AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0531650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531650 MtrunA17_Chr4g0004631 100.000 95 0 0 1 95 1 95 3.16e-65 191
Msa0531650 MtrunA17_Chr2g0331701 96.809 94 3 0 1 94 1 94 1.10e-62 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531650 AT1G52300.1 89.362 94 10 0 1 94 1 94 1.72e-57 172
Msa0531650 AT3G16080.1 88.298 94 11 0 1 94 1 94 4.23e-57 171
Msa0531650 AT1G15250.2 87.368 95 12 0 1 95 1 95 7.56e-57 170
Msa0531650 AT1G15250.1 87.368 95 12 0 1 95 1 95 7.56e-57 170
Msa0531650 AT3G16080.2 93.333 45 3 0 1 45 1 45 9.79e-25 89.0

Find 45 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACGCAGTCTCTCTGATT+AGG 0.241536 4_1:+5769797 Msa0531650:five_prime_UTR
AGCAGCTGCTCCCTTGTTCC+TGG 0.247813 4_1:-5771331 None:intergenic
TTTAATTATGTTACAATGTC+AGG 0.318963 4_1:+5771486 Msa0531650:three_prime_UTR
ACTGGAGTGAGAAGGCTATT+AGG 0.322324 4_1:+5770309 Msa0531650:CDS
ATTGTGTGATTTCAGATAAC+TGG 0.324608 4_1:+5770291 Msa0531650:intron
GCTGCTTCTACCTAAGTCTT+TGG 0.329136 4_1:+5771348 Msa0531650:exon
TAACGCAGTCTCTCTGATTA+GGG 0.350042 4_1:+5769798 Msa0531650:five_prime_UTR
TTGCTGGGCTAATTAATGAT+AGG 0.376503 4_1:+5771382 Msa0531650:three_prime_UTR
ATGCTGAGCAGCGACTCTTC+TGG 0.400063 4_1:-5770080 None:intergenic
AATTTATATATGAACTCAAA+TGG 0.404538 4_1:-5769764 None:intergenic
ATTAAATTCATATTGAAAGA+AGG 0.420357 4_1:-5771469 None:intergenic
AGACCCACACACTCTGTGTT+AGG 0.433282 4_1:+5770034 Msa0531650:CDS
GCAGCTGCTCCCTTGTTCCT+GGG 0.437974 4_1:-5771330 None:intergenic
CTTATCCAGCTGCACGTGTC+AGG 0.448216 4_1:+5770106 Msa0531650:CDS
GGTAAGGGAACAGGCAGTTT+CGG 0.454393 4_1:+5769997 Msa0531650:CDS
TTAAATTCATATTGAAAGAA+GGG 0.463210 4_1:-5771468 None:intergenic
AGGAGAAAGACCACTGGAAC+TGG 0.467139 4_1:+5770329 Msa0531650:CDS
ATTTATATATGAACTCAAAT+GGG 0.468765 4_1:-5769763 None:intergenic
CATTTCCTGACACGTGCAGC+TGG 0.473916 4_1:-5770111 None:intergenic
AAGCAATGTTCCAAAGACTT+AGG 0.510606 4_1:-5771358 None:intergenic
TATGTAGACGAAGCAGAAGC+AGG 0.548451 4_1:-5769828 None:intergenic
AGGGAAATGAAAACAACAGA+TGG 0.548538 4_1:-5771449 None:intergenic
TGAAGCTGCACCCAGGAACA+AGG 0.550050 4_1:+5771320 Msa0531650:CDS
AACACGTGACTTGAGTTGGC+CGG 0.555165 4_1:+5771600 Msa0531650:three_prime_UTR
AGCAGCGACTCTTCTGGAGA+TGG 0.555977 4_1:-5770074 None:intergenic
TTATAACACGTGACTTGAGT+TGG 0.564455 4_1:+5771596 Msa0531650:three_prime_UTR
CACACCTAACACAGAGTGTG+TGG 0.573805 4_1:-5770038 None:intergenic
TTCAAGAGTGGATTCAGAGA+AGG 0.583941 4_1:+5770386 Msa0531650:CDS
TGTTAAATGAGAATTTGAGT+TGG 0.601919 4_1:+5771527 Msa0531650:three_prime_UTR
TTCAGATAACTGGAGTGAGA+AGG 0.609846 4_1:+5770301 Msa0531650:intron
CAGGCAGTTTCGGTAAGAGA+AGG 0.615161 4_1:+5770007 Msa0531650:CDS
CCACTGGAACTGGTAGGATG+AGG 0.619264 4_1:+5770339 Msa0531650:CDS
GCTATTAGGAGAAAGACCAC+TGG 0.627964 4_1:+5770323 Msa0531650:CDS
CTGGTAGGATGAGGTACTTG+AGG 0.643276 4_1:+5770348 Msa0531650:CDS
CACACACTCTGTGTTAGGTG+TGG 0.644280 4_1:+5770039 Msa0531650:CDS
GAAAGACCACTGGAACTGGT+AGG 0.652178 4_1:+5770333 Msa0531650:CDS
GAAGCTGCACCCAGGAACAA+GGG 0.652652 4_1:+5771321 Msa0531650:CDS
TCTGGAGATGGAAACTGCGA+CGG 0.655757 4_1:-5770062 None:intergenic
CCTCATCCTACCAGTTCCAG+TGG 0.656605 4_1:-5770339 None:intergenic
CAGGTACTGAAGCTGCACCC+AGG 0.673244 4_1:+5771313 Msa0531650:intron
GCTTCGTCTACATACAACAA+TGG 0.682607 4_1:+5769837 Msa0531650:exon
ACACCTAACACAGAGTGTGT+GGG 0.685746 4_1:-5770037 None:intergenic
GTGCCTCGCAGATTCAAGAG+TGG 0.690811 4_1:+5770374 Msa0531650:CDS
AATCCACTCTTGAATCTGCG+AGG 0.695196 4_1:-5770377 None:intergenic
GTAGACGAAGCAGAAGCAGG+TGG 0.697045 4_1:-5769825 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGATTTTTGTATTT+GGG + chr4_1:5770260-5770279 Msa0531650:intron 10.0%
!!! AAAATTTGATTTTTGTATTT+GGG + chr4_1:5770260-5770279 Msa0531650:intron 10.0%
!! ATTTATAGAAGAAAAAAAAC+TGG + chr4_1:5769702-5769721 Msa0531650:five_prime_UTR 15.0%
!! TTTATAGAAGAAAAAAAACT+GGG + chr4_1:5769703-5769722 Msa0531650:five_prime_UTR 15.0%
!! ATTTATATATGAACTCAAAT+GGG - chr4_1:5769766-5769785 None:intergenic 15.0%
!! AATTTATATATGAACTCAAA+TGG - chr4_1:5769767-5769786 None:intergenic 15.0%
!!! ATTTTTGTGTTTTTAGATTT+AGG + chr4_1:5770183-5770202 Msa0531650:intron 15.0%
!!! TTTTTGTGTTTTTAGATTTA+GGG + chr4_1:5770184-5770203 Msa0531650:intron 15.0%
!!! CAAAATTTGATTTTTGTATT+TGG + chr4_1:5770259-5770278 Msa0531650:intron 15.0%
!!! TTCTAGAATTATCATTTTTT+TGG + chr4_1:5770578-5770597 Msa0531650:intron 15.0%
!! TTGAAAAAACCTAATAAAAA+TGG + chr4_1:5770908-5770927 Msa0531650:intron 15.0%
!! TTTGTTGATATGATTATTAT+TGG + chr4_1:5771284-5771303 Msa0531650:intron 15.0%
!! TTAAATTCATATTGAAAGAA+GGG - chr4_1:5771471-5771490 None:intergenic 15.0%
!! ATTAAATTCATATTGAAAGA+AGG - chr4_1:5771472-5771491 None:intergenic 15.0%
!! ATAATAACAAAAAATACTCA+TGG - chr4_1:5771580-5771599 None:intergenic 15.0%
!! ATTTATAGAAGAAAAAAAAC+TGG + chr4_1:5769702-5769721 Msa0531650:five_prime_UTR 15.0%
!! TTTATAGAAGAAAAAAAACT+GGG + chr4_1:5769703-5769722 Msa0531650:five_prime_UTR 15.0%
!! ATTTATATATGAACTCAAAT+GGG - chr4_1:5769766-5769785 None:intergenic 15.0%
!! AATTTATATATGAACTCAAA+TGG - chr4_1:5769767-5769786 None:intergenic 15.0%
!!! ATTTTTGTGTTTTTAGATTT+AGG + chr4_1:5770183-5770202 Msa0531650:intron 15.0%
!!! TTTTTGTGTTTTTAGATTTA+GGG + chr4_1:5770184-5770203 Msa0531650:intron 15.0%
!!! CAAAATTTGATTTTTGTATT+TGG + chr4_1:5770259-5770278 Msa0531650:intron 15.0%
!!! TTCTAGAATTATCATTTTTT+TGG + chr4_1:5770578-5770597 Msa0531650:intron 15.0%
!! TTGAAAAAACCTAATAAAAA+TGG + chr4_1:5770908-5770927 Msa0531650:intron 15.0%
!! TTTGTTGATATGATTATTAT+TGG + chr4_1:5771284-5771303 Msa0531650:intron 15.0%
!! TTAAATTCATATTGAAAGAA+GGG - chr4_1:5771471-5771490 None:intergenic 15.0%
!! ATTAAATTCATATTGAAAGA+AGG - chr4_1:5771472-5771491 None:intergenic 15.0%
!! ATAATAACAAAAAATACTCA+TGG - chr4_1:5771580-5771599 None:intergenic 15.0%
!!! ATTATTGAATGATTTTTGCA+GGG + chr4_1:5769976-5769995 Msa0531650:intron 20.0%
!!! TTTTGTTCGATTTTAGAAAA+TGG + chr4_1:5770142-5770161 Msa0531650:intron 20.0%
!!! TTTGTTCGATTTTAGAAAAT+GGG + chr4_1:5770143-5770162 Msa0531650:intron 20.0%
!!! TGTTTTTTGATTTTCGAAAA+TGG + chr4_1:5770228-5770247 Msa0531650:intron 20.0%
!!! GTTTTTTGATTTTCGAAAAT+GGG + chr4_1:5770229-5770248 Msa0531650:intron 20.0%
!! ATTTAATTGATTGATCAATC+AGG + chr4_1:5770548-5770567 Msa0531650:intron 20.0%
!! TACAACTAAATAAAGAGATT+TGG - chr4_1:5770719-5770738 None:intergenic 20.0%
!!! ATTTTGACATGTTTTACTAT+AGG + chr4_1:5771094-5771113 Msa0531650:intron 20.0%
!! TTTAATTATGTTACAATGTC+AGG + chr4_1:5771486-5771505 Msa0531650:three_prime_UTR 20.0%
!!! ATTATTGAATGATTTTTGCA+GGG + chr4_1:5769976-5769995 Msa0531650:intron 20.0%
!!! TTTTGTTCGATTTTAGAAAA+TGG + chr4_1:5770142-5770161 Msa0531650:intron 20.0%
!!! TTTGTTCGATTTTAGAAAAT+GGG + chr4_1:5770143-5770162 Msa0531650:intron 20.0%
!!! TGTTTTTTGATTTTCGAAAA+TGG + chr4_1:5770228-5770247 Msa0531650:intron 20.0%
!!! GTTTTTTGATTTTCGAAAAT+GGG + chr4_1:5770229-5770248 Msa0531650:intron 20.0%
!! ATTTAATTGATTGATCAATC+AGG + chr4_1:5770548-5770567 Msa0531650:intron 20.0%
!! TACAACTAAATAAAGAGATT+TGG - chr4_1:5770719-5770738 None:intergenic 20.0%
!!! ATTTTGACATGTTTTACTAT+AGG + chr4_1:5771094-5771113 Msa0531650:intron 20.0%
!! TTTAATTATGTTACAATGTC+AGG + chr4_1:5771486-5771505 Msa0531650:three_prime_UTR 20.0%
!! GATTATTGAATGATTTTTGC+AGG + chr4_1:5769975-5769994 Msa0531650:intron 25.0%
!!! GTTACTAAATGAGTTGATTT+AGG + chr4_1:5770689-5770708 Msa0531650:intron 25.0%
!!! TTTAGTTGTAGCAACTTTTT+TGG + chr4_1:5770729-5770748 Msa0531650:intron 25.0%
!!! TTAGTTGTAGCAACTTTTTT+GGG + chr4_1:5770730-5770749 Msa0531650:intron 25.0%
!!! AGCTTATGACCATTTTTATT+AGG - chr4_1:5770920-5770939 None:intergenic 25.0%
! ATTCACATAAAACAGAGATT+TGG - chr4_1:5771138-5771157 None:intergenic 25.0%
!!! TTCTGAGTTGTTATTTTTTC+TGG + chr4_1:5771253-5771272 Msa0531650:intron 25.0%
!! TGATTATTATTGGTTAAACC+AGG + chr4_1:5771294-5771313 Msa0531650:intron 25.0%
!!! AGGAGTTAAGATTTTTGTTT+AGG + chr4_1:5771402-5771421 Msa0531650:three_prime_UTR 25.0%
!!! GGAGTTAAGATTTTTGTTTA+GGG + chr4_1:5771403-5771422 Msa0531650:three_prime_UTR 25.0%
!!! GAGTTAAGATTTTTGTTTAG+GGG + chr4_1:5771404-5771423 Msa0531650:three_prime_UTR 25.0%
! TGTTAAATGAGAATTTGAGT+TGG + chr4_1:5771527-5771546 Msa0531650:three_prime_UTR 25.0%
! AAAAAATACTCATGGAAACA+AGG - chr4_1:5771572-5771591 None:intergenic 25.0%
!! GATTATTGAATGATTTTTGC+AGG + chr4_1:5769975-5769994 Msa0531650:intron 25.0%
!!! GTTACTAAATGAGTTGATTT+AGG + chr4_1:5770689-5770708 Msa0531650:intron 25.0%
!!! TTTAGTTGTAGCAACTTTTT+TGG + chr4_1:5770729-5770748 Msa0531650:intron 25.0%
!!! TTAGTTGTAGCAACTTTTTT+GGG + chr4_1:5770730-5770749 Msa0531650:intron 25.0%
!!! AGCTTATGACCATTTTTATT+AGG - chr4_1:5770920-5770939 None:intergenic 25.0%
! ATTCACATAAAACAGAGATT+TGG - chr4_1:5771138-5771157 None:intergenic 25.0%
!!! TTCTGAGTTGTTATTTTTTC+TGG + chr4_1:5771253-5771272 Msa0531650:intron 25.0%
!! TGATTATTATTGGTTAAACC+AGG + chr4_1:5771294-5771313 Msa0531650:intron 25.0%
!!! AGGAGTTAAGATTTTTGTTT+AGG + chr4_1:5771402-5771421 Msa0531650:three_prime_UTR 25.0%
!!! GGAGTTAAGATTTTTGTTTA+GGG + chr4_1:5771403-5771422 Msa0531650:three_prime_UTR 25.0%
!!! GAGTTAAGATTTTTGTTTAG+GGG + chr4_1:5771404-5771423 Msa0531650:three_prime_UTR 25.0%
! TGTTAAATGAGAATTTGAGT+TGG + chr4_1:5771527-5771546 Msa0531650:three_prime_UTR 25.0%
! AAAAAATACTCATGGAAACA+AGG - chr4_1:5771572-5771591 None:intergenic 25.0%
AAAAAAAACTGGGCCAATTA+AGG + chr4_1:5769713-5769732 Msa0531650:five_prime_UTR 30.0%
! TTTTACATATGGGCCTTAAT+TGG - chr4_1:5769729-5769748 None:intergenic 30.0%
!! TATGAACTCAAATGGGTTTT+CGG - chr4_1:5769759-5769778 None:intergenic 30.0%
! TAGATTTAGGGTTTAAGTTC+AGG + chr4_1:5770196-5770215 Msa0531650:intron 30.0%
ATTGTGTGATTTCAGATAAC+TGG + chr4_1:5770291-5770310 Msa0531650:intron 30.0%
! AGGTTCTAATTTAGATCAGT+TGG + chr4_1:5770999-5771018 Msa0531650:intron 30.0%
AATTTAGATCAGTTGGATCT+TGG + chr4_1:5771006-5771025 Msa0531650:intron 30.0%
! CTTTTGTTAGCATGATTGTA+TGG + chr4_1:5771214-5771233 Msa0531650:intron 30.0%
AAAAAAAACTGGGCCAATTA+AGG + chr4_1:5769713-5769732 Msa0531650:five_prime_UTR 30.0%
! TTTTACATATGGGCCTTAAT+TGG - chr4_1:5769729-5769748 None:intergenic 30.0%
!! TATGAACTCAAATGGGTTTT+CGG - chr4_1:5769759-5769778 None:intergenic 30.0%
! TAGATTTAGGGTTTAAGTTC+AGG + chr4_1:5770196-5770215 Msa0531650:intron 30.0%
ATTGTGTGATTTCAGATAAC+TGG + chr4_1:5770291-5770310 Msa0531650:intron 30.0%
! AGGTTCTAATTTAGATCAGT+TGG + chr4_1:5770999-5771018 Msa0531650:intron 30.0%
AATTTAGATCAGTTGGATCT+TGG + chr4_1:5771006-5771025 Msa0531650:intron 30.0%
! CTTTTGTTAGCATGATTGTA+TGG + chr4_1:5771214-5771233 Msa0531650:intron 30.0%
!!! CGGGTCTGTTTTTTACATAT+GGG - chr4_1:5769739-5769758 None:intergenic 35.0%
!!! TCGGGTCTGTTTTTTACATA+TGG - chr4_1:5769740-5769759 None:intergenic 35.0%
!! ATGAACTCAAATGGGTTTTC+GGG - chr4_1:5769758-5769777 None:intergenic 35.0%
TCAGACACTGTAATGAAACT+GGG - chr4_1:5769952-5769971 None:intergenic 35.0%
TTCAGACACTGTAATGAAAC+TGG - chr4_1:5769953-5769972 None:intergenic 35.0%
! TGAATGATTTTTGCAGGGTA+AGG + chr4_1:5769981-5770000 Msa0531650:intron 35.0%
! GAATGATTTTTGCAGGGTAA+GGG + chr4_1:5769982-5770001 Msa0531650:intron 35.0%
! TAGGGTTTAAGTTCAGGAAA+TGG + chr4_1:5770202-5770221 Msa0531650:intron 35.0%
GTGCTAGAAAAACTAAACAC+AGG - chr4_1:5770434-5770453 None:intergenic 35.0%
TCAAATAAAGCAATCCATGC+AGG + chr4_1:5770979-5770998 Msa0531650:intron 35.0%
GATCTAAATTAGAACCTGCA+TGG - chr4_1:5770996-5771015 None:intergenic 35.0%
AAGCAATGTTCCAAAGACTT+AGG - chr4_1:5771361-5771380 None:intergenic 35.0%
!!! TTTGGAACATTGCTTTTTGC+TGG + chr4_1:5771366-5771385 Msa0531650:three_prime_UTR 35.0%
!!! TTGGAACATTGCTTTTTGCT+GGG + chr4_1:5771367-5771386 Msa0531650:three_prime_UTR 35.0%
TTGCTGGGCTAATTAATGAT+AGG + chr4_1:5771382-5771401 Msa0531650:three_prime_UTR 35.0%
!! AAGATTTTTGTTTAGGGGCA+TGG + chr4_1:5771409-5771428 Msa0531650:three_prime_UTR 35.0%
AGGGAAATGAAAACAACAGA+TGG - chr4_1:5771452-5771471 None:intergenic 35.0%
TTATAACACGTGACTTGAGT+TGG + chr4_1:5771596-5771615 Msa0531650:three_prime_UTR 35.0%
!!! CGGGTCTGTTTTTTACATAT+GGG - chr4_1:5769739-5769758 None:intergenic 35.0%
!!! TCGGGTCTGTTTTTTACATA+TGG - chr4_1:5769740-5769759 None:intergenic 35.0%
!! ATGAACTCAAATGGGTTTTC+GGG - chr4_1:5769758-5769777 None:intergenic 35.0%
TCAGACACTGTAATGAAACT+GGG - chr4_1:5769952-5769971 None:intergenic 35.0%
TTCAGACACTGTAATGAAAC+TGG - chr4_1:5769953-5769972 None:intergenic 35.0%
! TGAATGATTTTTGCAGGGTA+AGG + chr4_1:5769981-5770000 Msa0531650:intron 35.0%
! GAATGATTTTTGCAGGGTAA+GGG + chr4_1:5769982-5770001 Msa0531650:intron 35.0%
! TAGGGTTTAAGTTCAGGAAA+TGG + chr4_1:5770202-5770221 Msa0531650:intron 35.0%
GTGCTAGAAAAACTAAACAC+AGG - chr4_1:5770434-5770453 None:intergenic 35.0%
TCAAATAAAGCAATCCATGC+AGG + chr4_1:5770979-5770998 Msa0531650:intron 35.0%
GATCTAAATTAGAACCTGCA+TGG - chr4_1:5770996-5771015 None:intergenic 35.0%
AAGCAATGTTCCAAAGACTT+AGG - chr4_1:5771361-5771380 None:intergenic 35.0%
!!! TTTGGAACATTGCTTTTTGC+TGG + chr4_1:5771366-5771385 Msa0531650:three_prime_UTR 35.0%
!!! TTGGAACATTGCTTTTTGCT+GGG + chr4_1:5771367-5771386 Msa0531650:three_prime_UTR 35.0%
TTGCTGGGCTAATTAATGAT+AGG + chr4_1:5771382-5771401 Msa0531650:three_prime_UTR 35.0%
!! AAGATTTTTGTTTAGGGGCA+TGG + chr4_1:5771409-5771428 Msa0531650:three_prime_UTR 35.0%
AGGGAAATGAAAACAACAGA+TGG - chr4_1:5771452-5771471 None:intergenic 35.0%
TTATAACACGTGACTTGAGT+TGG + chr4_1:5771596-5771615 Msa0531650:three_prime_UTR 35.0%
TTAACGCAGTCTCTCTGATT+AGG + chr4_1:5769797-5769816 Msa0531650:five_prime_UTR 40.0%
TAACGCAGTCTCTCTGATTA+GGG + chr4_1:5769798-5769817 Msa0531650:five_prime_UTR 40.0%
GCTTCGTCTACATACAACAA+TGG + chr4_1:5769837-5769856 Msa0531650:exon 40.0%
! CTGTAATGAAACTGGGGTTT+TGG - chr4_1:5769945-5769964 None:intergenic 40.0%
CAGACACTGTAATGAAACTG+GGG - chr4_1:5769951-5769970 None:intergenic 40.0%
TTCAGATAACTGGAGTGAGA+AGG + chr4_1:5770301-5770320 Msa0531650:intron 40.0%
! TTCAAGAGTGGATTCAGAGA+AGG + chr4_1:5770386-5770405 Msa0531650:CDS 40.0%
! AGTTGGATCTTGGTTCTTGT+AGG + chr4_1:5771016-5771035 Msa0531650:intron 40.0%
TTAACGCAGTCTCTCTGATT+AGG + chr4_1:5769797-5769816 Msa0531650:five_prime_UTR 40.0%
TAACGCAGTCTCTCTGATTA+GGG + chr4_1:5769798-5769817 Msa0531650:five_prime_UTR 40.0%
GCTTCGTCTACATACAACAA+TGG + chr4_1:5769837-5769856 Msa0531650:exon 40.0%
! CTGTAATGAAACTGGGGTTT+TGG - chr4_1:5769945-5769964 None:intergenic 40.0%
CAGACACTGTAATGAAACTG+GGG - chr4_1:5769951-5769970 None:intergenic 40.0%
TTCAGATAACTGGAGTGAGA+AGG + chr4_1:5770301-5770320 Msa0531650:intron 40.0%
! TTCAAGAGTGGATTCAGAGA+AGG + chr4_1:5770386-5770405 Msa0531650:CDS 40.0%
! AGTTGGATCTTGGTTCTTGT+AGG + chr4_1:5771016-5771035 Msa0531650:intron 40.0%
TATGTAGACGAAGCAGAAGC+AGG - chr4_1:5769831-5769850 None:intergenic 45.0%
!!! AAACTGGGGTTTTGGATCGA+AGG - chr4_1:5769937-5769956 None:intergenic 45.0%
! TTTTTGCAGGGTAAGGGAAC+AGG + chr4_1:5769988-5770007 Msa0531650:intron 45.0%
ACACCTAACACAGAGTGTGT+GGG - chr4_1:5770040-5770059 None:intergenic 45.0%
ACTGGAGTGAGAAGGCTATT+AGG + chr4_1:5770309-5770328 Msa0531650:CDS 45.0%
GCTATTAGGAGAAAGACCAC+TGG + chr4_1:5770323-5770342 Msa0531650:CDS 45.0%
AATCCACTCTTGAATCTGCG+AGG - chr4_1:5770380-5770399 None:intergenic 45.0%
GCTGCTTCTACCTAAGTCTT+TGG + chr4_1:5771348-5771367 Msa0531650:exon 45.0%
TATGTAGACGAAGCAGAAGC+AGG - chr4_1:5769831-5769850 None:intergenic 45.0%
!!! AAACTGGGGTTTTGGATCGA+AGG - chr4_1:5769937-5769956 None:intergenic 45.0%
! TTTTTGCAGGGTAAGGGAAC+AGG + chr4_1:5769988-5770007 Msa0531650:intron 45.0%
ACACCTAACACAGAGTGTGT+GGG - chr4_1:5770040-5770059 None:intergenic 45.0%
ACTGGAGTGAGAAGGCTATT+AGG + chr4_1:5770309-5770328 Msa0531650:CDS 45.0%
GCTATTAGGAGAAAGACCAC+TGG + chr4_1:5770323-5770342 Msa0531650:CDS 45.0%
AATCCACTCTTGAATCTGCG+AGG - chr4_1:5770380-5770399 None:intergenic 45.0%
GCTGCTTCTACCTAAGTCTT+TGG + chr4_1:5771348-5771367 Msa0531650:exon 45.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr4_1:5769878-5769897 None:intergenic 50.0%
GGTAAGGGAACAGGCAGTTT+CGG + chr4_1:5769997-5770016 Msa0531650:CDS 50.0%
CAGGCAGTTTCGGTAAGAGA+AGG + chr4_1:5770007-5770026 Msa0531650:CDS 50.0%
AGACCCACACACTCTGTGTT+AGG + chr4_1:5770034-5770053 Msa0531650:CDS 50.0%
CACACCTAACACAGAGTGTG+TGG - chr4_1:5770041-5770060 None:intergenic 50.0%
CACACACTCTGTGTTAGGTG+TGG + chr4_1:5770039-5770058 Msa0531650:CDS 50.0%
TCTGGAGATGGAAACTGCGA+CGG - chr4_1:5770065-5770084 None:intergenic 50.0%
AGGAGAAAGACCACTGGAAC+TGG + chr4_1:5770329-5770348 Msa0531650:CDS 50.0%
GAAAGACCACTGGAACTGGT+AGG + chr4_1:5770333-5770352 Msa0531650:CDS 50.0%
! CTGGTAGGATGAGGTACTTG+AGG + chr4_1:5770348-5770367 Msa0531650:CDS 50.0%
!! AACACGTGACTTGAGTTGGC+CGG + chr4_1:5771600-5771619 Msa0531650:three_prime_UTR 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr4_1:5769878-5769897 None:intergenic 50.0%
GGTAAGGGAACAGGCAGTTT+CGG + chr4_1:5769997-5770016 Msa0531650:CDS 50.0%
CAGGCAGTTTCGGTAAGAGA+AGG + chr4_1:5770007-5770026 Msa0531650:CDS 50.0%
AGACCCACACACTCTGTGTT+AGG + chr4_1:5770034-5770053 Msa0531650:CDS 50.0%
CACACCTAACACAGAGTGTG+TGG - chr4_1:5770041-5770060 None:intergenic 50.0%
CACACACTCTGTGTTAGGTG+TGG + chr4_1:5770039-5770058 Msa0531650:CDS 50.0%
TCTGGAGATGGAAACTGCGA+CGG - chr4_1:5770065-5770084 None:intergenic 50.0%
AGGAGAAAGACCACTGGAAC+TGG + chr4_1:5770329-5770348 Msa0531650:CDS 50.0%
GAAAGACCACTGGAACTGGT+AGG + chr4_1:5770333-5770352 Msa0531650:CDS 50.0%
! CTGGTAGGATGAGGTACTTG+AGG + chr4_1:5770348-5770367 Msa0531650:CDS 50.0%
GTAGACGAAGCAGAAGCAGG+TGG - chr4_1:5769828-5769847 None:intergenic 55.0%
! AGCAGCGACTCTTCTGGAGA+TGG - chr4_1:5770077-5770096 None:intergenic 55.0%
ATGCTGAGCAGCGACTCTTC+TGG - chr4_1:5770083-5770102 None:intergenic 55.0%
CTTATCCAGCTGCACGTGTC+AGG + chr4_1:5770106-5770125 Msa0531650:CDS 55.0%
CATTTCCTGACACGTGCAGC+TGG - chr4_1:5770114-5770133 None:intergenic 55.0%
CCTCATCCTACCAGTTCCAG+TGG - chr4_1:5770342-5770361 None:intergenic 55.0%
CCACTGGAACTGGTAGGATG+AGG + chr4_1:5770339-5770358 Msa0531650:CDS 55.0%
GTGCCTCGCAGATTCAAGAG+TGG + chr4_1:5770374-5770393 Msa0531650:CDS 55.0%
TGAAGCTGCACCCAGGAACA+AGG + chr4_1:5771320-5771339 Msa0531650:CDS 55.0%
GAAGCTGCACCCAGGAACAA+GGG + chr4_1:5771321-5771340 Msa0531650:CDS 55.0%
!! ACACGTGACTTGAGTTGGCC+GGG + chr4_1:5771601-5771620 Msa0531650:three_prime_UTR 55.0%
GTAGACGAAGCAGAAGCAGG+TGG - chr4_1:5769828-5769847 None:intergenic 55.0%
! AGCAGCGACTCTTCTGGAGA+TGG - chr4_1:5770077-5770096 None:intergenic 55.0%
ATGCTGAGCAGCGACTCTTC+TGG - chr4_1:5770083-5770102 None:intergenic 55.0%
CTTATCCAGCTGCACGTGTC+AGG + chr4_1:5770106-5770125 Msa0531650:CDS 55.0%
CATTTCCTGACACGTGCAGC+TGG - chr4_1:5770114-5770133 None:intergenic 55.0%
CCTCATCCTACCAGTTCCAG+TGG - chr4_1:5770342-5770361 None:intergenic 55.0%
CCACTGGAACTGGTAGGATG+AGG + chr4_1:5770339-5770358 Msa0531650:CDS 55.0%
GTGCCTCGCAGATTCAAGAG+TGG + chr4_1:5770374-5770393 Msa0531650:CDS 55.0%
TGAAGCTGCACCCAGGAACA+AGG + chr4_1:5771320-5771339 Msa0531650:CDS 55.0%
GAAGCTGCACCCAGGAACAA+GGG + chr4_1:5771321-5771340 Msa0531650:CDS 55.0%
CTGGGTGCAGCTTCAGTACC+TGG - chr4_1:5771315-5771334 None:intergenic 60.0%
!! CAGGTACTGAAGCTGCACCC+AGG + chr4_1:5771313-5771332 Msa0531650:intron 60.0%
GCAGCTGCTCCCTTGTTCCT+GGG - chr4_1:5771333-5771352 None:intergenic 60.0%
AGCAGCTGCTCCCTTGTTCC+TGG - chr4_1:5771334-5771353 None:intergenic 60.0%
CTGGGTGCAGCTTCAGTACC+TGG - chr4_1:5771315-5771334 None:intergenic 60.0%
!! CAGGTACTGAAGCTGCACCC+AGG + chr4_1:5771313-5771332 Msa0531650:intron 60.0%
GCAGCTGCTCCCTTGTTCCT+GGG - chr4_1:5771333-5771352 None:intergenic 60.0%
AGCAGCTGCTCCCTTGTTCC+TGG - chr4_1:5771334-5771353 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 5769692 5771622 5769692 ID=Msa0531650;Name=Msa0531650
chr4_1 mRNA 5769692 5771622 5769692 ID=Msa0531650-mRNA-1;Parent=Msa0531650;Name=Msa0531650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=164|1|1|1|1|1|4|260|95
chr4_1 exon 5769692 5769858 5769692 ID=Msa0531650-mRNA-1:exon:1855;Parent=Msa0531650-mRNA-1
chr4_1 exon 5769997 5770132 5769997 ID=Msa0531650-mRNA-1:exon:1856;Parent=Msa0531650-mRNA-1
chr4_1 exon 5770306 5770407 5770306 ID=Msa0531650-mRNA-1:exon:1857;Parent=Msa0531650-mRNA-1
chr4_1 exon 5771316 5771622 5771316 ID=Msa0531650-mRNA-1:exon:1858;Parent=Msa0531650-mRNA-1
chr4_1 five_prime_UTR 5769692 5769855 5769692 ID=Msa0531650-mRNA-1:five_prime_utr;Parent=Msa0531650-mRNA-1
chr4_1 CDS 5769856 5769858 5769856 ID=Msa0531650-mRNA-1:cds;Parent=Msa0531650-mRNA-1
chr4_1 CDS 5769997 5770132 5769997 ID=Msa0531650-mRNA-1:cds;Parent=Msa0531650-mRNA-1
chr4_1 CDS 5770306 5770407 5770306 ID=Msa0531650-mRNA-1:cds;Parent=Msa0531650-mRNA-1
chr4_1 CDS 5771316 5771362 5771316 ID=Msa0531650-mRNA-1:cds;Parent=Msa0531650-mRNA-1
chr4_1 three_prime_UTR 5771363 5771622 5771363 ID=Msa0531650-mRNA-1:three_prime_utr;Parent=Msa0531650-mRNA-1
Gene Sequence

>Msa0531650

ATGGGTAAGGGAACAGGCAGTTTCGGTAAGAGAAGGAACAAGACCCACACACTCTGTGTTAGGTGTGGCCGTCGCAGTTTCCATCTCCAGAAGAGTCGCTGCTCAGCATGTGCTTATCCAGCTGCACGTGTCAGGAAATATAACTGGAGTGAGAAGGCTATTAGGAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGAGGAACGTGCCTCGCAGATTCAAGAGTGGATTCAGAGAAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCAGCTGCTTCTACCTAA

Protein sequence

>Msa0531650

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAST*