AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738100 MtrunA17_Chr5g0436331 100.000 112 0 0 1 112 26 137 1.58e-79 229
Msa0738100 MtrunA17_Chr7g0268051 94.643 112 6 0 1 112 1 112 3.00e-77 223
Msa0738100 MtrunA17_Chr7g0268081 83.333 90 15 0 18 107 10 99 7.37e-52 158
Msa0738100 MtrunA17_Chr7g0268061 83.333 90 15 0 18 107 10 99 7.37e-52 158
Msa0738100 MtrunA17_Chr7g0268071 93.671 79 5 0 21 99 12 90 1.44e-51 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738100 AT1G74270.1 88.393 112 13 0 1 112 1 112 1.01e-72 212
Msa0738100 AT1G07070.1 87.500 112 14 0 1 112 1 112 1.03e-72 212
Msa0738100 AT3G55750.1 89.189 111 12 0 2 112 1 111 6.95e-72 209
Msa0738100 AT1G41880.1 88.288 111 13 0 2 112 1 111 9.99e-72 209
Msa0738100 AT1G41880.2 88.288 111 13 0 2 112 1 111 9.99e-72 209

Find 59 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAGAATTACCATTGATTT+TGG 0.162742 5_1:-55799748 None:intergenic
CATCTTCACACCAATCAAAA+TGG 0.286862 5_1:+55798673 Msa0738100:exon
GAGGAGCTCCATTTGAGATT+TGG 0.298287 5_1:-55801810 None:intergenic
ACACCAATCAAAATGGTTAA+AGG 0.309838 5_1:+55798680 Msa0738100:exon
GAATTCAACATTCTAGAAAA+AGG 0.310217 5_1:-55801724 None:intergenic
TACTCGAGTTGAGTAATTAT+AGG 0.311995 5_1:-55801891 None:intergenic
TACGTCAGGGGTACAGTTCT+TGG 0.315019 5_1:+55798869 Msa0738100:CDS
GAAGCCACTATCGCTGCATT+TGG 0.347853 5_1:+55799659 Msa0738100:CDS
ATTTGTTTCTGCAGGGAGCC+AGG 0.365825 5_1:+55799840 Msa0738100:intron
AAGCCACTATCGCTGCATTT+GGG 0.372191 5_1:+55799660 Msa0738100:CDS
TTGTAATCAGGCTTTACGTC+AGG 0.401581 5_1:+55798855 Msa0738100:intron
ATGTATCCAAGCAATATATA+AGG 0.407008 5_1:+55799875 Msa0738100:CDS
AAATTACCTTATATATTGCT+TGG 0.412163 5_1:-55799881 None:intergenic
ATCTGAACAAGAGAGGTGTT+TGG 0.416693 5_1:-55799550 None:intergenic
GACGACAAGGAGAACGTATC+AGG 0.417479 5_1:+55798702 Msa0738100:CDS
GAGGAGGTTGCATGGTATGC+TGG 0.417733 5_1:+55799592 Msa0738100:CDS
CTATCGCTGCATTTGGGGTA+AGG 0.428656 5_1:+55799666 Msa0738100:CDS
AATGCAAAGACAACCAAAAC+AGG 0.438347 5_1:-55801667 None:intergenic
CACAAAAGAACAAAATTAAG+AGG 0.439643 5_1:-55801829 None:intergenic
CCTATCCAACTGCTGGTTGT+AGG 0.442190 5_1:-55801624 None:intergenic
TGTTTAGTCCAAATCTCAAA+TGG 0.449039 5_1:+55801802 Msa0738100:three_prime_UTR
TCTGAACAAGAGAGGTGTTT+GGG 0.453404 5_1:-55799549 None:intergenic
TACCCCAAATGCAGCGATAG+TGG 0.457668 5_1:-55799663 None:intergenic
GTTTGGGTATTGATTTACCT+TGG 0.466066 5_1:-55799533 None:intergenic
ATGGTATGCTGGGAAGAAAT+TGG 0.469927 5_1:+55799603 Msa0738100:CDS
GCTTCCATCCTTCTTCACCT+TGG 0.472167 5_1:-55799641 None:intergenic
ACCTCTCTTGTTCAGATCGA+GGG 0.499812 5_1:+55799556 Msa0738100:CDS
GCATTTGGGGTAAGGTTACC+AGG 0.512393 5_1:+55799674 Msa0738100:CDS
ATACCATGCAACCTCCTCCT+TGG 0.519241 5_1:-55799587 None:intergenic
GCCACTGTTACCATGAGGCC+TGG 0.523824 5_1:-55799692 None:intergenic
TTTGTTTCTGCAGGGAGCCA+GGG 0.525769 5_1:+55799841 Msa0738100:intron
AGGAGGTTGCATGGTATGCT+GGG 0.527652 5_1:+55799593 Msa0738100:CDS
CTGTCTCTGTAGTGTTCGTT+CGG 0.535448 5_1:-55798638 None:intergenic
TTACAAGGCCAAGGTGAAGA+AGG 0.537680 5_1:+55799633 Msa0738100:CDS
TAACCTACCACCAAAATCAA+TGG 0.539094 5_1:+55799738 Msa0738100:CDS
GGCATACATTTACAAGGCCA+AGG 0.547418 5_1:+55799624 Msa0738100:CDS
CCTACAACCAGCAGTTGGAT+AGG 0.559519 5_1:+55801624 Msa0738100:three_prime_UTR
TGTAATCAGGCTTTACGTCA+GGG 0.561952 5_1:+55798856 Msa0738100:intron
GAAATTGGCATACATTTACA+AGG 0.562532 5_1:+55799618 Msa0738100:CDS
TCAATGACCTATCCAACTGC+TGG 0.569623 5_1:-55801631 None:intergenic
GTAATGTTGTTATAGGTCCA+AGG 0.573819 5_1:+55799516 Msa0738100:intron
ATACATAAATACTCTAACCC+TGG 0.583670 5_1:-55799858 None:intergenic
GGTAAGGTTACCAGGCCTCA+TGG 0.585246 5_1:+55799682 Msa0738100:CDS
TCTCTGTAGTGTTCGTTCGG+CGG 0.590287 5_1:-55798635 None:intergenic
AAGGCCAAGGTGAAGAAGGA+TGG 0.591334 5_1:+55799637 Msa0738100:CDS
CACCTCTCTTGTTCAGATCG+AGG 0.592183 5_1:+55799555 Msa0738100:CDS
ACACCAAGGAGGAGGTTGCA+TGG 0.606757 5_1:+55799584 Msa0738100:CDS
GTAATCAGGCTTTACGTCAG+GGG 0.611028 5_1:+55798857 Msa0738100:intron
GGTTAGACTTGAACTTTGCG+CGG 0.621246 5_1:-55799720 None:intergenic
AGCCACTATCGCTGCATTTG+GGG 0.627011 5_1:+55799661 Msa0738100:CDS
CCTCTCTTGTTCAGATCGAG+GGG 0.637714 5_1:+55799557 Msa0738100:CDS
GTACAGTTCTTGGATACAAG+AGG 0.641528 5_1:+55798879 Msa0738100:CDS
CCCCTCGATCTGAACAAGAG+AGG 0.655801 5_1:-55799557 None:intergenic
TGGTACCTACAACCAGCAGT+TGG 0.658224 5_1:+55801619 Msa0738100:three_prime_UTR
ACCAGGCCTCATGGTAACAG+TGG 0.661908 5_1:+55799691 Msa0738100:CDS
AACGAACACTACAGAGACAG+AGG 0.665928 5_1:+55798641 Msa0738100:five_prime_UTR
AAAATGGTTAAAGGACGACA+AGG 0.679088 5_1:+55798689 Msa0738100:exon
CTCTCTTGTTCAGATCGAGG+GGG 0.711001 5_1:+55799558 Msa0738100:CDS
ACAATGCCACTGTTACCATG+AGG 0.746625 5_1:-55799697 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAATATAATTATTT+GGG - chr5_1:55800034-55800053 None:intergenic 0.0%
!! AAATTAATAATATAATTATT+TGG - chr5_1:55800035-55800054 None:intergenic 0.0%
!!! TAATTAAATCTAATTTGTTT+GGG + chr5_1:55798995-55799014 Msa0738100:intron 10.0%
!!! TAATTTTACCATTTTATTAA+TGG + chr5_1:55799898-55799917 Msa0738100:intron 10.0%
!! TTAAATTGAAATAAAAAACA+TGG - chr5_1:55800555-55800574 None:intergenic 10.0%
!!! ACATTATAAATTAATTTTTC+AGG - chr5_1:55801103-55801122 None:intergenic 10.0%
!!! CTAATTAAATCTAATTTGTT+TGG + chr5_1:55798994-55799013 Msa0738100:intron 15.0%
!!! AATTCTTTAAGACATTTAAA+TGG + chr5_1:55799762-55799781 Msa0738100:intron 15.0%
!!! TTTTAACAAAAATTGTTTCT+AGG + chr5_1:55800725-55800744 Msa0738100:intron 15.0%
!!! ATTTTTATAGAACAGAAATA+AGG - chr5_1:55800899-55800918 None:intergenic 15.0%
!! TAAATGATTACTGTAAGATT+TGG + chr5_1:55799335-55799354 Msa0738100:intron 20.0%
!! AAATGATTACTGTAAGATTT+GGG + chr5_1:55799336-55799355 Msa0738100:intron 20.0%
!!! TTTGGGTATTATTTTTTGTA+TGG + chr5_1:55799353-55799372 Msa0738100:intron 20.0%
!! CGGAAGAAAAATTATATATT+TGG - chr5_1:55799412-55799431 None:intergenic 20.0%
!!! TAAAGAATTACCATTGATTT+TGG - chr5_1:55799751-55799770 None:intergenic 20.0%
!!! CTTTTTCACAAACTATTTTA+TGG + chr5_1:55799796-55799815 Msa0738100:intron 20.0%
!! AAATTACCTTATATATTGCT+TGG - chr5_1:55799884-55799903 None:intergenic 20.0%
!! GTTAACAACCATTAATAAAA+TGG - chr5_1:55799909-55799928 None:intergenic 20.0%
!! AACACAATTAAGTTTAATGA+GGG - chr5_1:55800222-55800241 None:intergenic 20.0%
!! TCATTAAACTTAATTGTGTT+GGG + chr5_1:55800222-55800241 Msa0738100:intron 20.0%
!! ATCTTAGAAACTATAAAACT+TGG - chr5_1:55800327-55800346 None:intergenic 20.0%
!! TTGATTTTGTGTTTGTAATC+AGG + chr5_1:55798843-55798862 Msa0738100:intron 25.0%
!!! ATGTTTAATGTTGTTTTAGC+TGG + chr5_1:55799082-55799101 Msa0738100:intron 25.0%
! ACAAACACAAATTAAAAGCT+GGG - chr5_1:55799167-55799186 None:intergenic 25.0%
! TTAAAAACCAAGACTCAATT+TGG + chr5_1:55799198-55799217 Msa0738100:intron 25.0%
!! TATTTTATCGAGGATACATT+GGG - chr5_1:55799244-55799263 None:intergenic 25.0%
!! ATATTTTATCGAGGATACAT+TGG - chr5_1:55799245-55799264 None:intergenic 25.0%
!! TTGGGTATTATATTTTATCG+AGG - chr5_1:55799254-55799273 None:intergenic 25.0%
! ATCAAAATCAAGAACTACTA+GGG - chr5_1:55799455-55799474 None:intergenic 25.0%
! GATTATTTGTGCTAAGAAAT+TGG + chr5_1:55799494-55799513 Msa0738100:intron 25.0%
!!! GAAATTGGTAATGTTGTTAT+AGG + chr5_1:55799509-55799528 Msa0738100:intron 25.0%
!!! TTTATGGTTTCTGAAAGTTT+TGG + chr5_1:55799812-55799831 Msa0738100:intron 25.0%
! ATGTATCCAAGCAATATATA+AGG + chr5_1:55799875-55799894 Msa0738100:CDS 25.0%
! CAACAATTGAATCATAACAA+CGG - chr5_1:55800007-55800026 None:intergenic 25.0%
!!! TTAGTCTGTTTTTTAATCCA+TGG + chr5_1:55800070-55800089 Msa0738100:intron 25.0%
!!! TAGTCTGTTTTTTAATCCAT+GGG + chr5_1:55800071-55800090 Msa0738100:intron 25.0%
! CAACACAATTAAGTTTAATG+AGG - chr5_1:55800223-55800242 None:intergenic 25.0%
! CTCATTAAACTTAATTGTGT+TGG + chr5_1:55800221-55800240 Msa0738100:intron 25.0%
!!! TTTCTAAGATTTTATGTGTG+CGG + chr5_1:55800337-55800356 Msa0738100:intron 25.0%
!!! AATTTGTAAGCCAGTTTTAT+TGG - chr5_1:55800420-55800439 None:intergenic 25.0%
!! CTTACAAATTTATCTAGTTC+TGG + chr5_1:55800430-55800449 Msa0738100:intron 25.0%
! CTACTTCAATTAAATGAGAA+AGG - chr5_1:55800518-55800537 None:intergenic 25.0%
!! ATTAAATTGCACTTAGTTCT+TGG + chr5_1:55800595-55800614 Msa0738100:intron 25.0%
!! AATTGGCTTACATTCTTATT+TGG + chr5_1:55800833-55800852 Msa0738100:intron 25.0%
! AACAGAGAATATAAGGTTAA+AGG - chr5_1:55800870-55800889 None:intergenic 25.0%
! GTTTAACAAAAATTGTTTCC+AGG + chr5_1:55800984-55801003 Msa0738100:intron 25.0%
!!! TATATACTGATTCCTTACAT+TGG + chr5_1:55801271-55801290 Msa0738100:intron 25.0%
!!! ATATACTGATTCCTTACATT+GGG + chr5_1:55801272-55801291 Msa0738100:intron 25.0%
! TTAGATCATTTCTTGTTAGT+TGG + chr5_1:55801305-55801324 Msa0738100:intron 25.0%
! TGTACCAATTTATGATCATT+AGG + chr5_1:55801428-55801447 Msa0738100:intron 25.0%
! GTACCAATTTATGATCATTA+GGG + chr5_1:55801429-55801448 Msa0738100:intron 25.0%
! AGAATAAGAGAATGATTCTA+TGG - chr5_1:55801538-55801557 None:intergenic 25.0%
!! CATTCCTAATCTTTGAATTT+TGG + chr5_1:55801575-55801594 Msa0738100:intron 25.0%
!! AGTTTTTATTCATCCTGTTT+TGG + chr5_1:55801654-55801673 Msa0738100:three_prime_UTR 25.0%
!! GAATTCAACATTCTAGAAAA+AGG - chr5_1:55801727-55801746 None:intergenic 25.0%
! CACAAAAGAACAAAATTAAG+AGG - chr5_1:55801832-55801851 None:intergenic 25.0%
ACACCAATCAAAATGGTTAA+AGG + chr5_1:55798680-55798699 Msa0738100:exon 30.0%
CAAATTCGTGTTAAACGAAA+TGG - chr5_1:55798749-55798768 None:intergenic 30.0%
TGCTGTATTTGATGTATTCT+TGG + chr5_1:55798937-55798956 Msa0738100:intron 30.0%
GCTGTATTTGATGTATTCTT+GGG + chr5_1:55798938-55798957 Msa0738100:intron 30.0%
CACAAACACAAATTAAAAGC+TGG - chr5_1:55799168-55799187 None:intergenic 30.0%
CATCAAAATCAAGAACTACT+AGG - chr5_1:55799456-55799475 None:intergenic 30.0%
!! TCTTGATTTTGATGTTGATC+TGG + chr5_1:55799462-55799481 Msa0738100:intron 30.0%
!! CTTGATTTTGATGTTGATCT+GGG + chr5_1:55799463-55799482 Msa0738100:intron 30.0%
GAAATTGGCATACATTTACA+AGG + chr5_1:55799618-55799637 Msa0738100:CDS 30.0%
!!! AGAATTACCATTGATTTTGG+TGG - chr5_1:55799748-55799767 None:intergenic 30.0%
ATACATAAATACTCTAACCC+TGG - chr5_1:55799861-55799880 None:intergenic 30.0%
! AATATGCTTTTGTGAACACT+TGG + chr5_1:55799965-55799984 Msa0738100:intron 30.0%
!! GGCTTTTTCTTTGTTGAATA+CGG + chr5_1:55800192-55800211 Msa0738100:intron 30.0%
! AAATTGCACTTAGTTCTTCT+TGG + chr5_1:55800598-55800617 Msa0738100:intron 30.0%
AGAATGTAAGCCAATTACAT+TGG - chr5_1:55800829-55800848 None:intergenic 30.0%
GAGAGAAAACAGAGAATATA+AGG - chr5_1:55800877-55800896 None:intergenic 30.0%
TATATGCACAGATAAAATCC+TGG - chr5_1:55801005-55801024 None:intergenic 30.0%
TTTGCACATAGTAAGATAGA+TGG + chr5_1:55801165-55801184 Msa0738100:intron 30.0%
!! TAATCTTGTTGTTTGCTTGT+TGG + chr5_1:55801235-55801254 Msa0738100:intron 30.0%
ATTCCTTACATTGGGATTAT+AGG + chr5_1:55801280-55801299 Msa0738100:intron 30.0%
AAACCTATAATCCCAATGTA+AGG - chr5_1:55801286-55801305 None:intergenic 30.0%
AGCATCTTAAGACTAATTGA+CGG + chr5_1:55801365-55801384 Msa0738100:intron 30.0%
CATCAAAGAAACAATTCACT+TGG - chr5_1:55801410-55801429 None:intergenic 30.0%
!! CAAGCAATTTCTAGAATAAG+AGG - chr5_1:55801489-55801508 None:intergenic 30.0%
! CTTGCTTAATCTTTGCATTT+TGG + chr5_1:55801505-55801524 Msa0738100:intron 30.0%
CGAACCAAAATTCAAAGATT+AGG - chr5_1:55801582-55801601 None:intergenic 30.0%
!! TTTTGGTTGTCTTTGCATTT+TGG + chr5_1:55801671-55801690 Msa0738100:three_prime_UTR 30.0%
TGTTTAGTCCAAATCTCAAA+TGG + chr5_1:55801802-55801821 Msa0738100:three_prime_UTR 30.0%
!! TACTCGAGTTGAGTAATTAT+AGG - chr5_1:55801894-55801913 None:intergenic 30.0%
CATCTTCACACCAATCAAAA+TGG + chr5_1:55798673-55798692 Msa0738100:exon 35.0%
!! CGTCCTTTAACCATTTTGAT+TGG - chr5_1:55798686-55798705 None:intergenic 35.0%
AAAATGGTTAAAGGACGACA+AGG + chr5_1:55798689-55798708 Msa0738100:exon 35.0%
GTTAAACGAAATGGATCGAA+GGG - chr5_1:55798740-55798759 None:intergenic 35.0%
TGTTAAACGAAATGGATCGA+AGG - chr5_1:55798741-55798760 None:intergenic 35.0%
TTGGTCCTTCACAATATTTG+CGG + chr5_1:55799217-55799236 Msa0738100:intron 35.0%
!! GATAATGCTGAGACTAGTTT+GGG - chr5_1:55799272-55799291 None:intergenic 35.0%
! TGATAATGCTGAGACTAGTT+TGG - chr5_1:55799273-55799292 None:intergenic 35.0%
TGAAGACACATTATGTACGA+CGG - chr5_1:55799432-55799451 None:intergenic 35.0%
GTAATGTTGTTATAGGTCCA+AGG + chr5_1:55799516-55799535 Msa0738100:intron 35.0%
!! GTTTGGGTATTGATTTACCT+TGG - chr5_1:55799536-55799555 None:intergenic 35.0%
TAACCTACCACCAAAATCAA+TGG + chr5_1:55799738-55799757 Msa0738100:CDS 35.0%
!!! TTACCATTGATTTTGGTGGT+AGG - chr5_1:55799744-55799763 None:intergenic 35.0%
! ACACTTGGTTTACGATTTTG+AGG + chr5_1:55799980-55799999 Msa0738100:intron 35.0%
! CACTTGGTTTACGATTTTGA+GGG + chr5_1:55799981-55800000 Msa0738100:intron 35.0%
!!! TCTGCATTGTGCTATTTTCA+TGG + chr5_1:55800108-55800127 Msa0738100:intron 35.0%
CAACTGCTTGTTTGTATTGT+TGG + chr5_1:55800171-55800190 Msa0738100:intron 35.0%
TGAACTTTCTCCTCTATGTA+TGG + chr5_1:55800385-55800404 Msa0738100:intron 35.0%
GAGATGTGTTCCAATAAAAC+TGG + chr5_1:55800407-55800426 Msa0738100:intron 35.0%
AATCGCACTTAAGTTCTTCT+TGG + chr5_1:55800693-55800712 Msa0738100:intron 35.0%
AAGATGTGCTCCAATGTAAT+TGG + chr5_1:55800816-55800835 Msa0738100:intron 35.0%
CTGATTGTTTGATCTCTTTC+TGG + chr5_1:55800924-55800943 Msa0738100:intron 35.0%
! ATACTGCACTTAGTTCTTCT+TGG + chr5_1:55800954-55800973 Msa0738100:intron 35.0%
! TGAGGCTTCTCTTTTATTCA+TGG + chr5_1:55801047-55801066 Msa0738100:intron 35.0%
AGTAAGATAGATGGTGTGAT+TGG + chr5_1:55801174-55801193 Msa0738100:intron 35.0%
TGACACCTCATTTGGTAAAT+TGG + chr5_1:55801206-55801225 Msa0738100:intron 35.0%
GCTAACCAATTTACCAAATG+AGG - chr5_1:55801214-55801233 None:intergenic 35.0%
! TAGTTGGTCGACATTTTGTT+TGG + chr5_1:55801321-55801340 Msa0738100:intron 35.0%
TGGTAGTATATGTCCTTTCA+TGG + chr5_1:55801341-55801360 Msa0738100:intron 35.0%
GGTAGTATATGTCCTTTCAT+GGG + chr5_1:55801342-55801361 Msa0738100:intron 35.0%
GTGCCCTAATGATCATAAAT+TGG - chr5_1:55801435-55801454 None:intergenic 35.0%
AATGCAAAGACAACCAAAAC+AGG - chr5_1:55801670-55801689 None:intergenic 35.0%
! CTCAACTCGAGTAATTTTCA+AGG + chr5_1:55801901-55801920 Msa0738100:three_prime_UTR 35.0%
TTGTAATCAGGCTTTACGTC+AGG + chr5_1:55798855-55798874 Msa0738100:intron 40.0%
TGTAATCAGGCTTTACGTCA+GGG + chr5_1:55798856-55798875 Msa0738100:intron 40.0%
GTACAGTTCTTGGATACAAG+AGG + chr5_1:55798879-55798898 Msa0738100:CDS 40.0%
TGAAGGACCAAATTGAGTCT+TGG - chr5_1:55799208-55799227 None:intergenic 40.0%
TGGTCCTTCACAATATTTGC+GGG + chr5_1:55799218-55799237 Msa0738100:intron 40.0%
TCTCAGCATTATCACAGTAC+AGG + chr5_1:55799279-55799298 Msa0738100:intron 40.0%
CCTAGACTCATTATCACAAG+CGG - chr5_1:55799313-55799332 None:intergenic 40.0%
!! TCTGAACAAGAGAGGTGTTT+GGG - chr5_1:55799552-55799571 None:intergenic 40.0%
!! ATCTGAACAAGAGAGGTGTT+TGG - chr5_1:55799553-55799572 None:intergenic 40.0%
ATGGTATGCTGGGAAGAAAT+TGG + chr5_1:55799603-55799622 Msa0738100:CDS 40.0%
!! TGGTGTTGATTTGTTTCTGC+AGG + chr5_1:55799832-55799851 Msa0738100:intron 40.0%
!! GGTGTTGATTTGTTTCTGCA+GGG + chr5_1:55799833-55799852 Msa0738100:intron 40.0%
! TTCGAGTAAGGAAGTGGATT+GGG - chr5_1:55800267-55800286 None:intergenic 40.0%
! TTTCGAGTAAGGAAGTGGAT+TGG - chr5_1:55800268-55800287 None:intergenic 40.0%
!! TGTTTTCCAGCTTTCGAGTA+AGG - chr5_1:55800279-55800298 None:intergenic 40.0%
AGGAGAAAGTTCAAGCAGAA+AGG - chr5_1:55800378-55800397 None:intergenic 40.0%
GAACACATCTCCATACATAG+AGG - chr5_1:55800398-55800417 None:intergenic 40.0%
TGAGACGTCTCTTGTATCTA+AGG + chr5_1:55800788-55800807 Msa0738100:intron 40.0%
TCTTGCTTTGACACCTCATT+TGG + chr5_1:55801198-55801217 Msa0738100:intron 40.0%
TCTTAAGATGCTCCCATGAA+AGG - chr5_1:55801357-55801376 None:intergenic 40.0%
AGATTAGGAATGCAGCTTCA+AGG - chr5_1:55801567-55801586 None:intergenic 40.0%
! TCGTCTTTGCAGATTTTCGT+TGG + chr5_1:55801599-55801618 Msa0738100:intron 40.0%
CTGTCTCTGTAGTGTTCGTT+CGG - chr5_1:55798641-55798660 None:intergenic 45.0%
AACGAACACTACAGAGACAG+AGG + chr5_1:55798641-55798660 Msa0738100:five_prime_UTR 45.0%
GTAATCAGGCTTTACGTCAG+GGG + chr5_1:55798857-55798876 Msa0738100:intron 45.0%
! CCGCTTGTGATAATGAGTCT+AGG + chr5_1:55799310-55799329 Msa0738100:intron 45.0%
TTGATGTTGATCTGGGTTGC+TGG + chr5_1:55799470-55799489 Msa0738100:intron 45.0%
ACCTCTCTTGTTCAGATCGA+GGG + chr5_1:55799556-55799575 Msa0738100:CDS 45.0%
GGCATACATTTACAAGGCCA+AGG + chr5_1:55799624-55799643 Msa0738100:CDS 45.0%
TTACAAGGCCAAGGTGAAGA+AGG + chr5_1:55799633-55799652 Msa0738100:CDS 45.0%
AAGCCACTATCGCTGCATTT+GGG + chr5_1:55799660-55799679 Msa0738100:CDS 45.0%
ACAATGCCACTGTTACCATG+AGG - chr5_1:55799700-55799719 None:intergenic 45.0%
GGTTAGACTTGAACTTTGCG+CGG - chr5_1:55799723-55799742 None:intergenic 45.0%
GAGACAAACTAAGACACCCA+TGG - chr5_1:55800090-55800109 None:intergenic 45.0%
! CTGGTAGACTATAGTTCTGC+AGG + chr5_1:55800449-55800468 Msa0738100:intron 45.0%
AAGAGACGTCTCAAGCAGAA+AGG - chr5_1:55800781-55800800 None:intergenic 45.0%
GTGTAAAACCTCTCTGCTTG+AGG + chr5_1:55801029-55801048 Msa0738100:intron 45.0%
GAGATGTTCTCCAATGTGAC+TGG + chr5_1:55801069-55801088 Msa0738100:intron 45.0%
GGAATGTAAGCCAGTCACAT+TGG - chr5_1:55801082-55801101 None:intergenic 45.0%
ACGGTATTGCACACGTTAAC+TGG + chr5_1:55801384-55801403 Msa0738100:intron 45.0%
TCAATGACCTATCCAACTGC+TGG - chr5_1:55801634-55801653 None:intergenic 45.0%
! GAGGAGCTCCATTTGAGATT+TGG - chr5_1:55801813-55801832 None:intergenic 45.0%
TCTCTGTAGTGTTCGTTCGG+CGG - chr5_1:55798638-55798657 None:intergenic 50.0%
GACGACAAGGAGAACGTATC+AGG + chr5_1:55798702-55798721 Msa0738100:CDS 50.0%
! TACGTCAGGGGTACAGTTCT+TGG + chr5_1:55798869-55798888 Msa0738100:CDS 50.0%
TGGGCCCGCAAATATTGTGA+AGG - chr5_1:55799225-55799244 None:intergenic 50.0%
CACCTCTCTTGTTCAGATCG+AGG + chr5_1:55799555-55799574 Msa0738100:CDS 50.0%
CCTCTCTTGTTCAGATCGAG+GGG + chr5_1:55799557-55799576 Msa0738100:CDS 50.0%
CTCTCTTGTTCAGATCGAGG+GGG + chr5_1:55799558-55799577 Msa0738100:CDS 50.0%
ATACCATGCAACCTCCTCCT+TGG - chr5_1:55799590-55799609 None:intergenic 50.0%
AGGAGGTTGCATGGTATGCT+GGG + chr5_1:55799593-55799612 Msa0738100:CDS 50.0%
AAGGCCAAGGTGAAGAAGGA+TGG + chr5_1:55799637-55799656 Msa0738100:CDS 50.0%
GCTTCCATCCTTCTTCACCT+TGG - chr5_1:55799644-55799663 None:intergenic 50.0%
GAAGCCACTATCGCTGCATT+TGG + chr5_1:55799659-55799678 Msa0738100:CDS 50.0%
AGCCACTATCGCTGCATTTG+GGG + chr5_1:55799661-55799680 Msa0738100:CDS 50.0%
TACCCCAAATGCAGCGATAG+TGG - chr5_1:55799666-55799685 None:intergenic 50.0%
! CTATCGCTGCATTTGGGGTA+AGG + chr5_1:55799666-55799685 Msa0738100:CDS 50.0%
! GCATTTGGGGTAAGGTTACC+AGG + chr5_1:55799674-55799693 Msa0738100:CDS 50.0%
!! ATTTGTTTCTGCAGGGAGCC+AGG + chr5_1:55799840-55799859 Msa0738100:intron 50.0%
!! TTTGTTTCTGCAGGGAGCCA+GGG + chr5_1:55799841-55799860 Msa0738100:intron 50.0%
!! AGGAAGTGGATTGGGTGGAA+AGG - chr5_1:55800259-55800278 None:intergenic 50.0%
!! GAGTAAGGAAGTGGATTGGG+TGG - chr5_1:55800264-55800283 None:intergenic 50.0%
! CCAGCTTTCGAGTAAGGAAG+TGG - chr5_1:55800273-55800292 None:intergenic 50.0%
CCACTTCCTTACTCGAAAGC+TGG + chr5_1:55800270-55800289 Msa0738100:intron 50.0%
CAGAACAGTTCGTGCAGAAC+AGG - chr5_1:55800490-55800509 None:intergenic 50.0%
AAGAGAAGCCTCAAGCAGAG+AGG - chr5_1:55801040-55801059 None:intergenic 50.0%
TGGTACCTACAACCAGCAGT+TGG + chr5_1:55801619-55801638 Msa0738100:three_prime_UTR 50.0%
! CCTATCCAACTGCTGGTTGT+AGG - chr5_1:55801627-55801646 None:intergenic 50.0%
CCTACAACCAGCAGTTGGAT+AGG + chr5_1:55801624-55801643 Msa0738100:three_prime_UTR 50.0%
CCCCTCGATCTGAACAAGAG+AGG - chr5_1:55799560-55799579 None:intergenic 55.0%
GATCGAGGGGGTAAACACCA+AGG + chr5_1:55799570-55799589 Msa0738100:CDS 55.0%
ACACCAAGGAGGAGGTTGCA+TGG + chr5_1:55799584-55799603 Msa0738100:CDS 55.0%
GAGGAGGTTGCATGGTATGC+TGG + chr5_1:55799592-55799611 Msa0738100:CDS 55.0%
GGTAAGGTTACCAGGCCTCA+TGG + chr5_1:55799682-55799701 Msa0738100:CDS 55.0%
ACCAGGCCTCATGGTAACAG+TGG + chr5_1:55799691-55799710 Msa0738100:CDS 55.0%
CAGAACAGGTCGTGCAGAAC+AGG - chr5_1:55800476-55800495 None:intergenic 55.0%
CGAGGGGGTAAACACCAAGG+AGG + chr5_1:55799573-55799592 Msa0738100:CDS 60.0%
GGGGGTAAACACCAAGGAGG+AGG + chr5_1:55799576-55799595 Msa0738100:CDS 60.0%
GCCACTGTTACCATGAGGCC+TGG - chr5_1:55799695-55799714 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 55798624 55801930 55798624 ID=Msa0738100;Name=Msa0738100
chr5_1 mRNA 55798624 55801930 55798624 ID=Msa0738100-mRNA-1;Parent=Msa0738100;Name=Msa0738100-mRNA-1;_AED=0.32;_eAED=0.32;_QI=68|1|1|1|0.75|0.6|5|321|112
chr5_1 exon 55798624 55798723 55798624 ID=Msa0738100-mRNA-1:exon:15761;Parent=Msa0738100-mRNA-1
chr5_1 exon 55798865 55798900 55798865 ID=Msa0738100-mRNA-1:exon:15762;Parent=Msa0738100-mRNA-1
chr5_1 exon 55799531 55799759 55799531 ID=Msa0738100-mRNA-1:exon:15763;Parent=Msa0738100-mRNA-1
chr5_1 exon 55799854 55799896 55799854 ID=Msa0738100-mRNA-1:exon:15764;Parent=Msa0738100-mRNA-1
chr5_1 exon 55801611 55801930 55801611 ID=Msa0738100-mRNA-1:exon:15765;Parent=Msa0738100-mRNA-1
chr5_1 five_prime_UTR 55798624 55798691 55798624 ID=Msa0738100-mRNA-1:five_prime_utr;Parent=Msa0738100-mRNA-1
chr5_1 CDS 55798692 55798723 55798692 ID=Msa0738100-mRNA-1:cds;Parent=Msa0738100-mRNA-1
chr5_1 CDS 55798865 55798900 55798865 ID=Msa0738100-mRNA-1:cds;Parent=Msa0738100-mRNA-1
chr5_1 CDS 55799531 55799759 55799531 ID=Msa0738100-mRNA-1:cds;Parent=Msa0738100-mRNA-1
chr5_1 CDS 55799854 55799895 55799854 ID=Msa0738100-mRNA-1:cds;Parent=Msa0738100-mRNA-1
chr5_1 three_prime_UTR 55799896 55799896 55799896 ID=Msa0738100-mRNA-1:three_prime_utr;Parent=Msa0738100-mRNA-1
chr5_1 three_prime_UTR 55801611 55801930 55801611 ID=Msa0738100-mRNA-1:three_prime_utr;Parent=Msa0738100-mRNA-1
Gene Sequence

>Msa0738100

ATGGTTAAAGGACGACAAGGAGAACGTATCAGGCTTTACGTCAGGGGTACAGTTCTTGGATACAAGAGGTCCAAGGTAAATCAATACCCAAACACCTCTCTTGTTCAGATCGAGGGGGTAAACACCAAGGAGGAGGTTGCATGGTATGCTGGGAAGAAATTGGCATACATTTACAAGGCCAAGGTGAAGAAGGATGGAAGCCACTATCGCTGCATTTGGGGTAAGGTTACCAGGCCTCATGGTAACAGTGGCATTGTCCGCGCAAAGTTCAAGTCTAACCTACCACCAAAATCAATGGGAGCCAGGGTTAGAGTATTTATGTATCCAAGCAATATATAA

Protein sequence

>Msa0738100

MVKGRQGERIRLYVRGTVLGYKRSKVNQYPNTSLVQIEGVNTKEEVAWYAGKKLAYIYKAKVKKDGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGARVRVFMYPSNI*