615850e-47
Msa0243140	Msa0289610	0.810272	1.251989e-50	-8.615850e-47
Msa0243140	Msa0306690	0.801542	8.571400e-49	-8.615850e-47
Msa0243140	Msa0327300	0.830689	2.549825e-55	-8.615850e-47
Msa0243140	Msa0341880	0.805206	1.492895e-49	-8.615850e-47
Msa0243140	Msa0531650	0.813273	2.782510e-51	-8.615850e-47

Showing 1 to 10 of 22 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243140	MtrunA17_Chr2g0321121	96.460	113	4	0	1	113	1	113	3.55e-70	205
Msa0243140	MtrunA17_Chr5g0421491	87.611	113	14	0	1	113	1	113	5.16e-38	124
Msa0243140	MtrunA17_Chr1g0179001	73.451	113	29	1	1	113	1	112	8.39e-30	103

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243140	AT2G27710.4	77.143	70	16	0	1	70	1	70	9.36e-32	108
Msa0243140	AT3G44590.1	67.257	113	35	2	1	113	1	111	8.38e-30	103
Msa0243140	AT3G44590.2	67.257	113	35	2	1	113	1	111	8.38e-30	103
Msa0243140	AT2G27720.1	66.087	115	37	1	1	113	1	115	1.93e-27	97.8
Msa0243140	AT2G27710.1	75.385	65	16	0	1	65	1	65	2.45e-25	92.4
Msa0243140	AT2G27710.2	75.385	65	16	0	1	65	1	65	2.45e-25	92.4
Msa0243140	AT2G27710.3	75.385	65	16	0	1	65	1	65	2.45e-25	92.4
Msa0243140	AT3G28500.1	55.652	115	49	2	1	113	1	115	3.14e-25	92.0
Msa0243140	AT2G27720.3	59.843	127	37	2	1	113	1	127	6.69e-24	89.0
Msa0243140	AT2G27720.2	57.692	130	38	2	1	113	1	130	1.44e-22	85.9

Showing 1 to 10 of 12 entries

Previous1 2Next

Find 51 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTGGCTTCAGTTCCATC+CGG	0.567453	2_2:-19992050	Msa0243140:CDS
AGAGAAGAAGGTGGAAGAGA+AGG	0.434796	2_2:-19991952	Msa0243140:CDS
AGCAAAGGAAGAGAAGAAGG+TGG	0.683753	2_2:-19991961	Msa0243140:CDS
AGCAGCAAAGGAAGAGAAGA+AGG	0.518126	2_2:-19991964	Msa0243140:CDS
AGCTTACTTGTTGGCCGTTT+TGG	0.128749	2_2:-19993276	Msa0243140:CDS
ATCTTACTTGATGGAAATGG+CGG	0.571234	2_2:+19993405	None:intergenic
ATTCAGCTTATTTGATTAAA+AGG	0.186887	2_2:-19991820	Msa0243140:exon
ATTCATGAATCAACCACTAG+AGG	0.615895	2_2:+19991598	None:intergenic
ATTGTCTTAATATTATTGCA+TGG	0.594069	2_2:-19991517	Msa0243140:three_prime_UTR
CAACTCAATGTTGCCATCCT+CGG	0.536919	2_2:+19992130	None:intergenic

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATATCTTACTTGATGGAAA+TGG	+	chr2_2:19991534-19991553	None:intergenic	30.0%
GAAATCGATATCTTACTTGA+TGG	+	chr2_2:19991540-19991559	None:intergenic	30.0%
GCTGATCTTAAACAAATTCT+TGG	-	chr2_2:19991703-19991722	Msa0243140:three_prime_UTR	30.0%
CTTAAACAAATTCTTGGATC+AGG	-	chr2_2:19991709-19991728	Msa0243140:three_prime_UTR	30.0%
AAATAATCAATCCTAGACTG+TGG	-	chr2_2:19991943-19991962	Msa0243140:CDS	30.0%
AATAATCAATCCTAGACTGT+GGG	-	chr2_2:19991944-19991963	Msa0243140:CDS	30.0%
TATCTACTGTTAGACTGTTA+AGG	-	chr2_2:19992282-19992301	Msa0243140:intron	30.0%
CCAGTCAATAAATATCAACT+TGG	+	chr2_2:19993445-19993464	None:intergenic	30.0%
GATATCTTACTTGATGGAAA+TGG	+	chr2_2:19991534-19991553	None:intergenic	30.0%
GAAATCGATATCTTACTTGA+TGG	+	chr2_2:19991540-19991559	None:intergenic	30.0%

Showing 1 to 10 of 200 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	19991476	19993479	19991476	ID=Msa0243140;Name=Msa0243140
chr2_2	mRNA	19991476	19993479	19991476	ID=Msa0243140-mRNA-1;Parent=Msa0243140;Name=Msa0243140-mRNA-1;_AED=0.07;_eAED=0.07;_QI=70\|1\|1\|1\|0.66\|0.5\|4\|348\|113
chr2_2	exon	19991476	19991850	19991476	ID=Msa0243140-mRNA-1:exon:8063;Parent=Msa0243140-mRNA-1
chr2_2	exon	19991938	19992164	19991938	ID=Msa0243140-mRNA-1:exon:8062;Parent=Msa0243140-mRNA-1
chr2_2	exon	19993225	19993314	19993225	ID=Msa0243140-mRNA-1:exon:8061;Parent=Msa0243140-mRNA-1
chr2_2	exon	19993412	19993479	19993412	ID=Msa0243140-mRNA-1:exon:8060;Parent=Msa0243140-mRNA-1
chr2_2	five_prime_UTR	19993412	19993479	19993412	ID=Msa0243140-mRNA-1:five_prime_utr;Parent=Msa0243140-mRNA-1
chr2_2	five_prime_UTR	19993313	19993314	19993313	ID=Msa0243140-mRNA-1:five_prime_utr;Parent=Msa0243140-mRNA-1
chr2_2	CDS	19993225	19993312	19993225	ID=Msa0243140-mRNA-1:cds;Parent=Msa0243140-mRNA-1
chr2_2	CDS	19991938	19992164	19991938	ID=Msa0243140-mRNA-1:cds;Parent=Msa0243140-mRNA-1
chr2_2	CDS	19991824	19991850	19991824	ID=Msa0243140-mRNA-1:cds;Parent=Msa0243140-mRNA-1
chr2_2	three_prime_UTR	19991476	19991823	19991476	ID=Msa0243140-mRNA-1:three_prime_utr;Parent=Msa0243140-mRNA-1

Gene Sequence	>Msa0243140 ATGAAGATTATCGCAGCTTACTTGTTGGCCGTTTTGGGAGGCAACCAATCCCCTTCTGCTGCTGATCTTAAACAAATTCTTGGATCAGTTGGAGTTGAGGCCGAGGATGGCAACATTGAGTTGCTCCTAAGTGAAGTCAAGGGCAAGGACTTTGCCGAGCTTATTGCCAGTGGAAGAGAAAAGTTGGCTTCAGTTCCATCCGGTGGTGGTGCTGTTGCTGTGTCTGCTGCAACTGGAGGAGGTGCTGCAGCTGCTGCACCTGCTGAAGCAGCAAAGGAAGAGAAGAAGGTGGAAGAGAAGGAAGAATCCGATGATGATATGGGATTCAGCTTATTTGATTAA
Protein sequence	>Msa0243140 MKIIAAYLLAVLGGNQSPSAADLKQILGSVGVEAEDGNIELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVSAATGGGAAAAAPAEAAKEEKKVEEKEESDDDMGFSLFD*