AlfalfaGEDB | Msa0244710

M. sativa cultivar zhongmu-4 / Msa0244710

KEGG: K01931
GO: GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
PFAM: PF13920.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0244710	XP_013463324.1	91.085	931	57	5	1	921	1	915	0.0	1517

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0244710	sp\|Q24746\|NEUR_DROVI	45.070	71	35	2	851	918	676	745	1.06e-11	72.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0244710	A0A072VGS4	91.085	931	57	5	1	921	1	915	0.0	1517

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0244710	0.814286	1.664407e-51	-8.615850e-47
Msa0028640	Msa0244710	0.807338	5.307797e-50	-8.615850e-47
Msa0101810	Msa0244710	-0.808413	3.135786e-50	-8.615850e-47
Msa0157290	Msa0244710	0.814185	1.751928e-51	-8.615850e-47
Msa0200780	Msa0244710	0.954323	3.833280e-112	-8.615850e-47
Msa0244710	Msa0275670	0.803861	2.847971e-49	-8.615850e-47
Msa0244710	Msa0281840	0.994162	4.769498e-205	-8.615850e-47
Msa0244710	Msa0320950	0.991778	1.719910e-189	-8.615850e-47
Msa0244710	Msa0756630	-0.814448	1.532421e-51	-8.615850e-47
Msa0244710	Msa0801760	0.801645	8.166819e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0244710	MtrunA17_Chr2g0296581	91.085	931	57	5	1	921	1	915	0.0	1517
Msa0244710	MtrunA17_Chr4g0052941	41.676	895	355	32	96	921	21	817	1.13e-157	483
Msa0244710	MtrunA17_Chr1g0197481	40.741	135	69	2	795	918	714	848	1.41e-25	114
Msa0244710	MtrunA17_Chr1g0197481	24.542	709	385	23	36	671	16	647	3.90e-19	93.2
Msa0244710	MtrunA17_Chr4g0027771	36.641	131	68	2	801	918	687	815	5.02e-22	102
Msa0244710	MtrunA17_Chr2g0292551	36.508	126	70	1	804	919	610	735	1.04e-18	91.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0244710	AT2G34920.2	30.806	633	293	15	308	920	156	663	1.52e-77	266
Msa0244710	AT1G30860.1	32.834	667	311	19	300	917	146	724	6.17e-76	263
Msa0244710	AT2G34920.1	30.016	633	284	18	308	920	156	649	3.27e-68	240
Msa0244710	AT4G20160.3	40.113	177	94	2	744	920	1046	1210	8.57e-35	144
Msa0244710	AT4G20160.3	41.290	155	70	4	301	450	208	346	3.39e-19	94.0
Msa0244710	AT4G20160.2	40.113	177	94	2	744	920	1048	1212	8.89e-35	144
Msa0244710	AT4G20160.2	41.290	155	70	4	301	450	210	348	3.48e-19	94.0
Msa0244710	AT5G04460.6	41.270	126	64	1	803	918	735	860	2.91e-27	119
Msa0244710	AT5G04460.6	28.972	321	183	10	375	671	361	660	3.34e-13	74.3
Msa0244710	AT5G04460.3	41.270	126	64	1	803	918	735	860	2.91e-27	119

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Find 178 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAAAATGGCTTCTTC+TGG	0.411314	2_2:+23445502	Msa0244710:exon
AAAGATCGTGAAGAGGAGCA+AGG	0.640572	2_2:+23448331	Msa0244710:CDS
AACACTAACTCTATCACTTT+CGG	0.419272	2_2:-23446415	None:intergenic
AACAGACAAGTACAACCATA+CGG	0.601071	2_2:+23447049	Msa0244710:CDS
AACGATTTACGGTGGACCAA+TGG	0.536877	2_2:+23449674	Msa0244710:CDS
AACTGCTTTCAGCATAGTTT+TGG	0.321527	2_2:-23447780	None:intergenic
AAGAAGTCACATAACAAGAC+TGG	0.565229	2_2:+23449462	Msa0244710:CDS
AAGAGGCTTAACAATTCAAA+TGG	0.444760	2_2:+23446090	Msa0244710:CDS
AAGAGGTTCGGAACTAGGAG+AGG	0.614950	2_2:+23446263	Msa0244710:CDS
AAGCAGTTATGAAGAGATGG+TGG	0.635175	2_2:+23447795	Msa0244710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATTGGTGTGGCTAAAAA+AGG	-	chr2_2:23445050-23445069	None:intergenic	30.0%
ATTACACGAAAAGAAAGGAA+CGG	-	chr2_2:23445259-23445278	None:intergenic	30.0%
TTCATCCCTTTATCTGAAAA+GGG	+	chr2_2:23445426-23445445	Msa0244710:intron	30.0%
TAGAGAAAGTAGCAAAGTTA+AGG	+	chr2_2:23445591-23445610	Msa0244710:CDS	30.0%
CAAAGTTCTTAATGTTCCTT+TGG	-	chr2_2:23445633-23445652	None:intergenic	30.0%
GAACATTAAGAACTTTGTCA+TGG	+	chr2_2:23445636-23445655	Msa0244710:CDS	30.0%
TTGAAGAGAAACAATCACAA+TGG	+	chr2_2:23445796-23445815	Msa0244710:CDS	30.0%
TGGTATCATCAACAACAATA+AGG	+	chr2_2:23445816-23445835	Msa0244710:CDS	30.0%
TTGTTCAATTATGGGAAAAG+AGG	+	chr2_2:23446073-23446092	Msa0244710:CDS	30.0%
AAGAGGCTTAACAATTCAAA+TGG	+	chr2_2:23446090-23446109	Msa0244710:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	23445030	23449953	23445030	ID=Msa0244710;Name=Msa0244710
chr2_2	mRNA	23445030	23449953	23445030	ID=Msa0244710-mRNA-1;Parent=Msa0244710;Name=Msa0244710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=227\|1\|1\|1\|0.85\|0.75\|8\|196\|921
chr2_2	exon	23445030	23445209	23445030	ID=Msa0244710-mRNA-1:exon:8929;Parent=Msa0244710-mRNA-1
chr2_2	exon	23445464	23446740	23445464	ID=Msa0244710-mRNA-1:exon:8930;Parent=Msa0244710-mRNA-1
chr2_2	exon	23446971	23447092	23446971	ID=Msa0244710-mRNA-1:exon:8931;Parent=Msa0244710-mRNA-1
chr2_2	exon	23447387	23447962	23447387	ID=Msa0244710-mRNA-1:exon:8932;Parent=Msa0244710-mRNA-1
chr2_2	exon	23448084	23448564	23448084	ID=Msa0244710-mRNA-1:exon:8933;Parent=Msa0244710-mRNA-1
chr2_2	exon	23448656	23448800	23448656	ID=Msa0244710-mRNA-1:exon:8934;Parent=Msa0244710-mRNA-1
chr2_2	exon	23449448	23449541	23449448	ID=Msa0244710-mRNA-1:exon:8935;Parent=Msa0244710-mRNA-1
chr2_2	exon	23449640	23449953	23449640	ID=Msa0244710-mRNA-1:exon:8936;Parent=Msa0244710-mRNA-1
chr2_2	five_prime_UTR	23445030	23445209	23445030	ID=Msa0244710-mRNA-1:five_prime_utr;Parent=Msa0244710-mRNA-1
chr2_2	five_prime_UTR	23445464	23445510	23445464	ID=Msa0244710-mRNA-1:five_prime_utr;Parent=Msa0244710-mRNA-1
chr2_2	CDS	23445511	23446740	23445511	ID=Msa0244710-mRNA-1:cds;Parent=Msa0244710-mRNA-1
chr2_2	CDS	23446971	23447092	23446971	ID=Msa0244710-mRNA-1:cds;Parent=Msa0244710-mRNA-1
chr2_2	CDS	23447387	23447962	23447387	ID=Msa0244710-mRNA-1:cds;Parent=Msa0244710-mRNA-1
chr2_2	CDS	23448084	23448564	23448084	ID=Msa0244710-mRNA-1:cds;Parent=Msa0244710-mRNA-1
chr2_2	CDS	23448656	23448800	23448656	ID=Msa0244710-mRNA-1:cds;Parent=Msa0244710-mRNA-1
chr2_2	CDS	23449448	23449541	23449448	ID=Msa0244710-mRNA-1:cds;Parent=Msa0244710-mRNA-1
chr2_2	CDS	23449640	23449757	23449640	ID=Msa0244710-mRNA-1:cds;Parent=Msa0244710-mRNA-1
chr2_2	three_prime_UTR	23449758	23449953	23449758	ID=Msa0244710-mRNA-1:three_prime_utr;Parent=Msa0244710-mRNA-1

Gene Sequence

>Msa0244710

ATGGCTTCTTCTGGTGTTGAAATTGCGACTTCTTCGCCTTTTGGTTGTGTTCTAAGGGACCGTAATCATCGTGATGGATGTAGAGAAAGTAGCAAAGTTAAGGCTACACATGCTGTTTTCCAAAGGAACATTAAGAACTTTGTCATGGACCACCTTAACACGTGCATTACAATGTCTTCTGATTCTGCAACAAACGAAAACAACGAGAGTCAAATGAAGAACAACAACAATAACAATGTTTCTTCTTGGGCTTCAAAAGGTAGCAACAATCTTGCAAGGCTTCGTTTGAAGAGAAACAATCACAATGGTATCATCAACAACAATAAGGATAACGAAAATGAGCCATCCTTGGCTTCGTTGATTAGTCCGAGACATTCGCGCCTTCTTGATAGATGGGCTGCGAGACAAGCTCGTGAGATGGTGTCGAATTTGGAGAATGAAACTGAATTGTTGTCGATTGACAACACGAACAATGACAACAACATGTCTGAAATTGTAAGGACATCTAGTTCTACCTCGGATGAATGTTCTTCGGAGAAATTGAACCTTGGTGCGTCTTCCCTTGTTCAATTATGGGAAAAGAGGCTTAACAATTCAAATGGATCCAAACCAAACACTCCAATGGAGAAAACAAGTCCAACGGGTGTGACAAGTGCAACTTGCAACAATGAGAATGTGTTTGTTGCTAACAGTCCAACTGGTGGTACAACTGCAACTTGCAACAATGAGAATGCGTTTGTTGTTGAAGAAAAAAGAGGTTCGGAACTAGGAGAGGGTTTTGAAGGACCGTTATCATCAGGGAATGAAGAATCGTTTTCGTTTTCTTCATTCACTGATTGGGAATCTGATAAGACAGGTGATCAGAGTAGGTTGTGTTCAGTTGATCAAAGTAGGAAGAATTCGTCCGAAAGTGATAGAGTTAGTGTTGCTGATATCATAAAGAAACTCACTGCTACAAGTCAAACTCAGAGTTCACCTCCATCTTCTGGTGATGACAATGATCATGAAGGATGTGGTGGTAGCAGTGTGGCAAGTTCTCCTCGTAAAGATTTTGCACCAGAACTTTCAGAGCAAAGAGCCTTTCCTCAGGTTACTTGTTCAAAACGAATTAGAGGACGTCGAGCTTTCAATGATTTGCTTATGCAGTTGGAGCGTGATAGGCATGGGGAGCTAAAGAACTTGGCCGAACGTGGAACTGTCTCCAAGTTCGCACAAAAAGGTCGCATTCAGGCATTACTTCGACTTAAATTGTTACGTGGCGCGGCAGCTAATGTTCCATCACACCAGAAATCAACATCATCTGAAGTAAACAGACAAGTACAACCATACGGATCTGCCATTATGCAACTAAGGAAAAATTTTAGCATCAGGGCCAAAGAAAGAAATACAGTACAGGCAGAAGTAGTGAACACACGAAGTCCTCCCAAAGAGATAGTAAACACACAATTACAAAACTCTACCACTGCTGATCAAATCAGCAAAGACACAAGTGGCCAGATTGTGCATGGAACTGTCAGTCACGCCATAGAATTGACAAAGTCGGAGACTCAGACTAGAGAAGAAGATCATCCAAGCTCAACTGTCATGTCTCAAGAAACATGTTTTGAGGCTCAGCGTGATTACTGTGAGGAAACTTCTGAGGAAACTGCATCAATAACAGATTCAAATTTTAACGAGAAAAAGGAAATTAACCAGCAAAATGATGAAAACAGTTATGATTGTGCAGTAGAAGAGGAAGGGAGTAACCAAAACTATGCTGAAAGCAGTTATGAAGAGATGGTGGAAGAGAATTATGATGAAAATAATTATGACTGGATCAGTGAAATTTCTCGACCGAGAAGCTATTGGGAAGAGCGGAGGCAAGCATGGTATAGAGAGATGCTTGACACCGGTTCTCCAAATGAAGATATACAGGTGCTTCTTCAAAGAAGAACAGTTTCAACCTTCCTTTCTAGTGGCTTCCGCGAAACAATGGATAGGTTGATGCAGTCTCATAAAGGAACACAAACACATCTAGTTAGCAGTCAAGATGATGAGATAGACAATGAAGGGTTGATGGCGTTTTTCCAAGAACACTTGTATCCTGGAAGATCTCCTCAAGAAAATGGAACAGATAGAACGGTAGATGAAGAAGAGGAAAGGGTAAATGAGGAGGAGGAGGAGAAGCAAGATGAGAAAGATCGTGAAGAGGAGCAAGGAGGGGAGAGCTTGGTTAGTAGTAGCTTGGTTAGTAGTTTGTGTCATGAAATCGGAGACTATTCTAATCAATCCTCATCATGGAGTTATAGAGACAATGAAGTTGGTGATGATTTTGATAGAGTAGCTTCTACATCTTCACAACCTTATCAATCTCAGTCTTCCTATCATGATAATCGGCCAAACTCCTCGTCTACCAATCATCATTCAATTGAAATGGATCTCATATATGATATGAGAGGCCATATGGAGCAACTTTATCAAGAGATGAGTGAACTAAGGAAATCAATAAAGAGTTGCATGGATATGCAGATGCAGATGCAGTTACAAAAATCCAATAACCAAAGGGTGCAAACAGCTGAAAAGGAAGAAAAGAAGTCACATAACAAGACTGGTAAGAAAGGAAACTGCTGCATTTGCCATGAGATGAAAGTTGACTCAGTTCTATACAGGTGTGGACACATGTGTGCATGTCTGAAATGTGCCAACGATTTACGGTGGACCAATGGAAAATGTCCAATATGTCGCGCTAAAATAGACGATGTTGTTCGAGTTTATCTTGAAGTATAG

Protein sequence

>Msa0244710

MASSGVEIATSSPFGCVLRDRNHRDGCRESSKVKATHAVFQRNIKNFVMDHLNTCITMSSDSATNENNESQMKNNNNNNVSSWASKGSNNLARLRLKRNNHNGIINNNKDNENEPSLASLISPRHSRLLDRWAARQAREMVSNLENETELLSIDNTNNDNNMSEIVRTSSSTSDECSSEKLNLGASSLVQLWEKRLNNSNGSKPNTPMEKTSPTGVTSATCNNENVFVANSPTGGTTATCNNENAFVVEEKRGSELGEGFEGPLSSGNEESFSFSSFTDWESDKTGDQSRLCSVDQSRKNSSESDRVSVADIIKKLTATSQTQSSPPSSGDDNDHEGCGGSSVASSPRKDFAPELSEQRAFPQVTCSKRIRGRRAFNDLLMQLERDRHGELKNLAERGTVSKFAQKGRIQALLRLKLLRGAAANVPSHQKSTSSEVNRQVQPYGSAIMQLRKNFSIRAKERNTVQAEVVNTRSPPKEIVNTQLQNSTTADQISKDTSGQIVHGTVSHAIELTKSETQTREEDHPSSTVMSQETCFEAQRDYCEETSEETASITDSNFNEKKEINQQNDENSYDCAVEEEGSNQNYAESSYEEMVEENYDENNYDWISEISRPRSYWEERRQAWYREMLDTGSPNEDIQVLLQRRTVSTFLSSGFRETMDRLMQSHKGTQTHLVSSQDDEIDNEGLMAFFQEHLYPGRSPQENGTDRTVDEEEERVNEEEEEKQDEKDREEEQGGESLVSSSLVSSLCHEIGDYSNQSSSWSYRDNEVGDDFDRVASTSSQPYQSQSSYHDNRPNSSSTNHHSIEMDLIYDMRGHMEQLYQEMSELRKSIKSCMDMQMQMQLQKSNNQRVQTAEKEEKKSHNKTGKKGNCCICHEMKVDSVLYRCGHMCACLKCANDLRWTNGKCPICRAKIDDVVRVYLEV*