Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163760 | GAU42317.1 | 94.286 | 70 | 4 | 0 | 1 | 70 | 34 | 103 | 9.27e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163760 | sp|Q9LXM8|RLA24_ARATH | 72.857 | 70 | 19 | 0 | 1 | 70 | 1 | 70 | 1.58e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163760 | A0A2Z6PEM2 | 94.286 | 70 | 4 | 0 | 1 | 70 | 34 | 103 | 4.43e-36 | 131 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0163760 | 0.840159 | 1.028712e-57 | -8.615850e-47 |
| Msa0002790 | Msa0163760 | 0.854186 | 1.455166e-61 | -8.615850e-47 |
| Msa0022970 | Msa0163760 | 0.829478 | 5.032682e-55 | -8.615850e-47 |
| Msa0027260 | Msa0163760 | 0.807720 | 4.403812e-50 | -8.615850e-47 |
| Msa0032810 | Msa0163760 | 0.826541 | 2.563257e-54 | -8.615850e-47 |
| Msa0033880 | Msa0163760 | 0.822156 | 2.754327e-53 | -8.615850e-47 |
| Msa0040690 | Msa0163760 | 0.829735 | 4.358235e-55 | -8.615850e-47 |
| Msa0042280 | Msa0163760 | 0.842350 | 2.728534e-58 | -8.615850e-47 |
| Msa0045730 | Msa0163760 | 0.826299 | 2.926895e-54 | -8.615850e-47 |
| Msa0047160 | Msa0163760 | 0.821444 | 4.025070e-53 | -8.615850e-47 |
| Msa0048180 | Msa0163760 | 0.856222 | 3.723341e-62 | -8.615850e-47 |
| Msa0068000 | Msa0163760 | 0.804123 | 2.512428e-49 | -8.615850e-47 |
| Msa0074030 | Msa0163760 | 0.803880 | 2.822491e-49 | -8.615850e-47 |
| Msa0074320 | Msa0163760 | 0.810171 | 1.316434e-50 | -8.615850e-47 |
| Msa0076040 | Msa0163760 | 0.814693 | 1.352647e-51 | -8.615850e-47 |
| Msa0077010 | Msa0163760 | 0.806390 | 8.419851e-50 | -8.615850e-47 |
| Msa0086750 | Msa0163760 | 0.810943 | 8.964433e-51 | -8.615850e-47 |
| Msa0090520 | Msa0163760 | 0.830356 | 3.075497e-55 | -8.615850e-47 |
| Msa0093850 | Msa0163760 | 0.813615 | 2.339558e-51 | -8.615850e-47 |
| Msa0094470 | Msa0163760 | 0.817528 | 3.147402e-52 | -8.615850e-47 |
| Msa0097600 | Msa0163760 | 0.825279 | 5.110837e-54 | -8.615850e-47 |
| Msa0100740 | Msa0163760 | 0.801748 | 7.779338e-49 | -8.615850e-47 |
| Msa0105370 | Msa0163760 | 0.801251 | 9.833782e-49 | -8.615850e-47 |
| Msa0113240 | Msa0163760 | 0.820760 | 5.783943e-53 | -8.615850e-47 |
| Msa0116130 | Msa0163760 | 0.820972 | 5.170705e-53 | -8.615850e-47 |
| Msa0116670 | Msa0163760 | 0.821225 | 4.520954e-53 | -8.615850e-47 |
| Msa0118710 | Msa0163760 | 0.861976 | 7.024090e-64 | -8.615850e-47 |
| Msa0126840 | Msa0163760 | 0.809505 | 1.830874e-50 | -8.615850e-47 |
| Msa0127850 | Msa0163760 | 0.815444 | 9.215152e-52 | -8.615850e-47 |
| Msa0128860 | Msa0163760 | 0.853426 | 2.408725e-61 | -8.615850e-47 |
| Msa0133540 | Msa0163760 | 0.851081 | 1.119758e-60 | -8.615850e-47 |
| Msa0137990 | Msa0163760 | 0.832530 | 8.970422e-56 | -8.615850e-47 |
| Msa0163760 | Msa0167480 | 0.866487 | 2.749882e-65 | -8.615850e-47 |
| Msa0163760 | Msa0173530 | 0.822667 | 2.095284e-53 | -8.615850e-47 |
| Msa0163760 | Msa0174000 | 0.809360 | 1.966723e-50 | -8.615850e-47 |
| Msa0163760 | Msa0174730 | 0.852408 | 4.708006e-61 | -8.615850e-47 |
| Msa0163760 | Msa0181490 | 0.843228 | 1.594325e-58 | -8.615850e-47 |
| Msa0163760 | Msa0181610 | 0.803613 | 3.207128e-49 | -8.615850e-47 |
| Msa0163760 | Msa0183900 | 0.834413 | 3.041401e-56 | -8.615850e-47 |
| Msa0163760 | Msa0187690 | 0.802203 | 6.271234e-49 | -8.615850e-47 |
| Msa0163760 | Msa0187930 | 0.837683 | 4.499025e-57 | -8.615850e-47 |
| Msa0163760 | Msa0188350 | 0.833105 | 6.454790e-56 | -8.615850e-47 |
| Msa0163760 | Msa0189300 | 0.819731 | 9.957149e-53 | -8.615850e-47 |
| Msa0163760 | Msa0189700 | 0.830798 | 2.396968e-55 | -8.615850e-47 |
| Msa0163760 | Msa0194540 | 0.833959 | 3.951001e-56 | -8.615850e-47 |
| Msa0163760 | Msa0202110 | 0.810716 | 1.004000e-50 | -8.615850e-47 |
| Msa0163760 | Msa0218830 | 0.817953 | 2.523560e-52 | -8.615850e-47 |
| Msa0163760 | Msa0219120 | 0.823655 | 1.232550e-53 | -8.615850e-47 |
| Msa0163760 | Msa0221030 | 0.827549 | 1.471515e-54 | -8.615850e-47 |
| Msa0163760 | Msa0230490 | 0.830618 | 2.653272e-55 | -8.615850e-47 |
| Msa0163760 | Msa0230520 | 0.824609 | 7.357390e-54 | -8.615850e-47 |
| Msa0163760 | Msa0231100 | 0.861673 | 8.699174e-64 | -8.615850e-47 |
| Msa0163760 | Msa0231660 | 0.830668 | 2.579417e-55 | -8.615850e-47 |
| Msa0163760 | Msa0232010 | 0.828490 | 8.735508e-55 | -8.615850e-47 |
| Msa0163760 | Msa0232080 | 0.829155 | 6.030797e-55 | -8.615850e-47 |
| Msa0163760 | Msa0243140 | 0.806709 | 7.212185e-50 | -8.615850e-47 |
| Msa0163760 | Msa0244780 | 0.841986 | 3.406872e-58 | -8.615850e-47 |
| Msa0163760 | Msa0245430 | 0.827658 | 1.385028e-54 | -8.615850e-47 |
| Msa0163760 | Msa0245580 | 0.810467 | 1.136241e-50 | -8.615850e-47 |
| Msa0163760 | Msa0258390 | 0.803144 | 4.009843e-49 | -8.615850e-47 |
| Msa0163760 | Msa0258850 | 0.826002 | 3.444320e-54 | -8.615850e-47 |
| Msa0163760 | Msa0262480 | 0.836718 | 7.941816e-57 | -8.615850e-47 |
| Msa0163760 | Msa0268130 | 0.823192 | 1.580866e-53 | -8.615850e-47 |
| Msa0163760 | Msa0269180 | 0.802858 | 4.594390e-49 | -8.615850e-47 |
| Msa0163760 | Msa0289580 | 0.862741 | 4.089321e-64 | -8.615850e-47 |
| Msa0163760 | Msa0289610 | 0.865529 | 5.527803e-65 | -8.615850e-47 |
| Msa0163760 | Msa0296250 | 0.847418 | 1.171092e-59 | -8.615850e-47 |
| Msa0163760 | Msa0298200 | 0.826433 | 2.720256e-54 | -8.615850e-47 |
| Msa0163760 | Msa0298990 | 0.825413 | 4.752112e-54 | -8.615850e-47 |
| Msa0163760 | Msa0300350 | 0.834806 | 2.422388e-56 | -8.615850e-47 |
| Msa0163760 | Msa0304660 | 0.805351 | 1.392169e-49 | -8.615850e-47 |
| Msa0163760 | Msa0305780 | 0.819058 | 1.417795e-52 | -8.615850e-47 |
| Msa0163760 | Msa0306690 | 0.862601 | 4.515642e-64 | -8.615850e-47 |
| Msa0163760 | Msa0317910 | 0.832963 | 7.004232e-56 | -8.615850e-47 |
| Msa0163760 | Msa0321640 | 0.805686 | 1.184409e-49 | -8.615850e-47 |
| Msa0163760 | Msa0327300 | 0.885888 | 5.511514e-72 | -8.615850e-47 |
| Msa0163760 | Msa0327330 | 0.840499 | 8.383587e-58 | -8.615850e-47 |
| Msa0163760 | Msa0331700 | 0.806625 | 7.509640e-50 | -8.615850e-47 |
| Msa0163760 | Msa0332640 | 0.836978 | 6.813823e-57 | -8.615850e-47 |
| Msa0163760 | Msa0333190 | 0.821037 | 4.994258e-53 | -8.615850e-47 |
| Msa0163760 | Msa0341690 | 0.807945 | 3.943654e-50 | -8.615850e-47 |
| Msa0163760 | Msa0348830 | 0.841991 | 3.395745e-58 | -8.615850e-47 |
| Msa0163760 | Msa0357900 | 0.814361 | 1.602140e-51 | -8.615850e-47 |
| Msa0163760 | Msa0423750 | 0.806219 | 9.149478e-50 | -8.615850e-47 |
| Msa0163760 | Msa0443390 | 0.862744 | 4.078369e-64 | -8.615850e-47 |
| Msa0163760 | Msa0483110 | 0.815250 | 1.017726e-51 | -8.615850e-47 |
| Msa0163760 | Msa0526540 | 0.864505 | 1.158618e-64 | -8.615850e-47 |
| Msa0163760 | Msa0527150 | 0.822154 | 2.757542e-53 | -8.615850e-47 |
| Msa0163760 | Msa0531650 | 0.838899 | 2.185827e-57 | -8.615850e-47 |
| Msa0163760 | Msa0534750 | 0.863640 | 2.155147e-64 | -8.615850e-47 |
| Msa0163760 | Msa0554290 | 0.819646 | 1.041230e-52 | -8.615850e-47 |
| Msa0163760 | Msa0561430 | 0.801725 | 7.861550e-49 | -8.615850e-47 |
| Msa0163760 | Msa0571920 | 0.856709 | 2.678003e-62 | -8.615850e-47 |
| Msa0163760 | Msa0576940 | 0.855715 | 5.236534e-62 | -8.615850e-47 |
| Msa0163760 | Msa0581110 | 0.838762 | 2.372048e-57 | -8.615850e-47 |
| Msa0163760 | Msa0581280 | 0.832808 | 7.651661e-56 | -8.615850e-47 |
| Msa0163760 | Msa0584260 | 0.823923 | 1.066669e-53 | -8.615850e-47 |
| Msa0163760 | Msa0588360 | 0.834893 | 2.303369e-56 | -8.615850e-47 |
| Msa0163760 | Msa0590940 | 0.812554 | 3.999575e-51 | -8.615850e-47 |
| Msa0163760 | Msa0593700 | 0.825221 | 5.274640e-54 | -8.615850e-47 |
| Msa0163760 | Msa0603320 | 0.802977 | 4.342726e-49 | -8.615850e-47 |
| Msa0163760 | Msa0608370 | 0.800525 | 1.383496e-48 | -8.615850e-47 |
| Msa0163760 | Msa0615440 | 0.822928 | 1.821962e-53 | -8.615850e-47 |
| Msa0163760 | Msa0615580 | 0.824749 | 6.818610e-54 | -8.615850e-47 |
| Msa0163760 | Msa0621950 | 0.817712 | 2.859712e-52 | -8.615850e-47 |
| Msa0163760 | Msa0623200 | 0.826938 | 2.060980e-54 | -8.615850e-47 |
| Msa0163760 | Msa0633570 | 0.822758 | 1.995905e-53 | -8.615850e-47 |
| Msa0163760 | Msa0654870 | 0.810364 | 1.196053e-50 | -8.615850e-47 |
| Msa0163760 | Msa0666230 | 0.875175 | 3.789428e-68 | -8.615850e-47 |
| Msa0163760 | Msa0669520 | 0.813848 | 2.078872e-51 | -8.615850e-47 |
| Msa0163760 | Msa0688850 | 0.820747 | 5.823776e-53 | -8.615850e-47 |
| Msa0163760 | Msa0698490 | 0.822520 | 2.267303e-53 | -8.615850e-47 |
| Msa0163760 | Msa0698660 | 0.817202 | 3.725757e-52 | -8.615850e-47 |
| Msa0163760 | Msa0729200 | 0.849793 | 2.573384e-60 | -8.615850e-47 |
| Msa0163760 | Msa0738100 | 0.864384 | 1.263911e-64 | -8.615850e-47 |
| Msa0163760 | Msa0745200 | 0.809002 | 2.346360e-50 | -8.615850e-47 |
| Msa0163760 | Msa0753140 | 0.808511 | 2.987490e-50 | -8.615850e-47 |
| Msa0163760 | Msa0769590 | 0.854929 | 8.868095e-62 | -8.615850e-47 |
| Msa0163760 | Msa0785130 | 0.856142 | 3.928093e-62 | -8.615850e-47 |
| Msa0163760 | Msa0806880 | 0.866532 | 2.662631e-65 | -8.615850e-47 |
| Msa0163760 | Msa0817540 | 0.885437 | 8.136015e-72 | -8.615850e-47 |
| Msa0163760 | Msa0881290 | 0.832646 | 8.395038e-56 | -8.615850e-47 |
| Msa0163760 | Msa0913240 | 0.802761 | 4.811197e-49 | -8.615850e-47 |
| Msa0163760 | Msa0945480 | 0.811226 | 7.782261e-51 | -8.615850e-47 |
| Msa0163760 | Msa0989540 | 0.803144 | 4.009805e-49 | -8.615850e-47 |
| Msa0163760 | Msa1006840 | 0.848763 | 4.981036e-60 | -8.615850e-47 |
| Msa0163760 | Msa1012740 | 0.810115 | 1.352911e-50 | -8.615850e-47 |
| Msa0163760 | Msa1019240 | 0.860319 | 2.244593e-63 | -8.615850e-47 |
| Msa0163760 | Msa1019260 | 0.850825 | 1.321831e-60 | -8.615850e-47 |
| Msa0163760 | Msa1029070 | 0.810410 | 1.168710e-50 | -8.615850e-47 |
| Msa0163760 | Msa1072710 | 0.888195 | 7.318438e-73 | -8.615850e-47 |
| Msa0163760 | Msa1088490 | 0.845875 | 3.090669e-59 | -8.615850e-47 |
| Msa0163760 | Msa1104140 | 0.851154 | 1.067857e-60 | -8.615850e-47 |
| Msa0163760 | Msa1104210 | 0.844434 | 7.576872e-59 | -8.615850e-47 |
| Msa0163760 | Msa1126510 | 0.806136 | 9.525646e-50 | -8.615850e-47 |
| Msa0163760 | Msa1126830 | 0.840213 | 9.957616e-58 | -8.615850e-47 |
| Msa0163760 | Msa1135890 | 0.850443 | 1.692276e-60 | -8.615850e-47 |
| Msa0163760 | Msa1156160 | 0.800959 | 1.128219e-48 | -8.615850e-47 |
| Msa0163760 | Msa1165780 | 0.847865 | 8.822274e-60 | -8.615850e-47 |
| Msa0163760 | Msa1166860 | 0.801103 | 1.054497e-48 | -8.615850e-47 |
| Msa0163760 | Msa1166870 | 0.849007 | 4.261319e-60 | -8.615850e-47 |
| Msa0163760 | Msa1179980 | 0.807203 | 5.668311e-50 | -8.615850e-47 |
| Msa0163760 | Msa1195300 | 0.803316 | 3.695494e-49 | -8.615850e-47 |
| Msa0163760 | Msa1202580 | 0.803963 | 2.712157e-49 | -8.615850e-47 |
| Msa0163760 | Msa1208020 | 0.847854 | 8.884448e-60 | -8.615850e-47 |
| Msa0163760 | Msa1209200 | 0.823414 | 1.403123e-53 | -8.615850e-47 |
| Msa0163760 | Msa1215820 | 0.836315 | 1.005702e-56 | -8.615850e-47 |
| Msa0163760 | Msa1218450 | 0.815745 | 7.897595e-52 | -8.615850e-47 |
| Msa0163760 | Msa1230580 | 0.810712 | 1.005967e-50 | -8.615850e-47 |
| Msa0163760 | Msa1257510 | 0.811397 | 7.144698e-51 | -8.615850e-47 |
| Msa0163760 | Msa1262890 | 0.816561 | 5.189215e-52 | -8.615850e-47 |
| Msa0163760 | Msa1264210 | 0.814384 | 1.583759e-51 | -8.615850e-47 |
| Msa0163760 | Msa1265630 | 0.823746 | 1.173097e-53 | -8.615850e-47 |
| Msa0163760 | Msa1270620 | 0.802779 | 4.771040e-49 | -8.615850e-47 |
| Msa0163760 | Msa1270690 | 0.805102 | 1.570034e-49 | -8.615850e-47 |
| Msa0163760 | Msa1305050 | 0.826271 | 2.973739e-54 | -8.615850e-47 |
| Msa0163760 | Msa1331250 | 0.835981 | 1.222674e-56 | -8.615850e-47 |
| Msa0163760 | Msa1331710 | 0.829061 | 6.355664e-55 | -8.615850e-47 |
| Msa0163760 | Msa1343260 | 0.829672 | 4.514776e-55 | -8.615850e-47 |
| Msa0163760 | Msa1349570 | 0.859233 | 4.765574e-63 | -8.615850e-47 |
| Msa0163760 | Msa1351540 | 0.812504 | 4.100468e-51 | -8.615850e-47 |
| Msa0163760 | Msa1363330 | 0.865566 | 5.383190e-65 | -8.615850e-47 |
| Msa0163760 | Msa1366180 | 0.841376 | 4.932441e-58 | -8.615850e-47 |
| Msa0163760 | Msa1369190 | 0.825801 | 3.845535e-54 | -8.615850e-47 |
| Msa0163760 | Msa1379760 | 0.853174 | 2.845064e-61 | -8.615850e-47 |
| Msa0163760 | Msa1386600 | 0.866301 | 3.151172e-65 | -8.615850e-47 |
| Msa0163760 | Msa1387410 | 0.826516 | 2.598949e-54 | -8.615850e-47 |
| Msa0163760 | Msa1394290 | 0.814071 | 1.856752e-51 | -8.615850e-47 |
| Msa0163760 | Msa1413500 | 0.866141 | 3.541319e-65 | -8.615850e-47 |
| Msa0163760 | Msa1426370 | 0.888674 | 4.787673e-73 | -8.615850e-47 |
| Msa0163760 | Msa1426490 | 0.839305 | 1.716037e-57 | -8.615850e-47 |
| Msa0163760 | Msa1427560 | 0.809654 | 1.700062e-50 | -8.615850e-47 |
| Msa0163760 | Msa1433310 | 0.811993 | 5.300889e-51 | -8.615850e-47 |
| Msa0163760 | Msa1440310 | 0.803050 | 4.194350e-49 | -8.615850e-47 |
| Msa0163760 | Msa1448690 | 0.827365 | 1.628657e-54 | -8.615850e-47 |
| Msa0163760 | Msa1450280 | 0.829242 | 5.744768e-55 | -8.615850e-47 |
| Msa0163760 | Msa1456050 | 0.800861 | 1.181570e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163760 | MtrunA17_Chr1g0179001 | 96.970 | 66 | 2 | 0 | 1 | 66 | 1 | 66 | 1.56e-37 | 124 |
| Msa0163760 | MtrunA17_Chr2g0321121 | 74.667 | 75 | 19 | 0 | 1 | 75 | 1 | 75 | 1.59e-32 | 111 |
| Msa0163760 | MtrunA17_Chr5g0421491 | 72.727 | 66 | 18 | 0 | 1 | 66 | 1 | 66 | 1.34e-26 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163760 | AT2G27710.4 | 72.857 | 70 | 19 | 0 | 1 | 70 | 1 | 70 | 5.76e-29 | 102 |
| Msa0163760 | AT3G44590.1 | 72.857 | 70 | 19 | 0 | 1 | 70 | 1 | 70 | 1.60e-28 | 102 |
| Msa0163760 | AT3G44590.2 | 72.857 | 70 | 19 | 0 | 1 | 70 | 1 | 70 | 1.60e-28 | 102 |
| Msa0163760 | AT2G27710.1 | 71.212 | 66 | 19 | 0 | 1 | 66 | 1 | 66 | 3.29e-22 | 85.9 |
| Msa0163760 | AT2G27710.2 | 71.212 | 66 | 19 | 0 | 1 | 66 | 1 | 66 | 3.29e-22 | 85.9 |
| Msa0163760 | AT2G27710.3 | 71.212 | 66 | 19 | 0 | 1 | 66 | 1 | 66 | 3.29e-22 | 85.9 |
| Msa0163760 | AT2G27720.1 | 71.212 | 66 | 19 | 0 | 1 | 66 | 1 | 66 | 5.12e-22 | 85.5 |
| Msa0163760 | AT2G27720.3 | 60.256 | 78 | 19 | 1 | 1 | 66 | 1 | 78 | 1.81e-18 | 76.6 |
| Msa0163760 | AT3G28500.1 | 45.217 | 115 | 57 | 3 | 1 | 111 | 1 | 113 | 7.96e-18 | 74.7 |
| Msa0163760 | AT2G27720.2 | 56.790 | 81 | 20 | 1 | 1 | 66 | 1 | 81 | 4.14e-17 | 73.2 |
| Msa0163760 | AT5G40040.1 | 53.846 | 65 | 30 | 0 | 1 | 65 | 1 | 65 | 4.26e-16 | 70.1 |
Find 42 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATGTTGGAGTTATATTT+TGG | 0.214940 | 1_4:+42096937 | Msa0163760:three_prime_UTR |
| GCCTATTTGCTCGCTGTTCT+TGG | 0.258518 | 1_4:+42095202 | Msa0163760:CDS |
| GAGGATGTCCTTGATGGTTT+TGG | 0.299226 | 1_4:-42095245 | None:intergenic |
| ATAGCTGAGGTTATTGCTTC+TGG | 0.312841 | 1_4:+42095836 | Msa0163760:CDS |
| TTCTTTGCCTCAGCAGCTGC+AGG | 0.352045 | 1_4:-42095938 | None:intergenic |
| TGCTGCTCCTGCAGCTGCTG+AGG | 0.400029 | 1_4:+42095931 | Msa0163760:CDS |
| AAGTTGGCATCAGTTCCTTC+TGG | 0.404850 | 1_4:+42095866 | Msa0163760:CDS |
| GCTAAAGCAATAGAAATTGA+TGG | 0.409254 | 1_4:+42097021 | Msa0163760:three_prime_UTR |
| TGCTTCTGGTAGGGAAAAGT+TGG | 0.410211 | 1_4:+42095850 | Msa0163760:CDS |
| GTTCAGAGATTTCAATTTCA+AGG | 0.414523 | 1_4:-42095120 | None:intergenic |
| TTTCTTGCAATGCAGGATAT+GGG | 0.416445 | 1_4:+42096785 | Msa0163760:intron |
| TCAATATATTCGAGGGCAAC+TGG | 0.416883 | 1_4:-42097099 | None:intergenic |
| GGATCCGAGGATGTCCTTGA+TGG | 0.416992 | 1_4:-42095251 | None:intergenic |
| GTTTGAGAATGAAATGCAAA+AGG | 0.460697 | 1_4:-42095149 | None:intergenic |
| CGCCGTCAGCGTAAAGATGA+AGG | 0.464823 | 1_4:+42095171 | Msa0163760:exon |
| ACCAAGAACAGCGAGCAAAT+AGG | 0.468861 | 1_4:-42095203 | None:intergenic |
| CAAATAAGAAACGAAATGTC+TGG | 0.470083 | 1_4:-42096994 | None:intergenic |
| ATCAAGGACATCCTCGGATC+CGG | 0.474041 | 1_4:+42095253 | Msa0163760:CDS |
| GAGCAGACGCAGAAGATGAT+AGG | 0.489365 | 1_4:+42095777 | Msa0163760:CDS |
| GCATCAGTTCCTTCTGGTGG+TGG | 0.495446 | 1_4:+42095872 | Msa0163760:CDS |
| TTATATGTATGCGCTATAAG+TGG | 0.501720 | 1_4:+42096059 | Msa0163760:CDS |
| TTCAGAGATTTCAATTTCAA+GGG | 0.508396 | 1_4:-42095119 | None:intergenic |
| TCAGTTCCTTCTGGTGGTGG+CGG | 0.512709 | 1_4:+42095875 | Msa0163760:CDS |
| AACCTTCATCTTTACGCTGA+CGG | 0.523625 | 1_4:-42095173 | None:intergenic |
| GCTGCTGCACCTGCGAGTGG+TGG | 0.523717 | 1_4:+42095908 | Msa0163760:CDS |
| GTTGCTGCTGCACCTGCGAG+TGG | 0.531011 | 1_4:+42095905 | Msa0163760:CDS |
| AGCTGCTGAGGCAAAGAAAG+AGG | 0.531573 | 1_4:+42095943 | Msa0163760:CDS |
| TGAGGTTATTGCTTCTGGTA+GGG | 0.533768 | 1_4:+42095841 | Msa0163760:CDS |
| TATTTGCTCGCTGTTCTTGG+TGG | 0.547005 | 1_4:+42095205 | Msa0163760:CDS |
| CTGAGGTTATTGCTTCTGGT+AGG | 0.548098 | 1_4:+42095840 | Msa0163760:CDS |
| GGAGCAGCACCACCACTCGC+AGG | 0.548277 | 1_4:-42095917 | None:intergenic |
| CCCCTCCGCCAAAACCATCA+AGG | 0.565900 | 1_4:+42095237 | Msa0163760:CDS |
| GGCAAAGAAAGAGGAGAAGG+TGG | 0.566691 | 1_4:+42095952 | Msa0163760:CDS |
| TTGGCATCAGTTCCTTCTGG+TGG | 0.568221 | 1_4:+42095869 | Msa0163760:CDS |
| TTTGAGAATGAAATGCAAAA+GGG | 0.573087 | 1_4:-42095148 | None:intergenic |
| TGAGGCAAAGAAAGAGGAGA+AGG | 0.574103 | 1_4:+42095949 | Msa0163760:CDS |
| GAAGAAACGAACCGGATCCG+AGG | 0.577935 | 1_4:-42095264 | None:intergenic |
| AAAACCATCAAGGACATCCT+CGG | 0.583067 | 1_4:+42095247 | Msa0163760:CDS |
| GCTGTGTATCAATATATTCG+AGG | 0.592134 | 1_4:-42097107 | None:intergenic |
| CTGTGTATCAATATATTCGA+GGG | 0.593876 | 1_4:-42097106 | None:intergenic |
| GCAACACCGCCACCACCAGA+AGG | 0.663456 | 1_4:-42095881 | None:intergenic |
| TAAGGGCAAAGATATAGCTG+AGG | 0.689474 | 1_4:+42095823 | Msa0163760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTCGATTTTTTTTTAT+CGG | + | chr1_4:42095456-42095475 | Msa0163760:intron | 15.0% |
| !!! | ATTTTTTAGAACTGTTTTTA+AGG | + | chr1_4:42095518-42095537 | Msa0163760:intron | 15.0% |
| !!! | AAGTTTTGTTTGATATATAA+TGG | + | chr1_4:42096850-42096869 | Msa0163760:CDS | 15.0% |
| !!! | TTATTTTAGTTTCTTAATGT+TGG | + | chr1_4:42096924-42096943 | Msa0163760:three_prime_UTR | 15.0% |
| !!! | TGATTTCGATTTTTTTTTAT+CGG | + | chr1_4:42095456-42095475 | Msa0163760:intron | 15.0% |
| !!! | ATTTTTTAGAACTGTTTTTA+AGG | + | chr1_4:42095518-42095537 | Msa0163760:intron | 15.0% |
| !!! | AAGTTTTGTTTGATATATAA+TGG | + | chr1_4:42096850-42096869 | Msa0163760:CDS | 15.0% |
| !!! | TTATTTTAGTTTCTTAATGT+TGG | + | chr1_4:42096924-42096943 | Msa0163760:three_prime_UTR | 15.0% |
| !!! | TTTTCGATGGATTTAATTAT+GGG | - | chr1_4:42095065-42095084 | None:intergenic | 20.0% |
| !!! | TTTTTCGATGGATTTAATTA+TGG | - | chr1_4:42095066-42095085 | None:intergenic | 20.0% |
| !!! | TTTGTGTAAAATGGATTTTA+GGG | - | chr1_4:42095098-42095117 | None:intergenic | 20.0% |
| !!! | TTTTGTGTAAAATGGATTTT+AGG | - | chr1_4:42095099-42095118 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGTCTGAAATTAA+GGG | + | chr1_4:42095806-42095825 | Msa0163760:CDS | 20.0% |
| !! | AAATGACTAAAAAGATTGAA+TGG | - | chr1_4:42096369-42096388 | None:intergenic | 20.0% |
| !!! | TATACAACTGTAATGTTTTA+TGG | + | chr1_4:42096585-42096604 | Msa0163760:intron | 20.0% |
| !!! | ATACAACTGTAATGTTTTAT+GGG | + | chr1_4:42096586-42096605 | Msa0163760:intron | 20.0% |
| !! | TCAATGATTAAAAACTAAGT+TGG | + | chr1_4:42096887-42096906 | Msa0163760:three_prime_UTR | 20.0% |
| !!! | TTAATGTTGGAGTTATATTT+TGG | + | chr1_4:42096937-42096956 | Msa0163760:three_prime_UTR | 20.0% |
| !!! | AGAAGCAAATTTTAATTAGA+TGG | - | chr1_4:42097049-42097068 | None:intergenic | 20.0% |
| !!! | TTTTCGATGGATTTAATTAT+GGG | - | chr1_4:42095065-42095084 | None:intergenic | 20.0% |
| !!! | TTTTTCGATGGATTTAATTA+TGG | - | chr1_4:42095066-42095085 | None:intergenic | 20.0% |
| !!! | TTTGTGTAAAATGGATTTTA+GGG | - | chr1_4:42095098-42095117 | None:intergenic | 20.0% |
| !!! | TTTTGTGTAAAATGGATTTT+AGG | - | chr1_4:42095099-42095118 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGTCTGAAATTAA+GGG | + | chr1_4:42095806-42095825 | Msa0163760:CDS | 20.0% |
| !! | AAATGACTAAAAAGATTGAA+TGG | - | chr1_4:42096369-42096388 | None:intergenic | 20.0% |
| !!! | TATACAACTGTAATGTTTTA+TGG | + | chr1_4:42096585-42096604 | Msa0163760:intron | 20.0% |
| !!! | ATACAACTGTAATGTTTTAT+GGG | + | chr1_4:42096586-42096605 | Msa0163760:intron | 20.0% |
| !! | TCAATGATTAAAAACTAAGT+TGG | + | chr1_4:42096887-42096906 | Msa0163760:three_prime_UTR | 20.0% |
| !!! | TTAATGTTGGAGTTATATTT+TGG | + | chr1_4:42096937-42096956 | Msa0163760:three_prime_UTR | 20.0% |
| !!! | AGAAGCAAATTTTAATTAGA+TGG | - | chr1_4:42097049-42097068 | None:intergenic | 20.0% |
| ! | TTCAGAGATTTCAATTTCAA+GGG | - | chr1_4:42095122-42095141 | None:intergenic | 25.0% |
| ! | TTTGAGAATGAAATGCAAAA+GGG | - | chr1_4:42095151-42095170 | None:intergenic | 25.0% |
| !!! | GTTGTTTTTGTCTGAAATTA+AGG | + | chr1_4:42095805-42095824 | Msa0163760:CDS | 25.0% |
| !! | ATGATGTAAGTTCTTTTTCT+GGG | + | chr1_4:42095993-42096012 | Msa0163760:CDS | 25.0% |
| ! | CACATAATGCAAATTAAACT+AGG | - | chr1_4:42096111-42096130 | None:intergenic | 25.0% |
| !! | TATGTGTTTTATACTCGAAA+AGG | + | chr1_4:42096125-42096144 | Msa0163760:intron | 25.0% |
| !! | CTTTTATGTGATTATGTGTA+TGG | + | chr1_4:42096496-42096515 | Msa0163760:intron | 25.0% |
| ! | TCATAGAATCACTCATAATA+TGG | + | chr1_4:42096642-42096661 | Msa0163760:intron | 25.0% |
| ! | AGTAGTTATGTATATTGTCT+TGG | + | chr1_4:42096701-42096720 | Msa0163760:intron | 25.0% |
| !! | TGATTAAAAACTAAGTTGGA+TGG | + | chr1_4:42096891-42096910 | Msa0163760:three_prime_UTR | 25.0% |
| ! | TTCAGAGATTTCAATTTCAA+GGG | - | chr1_4:42095122-42095141 | None:intergenic | 25.0% |
| ! | TTTGAGAATGAAATGCAAAA+GGG | - | chr1_4:42095151-42095170 | None:intergenic | 25.0% |
| !!! | GTTGTTTTTGTCTGAAATTA+AGG | + | chr1_4:42095805-42095824 | Msa0163760:CDS | 25.0% |
| !! | ATGATGTAAGTTCTTTTTCT+GGG | + | chr1_4:42095993-42096012 | Msa0163760:CDS | 25.0% |
| ! | CACATAATGCAAATTAAACT+AGG | - | chr1_4:42096111-42096130 | None:intergenic | 25.0% |
| !! | TATGTGTTTTATACTCGAAA+AGG | + | chr1_4:42096125-42096144 | Msa0163760:intron | 25.0% |
| !! | CTTTTATGTGATTATGTGTA+TGG | + | chr1_4:42096496-42096515 | Msa0163760:intron | 25.0% |
| ! | TCATAGAATCACTCATAATA+TGG | + | chr1_4:42096642-42096661 | Msa0163760:intron | 25.0% |
| ! | AGTAGTTATGTATATTGTCT+TGG | + | chr1_4:42096701-42096720 | Msa0163760:intron | 25.0% |
| !! | TGATTAAAAACTAAGTTGGA+TGG | + | chr1_4:42096891-42096910 | Msa0163760:three_prime_UTR | 25.0% |
| !! | GGGTTTCATATATTTTTCGA+TGG | - | chr1_4:42095078-42095097 | None:intergenic | 30.0% |
| !! | TTCAAGGGTTTTGTGTAAAA+TGG | - | chr1_4:42095107-42095126 | None:intergenic | 30.0% |
| GTTCAGAGATTTCAATTTCA+AGG | - | chr1_4:42095123-42095142 | None:intergenic | 30.0% | |
| GTTTGAGAATGAAATGCAAA+AGG | - | chr1_4:42095152-42095171 | None:intergenic | 30.0% | |
| AAACAATTGAAGAAACGAAC+CGG | - | chr1_4:42095275-42095294 | None:intergenic | 30.0% | |
| TTTATGCAGTAGCGTAAATT+AGG | + | chr1_4:42095427-42095446 | Msa0163760:intron | 30.0% | |
| TTATGCAGTAGCGTAAATTA+GGG | + | chr1_4:42095428-42095447 | Msa0163760:intron | 30.0% | |
| ATCACATGTGTTAGTTGTAT+CGG | + | chr1_4:42095597-42095616 | Msa0163760:intron | 30.0% | |
| ! | TGATTTGAAACATAACTGAC+AGG | + | chr1_4:42095729-42095748 | Msa0163760:intron | 30.0% |
| ! | GATTTGAAACATAACTGACA+GGG | + | chr1_4:42095730-42095749 | Msa0163760:intron | 30.0% |
| !! | TTTGTTGTTTGATTTGCAGT+TGG | + | chr1_4:42095755-42095774 | Msa0163760:intron | 30.0% |
| ! | GATGATGTAAGTTCTTTTTC+TGG | + | chr1_4:42095992-42096011 | Msa0163760:CDS | 30.0% |
| TTATATGTATGCGCTATAAG+TGG | + | chr1_4:42096059-42096078 | Msa0163760:CDS | 30.0% | |
| !!! | AGTGGTTTTAAACTTGCATT+TGG | + | chr1_4:42096077-42096096 | Msa0163760:intron | 30.0% |
| !! | GTTTTAAACTTGCATTTGGT+TGG | + | chr1_4:42096081-42096100 | Msa0163760:intron | 30.0% |
| !! | AAGGTTCTTGATTTGTACTT+AGG | + | chr1_4:42096144-42096163 | Msa0163760:intron | 30.0% |
| TTCACCATATATATCAAGAG+CGG | - | chr1_4:42096296-42096315 | None:intergenic | 30.0% | |
| TGAACTGTGATTAATAGCTA+TGG | + | chr1_4:42096436-42096455 | Msa0163760:intron | 30.0% | |
| AACATTACAGTTGTATAGCA+AGG | - | chr1_4:42096582-42096601 | None:intergenic | 30.0% | |
| ! | AACTGTAATGTTTTATGGGT+TGG | + | chr1_4:42096590-42096609 | Msa0163760:intron | 30.0% |
| CAAATAAGAAACGAAATGTC+TGG | - | chr1_4:42096997-42097016 | None:intergenic | 30.0% | |
| GCTAAAGCAATAGAAATTGA+TGG | + | chr1_4:42097021-42097040 | Msa0163760:three_prime_UTR | 30.0% | |
| CTGTGTATCAATATATTCGA+GGG | - | chr1_4:42097109-42097128 | None:intergenic | 30.0% | |
| !! | GGGTTTCATATATTTTTCGA+TGG | - | chr1_4:42095078-42095097 | None:intergenic | 30.0% |
| !! | TTCAAGGGTTTTGTGTAAAA+TGG | - | chr1_4:42095107-42095126 | None:intergenic | 30.0% |
| GTTCAGAGATTTCAATTTCA+AGG | - | chr1_4:42095123-42095142 | None:intergenic | 30.0% | |
| GTTTGAGAATGAAATGCAAA+AGG | - | chr1_4:42095152-42095171 | None:intergenic | 30.0% | |
| AAACAATTGAAGAAACGAAC+CGG | - | chr1_4:42095275-42095294 | None:intergenic | 30.0% | |
| TTTATGCAGTAGCGTAAATT+AGG | + | chr1_4:42095427-42095446 | Msa0163760:intron | 30.0% | |
| TTATGCAGTAGCGTAAATTA+GGG | + | chr1_4:42095428-42095447 | Msa0163760:intron | 30.0% | |
| ATCACATGTGTTAGTTGTAT+CGG | + | chr1_4:42095597-42095616 | Msa0163760:intron | 30.0% | |
| ! | TGATTTGAAACATAACTGAC+AGG | + | chr1_4:42095729-42095748 | Msa0163760:intron | 30.0% |
| ! | GATTTGAAACATAACTGACA+GGG | + | chr1_4:42095730-42095749 | Msa0163760:intron | 30.0% |
| !! | TTTGTTGTTTGATTTGCAGT+TGG | + | chr1_4:42095755-42095774 | Msa0163760:intron | 30.0% |
| ! | GATGATGTAAGTTCTTTTTC+TGG | + | chr1_4:42095992-42096011 | Msa0163760:CDS | 30.0% |
| TTATATGTATGCGCTATAAG+TGG | + | chr1_4:42096059-42096078 | Msa0163760:CDS | 30.0% | |
| !!! | AGTGGTTTTAAACTTGCATT+TGG | + | chr1_4:42096077-42096096 | Msa0163760:intron | 30.0% |
| !! | GTTTTAAACTTGCATTTGGT+TGG | + | chr1_4:42096081-42096100 | Msa0163760:intron | 30.0% |
| !! | AAGGTTCTTGATTTGTACTT+AGG | + | chr1_4:42096144-42096163 | Msa0163760:intron | 30.0% |
| TTCACCATATATATCAAGAG+CGG | - | chr1_4:42096296-42096315 | None:intergenic | 30.0% | |
| TGAACTGTGATTAATAGCTA+TGG | + | chr1_4:42096436-42096455 | Msa0163760:intron | 30.0% | |
| AACATTACAGTTGTATAGCA+AGG | - | chr1_4:42096582-42096601 | None:intergenic | 30.0% | |
| ! | AACTGTAATGTTTTATGGGT+TGG | + | chr1_4:42096590-42096609 | Msa0163760:intron | 30.0% |
| CAAATAAGAAACGAAATGTC+TGG | - | chr1_4:42096997-42097016 | None:intergenic | 30.0% | |
| GCTAAAGCAATAGAAATTGA+TGG | + | chr1_4:42097021-42097040 | Msa0163760:three_prime_UTR | 30.0% | |
| CTGTGTATCAATATATTCGA+GGG | - | chr1_4:42097109-42097128 | None:intergenic | 30.0% | |
| CTTCTAATTGAATGTGTGTC+CGG | - | chr1_4:42095649-42095668 | None:intergenic | 35.0% | |
| AGCAGTGTTGCATAATTTAG+CGG | + | chr1_4:42096208-42096227 | Msa0163760:intron | 35.0% | |
| ACTAGCCATTATGAAAAACC+CGG | + | chr1_4:42096233-42096252 | Msa0163760:intron | 35.0% | |
| TACTAAAACCGTAATGCAAC+CGG | - | chr1_4:42096255-42096274 | None:intergenic | 35.0% | |
| TACACCGCTCTTGATATATA+TGG | + | chr1_4:42096289-42096308 | Msa0163760:intron | 35.0% | |
| ! | ACTTCAAAAGTACAAGTTGG+GGG | - | chr1_4:42096342-42096361 | None:intergenic | 35.0% |
| ! | CACTTCAAAAGTACAAGTTG+GGG | - | chr1_4:42096343-42096362 | None:intergenic | 35.0% |
| ! | CCACTTCAAAAGTACAAGTT+GGG | - | chr1_4:42096344-42096363 | None:intergenic | 35.0% |
| ! | ACCACTTCAAAAGTACAAGT+TGG | - | chr1_4:42096345-42096364 | None:intergenic | 35.0% |
| TGATTCTATGAAGTCAATGG+CGG | - | chr1_4:42096633-42096652 | None:intergenic | 35.0% | |
| GAGTGATTCTATGAAGTCAA+TGG | - | chr1_4:42096636-42096655 | None:intergenic | 35.0% | |
| ! | TTTTCTTGCAATGCAGGATA+TGG | + | chr1_4:42096784-42096803 | Msa0163760:intron | 35.0% |
| TTTCTTGCAATGCAGGATAT+GGG | + | chr1_4:42096785-42096804 | Msa0163760:intron | 35.0% | |
| GCTGTGTATCAATATATTCG+AGG | - | chr1_4:42097110-42097129 | None:intergenic | 35.0% | |
| CTTCTAATTGAATGTGTGTC+CGG | - | chr1_4:42095649-42095668 | None:intergenic | 35.0% | |
| AGCAGTGTTGCATAATTTAG+CGG | + | chr1_4:42096208-42096227 | Msa0163760:intron | 35.0% | |
| ACTAGCCATTATGAAAAACC+CGG | + | chr1_4:42096233-42096252 | Msa0163760:intron | 35.0% | |
| TACTAAAACCGTAATGCAAC+CGG | - | chr1_4:42096255-42096274 | None:intergenic | 35.0% | |
| TACACCGCTCTTGATATATA+TGG | + | chr1_4:42096289-42096308 | Msa0163760:intron | 35.0% | |
| ! | ACTTCAAAAGTACAAGTTGG+GGG | - | chr1_4:42096342-42096361 | None:intergenic | 35.0% |
| ! | CACTTCAAAAGTACAAGTTG+GGG | - | chr1_4:42096343-42096362 | None:intergenic | 35.0% |
| ! | CCACTTCAAAAGTACAAGTT+GGG | - | chr1_4:42096344-42096363 | None:intergenic | 35.0% |
| ! | ACCACTTCAAAAGTACAAGT+TGG | - | chr1_4:42096345-42096364 | None:intergenic | 35.0% |
| TGATTCTATGAAGTCAATGG+CGG | - | chr1_4:42096633-42096652 | None:intergenic | 35.0% | |
| GAGTGATTCTATGAAGTCAA+TGG | - | chr1_4:42096636-42096655 | None:intergenic | 35.0% | |
| ! | TTTTCTTGCAATGCAGGATA+TGG | + | chr1_4:42096784-42096803 | Msa0163760:intron | 35.0% |
| TTTCTTGCAATGCAGGATAT+GGG | + | chr1_4:42096785-42096804 | Msa0163760:intron | 35.0% | |
| GCTGTGTATCAATATATTCG+AGG | - | chr1_4:42097110-42097129 | None:intergenic | 35.0% | |
| AACCTTCATCTTTACGCTGA+CGG | - | chr1_4:42095176-42095195 | None:intergenic | 40.0% | |
| AAAACCATCAAGGACATCCT+CGG | + | chr1_4:42095247-42095266 | Msa0163760:CDS | 40.0% | |
| TATTCGACATTGACCTGTGT+TGG | + | chr1_4:42095620-42095639 | Msa0163760:intron | 40.0% | |
| TAAGGGCAAAGATATAGCTG+AGG | + | chr1_4:42095823-42095842 | Msa0163760:CDS | 40.0% | |
| ATAGCTGAGGTTATTGCTTC+TGG | + | chr1_4:42095836-42095855 | Msa0163760:CDS | 40.0% | |
| TGAGGTTATTGCTTCTGGTA+GGG | + | chr1_4:42095841-42095860 | Msa0163760:CDS | 40.0% | |
| ATTATGCAACACTGCTACAG+CGG | - | chr1_4:42096204-42096223 | None:intergenic | 40.0% | |
| ! | GGGTTTTTCATAATGGCTAG+TGG | - | chr1_4:42096234-42096253 | None:intergenic | 40.0% |
| ! | TGCAACCGGGTTTTTCATAA+TGG | - | chr1_4:42096241-42096260 | None:intergenic | 40.0% |
| TGAAAAACCCGGTTGCATTA+CGG | + | chr1_4:42096244-42096263 | Msa0163760:intron | 40.0% | |
| ACTAAAACCGTAATGCAACC+GGG | - | chr1_4:42096254-42096273 | None:intergenic | 40.0% | |
| AGCGGTGTAATTGCTATAGA+TGG | - | chr1_4:42096278-42096297 | None:intergenic | 40.0% | |
| !! | CCCAACTTGTACTTTTGAAG+TGG | + | chr1_4:42096341-42096360 | Msa0163760:intron | 40.0% |
| TTTGCCAAACTTTGACGTAG+TGG | + | chr1_4:42096546-42096565 | Msa0163760:intron | 40.0% | |
| ATGACCACTACGTCAAAGTT+TGG | - | chr1_4:42096553-42096572 | None:intergenic | 40.0% | |
| TACAGTTGTATAGCAAGGCA+TGG | - | chr1_4:42096577-42096596 | None:intergenic | 40.0% | |
| !!! | CGACTTTTTTCTTGCAATGC+AGG | + | chr1_4:42096778-42096797 | Msa0163760:intron | 40.0% |
| TCAATATATTCGAGGGCAAC+TGG | - | chr1_4:42097102-42097121 | None:intergenic | 40.0% | |
| AACCTTCATCTTTACGCTGA+CGG | - | chr1_4:42095176-42095195 | None:intergenic | 40.0% | |
| AAAACCATCAAGGACATCCT+CGG | + | chr1_4:42095247-42095266 | Msa0163760:CDS | 40.0% | |
| TATTCGACATTGACCTGTGT+TGG | + | chr1_4:42095620-42095639 | Msa0163760:intron | 40.0% | |
| TAAGGGCAAAGATATAGCTG+AGG | + | chr1_4:42095823-42095842 | Msa0163760:CDS | 40.0% | |
| ATAGCTGAGGTTATTGCTTC+TGG | + | chr1_4:42095836-42095855 | Msa0163760:CDS | 40.0% | |
| TGAGGTTATTGCTTCTGGTA+GGG | + | chr1_4:42095841-42095860 | Msa0163760:CDS | 40.0% | |
| ATTATGCAACACTGCTACAG+CGG | - | chr1_4:42096204-42096223 | None:intergenic | 40.0% | |
| ! | GGGTTTTTCATAATGGCTAG+TGG | - | chr1_4:42096234-42096253 | None:intergenic | 40.0% |
| ! | TGCAACCGGGTTTTTCATAA+TGG | - | chr1_4:42096241-42096260 | None:intergenic | 40.0% |
| TGAAAAACCCGGTTGCATTA+CGG | + | chr1_4:42096244-42096263 | Msa0163760:intron | 40.0% | |
| ACTAAAACCGTAATGCAACC+GGG | - | chr1_4:42096254-42096273 | None:intergenic | 40.0% | |
| AGCGGTGTAATTGCTATAGA+TGG | - | chr1_4:42096278-42096297 | None:intergenic | 40.0% | |
| !! | CCCAACTTGTACTTTTGAAG+TGG | + | chr1_4:42096341-42096360 | Msa0163760:intron | 40.0% |
| TTTGCCAAACTTTGACGTAG+TGG | + | chr1_4:42096546-42096565 | Msa0163760:intron | 40.0% | |
| ATGACCACTACGTCAAAGTT+TGG | - | chr1_4:42096553-42096572 | None:intergenic | 40.0% | |
| TACAGTTGTATAGCAAGGCA+TGG | - | chr1_4:42096577-42096596 | None:intergenic | 40.0% | |
| !!! | CGACTTTTTTCTTGCAATGC+AGG | + | chr1_4:42096778-42096797 | Msa0163760:intron | 40.0% |
| TCAATATATTCGAGGGCAAC+TGG | - | chr1_4:42097102-42097121 | None:intergenic | 40.0% | |
| ACCAAGAACAGCGAGCAAAT+AGG | - | chr1_4:42095206-42095225 | None:intergenic | 45.0% | |
| TATTTGCTCGCTGTTCTTGG+TGG | + | chr1_4:42095205-42095224 | Msa0163760:CDS | 45.0% | |
| !!! | GATGTCCTTGATGGTTTTGG+CGG | - | chr1_4:42095245-42095264 | None:intergenic | 45.0% |
| !! | GAGGATGTCCTTGATGGTTT+TGG | - | chr1_4:42095248-42095267 | None:intergenic | 45.0% |
| ! | AAGGTGTCACGTCAAATCAG+TGG | - | chr1_4:42095692-42095711 | None:intergenic | 45.0% |
| TGATTTGACGTGACACCTTG+AGG | + | chr1_4:42095693-42095712 | Msa0163760:intron | 45.0% | |
| GATTTGACGTGACACCTTGA+GGG | + | chr1_4:42095694-42095713 | Msa0163760:intron | 45.0% | |
| ATTTGACGTGACACCTTGAG+GGG | + | chr1_4:42095695-42095714 | Msa0163760:intron | 45.0% | |
| CTGAGGTTATTGCTTCTGGT+AGG | + | chr1_4:42095840-42095859 | Msa0163760:CDS | 45.0% | |
| TGCTTCTGGTAGGGAAAAGT+TGG | + | chr1_4:42095850-42095869 | Msa0163760:CDS | 45.0% | |
| AAGTTGGCATCAGTTCCTTC+TGG | + | chr1_4:42095866-42095885 | Msa0163760:CDS | 45.0% | |
| TGAGGCAAAGAAAGAGGAGA+AGG | + | chr1_4:42095949-42095968 | Msa0163760:CDS | 45.0% | |
| ! | AGCTTTGATCAATCCCCTGT+AGG | + | chr1_4:42096169-42096188 | Msa0163760:intron | 45.0% |
| ACCAAGAACAGCGAGCAAAT+AGG | - | chr1_4:42095206-42095225 | None:intergenic | 45.0% | |
| TATTTGCTCGCTGTTCTTGG+TGG | + | chr1_4:42095205-42095224 | Msa0163760:CDS | 45.0% | |
| !!! | GATGTCCTTGATGGTTTTGG+CGG | - | chr1_4:42095245-42095264 | None:intergenic | 45.0% |
| !! | GAGGATGTCCTTGATGGTTT+TGG | - | chr1_4:42095248-42095267 | None:intergenic | 45.0% |
| ! | AAGGTGTCACGTCAAATCAG+TGG | - | chr1_4:42095692-42095711 | None:intergenic | 45.0% |
| TGATTTGACGTGACACCTTG+AGG | + | chr1_4:42095693-42095712 | Msa0163760:intron | 45.0% | |
| GATTTGACGTGACACCTTGA+GGG | + | chr1_4:42095694-42095713 | Msa0163760:intron | 45.0% | |
| ATTTGACGTGACACCTTGAG+GGG | + | chr1_4:42095695-42095714 | Msa0163760:intron | 45.0% | |
| CTGAGGTTATTGCTTCTGGT+AGG | + | chr1_4:42095840-42095859 | Msa0163760:CDS | 45.0% | |
| TGCTTCTGGTAGGGAAAAGT+TGG | + | chr1_4:42095850-42095869 | Msa0163760:CDS | 45.0% | |
| AAGTTGGCATCAGTTCCTTC+TGG | + | chr1_4:42095866-42095885 | Msa0163760:CDS | 45.0% | |
| TGAGGCAAAGAAAGAGGAGA+AGG | + | chr1_4:42095949-42095968 | Msa0163760:CDS | 45.0% | |
| ! | AGCTTTGATCAATCCCCTGT+AGG | + | chr1_4:42096169-42096188 | Msa0163760:intron | 45.0% |
| !!! | ATTTTAATAATTTGATAAAT+CGG | + | chr1_4:42095388-42095407 | Msa0163760:intron | 5.0% |
| !!! | AAAATTTATTTTCTTTTTAT+TGG | + | chr1_4:42096395-42096414 | Msa0163760:intron | 5.0% |
| !!! | ATTTTAATAATTTGATAAAT+CGG | + | chr1_4:42095388-42095407 | Msa0163760:intron | 5.0% |
| !!! | AAAATTTATTTTCTTTTTAT+TGG | + | chr1_4:42096395-42096414 | Msa0163760:intron | 5.0% |
| GCCTATTTGCTCGCTGTTCT+TGG | + | chr1_4:42095202-42095221 | Msa0163760:CDS | 50.0% | |
| !!! | TCCTTGATGGTTTTGGCGGA+GGG | - | chr1_4:42095241-42095260 | None:intergenic | 50.0% |
| ATCAAGGACATCCTCGGATC+CGG | + | chr1_4:42095253-42095272 | Msa0163760:CDS | 50.0% | |
| CATTGACCTGTGTTGGACAC+CGG | + | chr1_4:42095627-42095646 | Msa0163760:intron | 50.0% | |
| GAGCAGACGCAGAAGATGAT+AGG | + | chr1_4:42095777-42095796 | Msa0163760:CDS | 50.0% | |
| TTGGCATCAGTTCCTTCTGG+TGG | + | chr1_4:42095869-42095888 | Msa0163760:CDS | 50.0% | |
| AGCTGCTGAGGCAAAGAAAG+AGG | + | chr1_4:42095943-42095962 | Msa0163760:CDS | 50.0% | |
| GGCAAAGAAAGAGGAGAAGG+TGG | + | chr1_4:42095952-42095971 | Msa0163760:CDS | 50.0% | |
| !! | CAATGGCGGATAGTGATGTG+TGG | - | chr1_4:42096619-42096638 | None:intergenic | 50.0% |
| GCCTATTTGCTCGCTGTTCT+TGG | + | chr1_4:42095202-42095221 | Msa0163760:CDS | 50.0% | |
| !!! | TCCTTGATGGTTTTGGCGGA+GGG | - | chr1_4:42095241-42095260 | None:intergenic | 50.0% |
| ATCAAGGACATCCTCGGATC+CGG | + | chr1_4:42095253-42095272 | Msa0163760:CDS | 50.0% | |
| CATTGACCTGTGTTGGACAC+CGG | + | chr1_4:42095627-42095646 | Msa0163760:intron | 50.0% | |
| GAGCAGACGCAGAAGATGAT+AGG | + | chr1_4:42095777-42095796 | Msa0163760:CDS | 50.0% | |
| TTGGCATCAGTTCCTTCTGG+TGG | + | chr1_4:42095869-42095888 | Msa0163760:CDS | 50.0% | |
| AGCTGCTGAGGCAAAGAAAG+AGG | + | chr1_4:42095943-42095962 | Msa0163760:CDS | 50.0% | |
| GGCAAAGAAAGAGGAGAAGG+TGG | + | chr1_4:42095952-42095971 | Msa0163760:CDS | 50.0% | |
| !! | CAATGGCGGATAGTGATGTG+TGG | - | chr1_4:42096619-42096638 | None:intergenic | 50.0% |
| CGCCGTCAGCGTAAAGATGA+AGG | + | chr1_4:42095171-42095190 | Msa0163760:exon | 55.0% | |
| !!! | CTTGATGGTTTTGGCGGAGG+GGG | - | chr1_4:42095239-42095258 | None:intergenic | 55.0% |
| !!! | CCTTGATGGTTTTGGCGGAG+GGG | - | chr1_4:42095240-42095259 | None:intergenic | 55.0% |
| !!! | GTCCTTGATGGTTTTGGCGG+AGG | - | chr1_4:42095242-42095261 | None:intergenic | 55.0% |
| GGATCCGAGGATGTCCTTGA+TGG | - | chr1_4:42095254-42095273 | None:intergenic | 55.0% | |
| GAAGAAACGAACCGGATCCG+AGG | - | chr1_4:42095267-42095286 | None:intergenic | 55.0% | |
| CAGCGAGTTCAAACCCCTCA+AGG | - | chr1_4:42095711-42095730 | None:intergenic | 55.0% | |
| GCATCAGTTCCTTCTGGTGG+TGG | + | chr1_4:42095872-42095891 | Msa0163760:CDS | 55.0% | |
| !! | TCAGTTCCTTCTGGTGGTGG+CGG | + | chr1_4:42095875-42095894 | Msa0163760:CDS | 55.0% |
| TTCTTTGCCTCAGCAGCTGC+AGG | - | chr1_4:42095941-42095960 | None:intergenic | 55.0% | |
| AGCGGTTGCGATTGCCTACA+GGG | - | chr1_4:42096186-42096205 | None:intergenic | 55.0% | |
| CGCCGTCAGCGTAAAGATGA+AGG | + | chr1_4:42095171-42095190 | Msa0163760:exon | 55.0% | |
| !!! | CTTGATGGTTTTGGCGGAGG+GGG | - | chr1_4:42095239-42095258 | None:intergenic | 55.0% |
| !!! | CCTTGATGGTTTTGGCGGAG+GGG | - | chr1_4:42095240-42095259 | None:intergenic | 55.0% |
| !!! | GTCCTTGATGGTTTTGGCGG+AGG | - | chr1_4:42095242-42095261 | None:intergenic | 55.0% |
| GGATCCGAGGATGTCCTTGA+TGG | - | chr1_4:42095254-42095273 | None:intergenic | 55.0% | |
| GAAGAAACGAACCGGATCCG+AGG | - | chr1_4:42095267-42095286 | None:intergenic | 55.0% | |
| CAGCGAGTTCAAACCCCTCA+AGG | - | chr1_4:42095711-42095730 | None:intergenic | 55.0% | |
| GCATCAGTTCCTTCTGGTGG+TGG | + | chr1_4:42095872-42095891 | Msa0163760:CDS | 55.0% | |
| !! | TCAGTTCCTTCTGGTGGTGG+CGG | + | chr1_4:42095875-42095894 | Msa0163760:CDS | 55.0% |
| TTCTTTGCCTCAGCAGCTGC+AGG | - | chr1_4:42095941-42095960 | None:intergenic | 55.0% | |
| AGCGGTTGCGATTGCCTACA+GGG | - | chr1_4:42096186-42096205 | None:intergenic | 55.0% | |
| CCCCTCCGCCAAAACCATCA+AGG | + | chr1_4:42095237-42095256 | Msa0163760:CDS | 60.0% | |
| GTGTGTCCGGTGTCCAACAC+AGG | - | chr1_4:42095636-42095655 | None:intergenic | 60.0% | |
| GCGGTTGCGATTGCCTACAG+GGG | - | chr1_4:42096185-42096204 | None:intergenic | 60.0% | |
| CAGCGGTTGCGATTGCCTAC+AGG | - | chr1_4:42096187-42096206 | None:intergenic | 60.0% | |
| CCCCTCCGCCAAAACCATCA+AGG | + | chr1_4:42095237-42095256 | Msa0163760:CDS | 60.0% | |
| GTGTGTCCGGTGTCCAACAC+AGG | - | chr1_4:42095636-42095655 | None:intergenic | 60.0% | |
| GCGGTTGCGATTGCCTACAG+GGG | - | chr1_4:42096185-42096204 | None:intergenic | 60.0% | |
| CAGCGGTTGCGATTGCCTAC+AGG | - | chr1_4:42096187-42096206 | None:intergenic | 60.0% | |
| GCAACACCGCCACCACCAGA+AGG | - | chr1_4:42095884-42095903 | None:intergenic | 65.0% | |
| GTTGCTGCTGCACCTGCGAG+TGG | + | chr1_4:42095905-42095924 | Msa0163760:CDS | 65.0% | |
| TGCTGCTCCTGCAGCTGCTG+AGG | + | chr1_4:42095931-42095950 | Msa0163760:CDS | 65.0% | |
| GCAACACCGCCACCACCAGA+AGG | - | chr1_4:42095884-42095903 | None:intergenic | 65.0% | |
| GTTGCTGCTGCACCTGCGAG+TGG | + | chr1_4:42095905-42095924 | Msa0163760:CDS | 65.0% | |
| TGCTGCTCCTGCAGCTGCTG+AGG | + | chr1_4:42095931-42095950 | Msa0163760:CDS | 65.0% | |
| GCTGCTGCACCTGCGAGTGG+TGG | + | chr1_4:42095908-42095927 | Msa0163760:CDS | 70.0% | |
| GGAGCAGCACCACCACTCGC+AGG | - | chr1_4:42095920-42095939 | None:intergenic | 70.0% | |
| GCTGCTGCACCTGCGAGTGG+TGG | + | chr1_4:42095908-42095927 | Msa0163760:CDS | 70.0% | |
| GGAGCAGCACCACCACTCGC+AGG | - | chr1_4:42095920-42095939 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 42095054 | 42097140 | 42095054 | ID=Msa0163760;Name=Msa0163760 |
| chr1_4 | mRNA | 42095054 | 42097140 | 42095054 | ID=Msa0163760-mRNA-1;Parent=Msa0163760;Name=Msa0163760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=133|0.5|0.66|1|0.5|0.66|3|271|154 |
| chr1_4 | exon | 42095054 | 42095274 | 42095054 | ID=Msa0163760-mRNA-1:exon:12188;Parent=Msa0163760-mRNA-1 |
| chr1_4 | exon | 42095774 | 42096080 | 42095774 | ID=Msa0163760-mRNA-1:exon:12189;Parent=Msa0163760-mRNA-1 |
| chr1_4 | exon | 42096800 | 42097140 | 42096800 | ID=Msa0163760-mRNA-1:exon:12190;Parent=Msa0163760-mRNA-1 |
| chr1_4 | five_prime_UTR | 42095054 | 42095186 | 42095054 | ID=Msa0163760-mRNA-1:five_prime_utr;Parent=Msa0163760-mRNA-1 |
| chr1_4 | CDS | 42095187 | 42095274 | 42095187 | ID=Msa0163760-mRNA-1:cds;Parent=Msa0163760-mRNA-1 |
| chr1_4 | CDS | 42095774 | 42096080 | 42095774 | ID=Msa0163760-mRNA-1:cds;Parent=Msa0163760-mRNA-1 |
| chr1_4 | CDS | 42096800 | 42096869 | 42096800 | ID=Msa0163760-mRNA-1:cds;Parent=Msa0163760-mRNA-1 |
| chr1_4 | three_prime_UTR | 42096870 | 42097140 | 42096870 | ID=Msa0163760-mRNA-1:three_prime_utr;Parent=Msa0163760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
