AlfalfaGEDB | Msa0320950

M. sativa cultivar zhongmu-4 / Msa0320950

KEGG: K01931
GO: GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
PFAM: PF13920.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320950	XP_013463324.1	91.085	931	57	5	1	921	1	915	0.0	1517

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320950	sp\|Q24746\|NEUR_DROVI	45.070	71	35	2	851	918	676	745	1.06e-11	72.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0320950	0.819201	1.315397e-52	-8.615850e-47
Msa0028640	Msa0320950	0.810266	1.255275e-50	-8.615850e-47
Msa0101810	Msa0320950	-0.807615	4.636494e-50	-8.615850e-47
Msa0110970	Msa0320950	0.807235	5.582044e-50	-8.615850e-47
Msa0118570	Msa0320950	0.801426	9.054121e-49	-8.615850e-47
Msa0157290	Msa0320950	0.819298	1.249908e-52	-8.615850e-47
Msa0191250	Msa0320950	0.805685	1.184787e-49	-8.615850e-47
Msa0200780	Msa0320950	0.959110	4.410610e-117	-8.615850e-47
Msa0244710	Msa0320950	0.991778	1.719910e-189	-8.615850e-47
Msa0260820	Msa0320950	-0.808622	2.828872e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320950	MtrunA17_Chr2g0296581	91.085	931	57	5	1	921	1	915	0.0	1517
Msa0320950	MtrunA17_Chr4g0052941	41.676	895	355	32	96	921	21	817	1.13e-157	483
Msa0320950	MtrunA17_Chr1g0197481	40.741	135	69	2	795	918	714	848	1.41e-25	114
Msa0320950	MtrunA17_Chr1g0197481	24.542	709	385	23	36	671	16	647	3.90e-19	93.2
Msa0320950	MtrunA17_Chr4g0027771	36.641	131	68	2	801	918	687	815	5.02e-22	102
Msa0320950	MtrunA17_Chr2g0292551	36.508	126	70	1	804	919	610	735	1.04e-18	91.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320950	AT2G34920.2	30.806	633	293	15	308	920	156	663	1.52e-77	266
Msa0320950	AT1G30860.1	32.834	667	311	19	300	917	146	724	6.17e-76	263
Msa0320950	AT2G34920.1	30.016	633	284	18	308	920	156	649	3.27e-68	240
Msa0320950	AT4G20160.3	40.113	177	94	2	744	920	1046	1210	8.57e-35	144
Msa0320950	AT4G20160.3	41.290	155	70	4	301	450	208	346	3.39e-19	94.0
Msa0320950	AT4G20160.2	40.113	177	94	2	744	920	1048	1212	8.89e-35	144
Msa0320950	AT4G20160.2	41.290	155	70	4	301	450	210	348	3.48e-19	94.0
Msa0320950	AT5G04460.6	41.270	126	64	1	803	918	735	860	2.91e-27	119
Msa0320950	AT5G04460.6	28.972	321	183	10	375	671	361	660	3.34e-13	74.3
Msa0320950	AT5G04460.3	41.270	126	64	1	803	918	735	860	2.91e-27	119

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Find 178 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAAAATGGCTTCTTC+TGG	0.411314	2_4:-21910763	Msa0320950:exon
AAAGATCGTGAAGAGGAGCA+AGG	0.640572	2_4:-21907934	Msa0320950:CDS
AACACTAACTCTATCACTTT+CGG	0.419272	2_4:+21909850	None:intergenic
AACAGACAAGTACAACCATA+CGG	0.601071	2_4:-21909216	Msa0320950:CDS
AACGATTTACGGTGGACCAA+TGG	0.536877	2_4:-21906591	Msa0320950:CDS
AACTGCTTTCAGCATAGTTT+TGG	0.321527	2_4:+21908485	None:intergenic
AAGAAGTCACATAACAAGAC+TGG	0.565229	2_4:-21906803	Msa0320950:CDS
AAGAGGCTTAACAATTCAAA+TGG	0.444760	2_4:-21910175	Msa0320950:CDS
AAGAGGTTCGGAACTAGGAG+AGG	0.614950	2_4:-21910002	Msa0320950:CDS
AAGCAGTTATGAAGAGATGG+TGG	0.635175	2_4:-21908470	Msa0320950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATTGGTGTGGCTAAAAA+AGG	+	chr2_4:21906354-21906373	None:intergenic	30.0%
ATTACACGAAAAGAAAGGAA+CGG	+	chr2_4:21906563-21906582	None:intergenic	30.0%
TTCATCCCTTTATCTGAAAA+GGG	-	chr2_4:21906730-21906749	Msa0320950:intron	30.0%
TAGAGAAAGTAGCAAAGTTA+AGG	-	chr2_4:21906895-21906914	Msa0320950:intron	30.0%
CAAAGTTCTTAATGTTCCTT+TGG	+	chr2_4:21906937-21906956	None:intergenic	30.0%
GAACATTAAGAACTTTGTCA+TGG	-	chr2_4:21906940-21906959	Msa0320950:intron	30.0%
TTGAAGAGAAACAATCACAA+TGG	-	chr2_4:21907100-21907119	Msa0320950:intron	30.0%
TGGTATCATCAACAACAATA+AGG	-	chr2_4:21907120-21907139	Msa0320950:intron	30.0%
TTGTTCAATTATGGGAAAAG+AGG	-	chr2_4:21907377-21907396	Msa0320950:intron	30.0%
AAGAGGCTTAACAATTCAAA+TGG	-	chr2_4:21907394-21907413	Msa0320950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	21906334	21911257	21906334	ID=Msa0320950;Name=Msa0320950
chr2_4	mRNA	21906334	21911257	21906334	ID=Msa0320950-mRNA-1;Parent=Msa0320950;Name=Msa0320950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=227\|1\|1\|1\|0.85\|0.75\|8\|196\|921
chr2_4	exon	21906334	21906647	21906334	ID=Msa0320950-mRNA-1:exon:8063;Parent=Msa0320950-mRNA-1
chr2_4	exon	21906746	21906839	21906746	ID=Msa0320950-mRNA-1:exon:8062;Parent=Msa0320950-mRNA-1
chr2_4	exon	21907487	21907631	21907487	ID=Msa0320950-mRNA-1:exon:8061;Parent=Msa0320950-mRNA-1
chr2_4	exon	21907723	21908203	21907723	ID=Msa0320950-mRNA-1:exon:8060;Parent=Msa0320950-mRNA-1
chr2_4	exon	21908325	21908900	21908325	ID=Msa0320950-mRNA-1:exon:8059;Parent=Msa0320950-mRNA-1
chr2_4	exon	21909195	21909316	21909195	ID=Msa0320950-mRNA-1:exon:8058;Parent=Msa0320950-mRNA-1
chr2_4	exon	21909547	21910823	21909547	ID=Msa0320950-mRNA-1:exon:8057;Parent=Msa0320950-mRNA-1
chr2_4	exon	21911078	21911257	21911078	ID=Msa0320950-mRNA-1:exon:8056;Parent=Msa0320950-mRNA-1
chr2_4	five_prime_UTR	21911078	21911257	21911078	ID=Msa0320950-mRNA-1:five_prime_utr;Parent=Msa0320950-mRNA-1
chr2_4	five_prime_UTR	21910777	21910823	21910777	ID=Msa0320950-mRNA-1:five_prime_utr;Parent=Msa0320950-mRNA-1
chr2_4	CDS	21909547	21910776	21909547	ID=Msa0320950-mRNA-1:cds;Parent=Msa0320950-mRNA-1
chr2_4	CDS	21909195	21909316	21909195	ID=Msa0320950-mRNA-1:cds;Parent=Msa0320950-mRNA-1
chr2_4	CDS	21908325	21908900	21908325	ID=Msa0320950-mRNA-1:cds;Parent=Msa0320950-mRNA-1
chr2_4	CDS	21907723	21908203	21907723	ID=Msa0320950-mRNA-1:cds;Parent=Msa0320950-mRNA-1
chr2_4	CDS	21907487	21907631	21907487	ID=Msa0320950-mRNA-1:cds;Parent=Msa0320950-mRNA-1
chr2_4	CDS	21906746	21906839	21906746	ID=Msa0320950-mRNA-1:cds;Parent=Msa0320950-mRNA-1
chr2_4	CDS	21906530	21906647	21906530	ID=Msa0320950-mRNA-1:cds;Parent=Msa0320950-mRNA-1
chr2_4	three_prime_UTR	21906334	21906529	21906334	ID=Msa0320950-mRNA-1:three_prime_utr;Parent=Msa0320950-mRNA-1

Gene Sequence

>Msa0320950

ATGGCTTCTTCTGGTGTTGAAATTGCGACTTCTTCGCCTTTTGGTTGTGTTCTAAGGGACCGTAATCATCGTGATGGATGTAGAGAAAGTAGCAAAGTTAAGGCTACACATGCTGTTTTCCAAAGGAACATTAAGAACTTTGTCATGGACCACCTTAACACGTGCATTACAATGTCTTCTGATTCTGCAACAAACGAAAACAACGAGAGTCAAATGAAGAACAACAACAATAACAATGTTTCTTCTTGGGCTTCAAAAGGTAGCAACAATCTTGCAAGGCTTCGTTTGAAGAGAAACAATCACAATGGTATCATCAACAACAATAAGGATAACGAAAATGAGCCATCCTTGGCTTCGTTGATTAGTCCGAGACATTCGCGCCTTCTTGATAGATGGGCTGCGAGACAAGCTCGTGAGATGGTGTCGAATTTGGAGAATGAAACTGAATTGTTGTCGATTGACAACACGAACAATGACAACAACATGTCTGAAATTGTAAGGACATCTAGTTCTACCTCGGATGAATGTTCTTCGGAGAAATTGAACCTTGGTGCGTCTTCCCTTGTTCAATTATGGGAAAAGAGGCTTAACAATTCAAATGGATCCAAACCAAACACTCCAATGGAGAAAACAAGTCCAACGGGTGTGACAAGTGCAACTTGCAACAATGAGAATGTGTTTGTTGCTAACAGTCCAACTGGTGGTACAACTGCAACTTGCAACAATGAGAATGCGTTTGTTGTTGAAGAAAAAAGAGGTTCGGAACTAGGAGAGGGTTTTGAAGGACCGTTATCATCAGGGAATGAAGAATCGTTTTCGTTTTCTTCATTCACTGATTGGGAATCTGATAAGACAGGTGATCAGAGTAGGTTGTGTTCAGTTGATCAAAGTAGGAAGAATTCGTCCGAAAGTGATAGAGTTAGTGTTGCTGATATCATAAAGAAACTCACTGCTACAAGTCAAACTCAGAGTTCACCTCCATCTTCTGGTGATGACAATGATCATGAAGGATGTGGTGGTAGCAGTGTGGCAAGTTCTCCTCGTAAAGATTTTGCACCAGAACTTTCAGAGCAAAGAGCCTTTCCTCAGGTTACTTGTTCAAAACGAATTAGAGGACGTCGAGCTTTCAATGATTTGCTTATGCAGTTGGAGCGTGATAGGCATGGGGAGCTAAAGAACTTGGCCGAACGTGGAACTGTCTCCAAGTTCGCACAAAAAGGTCGCATTCAGGCATTACTTCGACTTAAATTGTTACGTGGCGCGGCAGCTAATGTTCCATCACACCAGAAATCAACATCATCTGAAGTAAACAGACAAGTACAACCATACGGATCTGCCATTATGCAACTAAGGAAAAATTTTAGCATCAGGGCCAAAGAAAGAAATACAGTACAGGCAGAAGTAGTGAACACACGAAGTCCTCCCAAAGAGATAGTAAACACACAATTACAAAACTCTACCACTGCTGATCAAATCAGCAAAGACACAAGTGGCCAGATTGTGCATGGAACTGTCAGTCACGCCATAGAATTGACAAAGTCGGAGACTCAGACTAGAGAAGAAGATCATCCAAGCTCAACTGTCATGTCTCAAGAAACATGTTTTGAGGCTCAGCGTGATTACTGTGAGGAAACTTCTGAGGAAACTGCATCAATAACAGATTCAAATTTTAACGAGAAAAAGGAAATTAACCAGCAAAATGATGAAAACAGTTATGATTGTGCAGTAGAAGAGGAAGGGAGTAACCAAAACTATGCTGAAAGCAGTTATGAAGAGATGGTGGAAGAGAATTATGATGAAAATAATTATGACTGGATCAGTGAAATTTCTCGACCGAGAAGCTATTGGGAAGAGCGGAGGCAAGCATGGTATAGAGAGATGCTTGACACCGGTTCTCCAAATGAAGATATACAGGTGCTTCTTCAAAGAAGAACAGTTTCAACCTTCCTTTCTAGTGGCTTCCGCGAAACAATGGATAGGTTGATGCAGTCTCATAAAGGAACACAAACACATCTAGTTAGCAGTCAAGATGATGAGATAGACAATGAAGGGTTGATGGCGTTTTTCCAAGAACACTTGTATCCTGGAAGATCTCCTCAAGAAAATGGAACAGATAGAACGGTAGATGAAGAAGAGGAAAGGGTAAATGAGGAGGAGGAGGAGAAGCAAGATGAGAAAGATCGTGAAGAGGAGCAAGGAGGGGAGAGCTTGGTTAGTAGTAGCTTGGTTAGTAGTTTGTGTCATGAAATCGGAGACTATTCTAATCAATCCTCATCATGGAGTTATAGAGACAATGAAGTTGGTGATGATTTTGATAGAGTAGCTTCTACATCTTCACAACCTTATCAATCTCAGTCTTCCTATCATGATAATCGGCCAAACTCCTCGTCTACCAATCATCATTCAATTGAAATGGATCTCATATATGATATGAGAGGCCATATGGAGCAACTTTATCAAGAGATGAGTGAACTAAGGAAATCAATAAAGAGTTGCATGGATATGCAGATGCAGATGCAGTTACAAAAATCCAATAACCAAAGGGTGCAAACAGCTGAAAAGGAAGAAAAGAAGTCACATAACAAGACTGGTAAGAAAGGAAACTGCTGCATTTGCCATGAGATGAAAGTTGACTCAGTTCTATACAGGTGTGGACACATGTGTGCATGTCTGAAATGTGCCAACGATTTACGGTGGACCAATGGAAAATGTCCAATATGTCGCGCTAAAATAGACGATGTTGTTCGAGTTTATCTTGAAGTATAG

Protein sequence

>Msa0320950

MASSGVEIATSSPFGCVLRDRNHRDGCRESSKVKATHAVFQRNIKNFVMDHLNTCITMSSDSATNENNESQMKNNNNNNVSSWASKGSNNLARLRLKRNNHNGIINNNKDNENEPSLASLISPRHSRLLDRWAARQAREMVSNLENETELLSIDNTNNDNNMSEIVRTSSSTSDECSSEKLNLGASSLVQLWEKRLNNSNGSKPNTPMEKTSPTGVTSATCNNENVFVANSPTGGTTATCNNENAFVVEEKRGSELGEGFEGPLSSGNEESFSFSSFTDWESDKTGDQSRLCSVDQSRKNSSESDRVSVADIIKKLTATSQTQSSPPSSGDDNDHEGCGGSSVASSPRKDFAPELSEQRAFPQVTCSKRIRGRRAFNDLLMQLERDRHGELKNLAERGTVSKFAQKGRIQALLRLKLLRGAAANVPSHQKSTSSEVNRQVQPYGSAIMQLRKNFSIRAKERNTVQAEVVNTRSPPKEIVNTQLQNSTTADQISKDTSGQIVHGTVSHAIELTKSETQTREEDHPSSTVMSQETCFEAQRDYCEETSEETASITDSNFNEKKEINQQNDENSYDCAVEEEGSNQNYAESSYEEMVEENYDENNYDWISEISRPRSYWEERRQAWYREMLDTGSPNEDIQVLLQRRTVSTFLSSGFRETMDRLMQSHKGTQTHLVSSQDDEIDNEGLMAFFQEHLYPGRSPQENGTDRTVDEEEERVNEEEEEKQDEKDREEEQGGESLVSSSLVSSLCHEIGDYSNQSSSWSYRDNEVGDDFDRVASTSSQPYQSQSSYHDNRPNSSSTNHHSIEMDLIYDMRGHMEQLYQEMSELRKSIKSCMDMQMQMQLQKSNNQRVQTAEKEEKKSHNKTGKKGNCCICHEMKVDSVLYRCGHMCACLKCANDLRWTNGKCPICRAKIDDVVRVYLEV*